LOCUS E.coli 4759 bp RNA RNA 11-JAN-1980 DEFINITION Escherichia coli. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS No information JOURNAL E.coli:who:Published STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 4759) Corresponding GenBank entry: J01695 Phylo:Eubacteria,Purple,gamma,3 BASE COUNT 762 a 639 c 912 g 591 t 1855 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGCGAC- --UAAGCGUA CACGGUGGAU 121 G|CCCUGG|C AGUCAG|AG| GC-GAUGAAG GA|CGUG(CU AA-UC-)U|- GCG-AUAAGC 181 GUCGGU|-AA GGU(G-AU-A UGA-)ACCGU UAUAAC-CGG CGAUU|UCCG AAUGGG(GAA 241 A)CCC|AGUG UGU-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----UUCG)- ACACACU-AU CA-UUAACU( 481 GA-AUCCA-- UA)GGU-UAA -U-G--AGG- C-GAAC|CG- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCC GAGGAAAAGA AAUC(-AACC --)GAGAU|U CC-CCCAGUA GC(GGCGA)G 601 CGA-ACG-GG GA-GCA-GCC CA-------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----gagcc ugaaucagug uguguguu-a gugGAAg-cg u-c(u-ggaa a)g-gcgcgc 781 |g(aua)caG GG(UGACAGC )CCCGU-Aca c-aaaaaugc aca-ugcug- ----ugagcu 841 c--------- ---------- -----GAUGA GUAGGGCGGG A(CACGUG-G UA)UCCUGUC 901 UGAAUAU-GG G-GG(GACCA U)CC-UCC-A AGGCUAA--- -AUACUCCUG ACUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGCGAAAA-G AACCCC(GGC GA-)GGGGA- 1021 -GUGAAA-AA GAACCUGAAA CCGU-GUACG UACAA-G-CA GUGGGAGCAC --GC------ 1081 --------(- ---uuag--) ---------- ----GC-GUG UGACUGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAU-AUUC- UGUAGC-AAG GUUAACC--( -GAAUA)--G 1201 G-GGAGCCGA AGG(GAAA-) CCGAGUCU(U AA-CU)GGGC GU-------- ---------- 1261 ---------- ------u-aa G-UUGCAGGG UAUA-GACCC GAAAC-CCG- GUGA-UCUAG 1321 CCAUGGG|CA GGUUGAAGGU UGGG(UAAC) AC-UAACUGG AGGACCGAAC C-GACUAAU( 1381 -GUUGAAAA) AUUAG|CGG- AUGAC-UUGU GGCUGGGGGU (-GAAAG)GC CAAUCAAACC 1441 GGGAGAUAGC UGGUUCUCCC CGAAAGCUAU (-UUAG)GUA GCGC|-CUCG UGAAU---U| 1501 -CAU|CUCCG G|GGGUAG|A GC-ACUGU-U UCGGCAA-GG |-GGGUC(AU CCC)GACUUA 1561 CCAACCCGAU -GCAAACUGC GAA-UA-|CC G-G-A-G--A AUGU---UA| UCA-CGGGAG 1621 ACACAC--GG C-GGGU(GCU AAC)GUCCGU -CGUG-AAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAGUC-AUGG -U-UAA-GUG ------GGAA ACGAUGUG-G 1741 GAAGGCCCA- GACAGCCAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG GU-----CGA GU-CGG-CC- -UGC|GCGGA AGAU-GUAA- 1861 CGGGGCU-AA ACCAU-G|C| ACCGAAGCU| GCGG|cagcg acgc---(uu au-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- gcguuguug- GG-UAGGGGA G|-----CGU 2221 U-CUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCUG-C 2341 GAAGGUG-U- G-CU(-GUGA -)GGC--AUG CUGG|AGGUA U-CAGAAGUG CGAAUGC-UG 2401 AC|AUA-AGU A--ACGAUAA AGCGGG(UGA AAAG)CCCGC U|CGCC-GGA AGACCAAGGG 2461 UUCCUG-UCC AACG-(UUAA U)CG|G-GGC AGGGUGAGU| CGA|C-CCCU AAGGCGAGGC 2521 C(GAAA)-G- GCGU-AGUCG AUGG-GAAAC AGG-(UU-AA UAUU)C-CUG U|AC|uu-g- 2581 gu-guu-acu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga a------ggg g--gga-cgg agaaggcua- uguu-g-|gc c-ggg(cg-- 2761 acgg-u-ugu --)cc-cggu -|uuaa---- ---------- ---gcgu-gu aggc------ 2821 -ugguuu-uc cagg(ca-aa -u-)cc|g-- gaaaaucaa- ---------- ggcu-gaggc 2881 gug-auga|c ga-|------ ------ggca c(-uacg--) gugcu----- ------gaag 2941 --caaca-aa ugcc-cug-| cuuccaggaa a-agccuc-u aagcauca-- ------gg-u 3001 -aacau--ca a|A|UCGUAC CCCAAACC(G ACACA)GG|U GG-UCAGGU- A-(GAGAA)U 3061 ACCAAGGCGC ||UUGAGAGA ACUCGGGUG- ---------- ----AAGGAA CUAGGCAAAA 3121 UGGUGCCGUA AC(-UUCG)G GAGAAGGCAC |GCUGAUaug -uaggug--- -----agguc 3181 c(-cucgc)g gaug------ ---gagcug- aaAUCAG-U| C(GAA)GAUA CCAGCUG-GC 3241 UG|CAACU-- ---GU(UUAU UAAAA)ACAC AGCACUGUG| CAAACAC(GA AA------)G 3301 UGGACGU-AU ACGGUGUGA- CGCCUGCCCG GU|GCCG-GA A-GGUUAAUU GAUGGGGUUA 3361 GC-------- (G-CAA)--- --------GC GA-AGCUCUU GAUCGAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAU GA-UGGCCAG GCUGUCUCCA CCCGAGACUC 3541 A|GUGAAAUU |GAACUCG-C UG(UGAAGAU G)CAGUGUAC CCGCGGC-AA GACGGAAAGA 3601 CCCCGUGA|A CCU-UUACUA U|AGCUUGAC ACU|GAACAU UGAGCCUUGA UGUGUAGGAU 3661 AGGUGGGAGG CUUUGAAG-- UGUGGAC(GC CA)GUCUGCA UGGAGCCGAC -C-UUGAAAU 3721 ACCACC|CUU U-AAUGUUUG AUG-UUCUAA -CGUUGA--- -CCCG(--UA -AUC)-CGGG 3781 UUGCG-GACA GUGUCUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|UCCUC C(UAA-AGAG 3841 UAAC)GGAGG A|G|C|ACGA AGGUUGGC|U AAUCCUGG(U CGGACA)UCA GGAGGU-UA| 3901 GU(G|CAAUG )GCAUAAGCC AGCUUGACUG CGAGCG(UGA CGG)CGCGAG CAGGUGC(GA 3961 AA)GC-AGGU |CAUAGUGAU CCGGUGGUUC UG(AAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UGA--UACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GAAG 4141 U---A)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGUGGUAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|CG-CUG 4261 GAGAACU|GA -|GGGGGGC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG CAUCACUGGU GUUCGGGU|U GUCAU(GC-C A-)AUGGCA- CUGCCCGGUA 4381 GCU-AAAUGC GGAAGAGAUA AGUGCU(GAA AGCAUCUA)A GCACGAAACU UGCCCC|GAG 4441 AUGAGUUCUC C|CU|GACCC U(-UUA--)A GGGUC-CUG- AAGG|-AA|C GUUG-(AAGA 4501 CG-A)CGACG -UUGAUAG|G CCGG|GUGUG -UAAGCGCA- -(GCGA-)-- UGCGU|UG-A 4561 GCUA|A|CCG GUACUAAUG- AACCGUGAG| GCUUAA-CCU U-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS AQUIFICALE 4759 bp RNA RNA 21-JAN-1998 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 4759 others ORIGIN 1 -x~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 ~~(~~~)~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~-~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~~ -~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 -~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-----~~~ 2221 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~---~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~-~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~) 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 4141 ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4381 ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~||||| // LOCUS A.aeolicus 4759 bp RNA RNA 30-OCT-1997 DEFINITION Aquifex aeolicus.; . ACCESSION AE0007 1 AE00 657 KEYWORDS . SOURCE Aquifex aeolicus. ORGANISM Aquifex aeolicus. REFERENCE 1 (bases 1 to 13534) AUTHORS . Deckert,G., Warren,P.V., Gaasterland,T., Young,W.G., Lenox,A.L ., Graham,D.E., Overbeek,R., Snead,M.A., Keller,M., Aujay,M., Huber,R., Feldman,R.A., Short,J.M., Olson,G.J. and Swanson,R.V TITLE Aquifex aeolicus The complete genome of the hyperthermophilic bacterium JOURNAL Nature 392 (6674), 353-358 (1998) STANDARD No information REFERENCE 2 (bases 1 to 13534) AUTHORS Deckert,G., Warren,P.V., Gaasterland,T., Young,W.G., Lenox,A.L., Graham,D.E., Overbeek,R., Snead,M.A., Keller,M., Aujay,M., Huber,R., Feldman,R.A., Short,J.M., Olson,G.J. and Swanson,R.V. TITLE Direct Submission JOURNAL Submitted (25-JUL-1997) Diversa Corporation, Genomics, San Diego, CA 92121 STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: AE000751, AE000709 Putative indicates no similarity to known proteins Hypothetical indicates similarity to a protein of unknown function. BASE COUNT 630 a 834 c 1075 g 417 t 1803 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------gu gcAAGUUAG- --UAAGGGCC CGGGGUGGAU 121 G|CCUCGG|C UCCCGG|AG| CC-GAUGAAG GG|CGUG(CA AA-GC-)U|- GCG-AUAAGC 181 CGGGUG|-GA GGC(G-CA-A -GA-)GCCGU UG-AGG-CCC GGAUG|CCCG AAUGGG(GAA 241 A)CCC|GGCA GGC-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---gacaa)- GCCUGCC-au c---CCGCC( 481 --uucg---- --)GGC-GG- ---g--aaG- G-GAAC|CG- GCCGAAGC|A A(AACC)UUU 541 UAGUA-GGCC GAGGAAAGGA AAUC(-AAUU --)GAGAC|G CC-CUGAGUA GC(GGCGA)G 601 CGA-AAG-GG GC-UCA-GCC CAAAcccugu gggu------ -gcc-(augg c)ggcggccu 661 uagcccacag gggguagcgg gacgugccug ---------g agggguc(cg cc)ggccccu 721 c----gggga guuacaaaac cccacccu-a gccGAAgucc c-c(u-ggaa u)g-gggcgc 781 |c(aua)gaG GG(UGAAAGC )CCCGU-Agg c-gaaagggu agg-ggucu- ---------- 841 --------cc cugaggcacg cuccc---AA GUACCGCGGC C(CACGUG-A AA)GGUCGCG 901 GGAAUCC-GG G-GG(GACCA C)CC-UCC-A AGGCUAA--- -GUACUCCCG GGAGACCGAU 961 AGCG-CA--u AGUACC(GUG A)-GGGA-AA GGUGAAAA-G AACCCC(ug- gc-)GGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCCC-GGGUC CACAA-GCCA GUGGAagggg --uc----c- 1081 --------(- ---uau---) ---------- --g-gg-ccc cGACUGCGUG CCU(UUU-GC 1141 AG|A)AUGA| -GCCGGGGAG UUGU-CCUC- AGGGGC-GAG GCUAAGCC-( --guca)-GG 1201 C-gaAGCCGU AGC(GAAA-) GCGAGUCC(G AA-UA)GGGC Gc-------- ---------- 1261 ---------- -----ca-aa G-UCCCUGGG GGCA-GACGC GAAGC-CGG- GCGA-UCUAC 1321 CCUUGCC|CU GGGUGAAGGC CGGG(UAAC) AC-CGGCUGG AGGCCCUAAG G-GGUCGGU( 1381 -GCUGCAAA) ACCGU|CCC- GUGAG-GUGA GGGUAGCGGU (-GAAAA)GC CaaucGCGCC 1441 CGGGGAUAGC UCGUUCUCCC CGAAAUGCAU (-CGAA)GUG CAGC|-GUCG CCCgu---u| 1501 -ccu|UCCCG G|AGGUAG|A GC-ACUGC-U GGGGCUA-GG |-GCCCC(ga aa-)GGGGUA 1561 CCGAACCCCG -GCAAACUCC GAA-UG-|CC G-G-G-A--a agg----aa| GGG-CGGCAG 1621 UGAGUC--CU C-GGGG(GAU AAG)CUCCGA -GGAC-AAGA GGG(-AAACA G-)CCCAGAC 1681 CGCCGGCUAA G-GC|CCCA- AAGUC-CGGG -C-UAA-GUG ------GUAA AGGAAGUC-C 1741 CCGUCCUAA- GACAGCCGGG AGGUUGGC(U UAGAGGCA)G CCAU-CCU|U (UAA)A|CAG 1801 UGC(GUAACA )GC|UGACCG GU-----CGA GG-GCG-GG- -GGC|GCCGA AAAU-UUAG- 1861 CGGGGCUUAA GCCCG-G|C| GCCGAAGCC| GCGG|gucac aggaguc(uc cg-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)-gac uccuguggc- GG-UAGGGGA G|-----Cgu 2221 u-ccc-ag-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --c-gcgc-u 2341 gaagcccaa- g-cc(-guga -)ggc--agg gugg|agcgc u-gGGAAGUG AGAAUCC-CG 2401 GC|AUG-AGU A-GGAGCGAA GGCAGG(UGA GAAA)CCUGC C|CGCC-GGA AGCCCAAGGG 2461 UUCGGC-GGC AAUG-(GAAA U)CA|G-CCG CCGGUUAGC| CGG|GACCCU AAGGCGAGGC 2521 C(GAug)aG- GCGU-AGCCG AUGG-GAAGC GGG-(UC-AA CAUU)C-CCG C|GC|ca-g- 2581 cu-cgg-ugg ag-------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------ccgg u------guc g--uga-cgc aggaggcua- ggcc-g-|gg c-ccg(cu-- 2761 auggaa-ug- --)cg-ggu- -|gcaa---- ---------- ---ggua-gu aggg------ 2821 -ggacgg-ga uagg(ca-aa -u-)cc|g-- ucccgucaua ---------- cccc-gagag 2881 ccg-augc|c gu-|------ ---------- -(-------) ---------- ----aagc-- 2941 --cggcc-ga cgcc-aca-| cugccaagaa acaacggc-g ccggcugug- ------ag-g 3001 -ccgag--cu g|C|CCGUAC CGGAAACC(G ACACA)GG|U GG-GCuGGG- U-(UAGGA)G 3061 CCUAAGGCGU ||-CGGGGGA ACUCCCCUC- ---------- ----AAGGAA CUCGGCAAGU 3121 UGGCCCCGUA CC(-UUCG)G AAGAAGGGGU |GCCCGC--u -ggggug--- -----uaggc 3181 c(cacgc-)g gccg------ ---aagccc- uggugGG-U| C(GCA)GUGA CAGGGCG-GU 3241 GC|CGACU-- ---GU(UUAC CAAAA)ACAC AGGACUACG| CAAACCC(GA AA------)G 3301 GGGAUGU-AU GUGGUCUGA- AGCCUGGCCA GU|GCCC-GA A-GGUGAAGG CCCCCGGU-- 3361 ---------- (GAUGA)--- ---------- ----GCUGGG GGCUgAAGCC |CGGGUAAAC 3421 |-GCC|GGCC GU(AACUAUG )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GCCGGG(U 3481 AAGU)UCCGG C|CUGCAUGA AUGGCCCAAC GA-GUGCCGC ACUGUCUCGA GGGGAGUCCC 3541 G|CCGAAAUU |GUAAUGC-C GG(UCAAGAU G)CCGGCUAC CCGCGGC-AG GACGGAAAGA 3601 CCCCGUGA|A GCU-UCACUG C|AGCCUGGC AUU|GGGCUC UGGCCUGUCC UGCGCAGGAU 3661 AGGUGGGAGC CUGGGAAG-- CCCCCGC(UC CG)GCGGGGG UGGAGGCGCC -G-GUGAGAU 3721 ACCACC|CUG G-ACAGGCUG GGG-UCCUAA -CCCAGC--- -GGGG(-uga -auc)-CCCC 3781 GCGGG-GACA GUGCUAGGUG GG-CAGUUUA GCUG(GGG)C GGCU|GCCUC C(UAA-AGAG 3841 UAAC)GGAGG C|G|C|CCAA AGGUCCCC|U CAGGCGGG(U CGGAAA)UCC GCCGUA-GA| 3901 GU(G|CAAGG )GCAUAAGGG GGCCUGACUG UGAGGC(CGA CGG)GCCGAG CAGCCGC(GA 3961 AA)GC-GGGG |CCUAGUGAC CCACCCGCUC CA(CGUGGG) AGG|GCGGGU GAUCAGC|GG 4021 AUAAAAGCUA CUC|CGGG|G AUAACAG|GC UAA--UCGCC CCCGAGA(G- CCC-ACA)UC 4081 GACGGGG-CG GU-UUGGUAC CUCGAUGUC| GGCU|C|CCC CC|AUCC|UG GGGCU(GAAG 4141 C---A)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGGGGGAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GCGA) -GACAGUU-C GGU-CCCUAU -CC|GCCGCG G-G|CG-CAG 4261 GAGCCUU|GA -|GGGGGUC- CGU------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGACGG|GGC AGGCACUGGU GUACCGGU|U GUCcc(ugga cu)gggGCA- gcGCCGGGUA 4381 GCC-AUCCUG CUACGGGAUA AGCGCU(GAA AGCAUCUA)A GCGCGAAGCC CACCCC|AAG 4441 AUAAGGGCUC C|Cu------ ---------- --------G- AAGG|-GC|C CCGG-(GAGA 4501 CU-A)CCGGG -UUGAUAG|G CCGC|AGGUG -GAAGCCCC- -(GUGA-)-- GGGGU|GA-A 4561 GCCG|A|GCG GUACUAAUC- GCCCGUUCG| ACUUGC-ACg cc~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS A.pyrophil 4759 bp RNA RNA 11-JAN-191 DEFINITION Aquifex pyrophilus. ACCESSION No information KEYWORDS No information. SOURCE Aquifex pyrophilus. ORGANISM Aquifex pyrophilus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: Y15785 LOCUS APY15785 2986 bp DNA BCT 11-DEC-1997 DEFINITION Aquifex pyrophilus 23S rRNA gene. ACCESSION Y15785 NID g2687824 KEYWORDS 23S ribosomal RNA; 23S rRNA gene. SOURCE Aquifex pyrophilus. ORGANISM Aquifex pyrophilus Eubacteria; Aquificales; Aquificaceae; Aquifex. REFERENCE 1 (bases 1 to 2986) AUTHORS Ludwig,W., Strunk,O., Klugbauer,S., Klugbauer,N., Weizenegger,M., Neumaier,J., Bachleitner,M. and Schleifer,K.H. TITLE Bacterial phylogeny based on comparative sequence analysis JOURNAL Electrophoresis In press REFERENCE 2 (bases 1 to 2986) AUTHORS Ludwig,W. TITLE Direct Submission JOURNAL Submitted (04-DEC-1997) W. Ludwig, Lehrstuhl fuer Mikrobiologie, Technische Universitaet Muenchen, Muenchen, FRG FEATURES Location/Qualifiers source 1..2986 /organism="Aquifex pyrophilus" /strain="DSM 6858" /db_xref="taxon:2714" rRNA <1..>2986 /gene="23S rRNA" /product="23S ribosomal RNA" gene 1..2986 /gene="23S rRNA" BASE COUNT 642 a 843 c 1088 g 413 t ORIGIN BASE COUNT 642 a 843 c 1088 g 413 t 1773 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- ------gggu gcAAGUUAG- --UAAGGGCC CGGGGUGGAU 121 G|CCUCGG|C UCCUGG|AG| CC-GACGAAG GG|CGUG(CA AA-GC-)U|- GCG-AAAAGC 181 CGGGCG|-GA GGC(G-CA-A GGA-)GCCUG UG-AGG-CCC GGAUG|CCCG AAUGGG(GAA 241 A)CCC|GGCA GGC-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---ggcaa)- GCCUGCC-ag u---CCGCC( 481 --uuuu---- --)GGC-GG- ---g--agG- G-GAAC|CG- GCCGAAGC|A A(AACC)UUU 541 UAGUA-GGCC GAGGAAAGGA AAUC(-AACC --)GAGAC|G CC-CCGAGUA GC(GGCGA)G 601 CGA-AAG-GG GC-AGA-GCC UAAAcccugu gggu------ -gcc-(augg c)ggc---cu 661 uagcccacag ggggua-cgg gacgugccug ---------g agggguc(cg cc)ggccccu 721 c----gggga guuacaaaac cccacccu-a gccGAAgucc c-c(u-ggaa u)g-gggcgc 781 |c(aca)gaG GG(UGAAAGC )CCCGU-Agg c-gaaagggu agg-ggucu- ---------- 841 --------cc cugaggcacg auccc---GA GUACCGCGGC C(CACGUG-A AA)GGUCGCG 901 GGAAUCA-GG G-GG(GACCA C)CC-UCC-A AGGCUAA--- -GUACUCCC- GGAGACCGAU 961 AGCG-CA--u AGUACC(GUG A)-GGGA-AA GGUGAAAA-G AACCC-(ug- gc-)GGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCCC-GGGUC CACAA-G-Ug gcac--gg-- ---------- 1081 --------(- cccuccc--) ---------- ---------c cGACUGCGUG CCU(UUU-GC 1141 AG|A)AUGA| -GCCGGGGAG UUGU-CCUC- AGGGGC-GAG GCUAAGCC-( --gaca)-GG 1201 C-gaAGCCGU AGC(GAAA-) GCGAGUCC(G AA-UA)GGGC Gc-------- ---------- 1261 ---------- ------a-aa G-UCCCUGGG GGCA-GACGC GAAGC-CGG- GCGA-UCUAC 1321 CCUUGCC|CU GGGUGAAGGC CGGG(UAAC) AC-CGGCUGG AGGCCCUAAG G-GGUCGGU( 1381 -GCUGCAAA) ACCGU|CCC- GUGAG-GUGA GGGUAGCGGU (-GAAAA)GC CaaucGCGCC 1441 CGGGGAUAGC UCGUUCUCCC CGAAAUGCAU (-CGAA)GUG CAGC|-GUCG CCCgc---u| 1501 -ccu|UCCCG G|AGGUAG|A GC-ACUGC-U AGGGCUA-GG |-GCCCC(-a aa-)GGGGUA 1561 CCGAACCCUG -GCAAACUCC GAA-UG-|CC G-G-G-A--a agg----ga| GGG-CGGCAG 1621 UGAGUC--CU C-GGGG(GAU AAG)CUCCGA -GGACcAAGA AGG(-AAACA A-)CCCAGAC 1681 CGCCGGCUAA G-GC|CCCA- AAGUC-CGGG -C-UAA-GUG ------GUAA AGGAGGUC-C 1741 CCGCCCUAA- GACAGCCGGG AGGUUGGC(U UAGAGGCA)G CCAU-CCU|U (UAA)A|CAG 1801 UGC(GUAACA )GC|UGACCG GU-----CGA GG-GCG-GG- -GGC|GCCGA AAAU-UUAG- 1861 CGGGGCUCAA GCCCG-G|C| GCCGAAGCC| GCGG|gucac acgagcc(uc cg-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)-ggc ucguguggc- GG-UAGGGGA G|-----Cgu 2221 u-ccc-ag-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --c-gcgc-u 2341 gaagcccaa- g-cc(-gcga -)ggc--ggg gugg|agcgc u-ggGAAGUG AGAAUCC-CG 2401 GC|AUG-AGU AgGGAGCGAA GGCCGG(UGA GAAG)CCGGC C|CGCC-GGA AGCCCAAGGG 2461 UUCGGC-GGC AAUG-(GAAA U)CA|G-CCG CCGGUUAGC| CGG|GACCCU AAGGCGAGGC 2521 C(GAAg)aG- GCGU-AGCCG AUGG-GAAGG GGG-(UC-AA CAUU)C-CCC C|GC|ca-g- 2581 cu-cgg-ugg ag-------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------ccgg u------guc g--uga-cgc aggaggcua- ggcc-g-|gg c-ccg(cu-- 2761 auggaa-ug- --)cg-ggu- -|guaa---- ---------- ---ggua-gu aggg------ 2821 -ggacgg-aa cagg(ca-aa -u-)cc|g-- uuccgucaaa ---------- cccc-gagag 2881 ccg-augc|c gu-|------ ---------- -(-------) ---------- ----aagc-- 2941 --cggcc-ga cgcc-aca-| cugccaagaa acaacggc-g ccggcugag- ------ag-g 3001 -ccgag--cu g|C|CCGUAC CGGAAACC(G ACACA)GG|U GG-GCuGGG- U-(UAGGA)G 3061 CCUAAGGCGU ||-CGGGGGA ACUCCCCUC- ---------- ----AAGGAA CUCGGCAAGU 3121 UGGCCCCGUA CC(-UUCG)G AAGAAGGGGU |GCCCGCg-u -uaggug--- -----uaggc 3181 c(cgagc-)g gccg------ ---aagccg- aggcgGG-U| C(GCA)GUGA CAGGGCG-GU 3241 GC|CGACU-- ---GU(UUAC CAAAA)ACAC AGGACUACG| CAAACCC(GA AA------)G 3301 GGGAUGU-AU GUGGUCUGA- AGCCUGGCCA GU|GCCC-GA A-GGUGAAGG CCCCCGGU-- 3361 ---------- (GAUGA)--- ---------- ----GCUGGG GGCUgAAGCC |CGGGUAAAC 3421 |-GCC|GGCC GU(AACUAUG )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GCCGGG(U 3481 AAGU)UCCGG C|CUGCAUGA AUGGCCCAAC GA-GUGCCGC ACUGUCUCGA GGGGAGUCCC 3541 G|CCGAAAUU |GUAAUGC-C GG(UCAAGAU G)CCGGCUAC CCGCGGC-AG GACGGAAAGA 3601 CCCCGUGA|A GCU-UCACUG C|AGCCUGGC AUU|GGGCUC UGGCCUGUCC UGCGCAGGAU 3661 AGGUGGGAGC CUGGGAAG-- CCCCCGC(UC CG)GCUGGGG UGGAGGCGCC -G-GUGAGAU 3721 ACCACC|CUG G-ACAGGCUG GAG-UCCUAA -CCCAGC--- -GGGG(-uga -agc)-CCCC 3781 GCGGG-GACA GUGCUAGGUG GG-CAGUUUA GCUG(GGG)C GGCU|GCCUC C(UAA-AAGG 3841 UAAC)GGAGG C|G|C|CCAA AGGUCCCC|U CAGGCGGG(U CGGAAA)UCC GCCGAA-GA| 3901 GU(G|CAAGG )GCAGAAGGG GGCCUGACUG UGAGGC(CGA CAG)GCCGAG CAGCCGC(GA 3961 AA)GC-GGGG |CCUAGUGAC CCACCCGCUC CA(CGUGGG) AGG|GCGGGU GAUCAGC|GG 4021 AUAAAAGCUA CUC|CGGG|G AUAACAG|GC UAA--UCGCC CCCGAGA(G- CCC-ACA)UC 4081 GACGGGG-CG GU-UUGGUAC CUCGAUGUC| GGCU|C|CCC CC|AUCC|UG GGGCU(GAAG 4141 C---A)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGGGGGAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GCGA) -GACAGUU-C GGU-CCCUAU -CC|GCCGCG G-G|CG-CAG 4261 GAGCCUU|GA -|GGGGGUC- CGU------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGACGG|GGC AGGCUCUGGU GUACCGGU|U GUCcc(ugga cu)gggGCA- gcGCCGGGUA 4381 GCC-ACCCUG CUACGGGAUA AGCGCU(GAA AGCAUCUA)A GCGCGAAGCC CACCCC|AAG 4441 AUAAGGGCUC C|Cu------ ---------- --------G- AAGG|-GC|C CUCC-(GAGA 4501 CU-A)GGAGG -UAGAUAG|G CCGC|AGGUG -GAAGCCCC- -(GCAA-)-- GGGGU|AG-A 4561 GCCG|A|GCG GUACUAAUC- GCCCGUUCG| ACUUGC-ACg cc------|g guggguggag 4621 guaugggcuu uauucuguug acgauugccc ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS THERMOTOGA 4759 bp RNA RNA 17-JAN-1993 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 4759 others ORIGIN 1 -x~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~-)~|- ~~~~~~~~~~ 181 ~~~~~~|-~~ ~~~(~-~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~--- ---------- ---------- 301 -----~~~~~ ~~~~~~~~~~ ~~~~~~---- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- -----~-~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~|~ ~~-~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---- 721 ---~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~-~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~-- -~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ -~~~-~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| -~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 -~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 -~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~-~ ~~~~~~~~~~ |-~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~-~~~~| ~~~~~~~~~~ 1621 ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~-~~~~~ ~-~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~-~~~ ~----~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~-~- -~~-|~~~~~ ~~~~-~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~|-----~~~ 2221 ~-~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~- ~-~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 2401 ~~|~~~~-~~ ~-~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~-~~ ~~~~~~-~~~ ~~~~|~~~~- 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~------~~~ ~~--~~-~~~ ~~~~~~~~~- ~~~~-~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ---------- --~~~~~~~~ ~~~~~~~~-- 2821 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~----~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 --~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~-~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~- ---~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~---~~~~~ 3301 ~~~~~~~~-~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~-~~ ~-~~-~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~( ~~~)~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ 3721 ~~~~~~|~~~ ~~~-~~~~~~ ~~~~~-~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~-~~-~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~|~|~|~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~---~ ~~~~~~-~~~ 3901 ~|~~(~|~~~ ~~)~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~-~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~~~|~~~~ ~~~~~~~~~| 4021 ~~~~~~~~~~ ~~~~~|~~~~ |~~~~~~-~| ~~~~~--~~~ ~~~~~~~~~( ~~~~~~~~~) 4081 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~|~~~~|~~~ ~~~~~~~~~| ~~~~~(~~~~ 4141 ~~~~~--)-~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ -~~~~~~|~~ ~~~~~~~|~~ 4261 ~~~~~~~~~~ -|~-|~~~~~ -~~~~~~--- ---------- -~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4381 ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 |~~~~~~~~~ ~~~~~|~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~|~~~~~-~ 4501 ~~~~~~-~~~ ~~~~~~~~~~ ~~|~~~~~|~ ~~~~~-~~~~ ~~~~~~~~~~ ~--~~~~~~| 4561 ~~~~|~~~-~ |~~~~~~~~~ ~~~~~~~~-- ~~~|~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~||||| // LOCUS F.islandic 4759 bp RNA RNA 11-DEC-1997 DEFINITION Fervidobacterium islandicum.; 23S ribosomal RNA; 23S rRNA gene. ACCESSION Y15790 KEYWORDS 23S ribosomal RNA; 23S rRNA gene. SOURCE Fervidobacterium islandicum. ORGANISM Fervidobacterium islandicum. REFERENCE 1 (bases 1 to 2992) AUTHORS ,M., Neumaier,J., Bachleitner,M. and Schleifer,K.H. Ludwig,W., Strunk,O., Klugbauer,S., Klugbauer,N., Weizenegger TITLE Bacterial phylogeny based on comparative sequence analysis JOURNAL Electrophoresis In press STANDARD No information REFERENCE 2 (bases 1 to 2992) AUTHORS Ludwig,W. TITLE Direct Submission JOURNAL Submitted (04-DEC-1997) W. Ludwig, Lehrstuhl fuer Mikrobiologie, Technische Universitaet Muenchen, Muenchen, FRG STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: Y15790 BASE COUNT 717 a 725 c 1062 g 488 t 1767 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ----uggugg 61 agggucauug aaaagugc|a uaggguaaGG UGAAGGUAC- --UAAGGGCA CGCAGUGGAU 121 G|CCUAGG|C GGCAGG|AG| GC-GAGGAAG GG|CGUG(GC AA-GC-)U|- GCG-AAAAGC 181 CUGGGG|-GA GCU(G-CA-A GCG-)AGCGU UG-AUC-CCA GGAUU|CCCG AAUGGG(GCA 241 A)CCU|Gcac ggga(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---ggcaa)u cccgugc--- gc-cc----( 481 ---gaga--- --)-----gg -g-c----g- cgagAC|CC- GGGGAAGU|G A(AACA)UCU 541 CAGUA-CCCG GAGGAAGAGA AAUC(-AAGC --)GAGAU|U CC-CUGAGUA GA(GGCGA)U 601 CGA-AAG-GG GA-GGA-GCC UAAAccagc- ---------- ---g-(uuag -)---u---- 661 -------gcu gggguugugg gacacagcu- ------aggc ugaga-ccgc -ucugaggc- 721 ---------- ---------- -guugugu-a gccGAAc-ag u-c(u-ggga a)g-gcuggc 781 |c(gua)gaG GG(UGAUAGC )CCCGU-Agg c-gaaacgca acgcg-cagg agu------- 841 ---------- ---ggcugug auccc---GA GUAGCGCGGG A(CUCGAG-G AA)UCCCGCG 901 UGAAuca-GG G-GG(GACCA C)CC-UCC-A AGGCUAA--- -AUACUACCU GCCGACCGAU 961 AGCGCAAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(gg- aa-)GGGGA- 1021 -GUGAAA-GA GGACCUGAAA CUGC-GUGCC UACAA-G-AA GUCGGAGCCC ---------- 1081 --------(- ---gcga--) ---------- -------ggG UGACGAUGUG CCU(UUU-GA 1141 UU|A)AUGA| -GCCUGGGAG UUAC-CGUA- CCUGGC-GAG GUUAAGCC-( gguaga)-GG 1201 C-GGAGCCGA AGC(GAAA-) GCGAGUCC(G AA-GA)GGGC G--------- ---------- 1261 ---------- ------g-aa g-ucagguac gguA-GACCC GAAGC-CGG- GUGA-GCUAC 1321 CCAUGGG|CA GGAUGAAGGU GGGG(UAAA) AC-CCACUGG AGGUCCGAAC C-GGUGGAU( 1381 -CGUGAAAA) AUCCU|CGG- AUGAC-CUGU GGGUAGGAGU (-GAAAA)GC UAACCGAACC 1441 CGGUGAUAGC UGGUUCUCCC CGAAAUGCAU (-UGAG)GUG CAGC|-CUCG GCAgu---u| 1501 -cug|UGGUG G|AGGUAG|A GC-ACUGA-U AGGGCUA-GU |-GGG--(gu ua-)--CCU- 1561 GCGAACCCUG -UCAAACUGC GAA-UG-|CC A-C-C-A--- cacu---aa| UGC-CGGGAG 1621 UGAGCC--CG U-GGGG(GAU AAG)CUCCAC -GGAC-GAGA GGG(-GAACA A-)CCCAGAC 1681 CGUCGGCUAA G-GG|CCCC- AAGAG-GUGG -C-UAA-GUG -ugaagAGGA AGGAUGUG-G 1741 UGCGUCCUA- GACAACCGGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAG 1801 UGC(GUAACA )GC|UCACCG GU-----CGA GA-CGC-AC- -UGC|GCCGA AAAU-GUGC- 1861 CGGGGCUCAA GCCAC-C|C| UCCGAAGCC| ACGG|aacca gc-----(gg aa-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --gcugguu- GG-UAGGGGA G|-----Cgu 2221 u-ccg-cgg- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-AGGG-A 2341 GAAGGUA-GA C-CC(-GUGA -)GGG--CUA CUGG|ACGAG G-CGGAAGUG AGAAUCC-AG 2401 GC|AUG-AGU A-UACGAG-A GGAUGG(UGA GAAU)CCAUC C|CCCC-GAA AGCCUAAGGG 2461 UACCUG-GGG AAGG-(UUCG U)CC|G-CCC AGGGUUAGU| CGG|GA-CCU AAGGUAAACC 2521 C(GAAA)-G- GGGU-ACCCG AUGG-GAAAC CGG-(UU-AA UAUU)C-CGG U|AC|ca-c- 2581 cu-gcg-uau cg-------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---auacugu ag-----gcg g--gga-cgc aggaggcua- agcu-cc|-g g-gga(ua-a 2761 guggca-aa- --)uc-ccu- -|ccaa---- ---------- ---gcgg-uu aggc-g-a-- 2821 agagggc-ug uagg(ua-ag -u-)cc|g-- cagcc-uga- ---------- -gcu-gagcc 2881 gug-aagg|g ga-|------ ------gagc c(-uucg--) ggcuc----- -------aac 2941 --ggagc-ug acgc-cacg| cugccgagaa a-agccgcgu gcag------ ----ugau-a 3001 -cgugg--gu g|C|CCGUUC CGCAAACC(G ACACA)GG|U AG-GCGGGC- U-(GAGAA)A 3061 GCUAAGGGGA ||GCGGGAUA ACCCUUGCC- ---------- ----AAGGAA CUCGGCAAAU 3121 UGGCCCCGUA AC(-UUCG)G GAGAAGGGGU |GCUACGgua -gguugaacc caggggaagc 3181 c(-gcaa-)g gcggaaacug ggggaggcc- gaGGUAG-C| C(GCA)GUGA CAAGGCC-CU 3241 GG|CGACU-- ---GU(UUAC CAAAA)ACAC AGGUCUCUG| CGAACUC(GA UG---A--)G 3301 AGGAAGU-AU AGGGACUGA- CGCCUGCCCG GU|GCCG-GA A-GGUUAAGG GGAGGGGU-- 3361 ---------- (G-caa)--- ---------- ----GCUCCG AACCGAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCAUGA AUGGCGUAAC GA-CUGGGGC ACUGUCUCGG CAGGGGACCC 3541 G|GUGAAAUU |UCAGUCU-G GG(UGAAGAU G)CCCAGUAC CCGCAGC-UA GACGGAAAGA 3601 CCCCGUGG|A GCU-UUACUG U|AGCCUGGU AUU|GUGCUC UGUUGCGGCG UGUACAGGAU 3661 AGGUGGGAGG CUGAGAAC-- CGUGCUC(GC CA)GGGUGCG GGGAGCCGCC -G-GUGGGAU 3721 ACCACC|CUC G-UCGCAGCG GAG-UUCUAA -CCUACG--- -CGUG(ugga -gag)-CACG 3781 CGAGG-GACA GUGCCAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AGGG 3841 UAAC)GGAGG C|G|C|GCAA AGCUCGGC|U CAGGUGGG(U UGGAAA)UCC ACCGUA-GA| 3901 GU(G|CAAGG )GCAAAAGCC GGGCUGACUG CGAGAC(CGA CGG)GUCGAG CAGAGGG(GA 3961 AA)CC-CGGU |CCUAGUGAC CCGGCGACUC CG(AGUGGA) AGG|GUCGUC GAUCAAC|GG 4021 ACAAAAGUUA CCC|CGGG|G AUAACAG|GC UAG--UCUAG CCCGAGA(G- UUC-ACA)UC 4081 GACGGCU-AG GC-UCGGCAC CUCGAUGUC| GGCU|C|AUC CC|AUCC|UG GGGCU(GAAG 4141 C---A)-GGU CCCAAGGGU| UAGGC(UGUU C)GC-CUAUU AAAGGGGUAC G-UGAGCUGG 4201 GUUCA-GACC |GUC(GUGA) -GACAGGU-C GGU-CCCUAU -CU|GCUGCG G-G|CG-CAG 4261 GAGGCUU|GA -|GGAGGGU- CGC------- -------CCU (UUGUAC(GA GA)GGACC)A 4321 GGGUGA|GGG AGCCUCUGGU GUACCAGC|U GUCCU(GC-C A-)AGGGCAu acGCGGGGUA 4381 GCC-ACGCUC CUGAGCGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAGCG CGCUCC|AAG 4441 AUGAGGCCUC ---------- ---------- ---------- AAGG|-CC|G GUCC-(GAGA 4501 AG-A)GGACC -UUGAUAG|G CCGG|UGGUG -GGAGCACA- -(GCGA-)-- UGUGU|UG-A 4561 GCCA|A|CCG GUACUAAUA- GGCCGA-CU| CCUUCA-CCU UG------|- acccuaugca 4621 cuuuugaaug acccugggug ccg~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS T.maritima 4759 bp RNA RNA 11-JAN-191 DEFINITION Thermotoga maritima. ACCESSION No information KEYWORDS No information. SOURCE Thermotoga maritima. ORGANISM Thermotoga maritima. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: M67498 LOCUS TMORRNAA 3023 bp ss-rRNA RNA 28-MAY-1992 DEFINITION Thermotoga maritima large subunit ribosomal RNA, complete. ACCESSION M67498 KEYWORDS large subunit ribosomal RNA. SOURCE Thermotoga maritima rRNA. ORGANISM Thermotoga maritima Prokaryota; Bacteria; Eubacteriomycetes; Eubacteriales. REFERENCE 1 (bases 1 to 3023) AUTHORS Achenbach,L. and Woese,C.R. TITLE Sequence of the ribosomal operon of Thermotoga maritima JOURNAL Unpublished (1991) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 1..3023 /product="large subunit ribosomal RNA" /gene="large subunit rRNA" BASE COUNT 660 a 812 c 1093 g 458 t ORIGIN BASE COUNT 660 a 812 c 1093 g 458 t 1736 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UCAAGGUAC- --UAAGGGCA CGCGGUGGAU 121 G|CCUUGG|C GGCGGG|AG| GC-GAUGAAG GG|CGUG(GC AA-GC-)U|- GCG-AUAAGC 181 CCGGGG|-GA GCC(G-CA-A GCA-)GGCGU UG-AUC-CCG GGAUU|CCCG AAUGGG(GAA 241 A)CCU|GGGU GGCc(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- -gu--uga)g GCCACUC-Gc cg-cc----( 481 ---GAAA--- --)-----gg -c-g--gUG- CgacAC|CG- GGGGAAGU|G A(AACA)UCU 541 CAGUA-CCCC GAGGAAAAGA AAUC(-AACC --)GAGAU|U CC-CCUAGUA GC(GGCGA)G 601 CGA-ACG-GG GA-GGA-GCC CAAAccagcg -uggugucaa agcc-(cgug -)---ggcgu 661 ugccac-gcu gggguugugg gacacggcc- ------gggc gaggc-cacg -gacucgcc- 721 -----gggga guuacaaauc ccuccucu-a gccGAAc-ca c-c(u-ggga a)g-gugggc 781 |c(gga)gaG GG(UGACAGC )CCCGU-Agg c-gaaagggg aggga-cucc cug------- 841 ---------- ---ggccgug cuccc---GA GUACCACGGG A(CACGUG-G AA)UCCCGUG 901 GGAAGCU-GG G-GG(GACCA C)CC-UCC-A AGGCUAA--- -AUACUACCC GCCGUCCGAU 961 AGCGC-AC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(gg- aa-)GGGGA- 1021 -GUGAAA-GA GGACCUGAAA CCGC-GUGCC UACAA-G-AA GUCGGAGCCC --CC------ 1081 --------(- ---auuu--) ---------- ----GG-GGG UGACGGCGUG CCU(UUU-GA 1141 UU|A)AUGA| -GCCCGCGAG UUGC-CGUC- GGUGGC-GAG GUUAAGCC-( gacgaa)-GG 1201 C-GUAGCCGU AGC(GAAA-) GCGAGUCC(G AA-CA)GGGC Gc-------- ---------- 1261 ---------- ------u-ca G-UCACCGGC GGCA-GACCC GAAGC-CGG- GUGA-GCUAC 1321 CCCUGGG|CA GGGUGAAGGU GGGU(UAAA) AC-CCACUGG AGGCCCGAAC C-GGUGGAC( 1381 -AGUGAAAA) GUCCU|CGG- AUGAC-CUGG GGGUAGGAGU (-GAAAA)GC UAACCGAACC 1441 CGGUGAUAGC UGGUUCUCCC CGAAAUGCAU (-UGAG)GUG CAGC|-CUCG GGCgg---u| 1501 -cug|UGCAG G|GGGUAG|A GC-ACUGA-U GGGGCUA-GG |-GGG--(gu uu-)--CCU- 1561 CCGAACCCCG -UCAAACUCC GAA-UC-|CC U-G-C-A--- caca---aa| GCC-CGGGAG 1621 UGAGCC--CG C-GGGG(GAU AAG)CUCCGC -GGAC-GAGA GGG(-GAACA A-)CCCAGAC 1681 CGCCGGCUAA G-GG|CCCG- AAGAG-GUGG -C-UAA-GUG ------GUAA AGGAUGUG-G 1741 AGCGCCUAA- GACAGCUGGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAG 1801 UGC(GUAACA )GC|UCACCA GC-----CGA GG-CGC-UC- -UGC|ACCGA AAAU-GUAA- 1861 CGGGGCUCAA GCCAC-C|C| CCCGAAGCC| GCGG|gucag uaccucc(gc u--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)-gga gguacuggc- GG-UAGGGGA G|-----CUU 2221 U-CCG-CUG- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-AGGG-U 2341 GAAGGCG-GA C-CC(-GCGA -)GGG--CCG CUGG|ACGAG G-CGGAAGUG AGAAUGC-GG 2401 GC|AUG-AGU A-CGCGAA-A GGAGGG(UGA GAAU)CCCUC C|CCCC-GUA AGCCCAAGGG 2461 UACCUG-GGG AAGG-(UUCG U)CC|G-CCC AGGGUUAGC| CGG|GACCCU AAGGUGAACC 2521 C(GAAA)-G- GGGU-AGCCG AAGG-GAAGC CGG-(UU-AA UAUU)C-CGG C|GC|ca-c- 2581 cu-gcg-guc ga-------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---ugguacg a------ggg g--uga-cgc aggagggua- ggcg-cc|-g g-ggg(ca-a 2761 guggca-ug- --)cc-ccu- -|ccaa---- ---------- ---gcgg-uu agggcg-a-- 2821 ugacggg-cg uagg(ua-aa -u-)cc|g-- cgccc-cga- ---------- gccu-gagcc 2881 gug-augg|g ga-|------ -----ggucc c(-uucg--) gggacc---- -------aac 2941 --ggcgc-ug accc-caca| cugccgagaa a-aaccuc-g cguaccgcuu g-----ag-a 3001 ccguag--gu g|C|CCGUUC CGCAAACC(G ACACA)GG|U GG-GCGGGC- U-(GAGAA)G 3061 GCUCAGGGGA ||GCGGGUUA ACCCUCGCC- ---------- ----AAGGAA CUCGGCAAAU 3121 UGGCCCCGUA AC(-UUCG)G GAGAAGGGGU |GCCGCGuua -gggugaacc caggggaagg 3181 g(-gcaa-)c ccggaaacug ggggagccc- gaGGCGG-U| C(GCA)GUGA CAAGGCC-CU 3241 GG|CGACU-- ---GU(UUAC CAAAA)ACAC AGGUCUCUG| CUAACUC(GA AA---A--)G 3301 AGGAAGU-AU AGGGACUGA- CGCCUGCCCA GU|GCCG-GA A-GGUUAAGG GGAGGGGUGa 3361 ggcuccc--- (cuugu)--- ---gggagcg u--AGCUCCG ACCCGAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCAUGA AUGGCGUAAC GA-CUGGGGC ACUGUCUCGG CGGGGGGCCC 3541 G|GCGAAAUU |UCAGUCU-G GG(UGAAGAU G)CCCAGUAC CCGCGGC-UA GACGGAAAGA 3601 CCCCGUGG|A GCU-UUACUG C|AGCCUGGU AUU|GGGCUC UGGUGCAUCG UGUAUAGCAU 3661 AGGUGGGAGG CUGUGAAG-- CCGCCUC(GC CA)GGGGCGG UGGAGCCGCC -A-GUGGAAU 3721 ACCACC|CUC G-GUGCACUG GAG-UCCUAA -CCUGAC--- -CCUG(ugaa -gag)-CAGG 3781 GUGGG-GACA GUGCCAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|ACCUC C(UAA-AAGG 3841 UAAC)GGAGG U|G|U|GCAA AGGUCGGC|U CAGGUGGG(U UGGAAA)UCC ACCGCA-GA| 3901 GU(G|CAAGG )GCAUAAGCC GGCCUGACUG CGAGGC(CGA CAG)GCCGAG CAGGGGG(GA 3961 AA)CC-CGGC |CCUAGUGAC CCGGCGGUCC CG(UGUGGA) AGG|GCCGUC GAUCAAC|GG 4021 AUAAAAGUUA CCC|CGGG|G AUAACAG|GC UGG--UCCCG CCCGAGA(G- UUC-ACA)UC 4081 GACGGCG-GG GU-UCGGCAC CUCGAUGUC| GGCU|C|AUC CC|AUCC|UG GGGCU(GAAG 4141 C---A)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGGGGUAC G-UGAGCUGG 4201 GUUCA-GACC |GUC(GUGA) -GACAGGU-C GGU-CCCUAU -CU|GCCGCG G-G|CG-UAG 4261 GAGGCUU|GA -|GGGGGGU- CCU------- -------CCC (UUGUAC(GA GA)GGACC)G 4321 GGAGGA|GGG GGCCUCUGGU GUACCGGC|U GUCGC(GC-C A-)GCGGCAu acGCCGGGUA 4381 GCU-ACGCCC CUAAGCGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAGCG CGCCCC|AAG 4441 AUUAGGCCUC C|CA|UCCCG -(-UUA--)- AGGGA--GU- AAGG|-CC|G GUCC-(GAGA 4501 AG-A)GGACC -UUGAUAG|G CCGG|GGGUG -UAAGCGCC- -(GCAA-)-- GGCGU|UG-A 4561 GCCC|A|CCG GUACUAAUC- GGCCGA-GG| CCUUGA-CCU CC------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS RADIO-RESI 4759 bp RNA RNA 17-JAN-1993 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 4759 others ORIGIN 1 -x~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~-)~|- ~~~~~~~~~~ 181 ~~~~~~|-~~ ~~~(~-~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~--- ---------- ---------- 301 -----~~~~~ ~~~~~~~~~~ ~~~~~~---- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- -----~-~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~|~ ~~-~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---- 721 ---~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~-~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~-- -~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ -~~~-~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| -~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 -~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 -~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~-~ ~~~~~~~~~~ |-~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~-~~~~| ~~~~~~~~~~ 1621 ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~-~~~~~ ~-~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~-~~~ ~----~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~-~- -~~-|~~~~~ ~~~~-~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~|-----~~~ 2221 ~-~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~- ~-~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 2401 ~~|~~~~-~~ ~-~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~-~~ ~~~~~~-~~~ ~~~~|~~~~- 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~------~~~ ~~--~~-~~~ ~~~~~~~~~- ~~~~-~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ---------- --~~~~~~~~ ~~~~~~~~-- 2821 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~----~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 --~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~-~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~- ---~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~---~~~~~ 3301 ~~~~~~~~-~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~-~~ ~-~~-~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~( ~~~)~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ 3721 ~~~~~~|~~~ ~~~-~~~~~~ ~~~~~-~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~-~~-~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~|~|~|~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~---~ ~~~~~~-~~~ 3901 ~|~~(~|~~~ ~~)~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~-~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~~~|~~~~ ~~~~~~~~~| 4021 ~~~~~~~~~~ ~~~~~|~~~~ |~~~~~~-~| ~~~~~--~~~ ~~~~~~~~~( ~~~~~~~~~) 4081 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~|~~~~|~~~ ~~~~~~~~~| ~~~~~(~~~~ 4141 ~~~~~--)-~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ -~~~~~~|~~ ~~~~~~~|~~ 4261 ~~~~~~~~~~ -|~-|~~~~~ -~~~~~~--- ---------- -~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4381 ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 |~~~~~~~~~ ~~~~~|~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~|~~~~~-~ 4501 ~~~~~~-~~~ ~~~~~~~~~~ ~~|~~~~~|~ ~~~~~-~~~~ ~~~~~~~~~~ ~--~~~~~~| 4561 ~~~~|~~~-~ |~~~~~~~~~ ~~~~~~~~-- ~~~|~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~||||| // LOCUS T.thermoph 4759 bp RNA RNA 11-JAN-191 DEFINITION Thermus thermophilus. ACCESSION No information KEYWORDS No information. SOURCE Thermus thermophilus. ORGANISM Thermus thermophilus. REFERENCE 1 (bases 1 to 2992) AUTHORS Ludwig,W. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X12612 LOCUS X12612 2915 bp UNA 15-JUN-1989 DEFINITION Thermus thermophilus gene for 23S rRNA. ACCESSION X12612 REFERENCE 1 (bases 1 to 2915; enum. 1 to 2915) AUTHORS Ludwig,W. TITLE ; JOURNAL Unpublished (1988) see COMMENT for author address STANDARD unannotated staff_entry REFERENCE 2 (bases ??) AUTHORS Hoepfl,P., Ludwig,W., Hartmann,R.K., Ulbrich,N. and Schleifer,K.H. TITLE Complete nucleotide sequence of 23S ribosomal RNA gene from Thermus thermophilus HB8 JOURNAL Nucleic Acids Res. 16, 9043-9043 (1988) STANDARD unannotated staff_entry BASE COUNT 636 a 794 c 1066 g 419 t ORIGIN BASE COUNT 636 a 794 c 1066 g 419 t 1844 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UCAAGAUGG- --UAAGGGCC CACGGUGGAU 121 G|CCUCGG|C ACCCG-|AG| CC-GAUGAAG GA|CGUG(GC UA-CC-)U|- GCG-AUAAGC 181 CAGGGG|-GA GCC(G-GU-A GCG-)GGCGU GG-AUC-CCU GGAUG|UCCG AAUGGG(GGA 241 A)CCC|GGCC GGCG(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----ggaa)C GCCGGUC-AC CG-CGC---( 481 ---uuuu--- --)----GCG -C-GG-g-G- G-gaAC|CU- GGGGAACU|G A(AACA)UCU 541 CAGUA-CCCA GAGGAGAGGA AAGA(-GAAA --)UCGAC|U CC-CUGAGUA GC(GGCGA)G 601 CGA-AAG-GG GA-CCA-GCC UAAAccgucc -gg------- -----(cuug u)-------- 661 ----ccgggc ggggucgugg ggcccucgg- ---------- ---------- ---------- 721 ---------- acaccgaauc cccagccu-a gccGAAg-cu g-u(u-ggga a)g-cagcgc 781 |c(aga)gaG GG(UGAAAGC )CCCGU-Agg c-gaaaggug ggg-ggaua- ---------- 841 ---------- --ggugaggg uaccc---GA GUACCCCGUG G(UUCGUG-G AG)CCAUGGG 901 GGAAUCU-GG G-CG(GACCA C)CGGCCU-A AGGCUAA--- -Guacuc-cg ggUGACCGAU 961 AGCG-CAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G AACCCC(gg- ga-)GGG-A- 1021 -GUGAAA-UA GAGCCUGAAA CCGU-GGGCU UACAA-G-CA GUCACGGCCC --C------- 1081 --------(- ---gcaa--) ---------- -----G-GGG UUGUGGCGUG CCU(AUU-GA 1141 AG|C)AUGA| -GCCGGCGAC UCAC-GGUC- GUGGGC-GAG CUUAAgcc-( -guuga)-gg 1201 c-GGAGGCGU AGG(GAAA-) CCGAGUCC(G AA-CA)GGGC Gcaagcgggc cg(--cacg- 1261 ----)cggcc cgc---a-aa G-UCCGCGGC CGUG-GACCC GAAAC-CGG- GCGA-GCUAG 1321 CCCUGGC|CA GGGUGAAGCU GGGG(UGAG) AC-CCAGUGG AGGCCCGAAC C-GGUGGGG( 1381 -GAUGCAAA) CCCCU|CGG- AUGAG-CUGG GGCUAGGAGU (-GAAAA)GC UAACCGAGCC 1441 CGGAGAUAGC UGGUUCUCCC CGAAAUGACU (-UUAG)GGU CAGC|-CUCA GGCGC---u| 1501 -gac|UGGGG C|CUGUAG|A GC-ACUGA-U AGGGCUA-GG |-GGGCC(ca cc-)aGCCUA 1561 CCAAACCCUG -UCAAACUCC GAA-GG-|GU C-c-c-a--g gug----ga| GCC-UGGGAG 1621 UGAGGG--CG C-GAGC(GAU AAC)GUCCGC -GUCCGAGCG CGG(-GAACA A-)CCGAGAC 1681 CGCCAGCUAA G-GC|CCCC- AAGUC-UGGG -C-UAA-GUG ------GUAA AGGAUGUG-G 1741 CGCCGCGAA- GACAGCCAGG AGGUUGGC(U UAGAAGCA)G CCAU-CCU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CGA GU-GGC-GC- -CGC|GCCGA AAAU-GAUG- 1861 CGGGGCUUAA GCCCA-G|C| GCCGAAGCU| GCGG|gucug ggg----(ga uga------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -ccccaggc- GG-UAGGGGA G|-----CGU 2221 U-CCC-GAU- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCGA-U 2341 GAAGGCC-G- ACCC(-GCGA -)GG---CGG CUGG|AGGUA A-GGGAAGUG CGAAUGC-CG 2401 GC|AUG-AGU A--ACGAUAA AGAGGG(UGA GAAU)CCCUC U|CGCC-GUA AGCCCAAGGG 2461 UUCCUA-CGC AAUG-(GUCG U)CA|G-CGU AGGGUUAGG| CGG|G-ACCU AAGGUGAAGC 2521 C(GAAA)-G- GCGU-AGCCG AAGG-GCAGC CGG-(UU-AA UAUU)C-CGG C|CC|uu-c- 2581 cc-gca-ggu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga u------ggg g--gga-cgc ucuaggcua- gggg-g-|ac c-gga(gc-c 2761 auggac-gag --)cc-cggc c|agaa---- ---------- ---gcgc--a -ggg------ 2821 --uggga-gg uagg(ca-aa -u-)cc|g-- ccucccaaca ---------a gcuc--u-gc 2881 gug-gugg|g ga-|------ ------agcc c(-guac--) gggug----- -----acaac 2941 --ccccc-ga agcc-agg-| gagccaagaa a-agccuc-u aagcaca--- ------ac-c 3001 -ugcgg--ga a|c|CCGUAC CGCAAACC(G ACACA)GG|U GG-GCGGGU- GC(AAGAG)C 3061 ACUCAGGCGC ||GCGGGAGA ACCCUCGCC- ---------- ----AAGGAA CUCUGCAAGU 3121 UGGCCCCGUA AC(-UUCG)G GAGAAGGGGU |GCUCCC--- ---------- -----ugggg 3181 u(-gauga)g ccccg----- ---------- --GGGAG-C| C(GCA)GUGA ACAGGCU-CU 3241 GG|CGACU-- ---GU(UUAC CAAAA)ACAC AGCUCUCUG| CGAACUC(GU AA------)G 3301 AGGAGGU-AU AGGGAGCGA- CGCUUGCCCG GU|GCCG-GA A-GGUCAAGG GGAGGG---- 3361 GU-------- (G-CAA)--- --------GC ------CCCG AACCGAAGCC |CCGGUGAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AAAGCGUAAC GA-CCGGAGC GCUGUCUCGG CGAGGGACCC 3541 G|GUGAAAUU |GAACUGG-C CG(UGAAGAU G)CGGCCUAC CCGUGGC-AG GACGAAAAGA 3601 CCCCGUGG|A GCU-UUACUG C|AGCCUGGU GUU|GGCUCU UGGUCGCGCC UGCGUAGGAU 3661 AGGUGGGAGC CUGUGAAC-- CCCCGCC(UC CG)GGUGGGG GGGAGGCGCC -G-GUGAAAU 3721 ACCACC|CUG G-CGCGGCUG GGG-GCCUAA -CCC-UC--- -----(---g -gau)----- 3781 GGGGG-GACA GCGCUUGGCG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAGG 3841 UAAC)GGAGG C|G|C|CCAA AGGUCCCC|U CAGGCGGG(A CGGAAA)UCC GCCGGA-GA| 3901 GC(G|CAAGG )GUAGAAGGG GGCCUGACUG CGAGGC(CUG CAA)GCCGAG CAGGGGC(GA 3961 AA)GC-CGGG |CCUAGUGAA CCGGUGGUCC CG(UGUGGA) AGG|GCCAUC GAUCAAC|GG 4021 AUAAAAGUUA CCC|CGGG|G AUAACAG|GC UGA--UCUCC CCCGAGC(G- UCC-ACA)GC 4081 GGCGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GAAG 4141 A---A)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGCAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CUCUAU -CC|GCCACG G-G|CG-CAG 4261 GAGGCUU|GA -|GGGGGGC- UCU------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAAGGG|ACG CACCUCUGGU UUCCCAGC|U GUCCC(UC-C A-)GGGGCAU AAGCUGGGUA 4381 GCC-AUGUGC GGAAGGGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAGCC CGCCCC|AAG 4441 AUGAGGCCUC C|CA|CGGC- -(-gucaa)- -GCCG--GU- aagG|-AC|C CGGG-(AAGA 4501 CC-A)CCCGG -UGGAUGG|G CCGG|GGGUG -UAAGCGCC- -(GCGA-)-- GGCGU|UG-A 4561 GCCG|A|CCG GUCCCAAUC- GUCCGA-GG| UCUUGA-CCc cuc-----|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS FLE-CYT-BA 4759 bp RNA RNA 17-JAN-1993 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 4759 others ORIGIN 1 -x~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~-)~|- ~~~~~~~~~~ 181 ~~~~~~|-~~ ~~~(~-~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~--- ---------- ---------- 301 -----~~~~~ ~~~~~~~~~~ ~~~~~~---- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- -----~-~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~|~ ~~-~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---- 721 ---~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~-~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~-- -~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ -~~~-~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| -~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 -~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 -~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~-~ ~~~~~~~~~~ |-~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~-~~~~| ~~~~~~~~~~ 1621 ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~-~~~~~ ~-~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~-~~~ ~----~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~-~- -~~-|~~~~~ ~~~~-~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~|-----~~~ 2221 ~-~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~- ~-~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 2401 ~~|~~~~-~~ ~-~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~-~~ ~~~~~~-~~~ ~~~~|~~~~- 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~------~~~ ~~--~~-~~~ ~~~~~~~~~- ~~~~-~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ---------- --~~~~~~~~ ~~~~~~~~-- 2821 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~----~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 --~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~-~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~- ---~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~---~~~~~ 3301 ~~~~~~~~-~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~-~~ ~-~~-~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~( ~~~)~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ 3721 ~~~~~~|~~~ ~~~-~~~~~~ ~~~~~-~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~-~~-~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~|~|~|~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~---~ ~~~~~~-~~~ 3901 ~|~~(~|~~~ ~~)~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~-~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~~~|~~~~ ~~~~~~~~~| 4021 ~~~~~~~~~~ ~~~~~|~~~~ |~~~~~~-~| ~~~~~--~~~ ~~~~~~~~~( ~~~~~~~~~) 4081 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~|~~~~|~~~ ~~~~~~~~~| ~~~~~(~~~~ 4141 ~~~~~--)-~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ -~~~~~~|~~ ~~~~~~~|~~ 4261 ~~~~~~~~~~ -|~-|~~~~~ -~~~~~~--- ---------- -~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4381 ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 |~~~~~~~~~ ~~~~~|~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~|~~~~~-~ 4501 ~~~~~~-~~~ ~~~~~~~~~~ ~~|~~~~~|~ ~~~~~-~~~~ ~~~~~~~~~~ ~--~~~~~~| 4561 ~~~~|~~~-~ |~~~~~~~~~ ~~~~~~~~-- ~~~|~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~||||| // LOCUS M.odoratus 4759 bp RNA RNA 11-JAN-191 DEFINITION Myroides odoratus. str. was Flavobacterium odoratum. ACCESSION No information KEYWORDS No information. SOURCE Myroides odoratus. str. was Flavobacterium odoratum. ORGANISM Myroides odoratus. REFERENCE 1 (bases 1 to 2992) AUTHORS Woese,C.R., Mandelco,L., Yang,D., Gherna,R. and Madigan,M.T. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: M32365 M62807 BASE COUNT 766 a 534 c 763 g 605 t 2091 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- ---------- ---------- ---NNNNNCG UAUGGGGAAU 121 G|CCUAGG|C UCUCAG|AG| GC-GAAGAAG GA|CGUG(AU AA-GC-)U|- GCG-AAAAGC 181 UACGGG|-NN UUG(G-CA-C ACA-)CGAGU UG-AUC-CGU AGAUA|UCCG AAUGGG(GCA 241 A)CCC|ACUA UGU-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---ugaag)- ACAUAGU-AU CC-------( 481 ---gaaua-- --)------- -G-G--AGG- C-GAAC|CU- GCUGAACU|G A(AACA)UCU 541 AAGUA-GGCA GAGGAGAAGA AAAC(-AAAA --)GUGAU|U CC-GCUAGUA GU(GGCGA)G 601 CGA-ACG-CG NN-AUA-GCC CAAAccaaug -uugu----- -----(uacg -)-------- 661 --gcaauauu ggnguuguag gaccac---- ---------- ---------- ---------- 721 ---------- gauauuucuu gcggauugaa uuaGAAu-ua c-c(u-ggaa a)g-gunaAC 781 |c(aaa)gaG GG(UGAUAGU )CCCGU-Aua a-guaagaga agauaaggau a--------- 841 ---------- -----guggu auccu---GA GUAGGUCGGG G(CACGUG-A AA)CCCUNAU 901 UGAAACU-GG C-GG(GACCA U)CC-GCU-A AGGCUAA--- -AUACUCCUG AGAGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G AACCGU(GAA UA-)ACGGA- 1021 -GUGAAA-UA GAUCCUGAAA CCAU-ACGCN NNCAA-G-CG GUCGGAGCcc --c------- 1081 --------(- --uuugu--) ---------- -----g-ggG NNACGGCGUG CCU(NUU-GC 1141 AU|A)AUGA| -GCCUACGAG UUAC-CGUU- GCUGGC-GAG GAUAAGUga( -uuaag)ucA 1201 U-ggAUCCGU AGC(GAAA-) GCGAGUCU(U AA-UA)GGGC Gc-------- ---------- 1261 ---------- -----uu-ua G-UCAGUAGU GGUA-GACGC GAAAC-CGU- GUGA-UCUAC 1321 CCAUGGG|CA GGUUGAAGUU UAGG(UAAC) AC-UAAAUGG AGGACCGAAC C-GUUUAAC( 1381 -GCUGAAAA) GUUUU|CGG- AUGAC-CUGU GGGUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 CGGAAAUAGC UCGUACUCCC CGAAAUGCAU (-UUAG)GUG CAGC|-GAUG AUCau---a| 1501 -guu|acuua g|AGGUAG|A GCuACUGA-U UGGAUGC-GG |-GGGGC(uu cac)CGCCUA 1561 CCAAUUCCUG -ACAAACUCC GAA-UG-|cu n-a-u-u--- aaug---au| aAU-CAUCAG 1621 UGAGGG--CA U-GGGU(GCU AAG)GUCCAU -GUCC-GAGA GGG(-AAAGA A-)CCCAGAC 1681 CAUCAGCUAA G-GU|CCCN- AAAUG-UAUG -C-UAA-GUu ----gaaaAA ACGCGGUU-U 1741 GAUUGCCCA- GACAGCUAGG AUGUUGGC(U UGGAAGCA)G CCAUUCAU|U (UAA)A|GAG 1801 UGC(GUAACA )GC|UCACUA GU-----CGA GC-GAU-CG- -AGC|AUGGa uaau-aauc- 1861 -gggcau-AA GUAUA-C|U| ACCGAAGCU| AUGG|auuua cgcu---(uu a--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ancnunagu- GG-UAGGGGA G|-----CAU 2221 U-CUA-UC-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-ACGU-A 2341 GAAGCCG-U- A-UU(-GCGA -)GAU--AUG GUNG|AGUUU A-UAGAAAAG AAAAUGU-AG 2401 GC|AUA-AGU A--ACGAUAA GGGGUG(CGA GAAA)CACCC N|NGCC-GUA AGACUAAGGU 2461 UUCCUN-AGC UAUG-(CUAA U)CA|G-CUU AGGGUUAGU| CGG|G-ACCC AAGGCAGACn 2521 C(GAAG)-G- GGGA-CGUCG AUGG-CCAAC GGG-(NN-AA UAUU)C-CCG U|AC|ua-c- 2581 ua-aua-auu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------guga u------gga g--uga-cac agugaugaa- agca-c-|cg c-gaa(cu-g 2761 acggaauag- --)uu-cguu -|gaa----- ---------- ---gcac-gu accua----- 2821 uauuucc-ua uagu(aa-aa -u-)gc|g-- uaggaga--- ---------- ugga-gaaau 2881 gcg-auag|- ua-|------ --cucagcgu u(-uucg--) aacancnag- ------au-- 2941 --agugu-gc cuaa-ggg-| cugucaagaa a-agcuuc-u aaacuua--- ------ga-u 3001 -uauua--gu a|c|CCGUAC CGUAAACC(G ACACA)GG|U AG-UCGAGG- A-(GAGUA)U 3061 CCUAAGGCGC ||UCGAGAGA UUCAUGGCU- ---------- ----AAGGAA CUAGGCAAAA 3121 UAGACCUGUA AC(-UUCG)G GAGAAAGGUC |cCGA----- ---------- ---------- 3181 g(-cgcaa)c ---------- ---------- ----UNG-C| C(GCA)GUGA AAAGGUC-CA 3241 GG|CGACU-- ---GU(UUAU CAAAA)ACAC AGGGCUCUG| CAAAAUC(GU AA------)G 3301 AUGAAGU-AU AGGGCCUGA- CACCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGAUGUUA 3361 UC-------- (U-UCG)--- --------GA GA-AGCAUUG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AANNNUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGUGUAAC GA-UCUGGAC ACUGUCUCAG CCAUGAGCUC 3541 G|GUGAAAUU |GUAGUAU-C GG(UGAAGAU G)CCGAUUAC CCGCAGU-GG GACGAAAAGA 3601 CCCUGUGC|A CCU-UUACUA U|AGCUUAGU AUU|GUUCUU GGAUAAGUGA UGUGUAGGAU 3661 AGGUGGGAGA CUUCGAUC-- CUGCGUC(GC CA)GGCGUAG GUUAGUCAUU -G-UUGAAAU 3721 ACCACC|CUN U-GCUUAUUU GAN-AUCUAA -CUC-UG--- -C---(--au -u--)----G 3781 CAGAG-GACA UUGCUUGGUG GG-UAGUUUG ACUG(GGG)U NGUC|GCCUC C(AAA-AGAG 3841 UAAC)GGAGG C|U|U|CUAA AGGUUCCC|U CAGCACGC(U UGGUAA)CCG UGCGUA-GA| 3901 GU(G|CAAUG )GCAUAAGGG AGCUUGACUG GGAGAC(UAA CAA)GUCGAU CAGGUAC(GA 3961 AA)GU-AGAG |CAUAGUGAU CCGGUNGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAA|GG 4021 AUAAAAGGUA CGC|CNNN|G AUAACAG|GC UGA--UCUCC CCCAAGA(G- CUC-AUA)UC 4081 GACGGGG-NN GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC AC|AUCC|UG GGGCU(GGAG 4141 A---A)-GGU CCCAAGGGU| UGNNN(NNUU C)GC-CCAUU AAAGUGGCAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CUCUAU -CU|ACUGUG G-G|CG-UUA 4261 GAAAUUU|GA -|GUGGAUC- UNA------- -------UUC (UAGUAC(GA GA)GGACC)G 4321 AAUUGG|ACC AACCUCUAGU GCAUCUGU|U GUCUC(GC-C A-)GGGGCA- UCGCAGAGUA 4381 GCU-ACGUUG GGCAGGGANN NNNNNN(nnn nnnnnnnn)n nnnnnnnnnn nnnnnn|nnn 4441 nnnnnnnnnn n|nn|----- -(------)- -------nn- nnnn|--n|n nnnn-(nnnn 4501 nn-n)nnnnn -nnnnnnn|n nnnn|nnnnn -nnnnnnnn- -(nnnn-)-- nnnnn|nn-n 4561 nnnn|n|nnn nnnnnnnnn- nnnnnnnnn| nnnnnn-nnn nnn-----|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS F.flexilis 4759 bp RNA RNA 11-JAN-191 DEFINITION Flexibacter flexilis. ACCESSION No information KEYWORDS No information. SOURCE Flexibacter flexilis. ORGANISM Flexibacter flexilis. REFERENCE 1 (bases 1 to 2992) AUTHORS Woese,C.R., Mandelco,L., Yang,D., Gherna,R. and Madigan,M.T. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: M31906 M62806 BASE COUNT 795 a 563 c 838 g 592 t 1971 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- ---------- ------NAC- --GAAGGGCG CAUGGGGGAU 121 G|CCUAGG|C UCUCAG|AG| GC-GAAGAAG GA|CGUG(AU AA-GC-)U|- GCG-AAAAGC 181 UGCGGG|-GA UUG(G-CA-C AUA-)CGAAU UG-AUC-CGC AGAUG|UCCG AAUGGG(GCA 241 A)CCC|ACUA UGU-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---ugaag)- ACAUAGU-AU CC-U-----( 481 ---GUAA--- --)------A -G-G--AGG- C-AAAC|CC- GCUGAACU|G A(AACA)UCU 541 AAGUA-GGCG GAGGAGAAGA AAAC(-AAAA --)GUGAU|U UC-CUAAGUA GU(GGCGA)G 601 CGA-ACG-GG AA-UUA-GCC CAAAccgaag -uugu----- -----(uacg -)-------- 661 --gcaaauuc ggnguuguag gacuggaa-- ---------- ---------- ---------- 721 ---------- -uaauaaauu aaaacaga-a uaaGAAu-gc g-u(u-ggga a)g-cgcaAC 781 |c(gua)gaG GG(UGAUAGU )CCCGU-Auu g-gu-aaugu uuuauuuuag ---------- 841 ---------- ----uucagu auccu---GA GUAAGGCGGG G(UCGGAG-A CG)CCCUGUC 901 UNAAUCC-AC C-GG(CACCA U)CC-GGU-N AGGCUAA--- -AUACUACUG AGAGACCGAU 961 AGUG-AAC-A AGUACU(GUG A)-AGGA-AA GGUGAAAA-G UACCUC(GAA UA-)GAGGG- 1021 -GUGAAA--A GAACCUGAAA CCAU-GCGCN UACAA-G-CG GUCGGAGCCA --CG------ 1081 --------(- ----uga--) ---------- ----UG-UGG UGACGGCGUG CCU(UUU-GC 1141 AU|A)AUGA| -GCCUACGAG UUACGUCUC- AUCGGC-AAG GUUAAGGac( -cuaag)guC 1201 U-GGAGCCGG AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC GU-------- ---------- 1261 ---------- ------u-aa G-UCGGUGGG AGUA-GACGC GAAAC-CUU- GUGA-UCUAC 1321 CCUUGGG|CA GGUUGAAGGU UGGG(UAAA) AC-CAACUGG AGGACCGAAC U-GAUAAGC( 1381 -GUUGAAAA) GCUUC|CGG- AUGAC-CUGA GGCUAGGGGU (-GAAAG)GC UNAUCAAACU 1441 GGGAAAUAGC UCGUACUCAU CGAAAUGUCU (-UUAG)GGA CAGC|-CUCG AGguag--a| 1501 -gug|ucaAG G|AGGUAG|A GCuACCGA-U AGGACUA-GG |-GGGNC(uu cac)CGCCUA 1561 CCAAAUCCUN -ACGAACUCC GAA-UG-|CC Uau-g-a--- cau----au| aCU-CGGGAG 1621 UGAGGG--CA U-GGGU(GCU AAG)GUCCAU -GUCC-GAGA GGG(-AAAGA A-)CCCUNAC 1681 CGUCAGCUAA G-GU|CCCC- AAAUC-UAUU -C-UAA-GUu ----gaacAA AGGUGGUGnC 1741 AGUUGCAGA- GACAGCCAGG AUGUUGGC(U UGGAAGCA)G CCAUUCAU|U (UAA)A|GAG 1801 UGC(GUAACA )GC|UCACUG GU-----CGA GC-GAC-AG- CNGC|AUCga uaau-aaac- 1861 -gggcaucaA GAAUA-G|U| ACCGAAGCU| ACGG|acua- -------(gu aa-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -----uagu- GG-UAGAUGA G|-----CAU 2221 U-CUG-AC-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --A-UCAA-U 2341 GAAGCUG-C- A-UG(-GUCA -)UGU--GUG GUGG|AGAGG U-CAGAAAAG CAAAUGU-AG 2401 GC|AUA-AGU A--ACGAUAA UGCGUG(UGA GAAA)CAUGC A|CGCC-GAU AGACUAAGGU 2461 UUCCUGUAUC AACG-(UUAA U)CG|G-AUC AGGGUUAGU| CGG|G-GCCU NAGGUAUAGG 2521 C(GAAG)-G- CCNA-AGCCG AUGG-ACAAC GGG-(UU-AA UAUU)C-CCG U|AC|ua-a- 2581 au-aau-uga ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga a------gug g--aga-cgg agugaugaa- aggu-u-|cg c-gga(cu-g 2761 auggaauag- --)uu-cguu -|gaa----- ---------- ---gacc-gu aacua----- 2821 uauuggg-ug uagg(ca-aa -u-)cc|g-- caucuga--- ---------- uggu-gaaag 2881 ucg-auag|- ua-|------ --ugcaaagc c(-uucg--) ggcagcgca- ------au-- 2941 --aguga-cc cuaa-ggg-| cuuccaagaa a-aacugc-u aagcaua--- ------uu-g 3001 -auugu--uu a|c|CCGUAC CGCAAACC(G ACACA)GG|U AG-UCAAGG- A-(GAGAA)U 3061 CCUGAGGCGC ||UCGAAUGA AUCACGGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UAACCCUGUA AC(-UUCG)G GAGAAGGGGA |GCCUa---- ---------- -------ccc 3181 a(-gcga-)u ggg------- ---------- ----AGG-U| C(GCA)GAGA AAUGGCC-CA 3241 GG|CGACU-- ---GU(UUAC CAAAA)ACAC AUGGCUUUG| CGAAAAC(GA GA------)G 3301 UUGAAGU-AU AAGGCCUGA- CACCUGCCCG GU|GCUG-GA A-GGUUAAGA GGGGAUGUUA 3361 GUc------- (G-CAA)--- -g------GC GA-AGCAUUG AAUCGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGUGUAAC GA-UCUGGGC GCUGUCUCAA CCGUGAGUUC 3541 G|GUGAAAUU |GUAGUAG-C GG(UGAAGAU G)CCGCNUAC CCGCAAC-GG GACGGAAAGA 3601 CCCCGUGC|A CCU-UUACUA U|AGCUUUAC AUU|GACUUC GGAUAACAGA UGUGUAGGAU 3661 AGGUGGGAGG CUGUGAAA-- UAGUGUC(GC UA)GGCAUUA UGGAGCCAAC -G-UUGAAAU 3721 ACCACC|CUU A-UGUUAUUU GGA-GCCUAA -Ugc-c---- -----(-cag -agc)----- 3781 -gg-A-GACA UUGUAUGGUG GG-UNGUUUG ACUG(NNG)N NGUC|GCCUC C(AAA-AAAG 3841 UAUC)GGAGG C|N|U|UCAA AGGUACCC|U CAGCACGC(U UGGUAA)CCG UGCGCA-GA| 3901 GU(G|CAAUG )GCAUAAGGG NCCUUGACUG UGAGAC(CGA CAA)GUCGAG CAGGUAC(GA 3961 AA)GU-AGGA |CAUAGUGAU CCGGUNGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAA|GG 4021 AUAAAAGGUA CGN|NNNN|N AUAACAG|GC UGA--UCUCC CCCAAGA(G- CUC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC AC|AUCC|UG GGGCU(GGAG 4141 A---A)-GGU CCCAAGGGU| UGGNC(UNUU C)GC-CGAUU AAAGUGGCAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GUUGCG G-G|CG-UAG 4261 GAAUUUU|GA -|GGGGGGC- UGA------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGUUGG|ACG UACCGCUGGU GUAUCGGU|U GUAUU(GC-C C-)AGUGCA- UUGCCGAGUA 4381 GCU-AAGUGC GGAAGAGAUA AGUGCU(GAA AGCAUCUA)A GUACGAAACU CGCCCC|AAG 4441 AUGAGAAUUC C|cu|----- -(------)- -------ua- aagg|--U|C GUUG-(GAGA 4501 UG-A)CAACG -UUGAUAG|G UUGC|AGGUG -Unnnnnnn- -(nnnn-)-- nnnnn|nn-n 4561 nnnn|n|nnn nnnnnnnnn- nnnnnnnnn| nnnnnn-nnn --------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS GREENSULFU 4759 bp RNA RNA 17-JAN-1993 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 4759 others ORIGIN 1 -x~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~-)~|- ~~~~~~~~~~ 181 ~~~~~~|-~~ ~~~(~-~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~--- ---------- ---------- 301 -----~~~~~ ~~~~~~~~~~ ~~~~~~---- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- -----~-~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~|~ ~~-~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---- 721 ---~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~-~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~-- -~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ -~~~-~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| -~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 -~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 -~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~-~ ~~~~~~~~~~ |-~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~-~~~~| ~~~~~~~~~~ 1621 ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~-~~~~~ ~-~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~-~~~ ~----~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~-~- -~~-|~~~~~ ~~~~-~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~|-----~~~ 2221 ~-~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~- ~-~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 2401 ~~|~~~~-~~ ~-~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~-~~ ~~~~~~-~~~ ~~~~|~~~~- 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~------~~~ ~~--~~-~~~ ~~~~~~~~~- ~~~~-~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ---------- --~~~~~~~~ ~~~~~~~~-- 2821 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~----~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 --~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~-~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~- ---~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~---~~~~~ 3301 ~~~~~~~~-~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~-~~ ~-~~-~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~( ~~~)~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ 3721 ~~~~~~|~~~ ~~~-~~~~~~ ~~~~~-~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~-~~-~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~|~|~|~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~---~ ~~~~~~-~~~ 3901 ~|~~(~|~~~ ~~)~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~-~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~~~|~~~~ ~~~~~~~~~| 4021 ~~~~~~~~~~ ~~~~~|~~~~ |~~~~~~-~| ~~~~~--~~~ ~~~~~~~~~( ~~~~~~~~~) 4081 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~|~~~~|~~~ ~~~~~~~~~| ~~~~~(~~~~ 4141 ~~~~~--)-~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ -~~~~~~|~~ ~~~~~~~|~~ 4261 ~~~~~~~~~~ -|~-|~~~~~ -~~~~~~--- ---------- -~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4381 ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 |~~~~~~~~~ ~~~~~|~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~|~~~~~-~ 4501 ~~~~~~-~~~ ~~~~~~~~~~ ~~|~~~~~|~ ~~~~~-~~~~ ~~~~~~~~~~ ~--~~~~~~| 4561 ~~~~|~~~-~ |~~~~~~~~~ ~~~~~~~~-- ~~~|~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~||||| // LOCUS C.limicola 4759 bp RNA RNA 11-JAN-191 DEFINITION Chlorobium limicola. ACCESSION No information KEYWORDS No information. SOURCE Chlorobium limicola. ORGANISM Chlorobium limicola. REFERENCE 1 (bases 1 to 2992) AUTHORS Woese,C.R., Mandelco,L., Yang,D., Gherna,R. and Madigan,M.T. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: M31904 M62805 BASE COUNT 744 a 583 c 818 g 572 t 2042 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGUUAC- --UAAGGGCG UACGGUGGAU 121 G|CCUUGG|C ACAAGA|AG| GC-GACGAAG GA|CGUG(GU UUAAC-)U|- GCG-AAAAGC 181 UGCGGG|-GA GGC(G-UA-A ACA-)GCCUN AU-AUC-CGC AGAUC|UCCG AAUGGG(GCA 241 A)CCC|ACCU C---(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----guaa)- --GAGGU-AU UC-C-----( 481 ---GUAA--- --)------G -G-A--AGG- C-AAAC|CC- GGGGAAGU|G A(AACA)UCU 541 CAGUA-CCUG GAGGAAAAGA AAAC(-AAAA --)GUGAU|U UC-CUGAGUA GC(GGCGA)G 601 CGA-AAA-GG AA-CAA-GCC CAAAccgaug ucugu----- -----(uucg -)-------- 661 --gcagcguc gggguuguag gacucc---- ---------- ---------- ---------- 721 ---------a uaacgugaca gcgaucgaua gcaGAAc-ua c-c(u-ggaa a)g-guaggc 781 |c(aga)gaA GG(UGAAAGC )CCUGU-Agg c-gaaaucgu gaacugcaca gg-------- 841 ---------- -------agg auccu---GA GUAGCACGGG G(UACGUG-A GG)UCCUGUG 901 UGAACCA-GC G-AG(AACCA U)CU-CGU-A AGGCUAA--- -AUACUCUCU UGUGACCGAU 961 AGUG-AAC-C AGUACC(GUA A)-GGGA-AA GGUGAAAA-G UACCCU(UAA GA-)AGGGA- 1021 -GUGAAA-UA GUACCUGAAA CCGU-ACGCN NACAAAA-CU GUAGGAGCUa -acc-acc-- 1081 --------(- ---uucg--) ---------- -ggugg-guG UGACUGCGUG CCU(NUU-GC 1141 AU|A)AUGA| -GCCUACGAG UUACUGGUA- UGUUGC-GAG GUUAAGGUU( --UUCA)GAC 1201 C-GGAGCCGC AGC(GAAA-) GCGAGUUC(G AA-CA)GAGC GA-------- ---------- 1261 ---------- --------ga G-UAACAUGC CGUA-GACGC GAAAC-CAA- GUGA-UCUAU 1321 CCUUGAU|CA GGAUGAAGUA UGGG(UAAA) AC-CAUAUGG AGGUCCGAAC C-AGUGUGG( 1381 -GUUGAAAA) CCGCU|UGG- AUGAA-UUGA GGAUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 UGGUNAUAGC UCGUACUCCC CNAAAUGUCU (-UGAG)GGA CAGC|-CUCG GGnncg--A| 1501 -GUC|ugccg g|AGGUAG|A GCUaccaa-U UGGGCUA-gg |-gcugu(ca ca-)acggua 1561 ccaaacccag -augAACUCC GAA-UG-|CC G-g-u-a--U GAC----au| aCC-CGGGAG 1621 UGAGGG--CA U-GAGC(GAU AAG)GUCCAU -GUCC-GAGA GGG(-AAACA A-)CCCAGAA 1681 CCACAGCUAA G-GC|CCCN- NAAUU-CACG -C-UnA-GUg ----uauuAA AGAUUGUU-U 1741 GAUUGCUCA- GACAGCUAGG AUGUUGGC(U UAGAAGCA)G CCAC-CAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUA GU-----CAA GC-GAU-CA- -UGC|GUCGA UAAU-A-CC- 1861 CGGGACU-AA GCGUG-G|U| GCCGAAGCU| UGGU|nauca -------(uu ua-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ----ugauc- GG-UAGGGGA G|-----CAU 2221 U-CCA-GU-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-GCGU-U 2341 GAAGGUG-U- C-UG(-GUAA -)UGG--AUG CUGG|AGCGG C-UGGAAACG AACAUGU-AG 2401 GC|AUG-AGU A--GCGAUAA ACAAAG(UGA GAAA)CUUUG U|CACC-GAA AAUCUAAGGU 2461 UUCCUG-AGC AAUG-(UUAA U)CA|A-CUC AGGGUUAGU| CGG|G-ACCU AAGGUGAGGC 2521 C(GAAA)-G- GCGU-AGCCG AUGG-AAAAC UGG-(UU-AA UAAU)C-CAG U|AC|cc-g- 2581 gu-cau-gaa g--------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 guuauuacua c------ggg g--uga-cgc agaagugaa- aggc-g-|ag c-caa(cu-g 2761 acggacgug- --)gu-gguu -|uaa----- ---------- ---gugc-gu aggc------ 2821 --uggag-ug uagg(ca-aa -u-)cc|g-- cgcuccuuaa ---------- ggcu-gaaac 2881 acg-aaua|g gg-|------ ------ugcu c(-guaa--) gagccgcaa- ------cu-- 2941 ---cgcc-cu aauc-cgg-| cugccgagaa a-agccuc-u augggac--- ------ga-c 3001 -augac--ug g|C|CCGUAC CGUAAACC(G ACACA)GG|U AG-AUGGGA- U-(GAGUA)U 3061 UCUAAGGUGC ||UCGAGUGA GACGCAGCU- ---------- ----AAGGAA CUCGGCAAAA 3121 UAGCCCCGUA AC(-UUCG)G GAGAAGGGGu |-GCCU---- ---------- ---------a 3181 g(-auuu-)c u--------- ---------- ----AGG-C| C(GCA)GUGA AAUGGGU-CA 3241 AG|CGACU-- ---GU(UUAA CAAAA)ACAC AUCUCUCUG| CCAAGAC(GA UU---UAA)G 3301 UCGAUGU-AU AGGGAGUGA- CACCUGCCCG GU|GCUG-GA A-GGUUAAGG GGAUCUGUcA 3361 UC-------- (G-CAA)--- --------GA GA-aGCAGug aACCNAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGUGUAAC GA-UUUGACC ACUGUCUCGG CUGCGCGCUC 3541 G|GCGAAAUU |GUAGUGC-C GG(UGAAGAU G)CCGNNNAC UCGCAUC-UG GACGGAAAGA 3601 CCCUAUGC|A CCU-UUACUA U|AACCUGGC AUU|GGGCUU GAGCAUGAUU UGUGUAGAAU 3661 AGGUGGGAGA CUUUGAAG-- CGGGAGC(GU CA)GCUUCCG UGGAGUCGCA aU-GUGAAAU 3721 ACCACC|CUG G-UUGUGUUU GAG-UCCUAA -CUUCGG--- -CGAG(-uun -AUC)-CUCG 3781 CUAAG-GACC AUGUCAGGCG GG-UAGUUUG ACUG(GNN)N NGUC|GCCUC C(UAA-AAAG 3841 UAAC)GGAGG C|U|U|ACAA AGGUUCAC|U CAGUUCCG(U CGGUAA)UGG AACGUA-GA| 3901 GC(A|UAAUG )GUACAAGUG AGCUUGACUG UGAGAC(CGA CAG)GUCGAG CAGGAAC(GA 3961 AA)GU-UGGU |CAUAGUGAU CCGGUGGUCC CG(CAUGGA) AGG|GCCAUC GCUCAUA|GG 4021 AUAAAAGGUA CGC|UAGG|G AUAACAG|GC UGA--UCCCC GCCGAGA(G- UUC-AUA)UC 4081 GACGUGG-GN NU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GGAG 4141 A---A)-GGU CCCAAGGGU| CCGGC(UNUU C)GC-CGGUU AAAGUGGUAC G-UGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GAUGCG A-G|CG-CAG 4261 GAAAUUU|GA -|GAGGGCU- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGACGA|ACA AACCUCUGGU GCACCAGU|U GUCAC(GC-C A-)GUGGCA- UGGCUGGGUA 4381 GCU-AUGUUU GGUNNnnnnn nnnnnn(nnn nnnnnnnn)n nnnnnnnnnn nnnnnn|nnn 4441 nnnnnnnnnn n|nn|----- -(------)- --------n- nnnn|-nn|n nnnn-(nnnn 4501 nn-n)nnnnn -nnnnnnn|n nnnn|nnnnn -nnnnnnnnn n(nnnn-)-- nnnnn|nn-n 4561 nnnn|n|nnn nnnnnnnnn- nnnnnnnnn| nnnnnn-nnn n-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS PLANCTOMYC 4759 bp RNA RNA 17-JAN-1993 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 4759 others ORIGIN 1 -x~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~-)~|- ~~~~~~~~~~ 181 ~~~~~~|-~~ ~~~(~-~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~--- ---------- ---------- 301 -----~~~~~ ~~~~~~~~~~ ~~~~~~---- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- -----~-~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~|~ ~~-~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---- 721 ---~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~-~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~-- -~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ -~~~-~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| -~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 -~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 -~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~-~ ~~~~~~~~~~ |-~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~-~~~~| ~~~~~~~~~~ 1621 ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~-~~~~~ ~-~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~-~~~ ~----~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~-~- -~~-|~~~~~ ~~~~-~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~|-----~~~ 2221 ~-~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~- ~-~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 2401 ~~|~~~~-~~ ~-~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~-~~ ~~~~~~-~~~ ~~~~|~~~~- 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~------~~~ ~~--~~-~~~ ~~~~~~~~~- ~~~~-~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ---------- --~~~~~~~~ ~~~~~~~~-- 2821 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~----~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 --~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~-~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~- ---~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~---~~~~~ 3301 ~~~~~~~~-~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~-~~ ~-~~-~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~( ~~~)~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ 3721 ~~~~~~|~~~ ~~~-~~~~~~ ~~~~~-~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~-~~-~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~|~|~|~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~---~ ~~~~~~-~~~ 3901 ~|~~(~|~~~ ~~)~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~-~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~~~|~~~~ ~~~~~~~~~| 4021 ~~~~~~~~~~ ~~~~~|~~~~ |~~~~~~-~| ~~~~~--~~~ ~~~~~~~~~( ~~~~~~~~~) 4081 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~|~~~~|~~~ ~~~~~~~~~| ~~~~~(~~~~ 4141 ~~~~~--)-~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ -~~~~~~|~~ ~~~~~~~|~~ 4261 ~~~~~~~~~~ -|~-|~~~~~ -~~~~~~--- ---------- -~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4381 ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 |~~~~~~~~~ ~~~~~|~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~|~~~~~-~ 4501 ~~~~~~-~~~ ~~~~~~~~~~ ~~|~~~~~|~ ~~~~~-~~~~ ~~~~~~~~~~ ~--~~~~~~| 4561 ~~~~|~~~-~ |~~~~~~~~~ ~~~~~~~~-- ~~~|~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~||||| // LOCUS C.pneumo.1 4759 bp RNA RNA 18-SEP-1997 DEFINITION Chlamydia pneumoniae.; . ACCESSION U68421 KEYWORDS . SOURCE Chlamydia pneumoniae. ORGANISM Chlamydia pneumoniae. REFERENCE 1 (bases 1 to 1282) AUTHORS Everett,K.D. and Andersen,A.A. TITLE gene are phylogenetic markers for Chlamydia spp The ribosomal intergenic spacer and domain I of the 23S rRNA JOURNAL Int. J. Syst. Bacteriol. 47 (2), 461-473 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1282) AUTHORS Everett,K.D.E. and Andersen,A.A. TITLE Direct Submission JOURNAL Submitted (29-AUG-1996) USDA-ARS-NADC, 2300 Dayton Avenue, Ames, IA 50010, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U68421 BASE COUNT 269 a 138 c 228 g 205 t 3919 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- ----UACAGA CCAAGUUGU- --UAAGAGCU AUUGGCGGAU 121 G|CCUUGG|C AUUGAC|AG| GC-GAUGAAG GA|UGCG(UU UA-CC-)U|- GCA-GUAAUC 181 UUCGGU|-GA GCU(G-GU-A UAG-)AGCUA UG-ACC-CGG AGGUA|UCCG AAUGGG(GCA 241 A)CCC|gaua gac-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uaaua)- gucuauc-AU UA-UAUGUU( 481 GA-AUACA-- UA)GGC-AUA -U-A--AGG- CGACAC|CC- GCUGAACU|G A(AACA)UCU 541 UAGUA-AGCG GAGGAAAAGA AAUC(-aaa- --)GAGAU|U CC-CUGUGUA GC(GGCGA)G 601 CGA-AAG-GG GA-ACA-GCC UAAAccauau -u-------- -----(-uuu -)-------- 661 -----aauau gggguuguag ggucgauaa- ---------- ---------- ---------- 721 ---------- caugggaucu uaaguuuu-a guuGAAuacu u-c(u-ggaa a)g-uugaac 781 |g(aua)caG GG(UGAUAGU )CCCGU-Aaa c-gaaaaaac aa-aagacg- ---------- 841 ---------- --cuaaucga uaccu---GA GUAGGGCUAG A(CACGUG-A AA)CCUAGUC 901 UGAAUCU-GG G-GA(GACCA C)UC-UCC-A AGGCUAA--- -AUACUAGUC AAUGACCUAU 961 AGUG-AAC-C AGUACU(GUG A)-AGGA-AA GGUGAAAA-G AACCCU(ugu ua-)AGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAG-UAGCU UAUAA-G-CG GUCGGAGACC -uau---aac 1081 -uc-----(- ---uucg--) --------ga -guaau-GGU UGACGGCGUG CCU(UUU-GC 1141 AU|G)AUGA| -GCCAGGGAG UUAA-GUUA- AACGGC-GAG AUUAAGGGA( uuuaca)UUC 1201 C-GGAGUCGA AGC(GAAA-) GCGAGUUU(U AA-AA)GAGC GU-------- ---------- 1261 ---------- ------uuua G-UCGUUUGA UUUA-GACAC GAAAC-CAA- GUGA-GCUAU 1321 UUAUGAC|CA GGUUGAAGCA UUGG(UAAG) AC-UUUGUGG AGGACCGAAC C-AGUACAU( 1381 -GUUGAAAA) AUGUU|UGG- AUGAG-UUGU GAAUAGGGGU (-GAAAG)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |-~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~-~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.pneumo.2 4759 bp RNA RNA 18-SEP-1997 DEFINITION Chlamydia pneumoniae.; . ACCESSION U68422 KEYWORDS . SOURCE Chlamydia pneumoniae. ORGANISM Chlamydia pneumoniae. REFERENCE 1 (bases 1 to 1284) AUTHORS Everett,K.D. and Andersen,A.A. TITLE The ribosomal intergenic spacer and domain I of the 23S rRNA gene are phylogenetic markers for Chlamydia spp JOURNAL Int. J. Syst. Bacteriol. 47 (2), 461-473 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1284) AUTHORS Everett,K.D.E. and Andersen,A.A. TITLE Direct Submission JOURNAL Submitted (29-AUG-1996) USDA-ARS-NADC, 2300 Dayton Avenue, Ames, IA 50010, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U68422 BASE COUNT 269 a 140 c 227 g 204 t 3919 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- ----UACAGA CCAAGUUGU- --UAAGAGCU AUUGGCGGAU 121 G|CCUUGC|C AUUGAC|AG| GC-GAUGAAG GA|UGCG(UU UA-CC-)U|- GCA-GUAAUC 181 UUCGGU|-GA GCU(G-GU-A UAG-)AGCUA UG-ACC-CGG AGGUA|UCCG AAUGGG(GCA 241 A)CCC|gaua gac-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uaaua)- gucuauc-AU UA-UAUGUU( 481 GA-AUACA-- UA)GGC-AUA -U-A--AGG- CGACAC|CC- GCUGAACU|G A(AACA)UCU 541 UAGUA-AGCG GAGGAAAAGA AAUC(-aaa- --)GAGAU|U CC-CUGUGUA GC(GGCGA)G 601 CGA-AAG-GG GA-ACA-GCC UAAAccauau -u-------- -----(-uuu -)-------- 661 -----aauau gggguuguag ggucgacaa- ---------- ---------- ---------- 721 ---------- caugggaucu uaaguuuu-a guuGAAuacu u-c(u-ggaa a)g-uugaac 781 |g(aua)caG GG(UGAUAGU )CCCGU-Aaa c-gaaaaaac aa-aagacg- ---------- 841 ---------- --cuaaucga uaccu---GA GUAGGGCUAG A(CACGUG-A AA)CCUAGUC 901 UGAAUCU-GG G-GA(GACCA C)UC-UCC-A AGGCUAA--- -AUACUAGUC AAUGACCUAU 961 AGUG-AAC-C AGUACU(GUG A)-AGGA-AA GGUGAAAA-G AACCCU(ugu ua-)AGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAG-UAGCU UAUAA-G-CG GUCGGAGACC -uau---aac 1081 -uc-----(- ---uucg--) --------ga -guaau-GGU UGACGGCGUG CCU(UUU-GC 1141 AU|G)AUGA| -GCCAGGGAG UUAA-GUUA- AACGGC-GAG AUUAAGGGA( uuuaca)UUC 1201 C-GGAGUCGA AGC(GAAA-) GCGAGUUU(U AA-AA)GAGC GU-------- ---------- 1261 ---------- ------uuua G-UCGUUUGA UUUA-GACAC GAAAC-CAA- GUGA-GCUAU 1321 UUAUGAC|CA GGUUGAAGCA UUGG(UAAG) AC-UUUGUGG AGGACCGAAC C-AGUACAU( 1381 -GUUGAAAA) AUGUU|UGG- AUGAG-UUGU GAAUAGGGGU (-GAAAG)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |-~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~-~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.pneumo.3 4759 bp RNA RNA 18-SEP-1997 DEFINITION Chlamydia pneumoniae.; . ACCESSION U68423 KEYWORDS . SOURCE Chlamydia pneumoniae. ORGANISM Chlamydia pneumoniae. REFERENCE 1 (bases 1 to 1284) AUTHORS Everett,K.D. and Andersen,A.A. TITLE The ribosomal intergenic spacer and domain I of the 23S rRNA gene are phylogenetic markers for Chlamydia spp JOURNAL Int. J. Syst. Bacteriol. 47 (2), 461-473 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1284) AUTHORS Everett,K.D.E. and Andersen,A.A. TITLE Direct Submission JOURNAL Submitted (29-AUG-1996) USDA-ARS-NADC, 2300 Dayton Avenue, Ames, IA 50010, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U68423 BASE COUNT 267 a 140 c 229 g 204 t 3919 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- ----UACAGA CCAAGUUGU- --UAAGAGCU AUUGGCGGAU 121 G|CCUUGG|C AUUGAC|AG| GC-GAUGAAG GA|UGCG(UU UA-CC-)U|- GCA-GUAAUC 181 UUCGGU|-GA GCU(G-GU-A UAG-)AGCUA UG-ACC-CGG AGGUA|UCCG AAUGGG(GCA 241 A)CCC|gaua gac-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uaaua)- guccauc-AU UA-UAUGUU( 481 GA-AUACA-- UA)GGC-AUA -U-A--AGG- CGACAC|CC- GCUGAACU|G A(AACA)UCU 541 UAGUA-AGCG GAGGAAAAGA AAUC(-aaa- --)GAGAU|U CC-CUGUGUA GC(GGCGA)G 601 CGA-AAG-GG GA-ACA-GCC UAAAccauau -u-------- -----(-uuu -)-------- 661 -----aauau gggguuguag ggucgauaa- ---------- ---------- ---------- 721 ---------- caugggaucu uaaguuuu-a guuGAAuacu u-c(u-ggaa a)g-uugaac 781 |g(aua)caG GG(UGAUAGU )CCCGU-Uaa c-gaaaaaac aa-aagacg- ---------- 841 ---------- --cuaaucga uaccu---GA GUAGGGCUAG A(CACGUG-A AA)CCUAGUC 901 UGAAUCU-GG G-GA(GACCA C)UC-UCC-A AGGCUAA--- -AUACUAGUC AAUGACCUAU 961 AGUG-AAC-C AGUACU(GUG A)-AGGA-AA GGUGAAAA-G AACCCU(ugu ua-)AGGGA- 1021 -GCGAAA-UA GAACCUGAAA CCAG-UAGCU UAUAA-G-CG GUCGGAGACC -uau---aac 1081 -uc-----(- ---uucg--) --------ga -guaau-GGU UGACGGCGUG CCU(UUU-GC 1141 AU|G)AUGA| -GCCAGGGAG UUAA-GUUA- AACGGC-GGG AUUAAGGGA( uuuaca)UUC 1201 C-GGAGUCGA AGC(GAAA-) GCGAGUUU(U AA-AA)GAGC GU-------- ---------- 1261 ---------- ------uuua G-UCGUUUGA UUUA-GACAC GAAAC-CAA- GUGA-GCUAU 1321 UUAUGAC|CA GGUUGAAGCA UUGG(UAAG) AC-UUUGUGG AGGACCGAAC C-AGUACAU( 1381 -GUUGAAAA) AUGUU|UGG- AUGAG-UUGU GAAUAGGGGU (-GAAAG)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |-~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~-~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.pneumo.4 4759 bp RNA RNA 18-SEP-1997 DEFINITION Chlamydia pneumoniae.; . ACCESSION U68424 KEYWORDS . SOURCE Chlamydia pneumoniae. ORGANISM Chlamydia pneumoniae. REFERENCE 1 (bases 1 to 1284) AUTHORS Everett,K.D. and Andersen,A.A. TITLE The ribosomal intergenic spacer and domain I of the 23S rRNA gene are phylogenetic markers for Chlamydia spp JOURNAL Int. J. Syst. Bacteriol. 47 (2), 461-473 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1284) AUTHORS Everett,K.D.E. and Andersen,A.A. TITLE Direct Submission JOURNAL Submitted (29-AUG-1996) USDA-ARS-NADC, 2300 Dayton Avenue, Ames, IA 50010, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U68424 BASE COUNT 269 a 138 c 228 g 205 t 3919 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- ----UACAGA CCAAGUUGU- --UAAGAGCU AUUGGCGGAU 121 G|CCUUGG|C AUUGAC|AG| GC-GAUGAAG GA|UGCG(UU UA-CC-)U|- GCA-GUAAUC 181 UUCGGU|-GA GCU(G-GU-A UAG-)AGCUA UG-ACC-CGG AGGUA|UCCG AAUGGG(GCA 241 A)CCC|gaua gac-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uaaua)- gucuauc-AU UA-UAUGUU( 481 GA-AUACA-- UA)GGC-AUA -U-A--AGG- CGACAC|CC- GCUGAACU|G A(AACA)UCU 541 UAGUA-AGCG GAGGAAAAGA AAUC(-aaa- --)GAGAU|U CC-CUGUGUA GC(GGCGA)G 601 CGA-AAG-GG GA-ACA-GCC UAAAccauau -u-------- -----(-uuu -)-------- 661 -----aauau gggguuguag ggucgauaa- ---------- ---------- ---------- 721 ---------- caugggaucu uaaguuuu-a guuGAAuacu u-c(u-ggaa a)g-uugaac 781 |g(aua)caG GG(UGAUAGU )CCCGU-Aaa c-gaaaaaac aa-aagacg- ---------- 841 ---------- --cuaaucga uaccu---GA GUAGGGCUAG A(CACGUG-A AA)CCUAGUC 901 UGAAUCU-GG G-GA(GACCA C)UC-UCC-A AGGCUAA--- -AUACUAGUC AAUGACCUAU 961 AGUG-AAC-C AGUACU(GUG A)-AGGA-AA GGUGAAAA-G AACCCU(ugu ua-)AGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAG-UAGCU UAUAA-G-CG GUCGGAGACC -uau---aac 1081 -uc-----(- ---uucg--) --------ga -guaau-GGU UGACGGCGUG CCU(UUU-GC 1141 AU|G)AUGA| -GCCAGGGAG UUAA-GUUA- AACGGC-GAG AUUAAGGGA( uuuaca)UUC 1201 C-GGAGUCGA AGC(GAAA-) GCGAGUUU(U AA-AA)GAGC GU-------- ---------- 1261 ---------- ------uuua G-UCGUUUGA UUUA-GACAC GAAAC-CAA- GUGA-GCUAU 1321 UUAUGAC|CA GGUUGAAGCA UUGG(UAAG) AC-UUUGUGG AGGACCGAAC C-AGUACAU( 1381 -GUUGAAAA) AUGUU|UGG- AUGAG-UUGU GAAUAGGGGU (-GAAAG)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |-~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~-~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.pneumo.5 4759 bp RNA RNA 18-SEP-1997 DEFINITION Chlamydia pneumoniae.; . ACCESSION U68425 KEYWORDS . SOURCE Chlamydia pneumoniae. ORGANISM Chlamydia pneumoniae. REFERENCE 1 (bases 1 to 1284) AUTHORS Everett,K.D. and Andersen,A.A. TITLE The ribosomal intergenic spacer and domain I of the 23S rRNA gene are phylogenetic markers for Chlamydia spp JOURNAL Int. J. Syst. Bacteriol. 47 (2), 461-473 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1284) AUTHORS Everett,K.D.E. and Andersen,A.A. TITLE Direct Submission JOURNAL Submitted (29-AUG-1996) USDA-ARS-NADC, 2300 Dayton Avenue, Ames, IA 50010, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U68425 BASE COUNT 269 a 138 c 228 g 205 t 3919 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- ----UACAGA CCAAGUUGU- --UAAGAGCU AUUGGCGGAU 121 G|CCUUGG|C AUUGAC|AG| GC-GAUGAAG GA|UGCG(UU UA-CC-)U|- GCA-GUAAUC 181 UUCGGU|-GA GCU(G-GU-A UAG-)AGCUA UG-ACC-CGG AGGUA|UCCG AAUGGG(GCA 241 A)CCC|gaua gac-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uaaua)- gucuauc-AU UA-UAUGUU( 481 GA-AUACA-- UA)GGC-AUA -U-A--AGG- CGACAC|CC- GCUGAACU|G A(AACA)UCU 541 UAGUA-AGCG GAGGAAAAGA AAUC(-aaa- --)GAGAU|U CC-CUGUGUA GC(GGCGA)G 601 CGA-AAG-GG GA-ACA-GCC UAAAccauau -u-------- -----(-uuu -)-------- 661 -----aauau gggguuguag ggucgauaa- ---------- ---------- ---------- 721 ---------- caugggaucu uaaguuuu-a guuGAAuacu u-c(u-ggaa a)g-uugaac 781 |g(aua)caG GG(UGAUAGU )CCCGU-Aaa c-gaaaaaac aa-aagacg- ---------- 841 ---------- --cuaaucga uaccu---GA GUAGGGCUAG A(CACGUG-A AA)CCUAGUC 901 UGAAUCU-GG G-GA(GACCA C)UC-UCC-A AGGCUAA--- -AUACUAGUC AAUGACCUAU 961 AGUG-AAC-C AGUACU(GUG A)-AGGA-AA GGUGAAAA-G AACCCU(ugu ua-)AGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAG-UAGCU UAUAA-G-CG GUCGGAGACC -uau---aac 1081 -uc-----(- ---uucg--) --------ga -guaau-GGU UGACGGCGUG CCU(UUU-GC 1141 AU|G)AUGA| -GCCAGGGAG UUAA-GUUA- AACGGC-GAG AUUAAGGGA( uuuaca)UUC 1201 C-GGAGUCGA AGC(GAAA-) GCGAGUUU(U AA-AA)GAGC GU-------- ---------- 1261 ---------- ------uuua G-UCGUUUGA UUUA-GACAC GAAAC-CAA- GUGA-GCUAU 1321 UUAUGAC|CA GGUUGAAGCA UUGG(UAAG) AC-UUUGUGG AGGACCGAAC C-AGUACAU( 1381 -GUUGAAAA) AUGUU|UGG- AUGAG-UUGU GAAUAGGGGU (-GAAAG)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |-~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~-~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.pneumo.6 4759 bp RNA RNA 18-SEP-1997 DEFINITION Chlamydia pneumoniae.; . ACCESSION U68426 KEYWORDS . SOURCE Chlamydia pneumoniae. ORGANISM Chlamydia pneumoniae. REFERENCE 1 (bases 1 to 1284) AUTHORS Everett,K.D. and Andersen,A.A. TITLE gene are phylogenetic markers for Chlamydia spp The ribosomal intergenic spacer and domain I of the 23S rRNA JOURNAL Int. J. Syst. Bacteriol. 47 (2), 461-473 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1284) AUTHORS Everett,K.D.E. and Andersen,A.A. TITLE Direct Submission JOURNAL Submitted (29-AUG-1996) USDA-ARS-NADC, 2300 Dayton Avenue, Ames, IA 50010, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U68426 BASE COUNT 270 a 137 c 227 g 206 t 3919 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- ----UACAGA CCAAGUUGU- --UAAGAGCU AUUGGCGGAU 121 G|CCUUGG|C AUUGAC|AG| GC-GAUGAAG GA|UGCG(UU UA-CC-)U|- GCA-GUAAUC 181 UUCGGU|-GA GCU(G-GU-A UAG-)AGCUA UG-ACC-CGG AGGUA|UCCG AAUGGG(GCA 241 A)CCC|gaua gac-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uaaua)- gucuauc-AU UA-UAUGCU( 481 GA-AUACA-- UA)GGC-AUA -U-A--AGG- CGACAC|CC- GUUGAACU|G A(AACA)UCU 541 UAGUA-AGCG GAGGAAAAGA AAUC(-aaa- --)GAGAU|U CC-CUGUGUA GC(GGCGA)G 601 CGA-AAG-GG GA-ACA-GCC UAAAccauau -u-------- -----(-uuu -)-------- 661 -----aauau gggguuguag ggucgauaa- ---------- ---------- ---------- 721 ---------- caugggaucu uaaguuuu-a guuGAAuacu u-c(u-ggaa a)g-uugaac 781 |g(aua)caG GG(UGAUAGU )CCCGU-Aaa c-gaaaaaac aa-aaggca- ---------- 841 ---------- --cuaaucga uaccu---GA GUAGGGCUAG A(CACGUG-A AA)CCUAGUC 901 UGAAUCU-GG G-GA(GACCA C)UC-UCU-A AGGCUAA--- -AUACUAGUC AAUGACCUAU 961 AGUG-AAC-C AGUACU(GUG A)-AGGA-AA GGUGAAAA-G AACCCU(ugu ua-)AGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAG-UAGCU UAUAA-G-CG GUCGGAGACC -uau---aac 1081 -uc-----(- ---uucg--) --------ga -guaau-GGU UGACGGCGUG CCU(UUU-GC 1141 AU|G)AUGA| -GCCAGGGAG UUAA-GUUA- AACGGC-GAG AUUAAGGGA( uuuaca)UUC 1201 C-GGAGUCGA AGC(GAAA-) GCGAGUUU(U AA-AA)GAGC GU-------- ---------- 1261 ---------- ------uuua G-UCGUUUGA UUUA-GACAC GAAAC-CAA- GUGA-GCUAU 1321 UUAUGAC|CA GGUUAAAGCA UUGG(UAAG) AC-UUUGUGG AGGACCGAAC C-AGUACAU( 1381 -GUUGAAAA) AUGUU|UGG- AUGAG-UUGU GAAUAGGGGU (-GAAAG)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |-~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~-~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.trach.01 4759 bp RNA RNA 20-MAY-1998 DEFINITION Chlamydia trachomatis.; . ACCESSION AE0013 5 AE00 273 KEYWORDS . SOURCE Chlamydia trachomatis. ORGANISM Chlamydia trachomatis. REFERENCE 1 (bases 1 to 10050) AUTHORS Aravind,L., Mitchell,W.P., Olinger,L., Tatusov,R.L., Zhao,Q., Koonin,E.V. and Davis,R.W. Stephens,R.S., Kalman,S., Lammel,C.J., Fan,J., Marathe,R., TITLE Humans: Chlamydia trachomatis Genome Sequence of an Obligate Intracellular Pathogen of JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 10050) AUTHORS Stephens,R.S., Kalman,S., Lammel,C.J., Fan,J., Marathe,R., Aravind,L., Mitchell,W.P., Olinger,L., Tatusov,R.L., Zhao, Q., Koonin,E.V. and Davis,R.W. TITLE Direct Submission JOURNAL Submitted (20-MAY-1998) Program in Infectious Diseases, University of California, 235 Warren Hall, Berkeley, CA 94720-7360, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: AE001345 BASE COUNT 935 a 593 c 897 g 661 t 1673 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- ----UACAGA CCAAGUUAA- --UAAGAGCU AUUGGUGGAU 121 G|CCUUGG|C AUUGAC|AG| GC-GAAGAAG GA|CGCG(AA UA-CC-)U|- GCG-AAAAGC 181 UCCGGC|-GA GCU(G-GU-G AUA-)AGCAA AG-ACC-CGG AGGUA|UCCG AAUGGG(GAA 241 A)CCC|ggua gag-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uaaua)- gacuacc-AU UG-CAUGCU( 481 GA-AUACA-- UA)GGU-AUG -C-A--AAG- CGACAC|CU- GCCGAACU|G A(AACA)UCU 541 UAGUA-AGCA GAGGAAAAGA AAUC(-gaa- --)GAGAU|U CC-CUGUGUA GC(GGCGA)G 601 CGA-AAG-GG GA-AUA-GCC UAAAccgagc -u-------- -----(gaua a)-------- 661 -----ggcuc gggguuguag gauugagga- ---------- ---------- ---------- 721 ---------- uaaaggauca ggacuccu-a guuGAAcaca u-c(u-ggaa a)g-auggau 781 |g(aua)caG GG(UGAUAGU )CCCGU-Aga c-gaaaggag agaaagacc- ---------- 841 ---------- -gacc-ucaa caccu---GA GUAGGACUAG A(CACGUG-A AA)CCUAGUC 901 UGAAUCU-GG G-GA(GACCA C)UC-UCC-A AGGCUAA--- -AUACUAGUC AAUGACCGAU 961 AGUG-AAC-C AGUACU(GUG A)-AGGA-AA GGCGAAAA-G AACCCU(ugu ua-)AGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAG-UAGCU UACAA-G-CG GUCGGAGACC -aau----gg 1081 ccc-----(- ---guaa--) --------gg guc-aa-GGU UGACGGCGUG CCU(UUU-GC 1141 AU|G)AUGA| -GCCAGGGAG UUAA-GCUA- AACGGC-GAG GUUAAGGGA( uauaca)UUC 1201 C-GGAGCCGG AGC(GAAA-) GCGAGUUU(U AA-AA)GAGC GA-------- ---------- 1261 ---------- ------a-ga G-UCGUUUGG UUUA-GACAC GAAAC-CAA- GUGA-GCUAU 1321 UUAUGAC|CA GGUUGAAGCA UGGG(UAAA) AC-UAUGUGG AGGACCGAAC U-AGUACCU( 1381 -GUUGAAAA) AGGUU|UGG- AUGAG-UUGU GAAUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 UGGAGAUAUC UUGUUCUCUC CGAAAUAACU (-UUAG)GGU UAGC|-CUCG GAUa---au| 1501 aagc|UUUUG G|GGGUAG|A GC-ACUGA-A UUCUAGC-GG |-GGGCC(ua cc-)GGCUUA 1561 CCAACGGAAA -UCAAACUCC GAA-UA-|CC A-G-A-A--- gc-----ga| GUC-CGGGAG 1621 AUAGAC--AG C-GGGG(GCU AAG)CUUCGU -UGUC-GAGA GGG(-GAACA G-)CCCAGAC 1681 CGCCGAUUAA G-GU|CCCU- AAUUU-UAUG -C-UAA-GUG ------GGUA AGGAAGUG-A 1741 UGAUUCGAA- GACAGUUGGA AUGUUGGC(U UAGAGGCA)G CAAU-CAU|U (UAA)A|GAG 1801 UGC(GUAACA )GC|UCACCA AU-----CGA GA-AUC-AU- -UGC|GCCGA UAAU-AAA-- 1861 CGGGACU-AA GCAUA-A|A| ACCGACAUC| GCGG|gugug uc-----(ga uaa------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --gacacgc- GG-UAGGAGA G|-----CGU 2221 A-GUA-UUC- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --A-GCAG-A 2341 GAAGGUG-U- A-CC(-GGAA -)GGA--GCG CUGG|AGCGG A-UACUAGUG AAGAUCCAUG 2401 GC|AUA-AGU A--ACGAUAA AGGGAG(UGA AAAU)CUCCC U|CGCC-GUA AGCCCAAGGU 2461 UUCCAG-GGU CAAG-(CUCG U)CU|U-CCC UGGGUUAGU| CGG|C-CCCU AAGUUGAGGC 2521 G(UAAC)-U- GCGU-AGACG AUGGAGCAGC AGG-(UUAAA UAUU)C-CUG C|AC|ca-c- 2581 cu-aaa-acu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---auagcga a------gga a--uga-cgg aguaaguua- -agc-ac|gc g-gac(ga-- 2761 uugg-a-aga --)gu-ccgu -|aga----- ---------- ---gcga-ug agaa------ 2821 --cgguu-ag uagg(ca-aa -u-)cc|g-- cuaacauaa- ---------- gauc-agguc 2881 gcg-auca|a gg-|------ -----ggaau c(-uucg--) ggggaa---- ------ccga 2941 uggugug--g agcg-agg-| cuuucaagaa auaauuuc-u a-gcu----- -------g-u 3001 -ugaug--gu g|a|CCGUAC CA-AAACC(G ACACA)GG|U GG-GCGAGA- U-(GAAUA)U 3061 UCUAAGGCGC ||GCGAGAUA ACUUUCGUU- ---------- ----AAGGAA CUCGGCAAAU 3121 UAUCCCCGUA AC(-UUCG)G AAUAAGGGGA |GCCUU--uu -aggguga-- -------cua 3181 u(ggaacg)a uag-g----- --a-gcccc- gg-GGGG-C| C(GCA)GAGA AAUGGCC-CA 3241 GG|CGACU-- ---GU(UUAG CAAAA)ACAC AGCACUAUG| CAAACCU(cu aa------)G 3301 GGGAAGU-AU AUGGUGUGA- CGCCUGCCCA AU|GCCA-AA A-GGUUAAAG GGAUAUGUCA 3361 GCU------- (G-CAA)--- -------AGC GA-AGCAUUG AACCUAAGCC |CUGGUGAAU 3421 |-GGC|CGCC GU(AACUAUA )ACGGUG|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGUGUAAC GA-UCUGGGC ACUGUCUCAA CGAAAGACUC 3541 G|GUGAAAUU |GUAGUAG-C AG(UGAAGAU G)CUGUUUAC CCGCGAA-AG GACGAAAAGA 3601 CCCCGUGA|A CCU-UUACUG U|ACUUUGGU AUU|GAUUUU UGGUUUGUUA UGUGUAGGAU 3661 AGCCAGGAGA CUAAGAAC-- ACUCUUC(UU CA)GGAGAGU GGGAGUCAAC -G-UUGAAAU 3721 ACUGGU|CUU A-ACAAGCUG GGA-AUCUAA -cauuau--- -ucca(-uga -auc)-ugga 3781 agaug-GACA UUGCCAGACG GG-CAGUUUU ACUG(GGG)C GGUA|UCCUC C(UAA-AAAG 3841 UAAC)GGAGG A|G|C|CCAA AGCUUAUU|U CAUCGUGG(U UGGCAA)UCA CGAGUA-GA| 3901 GC(G|UAAAG )GUAUAAGAU AGGUUGACUG CAAGAC(CAA CAA)GUCGAG CAGAGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGCGGUGG AA(AGUGGA) AUC|GCCGUC GCUUAAC|GG 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UGA--UCGCC ACCAAGA(G- UUC-AUA)UC 4081 GACGUGG-CG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GGAG 4141 A---A)-GGU CCCAAGGGU| UUGGC(UGUU C)GC-CAAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-AAAC |GUC(GUGA) -GACAGUU-U GGU-CUCUAU -CC|UUCGUG G-G|CG-CAG 4261 GAUACUU|GA -|GAGGAGC- UGU------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAAUGG|ACG AACCAAUGGU GUGUCGGU|U GUUUU(GC-C A-)AGGGCA- UAGCCGGGUG 4381 GCUcACGUUC GGAAAGGAUA AGCAUU(GAA AGCAUCUA)A AUGCCAAGCC UCCCUC|AAG 4441 AUAAGGUAUC C|CA|----- -(------)- -------AU- GAGA|-CU|C CAUG-(UAGA 4501 CU-A)CGUGG -UUGAUAG|G UUGG|AGGUG -UAAGCACA- -(GUAA-)-- UGUGU|UC-A 4561 GCUA|A|CCA AUACUAAUA- AGUCCAAAG| ACUUGG-UCU U-------|u uuaugauugg 4621 aagagccgaa aggcaaagac aauaagaaaa agaguagaga gugcaaguac guagaagaca 4681 agcuuuuaag cgucuauuag uauacgugag a-aacgaugc caggauuagc uuggugauaa 4741 uagagagagg gaaa||||| // LOCUS C.trach.02 4759 bp RNA RNA 20-MAY-1998 DEFINITION Chlamydia trachomatis.; . ACCESSION AE0013 7 AE00 273 KEYWORDS . SOURCE Chlamydia trachomatis. ORGANISM Chlamydia trachomatis. REFERENCE 1 (bases 1 to 10382) AUTHORS Koonin,E.V. and Davis,R.W. Stephens,R.S., Kalman,S., Lammel,C.J., Fan,J., Marathe,R., Aravind,L., Mitchell,W.P., Olinger,L., Tatusov,R.L., Zhao,Q., TITLE Genome Sequence of an Obligate Intracellular Pathogen of Humans: Chlamydia trachomatis JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 10382) AUTHORS Stephens,R.S., Kalman,S., Lammel,C.J., Fan,J., Marathe,R., Aravind,L., Mitchell,W.P., Olinger,L., Tatusov,R.L., Zhao, Q., Koonin,E.V. and Davis,R.W. TITLE Direct Submission JOURNAL Submitted (20-MAY-1998) Program in Infectious Diseases, University of California, 235 Warren Hall, Berkeley, CA 94720-7360, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: AE001347 BASE COUNT 933 a 592 c 891 g 661 t 1682 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- ----UACAGA CCAAGUUAA- --UAAGAGCU AUUGGUGGAU 121 G|CCUUGG|C AUUGAC|AG| GC-GAAGAAG GA|CGCG(AA UA-CC-)U|- GCG-AAAAGC 181 UCCGGC|-GA GCU(G-GU-G AUA-)AGCAA AG-ACC-CGG AGGUA|UCCG AAUGGG(GAA 241 A)CCC|ggua gag-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uaaua)- gacuacc-AU UG-CAUGCU( 481 GA-AUACA-- UA)GGU-AUG -C-A--AAG- CGACAC|CU- GCCGAACU|G A(AACA)UCU 541 UAGUA-AGCA GAGGAAAAGA AAUC(-gaa- --)GAGAU|U CC-CUGUGUA GC(GGCGA)G 601 CGA-AAG-GG GA-AUA-GCC UAAAccgagc -u-------- -----(gaua a)-------- 661 -----ggcuc gggguuguag gauugagga- ---------- ---------- ---------- 721 ---------- uaaaggauca ggacuccu-a guuGAAcaca u-c(u-ggaa a)g-auggau 781 |g(aua)caG GG(UGAUAGU )CCCGU-Aga c-gaaaggag agaaagacc- ---------- 841 ---------- -gacc-ucaa caccu---GA GUAGGACUAG A(CACGUG-A AA)CCUAGUC 901 UGAAUCU-GG G-GA(GACCA C)UC-UCC-A AGGCUAA--- -AUACUAGUC AAUGACCGAU 961 AGUG-AAC-C AGUACU(GUG A)-AGGA-AA GGCGAAAA-G AACCCU(ugu ua-)AGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAG-UAGCU UACAA-G-CG GUCGGAGACC -aau----gg 1081 ccc-----(- ---guaa--) --------gg guc-aa-GGU UGACGGCGUG CCU(UUU-GC 1141 AU|G)AUGA| -GCCAGGGAG UUAA-GCUA- AACGGC-GAG GUUAAGGGA( uauaca)UUC 1201 C-GGAGCCGG AGC(GAAA-) GCGAGUUU(U AA-AA)GAGC GA-------- ---------- 1261 ---------- ------a-ga G-UCGUUUGG UUUA-GACAC GAAAC-CAA- GUGA-GCUAU 1321 UUAUGAC|CA GGUUGAAGCA UGGG(UAAA) AC-UAUGUGG AGGACCGAAC U-AGUACCU( 1381 -GUUGAAAA) AGGUU|UGG- AUGAG-UUGU GAAUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 UGGAGAUAUC UUGUUCUCUC CGAAAUAACU (-UUAG)GGU UAGC|-CUCG GAUa---au| 1501 aagc|UUUUG G|GGGUAG|A GC-ACUGA-A UUCUAGC-GG |-GGGCC(ua cc-)GGCUUA 1561 CCAACGGAAA -UCAAACUCC GAA-UA-|CC A-G-A-A--- gc-----ga| GUC-CGGGAG 1621 AUAGAC--AG C-GGGG(GCU AAG)CUUCGU -UGUC-GAGA GGG(-GAACA G-)CCCAGAC 1681 CGCCGAUUAA G-GU|CCCU- AAUUU-UAUG -C-UAA-GUG ------GGUA AGGAAGUG-A 1741 UGAUUCGAA- GACAGUUGGA AUGUUGGC(U UAGAGGCA)G CAAU-CAU|U (UAA)A|GAG 1801 UGC(GUAACA )GC|UCACCA AU-----CGA GA-AUC-AU- -UGC|GCCGA UAAU-AAA-- 1861 CGGGACU-AA GCAUA-A|A| ACCGACAUC| GCGG|gugug uc-----(ga uaa------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --gacacgc- GG-UAGGAGA G|-----CGU 2221 A-GUA-UUC- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --A-GCAG-A 2341 GAAGGUG-U- A-CC(-GGAA -)GGA--GCG CUGG|AGCGG A-UACUAGUG AAGAUCCAUG 2401 GC|AUA-AGU A--ACGAUAA AGGGAG(UGA AAAU)CUCCC U|CGCC-GUA AGCCCAAGGU 2461 UUCCAG-GGU CAAG-(CUCG U)CU|U-CCC UGGGUUAGU| CGG|C-CCCU AAGUUGAGGC 2521 G(UAAC)-U- GCGU-AGACG AUGGAGCAGC AGG-(UUAAA UAUU)C-CUG C|AC|ca-c- 2581 cu-aaa-acu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---auagcga a------gga a--uga-cgg aguaaguua- -agc-ac|gc g-gac(ga-- 2761 uugg-a-aga --)gu-ccgu -|aga----- ---------- ---gcga-ug agaa------ 2821 --cgguu-ag uagg(ca-aa -u-)cc|g-- cuaacauaa- ---------- gauc-agguc 2881 gcg-auca|a gg-|------ -----ggaau c(-uucg--) ggggaa---- ------ccga 2941 uggugug--g agcg-agg-| cuuucaagaa auaauuuc-u a-gcu----- -------g-u 3001 -ugaug--gu g|a|CCGUAC CA-AAACC(G ACACA)GG|U GG-GCGAGA- U-(GAAUA)U 3061 UCUAAGGCGC ||GCGAGAUA ACUUUCGUU- ---------- ----AAGGAA CUCGGCAAAU 3121 UAUCCCCGUA AC(-UUCG)G AAUAAGGGGA |GCCUU--uu -aggguga-- -------cua 3181 u(ggaacg)a uag-g----- --a-gcccc- gg-GGGG-C| C(GCA)GAGA AAUGGCC-CA 3241 GG|CGACU-- ---GU(UUAG CAAAA)ACAC AGCACUAUG| CAAACCU(cu aa------)G 3301 GGGAAGU-AU AUGGUGUGA- CGCCUGCCCA AU|GCCA-AA A-GGUUAAAG GGAUAUGUCA 3361 GCU------- (G-CAA)--- -------AGC GA-AGCAUUG AACCUAAGCC |CUGGUGAAU 3421 |-GGC|CGCC GU(AACUAUA )ACGGUG|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGUGUAAC GA-UCUGGGC ACUGUCUCAA CGAAAGACUC 3541 G|GUGAAAUU |GUAGUAG-C AG(UGAAGAU G)CUGUUUAC CCGCGAA-AG GACGAAAAGA 3601 CCCCGUGA|A CCU-UUACUG U|ACUUUGGU AUU|GAUUUU UGGUUUGUUA UGUGUAGGAU 3661 AGCCAGGAGA CUAAGAAC-- ACUCUUC(UU CA)GGAGAGU GGGAGUCAAC -G-UUGAAAU 3721 ACUGGU|CUU A-ACAAGCUG GGA-AUCUAA -cauuau--- -ucca(-uga -auc)-ugga 3781 agaug-GACA UUGCCAGACG GG-CAGUUUU ACUG(GGG)C GGUA|UCCUC C(UAA-AAAG 3841 UAAC)GGAGG A|G|C|CCAA AGCUUAUU|U CAUCGUGG(U UGGCAA)UCA CGAGUA-GA| 3901 GC(G|UAAAG )GUAUAAGAU AGGUUGACUG CAAGAC(CAA CAA)GUCGAG CAGAGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGCGGUGG AA(AGUGGA) AUC|GCCGUC GCUUAAC|GG 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UGA--UCGCC ACCAAGA(G- UUC-AUA)UC 4081 GACGUGG-CG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GGAG 4141 A---A)-GGU CCCAAGGGU| UUGGC(UGUU C)GC-CAAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-AAAC |GUC(GUGA) -GACAGUU-U GGU-CUCUAU -CC|UUCGUG G-G|CG-CAG 4261 GAUACUU|GA -|GAGGAGC- UGU------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAAUGG|ACG AACCAAUGGU GUGUCGGU|U GUUUU(GC-C A-)AGGGCA- UAGCCGAGUA 4381 GCU-ACGUUC GGAAAGGAUA AGCAUU(GAA AGCAUCUA)A AUGCCAAGCC UCCCUC|AAG 4441 AUAAGGUAUC C|CA|----- -(------)- -------AU- GAGA|-CU|C CAUG-(UAGA 4501 CU-A)CGUGG -UUGAUAG|G UUGG|AGGUG -UAAGCACA- -(GUAA-)-- UGUGU|UC-A 4561 GCUA|A|CCA AUACUAAUA- AGUCCAAAG| ACUUGG-UCU U-------|u uuaugauugg 4621 aagagccgaa aggcaaagac aauaagaaaa agaguagaga gugcaaguac guagaagaca 4681 agcuuuuaag cgucuauuag uauacgugag a-aacgaugc caggauuagc uuggugauaa 4741 uagaga---- ---|||||| // LOCUS C.trach.03 4759 bp RNA RNA 18-SEP-1997 DEFINITION Chlamydia trachomatis.; . ACCESSION U68420 KEYWORDS . SOURCE Chlamydia trachomatis. ORGANISM Chlamydia trachomatis. REFERENCE 1 (bases 1 to 2762) AUTHORS Everett,K.D. and Andersen,A.A. TITLE gene are phylogenetic markers for Chlamydia spp The ribosomal intergenic spacer and domain I of the 23S rRNA JOURNAL Int. J. Syst. Bacteriol. 47 (2), 461-473 (1997) STANDARD No information REFERENCE 2 (bases 1 to 2762) AUTHORS Everett,K.D.E. and Andersen,A.A. TITLE Direct Submission JOURNAL Submitted (29-AUG-1996) USDA-ARS-NADC, 2300 Dayton Avenue, Ames, IA 50010, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U68420 BASE COUNT 608 a 379 c 580 g 397 t 2795 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ----aaau|- ----UACAGA CCAAGUUGA- --UAAGAGCU AUUGGUGGAU 121 G|CCUUGG|C AUUGAC|AG| GC-GAAGAAG GA|CGCG(AA UA-CC-)U|- GCG-AAAAGC 181 UCCGGC|-GA GCU(G-GU-G AUA-)AGCAA CG-ACC-CGG AGGUA|UCCG AAUGGG(GAA 241 A)CCC|ggua gag-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uaaua)- gucuacc-AU UG-UAUACU( 481 GA-ACACA-- UA)GGU-AUA -C-A--AAG- CGACAC|CU- GCCGAACU|G A(AACA)UCU 541 UAGUA-AGCA GAGGAAAAGA AAUC(-gaa- --)GAGAU|U CU-CUGUGUA GC(GGCGA)G 601 CGA-AAG-GG GA-AGA-GCC UAAAccgagc -u-------- -----(gaag a)-------- 661 -----agcga gggguuguag gguugagga- ---------- ---------- ---------- 721 ---------- aaaaggauca ggacuccu-a guuGAAcaca u-c(u-ggaa a)g-guggau 781 |g(aua)caG GG(UGAUAGU )CCCGU-Aga c-gaaaggag agaaagacu- ---------- 841 ---------- -gacc-ucaa uaccu---GA GUAGGACUAG A(CACGUG-A AA)CCUAGUC 901 UGAAUCU-GG G-GA(GACCA C)UC-UCC-A AGGCUAA--- -AUACUAGUC AAUGACCGAU 961 AGUG-AAC-C AGUACU(GUG A)-AGGA-AA GGCGAAAA-G AACCCU(ugu ua-)AGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAA-UAGCU UACAA-G-CG GUCGGAGACC -uau----gg 1081 ccc-----(- ---guaa--) --------gg guu-aa-GGU UGACGGCGUG CCU(UUU-GC 1141 AU|G)AUGA| -GCCAGGGAG UUAA-GCUA- AACGGC-GAG GUUAAGGGA( uguaca)UUC 1201 C-GGAGCCGA AGC(GAAA-) GCGAGUUU(U AA-AA)GAGC GU-------- ---------- 1261 ---------- ------u-ua G-UCGUUUGG UUUA-GACAC GAAAC-CAA- GUGA-GCUAU 1321 UUAUGAC|CA GGUUGAAGCA UGGG(UAAA) AC-UAUGUGG AGGACCGAAC U-AGUACCU( 1381 -GUUGAAAA) AGGUU|UGG- AUGAG-UUGU GAAUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 UGGAGAUAUC UUGUUCUCUC CGAAAUAACU (-AUAG)GGU UAGC|-CUCG GAUa---au| 1501 aagc|UUUUG G|GGGUAG|A GC-ACUGA-A UUCUAGC-GG |-GGGCC(ua cc-)GGCUUA 1561 CCAACGGAAA -UCAAACUCC GAA-UA-|CC A-G-A-A--- gc-----ga| GUC-CGGGAG 1621 AUAGAC--AG C-GGGG(GCU AAG)CUUCGU -UGUC-GAGA GGG(-GAGCA G-)CCCAGAC 1681 CGCCGAUUAA G-GU|CCCU- AAUUU-UAUG -C-UAA-GUG ------AGUA AGGAAGUG-A 1741 UGAUUCAAA- GACAGUUGGA AUGUUGGC(U UAGAGGCA)G CAAU-CAU|U (UAA)A|GAG 1801 UGC(GUAACA )GC|UCACCA AU-----CGA GA-AUC-AU- -UGC|GCCGA UAAU-AAA-- 1861 CGGGGCU-AA GCAUA-A|A| ACCGACAUC| GCGG|gugug uc-----(g- uaa------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --ggcacgc- GG-UAGGAGA G|-----CGU 2221 A-GUA-UUC- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --A-GCAG-A 2341 GAAGGUG-U- A-CC(-GAAA -)GGA--GCG CUGG|AGCGG A-UACUAGUG AAGAUCCAUG 2401 GC|AUA-AGU A--ACGAUAA AGGGAG(UGA AAAU)CUCCC U|CGCC-GUA AGCCCAAGGU 2461 UUCCAG-GGU CAAG-(CUCG U)CU|U-CCC UGGGUUAGU| CGG|C-CCCU AAGUUGAGGC 2521 G(UAAC)-U- GCGU-AGACG AUGGAGCAGC AGG-(UUAAA UAUU)C-CUG C|AC|ca-c- 2581 cu-aag-acu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---auagcga a------gga a--uga-cgg aguaaguua- -agc-ac|gc g-gac(ga-- 2761 uugg-a-agu --)gu-ccgu -|aga----- ---------- ---gcga-ug agaa------ 2821 --cgguu-ag uagg(ca-aa -u-)cc|g-- cuaacagaa- ---------- gauc-agguc 2881 gcg-auca|a gg-|------ -----ggaau c(-uucg--) gaggaa---- ------ccga 2941 uggugug--u agcg-agg-| cuuucaagaa auaauuuc-u a-gcu----- -------g-u 3001 -ugaug--gu g|a|CCGUAC CA-AAACC(G ACACA)GG|U GG-GCGAGA- U-(GAGUA)U 3061 UCUAAGGCGC ||GCGAGAUA ACUUUCGUU- ---------- ----AAGGAA CUCGGCAAAU 3121 UAUCCCCGUA AC(-UUCG)G GAUAAGGGGA |GCCUU--uu -aggguga-- -------cua 3181 u(ggaacg)a uag-g----- --a-gcccc- gg-GGGG-C| C(GCA)GAGA AAUGGCC-CA 3241 GG|CGACU-- ---GU(UUAG CAAAA)ACAC AGCACUAUG| CAAACCU(cg aa------)G 3301 GGGAAGU-AU AUGGUGUGA- CGCCUGCCCA AU|GCCA-AA A-GGUUAAAG GGAUAUGUCA 3361 GCU------- (G-CAA)--- -------AGC GA-AGCAUUG AACCUAAGCC |CUGGUGAAU 3421 |-GGC|CGCC ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.trach.04 4759 bp RNA RNA 18-SEP-1997 DEFINITION Chlamydia trachomatis.; . ACCESSION U68443 KEYWORDS . SOURCE Chlamydia trachomatis. ORGANISM Chlamydia trachomatis. REFERENCE 1 (bases 1 to 1304) AUTHORS Everett,K.D. and Andersen,A.A. TITLE gene are phylogenetic markers for Chlamydia spp The ribosomal intergenic spacer and domain I of the 23S rRNA JOURNAL Int. J. Syst. Bacteriol. 47 (2), 461-473 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1304) AUTHORS Everett,K.D.E. and Andersen,A.A. TITLE Direct Submission JOURNAL Submitted (29-AUG-1996) USDA-ARS-NADC, 2300 Dayton Avenue, Ames, IA 50010, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U68443 BASE COUNT 281 a 151 c 250 g 164 t 3913 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ----aaau|- ----UACAGA CCAAGUUAA- --UAAGAGCU AUUGGUGGAU 121 G|CCUUGG|C AUUGAC|AG| GC-GAAGAAG GA|CGCG(AA UA-CC-)U|- GCG-AAAAGC 181 UCCGGC|-GA GCU(G-GU-G AUA-)AGCAA AG-ACC-CGG AGGUA|UCCG AAUGGG(GAA 241 A)CCC|ggua gag-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uaaua)- gacuacc-AU UG-CAUGCU( 481 GA-AUACA-- UA)GGU-AUG -C-A--AAG- CGACAC|CU- GCCGAACU|G A(AACA)UCU 541 UAGUA-AGCA GAGGAAAAGA AAUC(-gaa- --)GAGAU|U CC-CUGUGUA GC(GGCGA)G 601 CGA-AAG-GG GA-AUA-GCC UAAAccgagc -u-------- -----(gaua a)-------- 661 -----ggcuc gggguuguag gauugagga- ---------- ---------- ---------- 721 ---------- uaaaggauca ggacuccu-a guuGAAcaca u-c(u-ggaa a)g-auggau 781 |g(aua)caG GG(UGAUAGU )CCCGU-Aga c-gaaaggag agaaagacc- ---------- 841 ---------- -gacc-ucaa caccu---GA GUAGGACUAG A(CACGUG-A AA)CCUAGUC 901 UGAAUCU-GG G-GA(GACCA C)UC-UCC-A AGGCUAA--- -AUACUAGUC AAUGACCGAU 961 AGUG-AAC-C AGUACU(GUG A)-AGGA-AA GGCGAAAA-G AACCCU(ugu ua-)AGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAG-UAGCU UACAA-G-CG GUCGGAGACC -aau----gg 1081 ccc-----(- ---guaa--) --------gg guc-aa-GGU UGACGGCGUG CCU(UUU-GC 1141 AU|G)AUGA| -GCCAGGGAG UUAA-GCUA- AACGGC-GAG GUUAAGGGA( uauaca)UUC 1201 C-GGAGCCGG AGC(GAAA-) GCGAGUUU(U AA-AA)GAGC GA-------- ---------- 1261 ---------- ------a-ga G-UCGUUUGG UUUA-GACAC GAAAC-CAA- GUGA-GCUAU 1321 UUAUGAC|CA GGUUGAAGCA UGGG(UAAA) AC-UAUGUGG AGGACCGAAC U-AGUACCU( 1381 -GUUGAAAA) AGGUU|UGG- AUGAG-UUGU GAAUAGGGGU (-GAAAG)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |-~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~-~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.trach.05 4759 bp RNA RNA 18-SEP-1997 DEFINITION Chlamydia trachomatis.; . ACCESSION U68427 KEYWORDS . SOURCE Chlamydia trachomatis. ORGANISM Chlamydia trachomatis. REFERENCE 1 (bases 1 to 1299) AUTHORS Everett,K.D. and Andersen,A.A. TITLE The ribosomal intergenic spacer and domain I of the 23S rRNA gene are phylogenetic markers for Chlamydia spp JOURNAL Int. J. Syst. Bacteriol. 47 (2), 461-473 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1299) AUTHORS Everett,K.D.E. and Andersen,A.A. TITLE Direct Submission JOURNAL Submitted (29-AUG-1996) USDA-ARS-NADC, 2300 Dayton Avenue, Ames, IA 50010, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U68427 BASE COUNT 278 a 151 c 253 g 164 t 3913 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ----aaau|- ----UACAGA CCAAGUUGA- --UAAGAGCU AUUGGUGGAU 121 G|CCUUGG|C AUUGAC|AG| GC-GAAGAAG GA|CGCG(AA UA-CC-)U|- GCG-AAAAGC 181 UCCGGC|-GA GCU(G-GU-G AUA-)AGCAA CG-ACC-CGG AGGUA|UCCG AAUGGG(GAA 241 A)CCC|ggua gag-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uaaua)- gucuacc-AU UG-UAUACU( 481 GA-ACACA-- UA)GGU-AUA -C-A--AAG- CGACAC|CU- GCCGAACU|G A(AACA)UCU 541 UAGUA-AGCA GAGGAAAAGA AAUC(-gaa- --)GAGAU|U CC-CUGUGUA GC(GGCGA)G 601 CGA-AAG-GG GA-AGA-GCC UAAAccgagc -c-------- -----(gaag a)-------- 661 -----agcga gggguuguag gguugagga- ---------- ---------- ---------- 721 ---------- aaaaggauca ggacuccu-a guuGAAcaca u-c(u-ggaa a)g-guggau 781 |g(aua)caG GG(UGAUAGU )CCCGU-Aga c-gaaaggag agaaagacc- ---------- 841 ---------- -gacc-ucaa uaccu---GA GUAGGACUAG A(CACGUG-A AA)CCUAGUC 901 UGAAUCU-GG G-GA(GACCA C)UC-UCC-A AGGCUAA--- -AUACUAGUC AAUGACCGAU 961 AGUG-AAC-C AGUACU(GUG A)-AGGA-AA GGCGAAAA-G AACCCU(ugu ua-)AGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAG-UAGCU UACAA-G-CG GUCGGAGACC -uac----gg 1081 ccc-----(- ---gcaa--) --------gg guu-aa-GGU UGACGGCGUG CCU(UUU-GC 1141 AU|G)AUGA| -GCCAGGGAG UUAA-GCUA- AACGGC-GAG GUUAAGGGA( uguaca)UUC 1201 U-GGAGCCGG AGC(GAAA-) GCGAGUUU(U AA-AA)GAGC GU-------- ---------- 1261 ---------- ------a-ua G-UCGUUUGG UUUA-GACAC GAAAC-CAA- GUGA-GCUAU 1321 UUAUGAC|CA GGUUGAAGCA UGGG(UAAA) AC-UAUGUGG AGGACCGAAC U-AGUACCU( 1381 -GUUGAAAA) AGGUU|UGG- AUGAG-UUGU GAAUAGGGGU (-GAAAG)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |-~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~-~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.trach.06 4759 bp RNA RNA 18-SEP-1997 DEFINITION Chlamydia trachomatis.; . ACCESSION U68428 KEYWORDS . SOURCE Chlamydia trachomatis. ORGANISM Chlamydia trachomatis. REFERENCE 1 (bases 1 to 1299) AUTHORS Everett,K.D. and Andersen,A.A. TITLE The ribosomal intergenic spacer and domain I of the 23S rRNA gene are phylogenetic markers for Chlamydia spp JOURNAL Int. J. Syst. Bacteriol. 47 (2), 461-473 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1299) AUTHORS Everett,K.D.E. and Andersen,A.A. TITLE Direct Submission JOURNAL Submitted (29-AUG-1996) USDA-ARS-NADC, 2300 Dayton Avenue, Ames, IA 50010, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U68428 BASE COUNT 279 a 149 c 251 g 167 t 3913 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ----aaau|- ----UACAGA CCAAGUUGA- --UAAGAGCU AUUGGUGGAU 121 G|CCUUGG|C AUUGAC|AG| GC-GAAGAAG GA|CGCG(AA UA-CC-)U|- GCG-AAAAGC 181 UCCGGC|-GA GCU(G-GU-G AUA-)AGCAA CG-ACC-CGG AGGUA|UCCG AAUGGG(GAA 241 A)CCC|ggua gag-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uaaua)- gucuacc-AU UG-UAUACU( 481 GA-ACACA-- UA)GGU-AUA -C-A--AAG- CGACAC|CU- GCCGAACU|G A(AACA)UCU 541 UAGUA-AGCA GAGGAAAAGA AAUC(-gaa- --)GAGAU|U CC-CUGUGUA GC(GGCGA)G 601 CGA-AAG-GG GA-AGA-GCC UAAAccgagc -u-------- -----(gaag a)-------- 661 -----agcga gggguuguag gguugagga- ---------- ---------- ---------- 721 ---------- aaaaggauca ggacuccu-a guuGAAcaca u-c(u-ggaa a)g-guggau 781 |g(aua)caG GG(UGAUAGU )CCCGU-Aga c-gaaaggag agaaagacc- ---------- 841 ---------- -gacc-ucaa uaccu---GA GUAGGACUAG A(CACGUG-A AA)CCUAGUC 901 UGAAUCU-GG G-GA(GACCA C)UC-UCC-A AGGCUAA--- -AUACUAGUC AAUGACCGAU 961 AGUG-AAC-C AGUACU(GUG A)-AGGA-AA GGCGAAAA-G AACCCU(ugu ua-)AGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAA-UAGCU UACAA-G-CG GUCGGAGACC -uau----gg 1081 ccc-----(- ---guaa--) --------gg guu-aa-GGU UGACGGCGUG CCU(UUU-GC 1141 AU|G)AUGA| -GCCAGGGAG UUAA-GCUA- AACGGC-GAG GUUAAGGGA( uguaca)UUC 1201 C-GGAGCCGA AGC(GAAA-) GCGAGUUU(U AA-AA)GAGC GU-------- ---------- 1261 ---------- ------u-ua G-UCGUUUGG UUUA-GACAC GAAAC-CAA- GUGA-GCUAU 1321 UUAUGAC|CA GGUUGAAGCA UGGG(UAAA) AC-UAUGUGG AGGACCGAAC U-AGUACCU( 1381 -GUUGAAAA) AGGUU|UGG- AUGAG-UUGU GAAUAGGGGU (-GAAAG)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |-~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~-~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.trach.07 4759 bp RNA RNA 18-SEP-1997 DEFINITION Chlamydia trachomatis.; . ACCESSION U68429 KEYWORDS . SOURCE Chlamydia trachomatis. ORGANISM Chlamydia trachomatis. REFERENCE 1 (bases 1 to 1298) AUTHORS Everett,K.D. and Andersen,A.A. TITLE gene are phylogenetic markers for Chlamydia spp The ribosomal intergenic spacer and domain I of the 23S rRNA JOURNAL Int. J. Syst. Bacteriol. 47 (2), 461-473 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1298) AUTHORS Everett,K.D.E. and Andersen,A.A. TITLE Direct Submission JOURNAL Submitted (29-AUG-1996) USDA-ARS-NADC, 2300 Dayton Avenue, Ames, IA 50010, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U68429 BASE COUNT 279 a 149 c 250 g 167 t 3914 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ----aaau|- ----UACAGA CCAAGUUGA- --UAAGAGCU AUUGGUGGAU 121 G|CCUUGG|C AUUGAC|AG| GC-GAAGAAG GA|CGCG(AA UA-CC-)U|- GCG-AAAAGC 181 UCCGGC|-GA GCU(G-GU-G AUA-)AGCAA CG-ACC-CGG AGGUA|UCCG AAUGGG(GAA 241 A)CCC|ggua gag-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uaaua)- gucuacc-AU UG-UAUACU( 481 GA-ACACA-- UA)GGU-AUA -C-A--AAG- CGACAC|CU- GCCGAACU|G A(AACA)UCU 541 UAGUA-AGCA GAGGAAAAGA AAUC(-gaa- --)GAGAU|U CC-CUGUGUA GC(GGCGA)G 601 CGA-AAG-GG GA-AGA-GCC UAAAccgagc -u-------- -----(gaag a)-------- 661 -----agcga gggguuguag gguugagga- ---------- ---------- ---------- 721 ---------- aaaaggauca ggacuccu-a guuGAAcaca u-c(u-ggaa a)g-guggau 781 |g(aua)caG GG(UGAUAGU )CCCGU-Aga c-gaaaggag agaaagacc- ---------- 841 ---------- -gacc-ucaa uaccu---GA GUAGGACUAG A(CACGUG-A AA)CCUAGUC 901 UGAAUCU-GG G-GA(GACCA C)UC-UCC-A AGGCUAA--- -AUACUAGUC AAUGACCGAU 961 AGUG-AAC-C AGUACU(GUG A)-AGGA-AA GGCGAAAA-G AACCCU(ugu ua-)AGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAA-UAGCU UACAA-G-CG GUCGGAGACC -uau----gg 1081 ccc-----(- ---guaa--) --------gg guu-aa-GGU UGACGGCGUG CCU(UUU-GC 1141 AU|G)AUGA| -GCCAGG-AG UUAA-GCUA- AACGGC-GAG GUUAAGGGA( uguaca)UUC 1201 C-GGAGCCGA AGC(GAAA-) GCGAGUUU(U AA-AA)GAGC GU-------- ---------- 1261 ---------- ------u-ua G-UCGUUUGG UUUA-GACAC GAAAC-CAA- GUGA-GCUAU 1321 UUAUGAC|CA GGUUGAAGCA UGGG(UAAA) AC-UAUGUGG AGGACCGAAC U-AGUACCU( 1381 -GUUGAAAA) AGGUU|UGG- AUGAG-UUGU GAAUAGGGGU (-GAAAG)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |-~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~-~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.trach.08 4759 bp RNA RNA 18-SEP-1997 DEFINITION Chlamydia trachomatis.; . ACCESSION U68430 KEYWORDS . SOURCE Chlamydia trachomatis. ORGANISM Chlamydia trachomatis. REFERENCE 1 (bases 1 to 1302) AUTHORS Everett,K.D. and Andersen,A.A. TITLE gene are phylogenetic markers for Chlamydia spp The ribosomal intergenic spacer and domain I of the 23S rRNA JOURNAL Int. J. Syst. Bacteriol. 47 (2), 461-473 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1302) AUTHORS Everett,K.D.E. and Andersen,A.A. TITLE Direct Submission JOURNAL Submitted (29-AUG-1996) USDA-ARS-NADC, 2300 Dayton Avenue, Ames, IA 50010, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U68430 BASE COUNT 274 a 149 c 259 g 164 t 3913 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ----aaaa|- ----UACAGA CCAAGUUGA- --UAAGAGCU AUUGGUGGAU 121 G|CCUUGG|C AUUGAC|AG| GC-GAAGAAG GA|CGCG(AA UA-CC-)U|- GCG-AAAAGC 181 UCCGGC|-GA GCU(G-GU-G AUA-)AGCAA AG-ACC-CGG AGGUA|UCCG AAUGGG(GGA 241 A)CCC|ggua gag-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uaaua)- gacuacc-AU UG-UAUGCU( 481 GA-ACACA-- UA)GGC-AUA -C-A--AAG- CGACAC|CU- GCCGAACU|G A(AACA)UCU 541 UAGUA-AGCA GAGGAAAAGA AAUC(-gaa- --)GAGAU|U CC-CUGUGUA GC(GGCGA)G 601 CGA-AAG-GG GA-AGA-GCC UAAAccgagc -u-------- -----(gaag a)-------- 661 -----agcga gggguuguag gguugaggg- ---------- ---------- ---------- 721 ---------- agaaggauca ggacuccu-a guuGAAcaca u-c(u-ggaa a)g-guggau 781 |g(aua)caG GG(UGAUAGU )CCCGU-Aga c-gaaaggag agauagacc- ---------- 841 ---------- -gacc-ucga uaccu---GA GUAGGGCUAG A(CACGUG-A AA)CCUAGUC 901 UGAAUCU-GG G-GA(GACCA C)UC-UCC-A AGGCUAA--- -AUACUAGUC AAUGACCGAU 961 AGUG-AAC-C AGUACU(GUG A)-AGGA-AA GGCGAAAA-G AACCCU(ugu ua-)AGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAG-UAGCU UACAA-G-CG GUCGGAGACC -uau----gg 1081 ccc-----(- ---gcaa--) --------gg guu-aa-GGU UGACGGCGUG CCU(UUU-GC 1141 AU|G)AUGA| -GCCAGGGAG UUAA-GCUA- AACGGC-GAG GUUAAGGGA( uguaca)UUC 1201 U-GGAGCCGG AGC(GAAA-) GCGAGUUU(U AA-AA)GAGC GU-------- ---------- 1261 ---------- ------a-ua G-UCGUUUGG UUUA-GACAC GAAAC-CAA- GUGA-GCUAU 1321 UUAUGAC|CA GGUUGAAGCA UGGG(UAAA) AC-UAUGUGG AGGACCGAAC U-AGUACCU( 1381 -GUUGAAAA) AGGUU|UGG- AUGAG-UUGU GAAUAGGGGU (-GAAAG)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |-~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~-~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.trach.09 4759 bp RNA RNA 18-SEP-1997 DEFINITION Chlamydia trachomatis.; . ACCESSION U68436 KEYWORDS . SOURCE Chlamydia trachomatis. ORGANISM Chlamydia trachomatis. REFERENCE 1 (bases 1 to 1303) AUTHORS Everett,K.D. and Andersen,A.A. TITLE gene are phylogenetic markers for Chlamydia spp The ribosomal intergenic spacer and domain I of the 23S rRNA JOURNAL Int. J. Syst. Bacteriol. 47 (2), 461-473 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1303) AUTHORS Everett,K.D.E. and Andersen,A.A. TITLE Direct Submission JOURNAL Submitted (29-AUG-1996) USDA-ARS-NADC, 2300 Dayton Avenue, Ames, IA 50010, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U68436 BASE COUNT 274 a 150 c 246 g 177 t 3912 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ----aauu|- ----UACAGA CCAAGUUGA- --UAAGAGCU AUUGGUGGAU 121 G|CCUUGG|C AUUGAC|AG| GC-GAUGAAG GA|CGCG(AA UA-CC-)U|- GCG-AAAAGC 181 UCCGGC|-GA GCU(G-GU-A AUA-)AGCAA AG-ACC-CGG AGGUG|UCCG AAUGGG(GAA 241 A)CCC|ggua gag-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uaaua)- gucuacc-AU UG-UAUACU( 481 GA-AUACA-- UA)GGU-AUG -C-A--AAG- CAACAC|CU- GCUGAACU|G A(AACA)UCU 541 UAGUA-AGCA GAGGAAAAGA AAUC(-gaa- --)GAGAU|U CC-CUGUGUA GC(GGCGA)G 601 CGA-AAG-GG GA-AGA-GCC UAAAccgaac -u-------- -----(uaua -)-------- 661 ------guuc gggguuguag gauugggga- ---------- ---------- ---------- 721 ---------- uaaaggauca agauuccu-a guuGAAcaca u-c(u-ggaa a)g-guggau 781 |g(aaa)caG GG(UGAUAGU )CCCGU-Aga c-gaaaggag aucaagacc- ---------- 841 ---------- -gacc-ucaa caccu---GA GUAGGGCUAG A(CACGUG-A AA)CCUAGUC 901 UGAAUCU-GG G-GA(GACCA C)UC-UCC-A AGGCUAA--- -AUACUAGUC AAUGACCGAU 961 AGUG-AAC-C AGUACU(GUG A)-AGGA-AA GGCGAAAA-G AACCCU(ugu ua-)AGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAG-UAGCU UACAA-G-CG GUCGAAGACC -uau----gu 1081 ccc-----(- --uuuaacg) --------gg guc-ga-GGU UGACGGCGUG CCU(UUU-GC 1141 AU|G)AUGA| -GCCAGGGAG UUAA-GCUA- AACGGC-GAG GUUAAGGGA( uguaca)UUC 1201 C-GGAGCCGA AGC(GAAA-) GCGAGUUU(U AA-AA)GAGC GU-------- ---------- 1261 ---------- ------u-ua G-UCGUUUGG UUUA-GACAC GAAAC-CAA- GUGA-GCUAU 1321 UUAUGAC|CA GGUUGAAGCA UGGG(UAAA) AC-UAUGUGG AGGACCGAAC C-AGUACCU( 1381 -GUUGAAAA) AGGUU|UGG- AUGAG-UUGU GAAUAGGGGU (-GAAAG)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |-~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~-~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.trach.10 4759 bp RNA RNA 18-SEP-1997 DEFINITION Chlamydia trachomatis.; . ACCESSION U68437 KEYWORDS . SOURCE Chlamydia trachomatis. ORGANISM Chlamydia trachomatis. REFERENCE 1 (bases 1 to 1303) AUTHORS Everett,K.D. and Andersen,A.A. TITLE The ribosomal intergenic spacer and domain I of the 23S rRNA gene are phylogenetic markers for Chlamydia spp JOURNAL Int. J. Syst. Bacteriol. 47 (2), 461-473 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1303) AUTHORS Everett,K.D.E. and Andersen,A.A. TITLE Direct Submission JOURNAL Submitted (29-AUG-1996) USDA-ARS-NADC, 2300 Dayton Avenue, Ames, IA 50010, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U68437 BASE COUNT 275 a 150 c 245 g 177 t 3912 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ----aauu|- ----UACAGA CCAAGUUGA- --UAAGAGCU AUUGGUGGAU 121 G|CCUUGG|C AUUGAC|AG| GC-GAUGAAG GA|CGCG(AA UA-CC-)U|- GCG-AAAAGC 181 UCCGGC|-GA GCU(G-GU-A AUA-)AGCAA AG-ACC-CGG AGGUG|UCCG AAUGGG(GAA 241 A)CCC|ggua gag-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uaaua)- gucuacc-AU UG-UAUACU( 481 GA-AUACA-- UA)GGU-AUG -C-A--AAG- CAACAC|CU- GCUGAACU|G A(AACA)UCU 541 UAGUA-AGCA GAGGAAAAGA AAUC(-gaa- --)GAGAU|U CC-CUGUGUA GC(GGCGA)G 601 CGA-AAG-GG GA-AGA-GCC UAAAccgaac -u-------- -----(uaua -)-------- 661 ------guuc gggguuguag gauugggga- ---------- ---------- ---------- 721 ---------- uaaaggauca agauuccu-a guuGAAcaca u-c(u-ggaa a)g-guggau 781 |g(aaa)caG GG(UGAUAGU )CCCGU-Aga c-gaaaggag aucaagacc- ---------- 841 ---------- -gacc-ucaa caccu---GA GUAGGGCUAG A(CACGUG-A AA)CCUAGUC 901 UGAAUCU-GG G-GA(GACCA C)UC-UCC-A AGGCUAA--- -AUACUAGUC AAUGACCGAU 961 AGUG-AAC-C AGUACU(GUG A)-AGGA-AA GGCGAAAA-G AACCCU(ugu ua-)AGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAG-UAGCU UACAA-G-CG GUCGAAGACC -uau----gu 1081 ccc-----(- --uuuaacg) --------gg guc-ga-GGU UGACGGCGUG CCU(UUU-GC 1141 AU|G)AUGA| -GCCAGGGAG UUAA-GCUA- AACGGC-GAG GUUAAGGGA( uguaca)UUC 1201 C-GGAGCCGA AGC(GAAA-) GCGAGUUU(U AA-AA)GAGC GU-------- ---------- 1261 ---------- ------u-ua G-UCGUUUGG UUUA-GACAC GAAAC-CAA- GUGA-GCUAU 1321 UUAUGAC|CA GGUUGAAGCA UGGG(UAAA) AC-UAUGUGG AGGACCGAAC C-AGUACCU( 1381 -GUUGAAAA) AGGUU|UGG- AUGAA-UUGU GAAUAGGGGU (-GAAAG)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |-~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~-~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.trach.11 4759 bp RNA RNA 18-SEP-1997 DEFINITION Chlamydia trachomatis.; . ACCESSION U68438 KEYWORDS . SOURCE Chlamydia trachomatis. ORGANISM Chlamydia trachomatis. REFERENCE 1 (bases 1 to 1304) AUTHORS Everett,K.D. and Andersen,A.A. TITLE The ribosomal intergenic spacer and domain I of the 23S rRNA gene are phylogenetic markers for Chlamydia spp JOURNAL Int. J. Syst. Bacteriol. 47 (2), 461-473 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1304) AUTHORS Everett,K.D.E. and Andersen,A.A. TITLE Direct Submission JOURNAL Submitted (29-AUG-1996) USDA-ARS-NADC, 2300 Dayton Avenue, Ames, IA 50010, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U68438 BASE COUNT 282 a 151 c 249 g 164 t 3913 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ----aaau|- ----UACAGA CCAAGUUAA- --UAAGAGCU AUUGGUGGAU 121 G|CCUUGG|C AUUGAC|AG| GC-GAAGAAG GA|CGCA(AA UA-CC-)U|- GCG-AAAAGC 181 UCCGGC|-GA GCU(G-GU-G AUA-)AGCAA AG-ACC-CGG AGGUA|UCCG AAUGGG(GAA 241 A)CCC|ggua gag-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uaaua)- gacuacc-AU UG-CAUGCU( 481 GA-AUACA-- UA)GGU-AUG -C-A--AAG- CGACAC|CU- GCCGAACU|G A(AACA)UCU 541 UAGUA-AGCA GAGGAAAAGA AAUC(-gaa- --)GAGAU|U CC-CUGUGUA GC(GGCGA)G 601 CGA-AAG-GG GA-AUA-GCC UAAAccgagc -u-------- -----(gaua a)-------- 661 -----ggcuc gggguuguag gauugagga- ---------- ---------- ---------- 721 ---------- uaaaggauca ggacuccu-a guuGAAcaca u-c(u-ggaa a)g-auggau 781 |g(aua)caG GG(UGAUAGU )CCCGU-Aga c-gaaaggag agaaagacc- ---------- 841 ---------- -gacc-ucaa caccu---GA GUAGGACUAG A(CACGUG-A AA)CCUAGUC 901 UGAAUCU-GG G-GA(GACCA C)UC-UCC-A AGGCUAA--- -AUACUAGUC AAUGACCGAU 961 AGUG-AAC-C AGUACU(GUG A)-AGGA-AA GGCGAAAA-G AACCCU(ugu ua-)AGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAG-UAGCU UACAA-G-CG GUCGGAGACC -aau----gg 1081 ccc-----(- ---guaa--) --------gg guc-aa-GGU UGACGGCGUG CCU(UUU-GC 1141 AU|G)AUGA| -GCCAGGGAG UUAA-GCUA- AACGGC-GAG GUUAAGGGA( uauaca)UUC 1201 C-GGAGCCGG AGC(GAAA-) GCGAGUUU(U AA-AA)GAGC GA-------- ---------- 1261 ---------- ------a-ga G-UCGUUUGG UUUA-GACAC GAAAC-CAA- GUGA-GCUAU 1321 UUAUGAC|CA GGUUGAAGCA UGGG(UAAA) AC-UAUGUGG AGGACCGAAC U-AGUACCU( 1381 -GUUGAAAA) AGGUU|UGG- AUGAG-UUGU GAAUAGGGGU (-GAAAG)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |-~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~-~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.trach.12 4759 bp RNA RNA 18-SEP-1997 DEFINITION Chlamydia trachomatis.; . ACCESSION U68440 KEYWORDS . SOURCE Chlamydia trachomatis. ORGANISM Chlamydia trachomatis. REFERENCE 1 (bases 1 to 1304) AUTHORS Everett,K.D. and Andersen,A.A. TITLE The ribosomal intergenic spacer and domain I of the 23S rRNA gene are phylogenetic markers for Chlamydia spp JOURNAL Int. J. Syst. Bacteriol. 47 (2), 461-473 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1304) AUTHORS Everett,K.D.E. and Andersen,A.A. TITLE Direct Submission JOURNAL Submitted (29-AUG-1996) USDA-ARS-NADC, 2300 Dayton Avenue, Ames, IA 50010, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U68440 BASE COUNT 281 a 150 c 250 g 165 t 3913 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ----aaau|- ----UACAGA CCAAGUUAA- --UAAGAGCU AUUGGUGGAU 121 G|CCUUGG|C AUUGAC|AG| GC-GAAGAAG GA|CGCG(AA UA-CC-)U|- GCG-AAAAGC 181 UCCGGC|-GA GCU(G-GU-G AUA-)AGCAA AG-ACC-CGG AGGUA|UCCG AAUGGG(GAA 241 A)CCC|ggua gag-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uaaua)- gacuacc-AU UG-CAUGCU( 481 GA-AUACA-- UA)GGU-AUG -C-A--AAG- CGACAC|CU- GCCGAACU|G A(AACA)UCU 541 UAGUA-AGCA GAGGAAAAGA AAUC(-gaa- --)GAGAU|U CC-CUGUGUA GC(GGCGA)G 601 CGA-AAG-GG GA-AUA-GCC UAAAccgagc -u-------- -----(gaua a)-------- 661 -----ggcuc gggguuguag gauugagga- ---------- ---------- ---------- 721 ---------- uaaaggauca ggacuccu-a guuGAAcaca u-c(u-ggaa a)g-auggau 781 |g(aua)caG GG(UGAUAGU )CCCGU-Aga c-gaaaggag agaaagacc- ---------- 841 ---------- -gacc-ucaa caccu---GA GUAGGACUAG A(CACGUG-A AA)UCUAGUC 901 UGAAUCU-GG G-GA(GACCA C)UC-UCC-A AGGCUAA--- -AUACUAGUC AAUGACCGAU 961 AGUG-AAC-C AGUACU(GUG A)-AGGA-AA GGCGAAAA-G AACCCU(ugu ua-)AGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAG-UAGCU UACAA-G-CG GUCGGAGACC -aau----gg 1081 ccc-----(- ---guaa--) --------gg guc-aa-GGU UGACGGCGUG CCU(UUU-GC 1141 AU|G)AUGA| -GCCAGGGAG UUAA-GCUA- AACGGC-GAG GUUAAGGGA( uauaca)UUC 1201 C-GGAGCCGG AGC(GAAA-) GCGAGUUU(U AA-AA)GAGC GA-------- ---------- 1261 ---------- ------a-ga G-UCGUUUGG UUUA-GACAC GAAAC-CAA- GUGA-GCUAU 1321 UUAUGAC|CA GGUUGAAGCA UGGG(UAAA) AC-UAUGUGG AGGACCGAAC U-AGUACCU( 1381 -GUUGAAAA) AGGUU|UGG- AUGAG-UUGU GAAUAGGGGU (-GAAAG)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |-~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~-~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.trach.13 4759 bp RNA RNA 18-SEP-1997 DEFINITION Chlamydia trachomatis.; . ACCESSION U68441 KEYWORDS . SOURCE Chlamydia trachomatis. ORGANISM Chlamydia trachomatis. REFERENCE 1 (bases 1 to 1304) AUTHORS Everett,K.D. and Andersen,A.A. TITLE gene are phylogenetic markers for Chlamydia spp The ribosomal intergenic spacer and domain I of the 23S rRNA JOURNAL Int. J. Syst. Bacteriol. 47 (2), 461-473 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1304) AUTHORS Everett,K.D.E. and Andersen,A.A. TITLE Direct Submission JOURNAL Submitted (29-AUG-1996) USDA-ARS-NADC, 2300 Dayton Avenue, Ames, IA 50010, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U68441 BASE COUNT 281 a 151 c 250 g 164 t 3913 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ----aaau|- ----UACAGA CCAAGUUAA- --UAAGAGCU AUUGGUGGAU 121 G|CCUUGG|C AUUGAC|AG| GC-GAAGAAG GA|CGCG(AA UA-CC-)U|- GCG-AAAAGC 181 UCCGGC|-GA GCU(G-GU-G AUA-)AGCAA AG-ACC-CGG AGGUA|UCCG AAUGGG(GAA 241 A)CCC|ggua gag-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uaaua)- gacuacc-AU UG-CAUGCU( 481 GA-AUACA-- UA)GGU-AUG -C-A--AAG- CGACAC|CU- GCCGAACU|G A(AACA)UCU 541 UAGUA-AGCA GAGGAAAAGA AAUC(-gaa- --)GAGAU|U CC-CUGUGUA GC(GGCGA)G 601 CGA-AAG-GG GA-AUA-GCC UAAAccgagc -u-------- -----(gaua a)-------- 661 -----ggcuc gggguuguag gauugagga- ---------- ---------- ---------- 721 ---------- uaaaggauca ggacuccu-a guuGAAcaca u-c(u-ggaa a)g-auggau 781 |g(aua)caG GG(UGAUAGU )CCCGU-Aga c-gaaaggag agaaagacc- ---------- 841 ---------- -gacc-ucaa caccu---GA GUAGGACUAG A(CACGUG-A AA)CCUAGUC 901 UGAAUCU-GG G-GA(GACCA C)UC-UCC-A AGGCUAA--- -AUACUAGUC AAUGACCGAU 961 AGUG-AAC-C AGUACU(GUG A)-AGGA-AA GGCGAAAA-G AACCCU(ugu ua-)AGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAG-UAGCU UACAA-G-CG GUCGGAGACC -aau----gg 1081 ccc-----(- ---guaa--) --------gg guc-aa-GGU UGACGGCGUG CCU(UUU-GC 1141 AU|G)AUGA| -GCCAGGGAG UUAA-GCUA- AACGGC-GAG GUUAAGGGA( uauaca)UUC 1201 C-GGAGCCGG AGC(GAAA-) GCGAGUUU(U AA-AA)GAGC GA-------- ---------- 1261 ---------- ------a-ga G-UCGUUUGG UUUA-GACAC GAAAC-CAA- GUGA-GCUAU 1321 UUAUGAC|CA GGUUGAAGCA UGGG(UAAA) AC-UAUGUGG AGGACCGAAC U-AGUACCU( 1381 -GUUGAAAA) AGGUU|UGG- AUGAG-UUGU GAAUAGGGGU (-GAAAG)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |-~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~-~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.trach.14 4759 bp RNA RNA 18-SEP-1997 DEFINITION Chlamydia trachomatis.; . ACCESSION U68442 KEYWORDS . SOURCE Chlamydia trachomatis. ORGANISM Chlamydia trachomatis. REFERENCE 1 (bases 1 to 1304) AUTHORS Everett,K.D. and Andersen,A.A. TITLE The ribosomal intergenic spacer and domain I of the 23S rRNA gene are phylogenetic markers for Chlamydia spp JOURNAL Int. J. Syst. Bacteriol. 47 (2), 461-473 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1304) AUTHORS Everett,K.D.E. and Andersen,A.A. TITLE Direct Submission JOURNAL Submitted (29-AUG-1996) USDA-ARS-NADC, 2300 Dayton Avenue, Ames, IA 50010, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U68442 BASE COUNT 281 a 151 c 249 g 165 t 3913 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ----aaau|- ----UACAGA CCAAGUUAA- --UAAGAGCU AUUGGUGGAU 121 G|CCUUGG|C AUUGAC|AG| GC-GAAGAAG GA|CGCG(AA UA-CC-)U|- GCG-AAAAGC 181 UCCGGC|-GA GCU(G-GU-G AUA-)AGCAA AG-ACC-CGG AGGUA|UCCG AAUGGG(GAA 241 A)CCC|ggua gag-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uaaua)- gacuacc-AU UG-CAUGCU( 481 GA-AUACA-- UA)GGU-AUG -C-A--AAG- CGACAC|CU- GCCGAACU|G A(AACA)UCU 541 UAGUA-AGCA GAGGAAAAGA AAUC(-gaa- --)GAGAU|U CC-CUGUGUA GC(GGCGA)G 601 CGA-AAG-GG GA-AUA-GCC UAAAccgagc -u-------- -----(gaua a)-------- 661 -----gucuc gggguuguag gauugggga- ---------- ---------- ---------- 721 ---------- uaaaggauca gaacuccu-a guuGAAcaca u-c(u-ggaa a)g-auggau 781 |g(aua)caG GG(UGAUAGU )CCCGU-Aga c-gaaaggag agaaagacc- ---------- 841 ---------- -gacc-ucaa caccu---GA GUAGGACUAG A(CACGUG-A AA)CCUAGUC 901 UGAAUCU-GG G-GA(GACCA C)UC-UCC-A AGGCUAA--- -AUACUAGUC AAUGACCGAU 961 AGUG-AAC-C AGUACU(GUG A)-AGGA-AA GGCGAAAA-G AACCCU(ugu ua-)AGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAG-UAGCU UACAA-G-CG GUCGGAGACC -aau----gg 1081 ccc-----(- ---guaa--) --------gg guc-aa-GGU UGACGGCGUG CCU(UUU-GC 1141 AU|G)AUGA| -GCCAGGGAG UUAA-GCUA- AACGGC-GAG GUUAAGGGA( uauaca)UUC 1201 C-GGAGCCGG AGC(GAAA-) GCGAGUUU(U AA-AA)GAGC GA-------- ---------- 1261 ---------- ------a-ga G-UCGUUUGG UUUA-GACAC GAAAC-CAA- GUGA-GCUAU 1321 UUAUGAC|CA GGUUGAAGCA UGGG(UAAA) AC-UAUGUGG AGGACCGAAC U-AGUACCU( 1381 -GUUGAAAA) AGGUU|UGG- AUGAG-UUGU GAAUAGGGGU (-GAAAG)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |-~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~-~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS Chlamyd.sp 4759 bp RNA RNA 14-AUG-1996 DEFINITION Chlamydia sp.; large subunit ribosomal RNA. ACCESSION Y07555 KEYWORDS large subunit ribosomal RNA. SOURCE Chlamydia sp. ORGANISM Chlamydia sp. REFERENCE 1 (bases 1 to 3029) AUTHORS Mueller,K.D. and Michl,R. Amann,R., Springer,N., Schoenhuber,W., Ludwig,W., Schmid,E.N., TITLE related to Chlamydia Obligate intracellular bacterial parasites of Acanhamoebae JOURNAL Appl. Environ. Microbiol. In press STANDARD No information REFERENCE 2 (bases 1 to 3029) AUTHORS Ludwig,W. TITLE Direct Submission JOURNAL Submitted (13-AUG-1996) W. Ludwig, TU Muenchen, Lehrstuhl fuer Mikrobiologie, D-80290 Muenchen, Germany, FRG STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: Y07555 BASE COUNT 894 a 621 c 843 g 671 t 1730 others ORIGIN 1 ---------- ---------- ---------- ---------- --------ac ucuuauauua 61 aagcuuguuc caauauau|- ----AUUUGG UCAAGCUAU- --UAAGGGCU GCUGGUGGAU 121 G|CCUAGG|C AUCAAU|AG| GC-GAUGAAG GA|CGCG(UU UA-CC-)U|- GCG-AAAAGC 181 UCCGGC|-GA GCU(G-GA-A UAA-)AGCUG CG-ACC-CGG AGAUA|UCCG AAUGGG(GCA 241 A)CCC|aaug gga-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --cuaauc)- ucccauu-AU CU-UUAGCU( 481 GA-AUACA-- UA)GGC-UAU -A-G--AAG- CGAUAC|CU- GCUGAACU|G A(AACA)UCU 541 UAGUA-AGCA GAGGAAAAGA AAUC(-AAUU --)GAGAU|U CC-CUAAGUA GC(GGCGA)G 601 CGA-AAC-GG GA-UGA-GCC CAAAccaaag -uc------- -----(-uuu -)-------- 661 ----gacuuu gggguuguag gaccagcca- ---------- ---------- ---------- 721 ---------- -aaagcuuug gaaauucu-a gucGAAuacu u-c(u-ggaa a)g-uugagc 781 |g(aca)caG GG(UGAUAGC )CCCGU-Aga c-gaaagaau ga-ccaaaca ---------- 841 ---------- --agg-cagg caccu---GA GUAGGGCCGG A(CACGUG-A AA)CCCGGUC 901 UGAAUCU-GG G-GA(GACCA C)UC-UCC-A AGGCUAA--- -AUACUAAUU GAUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G AACCCC(gau ga-)GGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAG-CAGCU UACAA-A-CG GUCGAAGGCC -uau---guc 1081 cuu-----(- ----uuu--) --------aa ggaaau-GGC UAACGGCGUG CCU(UUU-GC 1141 AU|G)AUGA| -GCCAGCGAG UUACUAUUA- AAUGGC-AAG GUUAAGGGA( ca-acg)UUC 1201 U-GGAGCCGA AGC(GAAA-) GCGAGUGU(U AA-AA)GCGC GU-------- ---------- 1261 ---------- ------a-uA G-UCAUUUGA UGUA-GACAC GAAAC-CGA- GUGA-UCUAU 1321 CCAUGAC|CA GGUUGAAGCA AGGG(UAAC) AC-CUUGUGG AGGACCGAAC U-AGUUGCC( 1381 -GUUGAAAA) GGCUU|UGG- AUGAG-UUGU GGAUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 CGGAGAUAUC UUGUUCUCUU CGAAAUAACU (-UUCG)GGU UAGC|-CUCG AACau--aa| 1501 uuau|CUACA G|GGGUAG|A GC-ACUGA-A UUCACGC-GG |-GGGCC(ua cc-)GGCCUA 1561 CCAAAGGAAA -UCAAACUCC GAA-UA-|CU G-U-A-G--- au-----uc| GUU-CGGGAG 1621 AUAGAC--AG U-GGGG(GAU AAG)CUUCAU -UGUC-AAAA GGG(-GAACA G-)CCCAGAU 1681 CGCCGAUUAA G-GC|CCCA- AAUUC-UAUG -C-UAA-GUG ------AGUA AGGAAGUG-G 1741 AGUUUCUAA- AACAGUUGGA AUGUUGGC(U UAGAGGCA)G CCAU-CAU|U (UAA)A|GAG 1801 UGC(GUAACA )GC|UCACCA AU-----CGA GA-AAC-UC- -UGC|GCCGA UAAU-AUC-- 1861 CGGGACU-AA GCAUA-G|A| GCCGAAAUC| GCGG|guuua gcuu---(g- uaa------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- aagcuaagc- GG-UAGGAGA G|-----CGU 2221 A-GUA-UG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-GCAG-C 2341 GAAGAUG-U- A-CC(-GUAA -)GGA--GCG UUGG|AGCGC A-UACUAGUG AUAAUGCAUG 2401 GC|AUA-AGU A--ACGAUAA AGGAGG(UGA AAAU)CCUCC U|CGCC-GAA AAUCCAAGGU 2461 UUCCAG-GGU AAAG-(CUCG U)CU|U-CCC UGGGUUAGC| CGG|U-CCCU AAGCCGAGGC 2521 U(GAAA)-A- GCGU-AGGCG AUGG-CAAGC AGG-(UUAAA UAUU)C-CUG C|GC|ca-c- 2581 cu-aaa-acu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---augauga u------gag u--uga-cga aguacguua- -agc-ac|gc g-gac(ga-- 2761 uugg-a-agu --)gu-ccgu -|-gga---- ---------- ---caua-ug aggc------ 2821 --cggcu-ag uagg(ca-aa -u-)cc|g-- cuagcauaa- ---------- agcc-aggua 2881 ugg-acca|a gg-|------ -----ggagc c(-cucg--) ggugaa---- ------ccga 2941 uagugua--g cgca-acg-| cuuccaagaa auagacuc-u a-auc----- -------g-u 3001 -ugaug--gu g|a|CCGUAC CA-AAACC(G ACACA)GG|U GG-AUGGGA- A-(UAAUA)U 3061 UCUCAGGCGC ||GCGAGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAU 3121 UAUCCCCGUA AC(-UUCG)G GAGAAGGGGA |GCCAC--gg -gguguga-- ------cauu 3181 c(-uucgc)g aaug------ --aagcauc- aa-GUGG-C| C(GCA)GAGA AAUGGCC-CA 3241 GG|CGACU-- ---GU(UUAA CAAAA)ACAC AGCACUAUG| CAAAGUC(gu cu---aa-)G 3301 ACGAAGU-AU AUGGUGUGA- UGCCUGCCCA AU|GCCA-AA A-GGUCAAAA gGAGAAGUUA 3361 GUGC------ (G-CAA)--- ------GUGC GA-AGCUUUG AaUUUAAGCC |CUGGUGAAU 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGUAUAAC GA-UCUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUU |GUAGUAG-C AG(UGAAGAU G)CUGUUUAC CCGCAAU-AA GACGGAAAGA 3601 CCCCGUGA|A CCU-UUACUG U|ACUCUGAU AUU|GGCUUU UGACUUGUCA UGUGUAGGAU 3661 AACCAGGAGA CAUUGAAG-- UCCCCUC(GU CA)GGGGGGA UGGAGUCAAC -G-UUGAAAU 3721 ACUGGU|CUU G-ACAAGCCG GAA-AUCUAA -cgaaau--- -ucca(-uga -auc)-ugga 3781 auucg-GACA UUGUCAGACG GG-CAGUUUU GCUG(GGG)C GGUA|UCCUC C(UAA-AAGG 3841 UAAC)GGAGG A|G|U|CCAA AGCUUGCC|U CAUCGUGG(U UGGUAA)UCA CGAGUC-GA| 3901 GC(G|UAAAG )GUAUAAGGC AAGUUAACUG CGAGAC(CAA CAA)GUCGAG CAGAUAC(GA 3961 AA)GU-AGGG |CUUAGUGAU CCGGCGGUGG AA(AGUGGA) AUC|GCCGUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UUA--UCGCC ACCAAGA(G- UUC-AUA)UC 4081 GACGUGG-CG GU-UUGGCAC CUCGAUGUC| GACU|C|AUC GC|AUCC|UG GGGCU(GGAG 4141 A---A)-GGU CCCAAGGGU| UUGGC(UGUU C)GC-CAAUU AAAGCGGUAC G-CGAGUUGG 4201 GUUCA-AAAC |GUC(GUGA) -GACAGUU-U GGU-CCCUAU -CU|GUUGUG G-G|CG-UAG 4261 GAUACUU|GA -|GAGGAGC- UGC------- -------UUC (UAGUAC(GA GA)GGACC)G 4321 AAGUGG|ACG AACCAAUGGU GUUCCGGU|U GUUCU(GC-C A-)AGAGCA- UCGCCGGGUA 4381 GCU-AUGUUC GGAAAGGAUA AGCGUU(GAA AGCAUCUA)A ACGCCAAGCC CCCCUC|AAG 4441 AUAAGGUAUC C|CU|----- -(------)- -------AU- GAGA|-CU|C CAUG-(UAGA 4501 CC-A)CGUGG -UAGAUAG|G UUGG|GUGUG -UAAGCACA- -(GUAA-)-- UGUGU|UG-A 4561 GCUA|A|CCA AUACUAAUC- AGUCCAUUG| GCUUGA-CCA C-------|c uuuuuuuaag 4621 aaugaagaga ugaagaccau aaagucacuu ggauagaaa~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.pecoru.1 4759 bp RNA RNA 18-SEP-1997 DEFINITION Chlamydia pecorum.; . ACCESSION U68431 KEYWORDS . SOURCE Chlamydia pecorum. ORGANISM Chlamydia pecorum. REFERENCE 1 (bases 1 to 1284) AUTHORS Everett,K.D. and Andersen,A.A. TITLE gene are phylogenetic markers for Chlamydia spp The ribosomal intergenic spacer and domain I of the 23S rRNA JOURNAL Int. J. Syst. Bacteriol. 47 (2), 461-473 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1284) AUTHORS Everett,K.D.E. and Andersen,A.A. TITLE Direct Submission JOURNAL Submitted (29-AUG-1996) USDA-ARS-NADC, 2300 Dayton Avenue, Ames, IA 50010, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U68431 BASE COUNT 277 a 133 c 218 g 214 t 3917 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ----aauu|- ----UACAGA CCAAGUUAG- --UAAGAGCU AUUGGUGGAU 121 G|CCUUGG|C AUUGAA|AG| GC-GAUGAAG GA|UGCG(UU UA-CC-)U|- GCA-UUAAUC 181 UUCGGC|-GA GCU(G-GU-A UAA-)AGCUA UG-ACC-CGG AGGUU|UCCG AAUGGG(AAA 241 A)CCC|gaua gau-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uaaua)- gucuauc-AU UA-UACGCU( 481 GA-AUCCA-- UA)GGC-GUA -U-A--AGG- CGAAAC|CU- ACUGAACU|G A(AACA)UCU 541 UAGUA-AGUA GAGGAAAAGA AAUC(-aaa- --)GAGAU|U CC-CUGUGUA GC(GGCGA)G 601 CGA-AAG-GG GA-ACA-GUC UAAAccauau -u-------- -----(-uuu -)-------- 661 -----aauau gggguuguag ggucgauaa- ---------- ---------- ---------- 721 ---------- cgugagaucu uaaguuuu-a guuGAAuauu u-c(u-ggaa a)g-uugaac 781 |g(aua)caG GG(UGAUAGU )CCCGU-Aaa c-gaaaaaac aa-aagacu- ---------- 841 ---------- --cuauucga uuccu---GA GUAGAACUAG A(CACGUG-A AA)CCUAGUU 901 UGAAUCU-GG G-GA(GACCA C)UC-UCC-A AGACUAA--- -AUACUAAUC AAUGACCUAU 961 AGUG-AAC-C AGUACU(GUA A)-AGGA-AA GGUGAAAA-G AACCCU(ugu ua-)AGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAG-UAGCU UAUAA-G-CG GUCGAAGACC -uau---aac 1081 -uc-----(- ---uucg--) --------ga -gugau-GGU UGACGGCGUG CCU(UUU-GC 1141 AU|G)AUGA| -GCCAGGGAG UUAA-GUUA- AACGGC-GAG GUUAAGGGA( uuuaca)UUC 1201 C-GGAGCCGA AGC(GAAA-) GCGAGUUU(U AA-AA)GAGC GU-------- ---------- 1261 ---------- ------u-ua G-UCGUUUGA UUUA-GACAC GAAAC-CAA- GUGA-UCUAU 1321 UUAUGAC|CA GGUUGAAGCA UUGG(UAAG) AC-UUUGUGG AGGACCGAAC U-AGUACCU( 1381 -GUUGAAAA) AGGUU|UGG- AUGAG-UUGU GAAUAGGG-U (-GAAAG)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |-~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~-~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.pecoru.2 4759 bp RNA RNA 18-SEP-1997 DEFINITION Chlamydia pecorum.; . ACCESSION U68432 KEYWORDS . SOURCE Chlamydia pecorum. ORGANISM Chlamydia pecorum. REFERENCE 1 (bases 1 to 1284) AUTHORS Everett,K.D. and Andersen,A.A. TITLE The ribosomal intergenic spacer and domain I of the 23S rRNA gene are phylogenetic markers for Chlamydia spp JOURNAL Int. J. Syst. Bacteriol. 47 (2), 461-473 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1284) AUTHORS Everett,K.D.E. and Andersen,A.A. TITLE Direct Submission JOURNAL Submitted (29-AUG-1996) USDA-ARS-NADC, 2300 Dayton Avenue, Ames, IA 50010, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U68432 BASE COUNT 275 a 134 c 219 g 214 t 3917 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ----aauu|- ----UACAGA CCAAGUUAG- --UAAGAGCU AUUGGUGGAU 121 G|CCUUGG|C AUUGAA|AG| GC-GAUGAAG GA|UGCG(UU UA-CC-)U|- GCA-UUAAUC 181 UUCGGC|-GA GCU(G-GU-A UAA-)AGCUA UG-ACC-CGG AGGUU|UCCG AAUGGG(AAA 241 A)CCC|gaua gau-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uaaua)- gucuauc-AU UA-UACGCU( 481 GA-AUCCA-- UA)GGC-GUA -U-A--AGG- CGAAAC|CU- ACUGAACU|G A(AACA)UCU 541 UAGUA-AGUA GAGGAAAAGA AAUC(-aaa- --)GAGAU|U CC-CUGUGUA GC(GGCGA)G 601 CGA-AAG-GG GA-ACA-GUC UAAAccauau -u-------- -----(-uuu -)-------- 661 -----aauau gggguuguag ggucgauaa- ---------- ---------- ---------- 721 ---------- cgugagaucu uaaguuuu-a guuGAAuauu u-c(u-ggaa a)g-uugaac 781 |g(aua)caG GG(UGAUAGU )CCCGU-Aaa c-gaaaaaac aa-aagacu- ---------- 841 ---------- --cuauucga uuccu---GA GUAGAACUAG A(CACGUG-A AG)CCUAGUU 901 UGAAUCU-GG G-GA(GACCA C)UC-UCC-A AGACUAA--- -AUACUAAUC AAUGACCUAU 961 AGUG-AAC-C AGUCCU(GUA A)-AGGA-AA GGUGAAAA-G AACCCU(ugu ua-)AGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAG-UAGCU UAUAA-G-CG GUCGAAGACC -uau---aac 1081 -uc-----(- ---uucg--) --------ga -gugau-GGU UGACGGCGUG CCU(UUU-GC 1141 AU|G)AUGA| -GCCAGGGAG UUAA-GUUA- AACGGC-GAG GUUAAGGGA( uuuaca)UUC 1201 C-GGAGCCGA AGC(GAAA-) GCGAGUUU(U AA-AA)GAGC GU-------- ---------- 1261 ---------- ------u-ua G-UCGUUUGA UUUA-GACAC GAAAC-CAA- GUGA-UCUAU 1321 UUAUGAC|CA GGUUGAAGCA UUGG(UAAG) AC-UUUGUGG AGGACCGAAC U-AGUACCU( 1381 -GUUGAAAA) AGGUU|UGG- AUGAG-UUGU GAAUAGGG-U (-GAAAG)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |-~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~-~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.pecoru.3 4759 bp RNA RNA 18-SEP-1997 DEFINITION Chlamydia pecorum.; . ACCESSION U68433 KEYWORDS . SOURCE Chlamydia pecorum. ORGANISM Chlamydia pecorum. REFERENCE 1 (bases 1 to 1284) AUTHORS Everett,K.D. and Andersen,A.A. TITLE The ribosomal intergenic spacer and domain I of the 23S rRNA gene are phylogenetic markers for Chlamydia spp JOURNAL Int. J. Syst. Bacteriol. 47 (2), 461-473 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1284) AUTHORS Everett,K.D.E. and Andersen,A.A. TITLE Direct Submission JOURNAL Submitted (29-AUG-1996) USDA-ARS-NADC, 2300 Dayton Avenue, Ames, IA 50010, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U68433 BASE COUNT 276 a 133 c 219 g 214 t 3917 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ----aauu|- ----UACAGA CCAAGUUAG- --UAAGAGCU AUUGGUGGAU 121 G|CCUUGG|C AUUGAA|AG| GC-GAUGAAG GA|UGCG(UU UA-CC-)U|- GCA-UUAAUC 181 UUCGGC|-GA GCU(G-GU-A UAA-)AGCUA UG-ACC-CGG AGGUU|UCCG AAUGGG(AAA 241 A)CCC|gaua gau-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uaaua)- gucuauc-AU UA-UACGCU( 481 GA-AUCCA-- UA)GGC-GUA -U-A--AGG- CGAAAC|CU- ACUGAACU|G A(AACA)UCU 541 UAGUA-AGUA GAGGAAAAGA AAUC(-aaa- --)GAGAU|U CC-CUGUGUA GC(GGCGA)G 601 CGA-AAG-GG GA-ACA-GUC UAAAccauau -u-------- -----(-uuu -)-------- 661 -----aauau gggguuguag ggucgauaa- ---------- ---------- ---------- 721 ---------- cgugagaucu uaaguuuu-a guuGAAuauu u-c(u-ggaa a)g-uugaac 781 |g(aua)caG GG(UGAUGGU )CCCGU-Aaa c-gaaaaaac aa-aagacu- ---------- 841 ---------- --cuauucga uuccu---GA GUAGAACUAG A(CACGUG-A AA)CCUAGUU 901 UGAAUCU-GG G-GA(GACCA C)UC-UCC-A AGACUAA--- -AUACUAAUC AAUGACCUAU 961 AGUG-AAC-C AGUACU(GUA A)-AGGA-AA GGUGAAAA-G AACCCU(ugu ua-)AGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAG-UAGCU UAUAA-G-CG GUCGAAGACC -uau---aac 1081 -uc-----(- ---uucg--) --------ga -gugau-GGU UGACGGCGUG CCU(UUU-GC 1141 AU|G)AUGA| -GCCAGGGAG UUAA-GUUA- AACGGC-GAG GUUAAGGGA( uuuaca)UUC 1201 C-GGAGCCGA AGC(GAAA-) GCGAGUUU(U AA-AA)GAGC GU-------- ---------- 1261 ---------- ------u-ua G-UCGUUUGA UUUA-GACAC GAAAC-CAA- GUGA-UCUAU 1321 UUAUGAC|CA GGUUGAAGCA UUGG(UAAG) AC-UUUGUGG AGGACCGAAC U-AGUACCU( 1381 -GUUGAAAA) AGGUU|UGG- AUGAG-UUGU GAAUAGGG-U (-GAAAG)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |-~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~-~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.pecoru.4 4759 bp RNA RNA 18-SEP-1997 DEFINITION Chlamydia pecorum.; . ACCESSION U68434 KEYWORDS . SOURCE Chlamydia pecorum. ORGANISM Chlamydia pecorum. REFERENCE 1 (bases 1 to 1284) AUTHORS Everett,K.D. and Andersen,A.A. TITLE The ribosomal intergenic spacer and domain I of the 23S rRNA gene are phylogenetic markers for Chlamydia spp JOURNAL Int. J. Syst. Bacteriol. 47 (2), 461-473 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1284) AUTHORS Everett,K.D.E. and Andersen,A.A. TITLE Direct Submission JOURNAL Submitted (29-AUG-1996) USDA-ARS-NADC, 2300 Dayton Avenue, Ames, IA 50010, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U68434 BASE COUNT 277 a 133 c 218 g 214 t 3917 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ----aauu|- ----UACAGA CCAAGUUAG- --UAAGAGCU AUUGGUGGAU 121 G|CCUUGG|C AUUGAA|AG| GC-GAUGAAG GA|UGCG(UU UA-CC-)U|- GCA-UUAAUC 181 UUCGGC|-GA GCU(G-GU-A UAA-)AGCUA UG-ACC-CGG AGGUU|UCCG AAUGGG(AAA 241 A)CCC|gaua gau-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uaaua)- gucuauc-AU UA-UACGCU( 481 GA-AUCCA-- UA)GGC-GUA -U-A--AGG- CGAAAC|CU- ACUGAACU|G A(AACA)UCU 541 UAGUA-AGUA GAGGAAAAGA AAUC(-aaa- --)GAGAU|U CC-CUGUGUA GC(GGCGA)G 601 CGA-AAG-GG GA-ACA-GUC UAAAccauau -u-------- -----(-uuu -)-------- 661 -----aauau gggguuguag ggucgauaa- ---------- ---------- ---------- 721 ---------- cgugagaucu uaaguuuu-a guuGAAuauu u-c(u-ggaa a)g-uugaac 781 |g(aua)caG GG(UGAUAGU )CCCGU-Aaa c-gaaaaaac aa-aagacu- ---------- 841 ---------- --cuauucga uuccu---GA GUAGAACUAG A(CACGUG-A AA)CCUAGUU 901 UGAAUCU-GG G-GA(GACCA C)UC-UCC-A AGACUAA--- -AUACUAAUC AAUGACCUAU 961 AGUG-AAC-C AGUACU(GUA A)-AGGA-AA GGUGAAAA-G AACCCU(ugu ua-)AGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAG-UAGCU UAUAA-G-CG GUCGAAGACC -uau---aac 1081 -uc-----(- ---uucg--) --------ga -gugau-GGU UGACGGCGUG CCU(UUU-GC 1141 AU|G)AUGA| -GCCAGGGAG UUAA-GUUA- AACGGC-GAG GUUAAGGGA( uuuaca)UUC 1201 C-GGAGCCGA AGC(GAAA-) GCGAGUUU(U AA-AA)GAGC GU-------- ---------- 1261 ---------- ------u-ua G-UCGUUUGA UUUA-GACAC GAAAC-CAA- GUGA-UCUAU 1321 UUAUGAC|CA GGUUGAAGCA UUGG(UAAG) AC-UUUGUGG AGGACCGAAC U-AGUACCU( 1381 -GUUGAAAA) AGGUU|UGG- AUGAG-UUGU GAAUAGGG-U (-GAAAG)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |-~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~-~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.pecoru.5 4759 bp RNA RNA 18-SEP-1997 DEFINITION Chlamydia pecorum.; . ACCESSION U68435 KEYWORDS . SOURCE Chlamydia pecorum. ORGANISM Chlamydia pecorum. REFERENCE 1 (bases 1 to 1284) AUTHORS Everett,K.D. and Andersen,A.A. TITLE The ribosomal intergenic spacer and domain I of the 23S rRNA gene are phylogenetic markers for Chlamydia spp JOURNAL Int. J. Syst. Bacteriol. 47 (2), 461-473 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1284) AUTHORS Everett,K.D.E. and Andersen,A.A. TITLE Direct Submission JOURNAL Submitted (29-AUG-1996) USDA-ARS-NADC, 2300 Dayton Avenue, Ames, IA 50010, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U68435 BASE COUNT 277 a 133 c 218 g 214 t 3917 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ----aauu|- ----UACAGA CCAAGUUAG- --UAAGAGCU AUUGGUGGAU 121 G|CCUUGG|C AUUGAA|AG| GC-GAUGAAG GA|UGCG(UU UA-CC-)U|- GCA-UUAAUC 181 UUCGGC|-GA GCU(G-GU-A UAA-)AGCUA UG-ACC-CGG AGGUU|UCCG AAUGGG(AAA 241 A)CCC|gaua gau-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uaaua)- gucuauc-AU UA-UACGCU( 481 GA-AUCCA-- UA)GGC-GUA -U-A--AGG- CGAAAC|CU- ACUGAACU|G A(AACA)UCU 541 UAGUA-AGUA GAGGAAAAGA AAUC(-aaa- --)GAGAU|U CC-CUGUGUA GC(GGCGA)G 601 CGA-AAG-GG GA-ACA-GUC UAAAccauau -u-------- -----(-uuu -)-------- 661 -----aauau gggguuguag ggucgauaa- ---------- ---------- ---------- 721 ---------- cgugagaucu uaaguuuu-a guuGAAuauu u-c(u-ggaa a)g-uugaac 781 |g(aua)caG GG(UGAUAGU )CCCGU-Aaa c-gaaaaaac aa-aagacu- ---------- 841 ---------- --cuauucga uuccu---GA GUAGAACUAG A(CACGUG-A AA)CCUAGUU 901 UGAAUCU-GG G-GA(GACCA C)UC-UCC-A AGACUAA--- -AUACUAAUC AAUGACCUAU 961 AGUG-AAC-C AGUACU(GUA A)-AGGA-AA GGUGAAAA-G AACCCU(ugu ua-)AGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAG-UAGCU UAUAA-G-CG GUCGAAGACC -uau---aac 1081 -uc-----(- ---uucg--) --------ga -gugau-GGU UGACGGCGUG CCU(UUU-GC 1141 AU|G)AUGA| -GCCAGGGAG UUAA-GUUA- AACGGC-GAG GUUAAGGGA( uuuaca)UUC 1201 C-GGAGCCGA AGC(GAAA-) GCGAGUUU(U AA-AA)GAGC GU-------- ---------- 1261 ---------- ------u-ua G-UCGUUUGA UUUA-GACAC GAAAC-CAA- GUGA-UCUAU 1321 UUAUGAC|CA GGUUGAAGCA UUGG(UAAG) AC-UUUGUGG AGGACCGAAC U-AGUACCU( 1381 -GUUGAAAA) AGGUU|UGG- AUGAG-UUGU GAAUAGGG-U (-GAAAG)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |-~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~-~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.pecoru.6 4759 bp RNA RNA 18-SEP-1997 DEFINITION Chlamydia pecorum.; . ACCESSION U68439 KEYWORDS . SOURCE Chlamydia pecorum. ORGANISM Chlamydia pecorum. REFERENCE 1 (bases 1 to 1284) AUTHORS Everett,K.D. and Andersen,A.A. TITLE The ribosomal intergenic spacer and domain I of the 23S rRNA gene are phylogenetic markers for Chlamydia spp JOURNAL Int. J. Syst. Bacteriol. 47 (2), 461-473 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1284) AUTHORS Everett,K.D.E. and Andersen,A.A. TITLE Direct Submission JOURNAL Submitted (29-AUG-1996) USDA-ARS-NADC, 2300 Dayton Avenue, Ames, IA 50010, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U68439 BASE COUNT 277 a 133 c 218 g 214 t 3917 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ----aauu|- ----UACAGA CCAAGUUAG- --UAAGAGCU AUUGGUGGAU 121 G|CCUUGG|C AUUGAA|AG| GC-GAUGAAG GA|UGCG(UU UA-CC-)U|- GCA-UUAAUC 181 UUCGGC|-GA GCU(G-GU-A UAA-)AGCUA UG-ACC-CGG AGGUU|UCCG AAUGGG(AAA 241 A)CCC|gaua gau-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uaaua)- gucuauc-AU UA-UACGCU( 481 GA-AUCCA-- UA)GGC-GUA -U-A--AGG- CGAAAC|CU- ACUGAACU|G A(AACA)UCU 541 UAGUA-AGUA GAGGAAAAGA AAUC(-aaa- --)GAGAU|U CC-CUGUGUA GC(GGCGA)G 601 CGA-AAG-GG GA-ACA-GUC UAAAccauau -u-------- -----(-uuu -)-------- 661 -----aauau gggguuguag ggucgauaa- ---------- ---------- ---------- 721 ---------- cgugagaucu uaaguuuu-a guuGAAuauu u-c(u-ggaa a)g-uugaac 781 |g(aua)caG GG(UGAUAGU )CCCGU-Aaa c-gaaaaaac aa-aagacu- ---------- 841 ---------- --cuauucga uuccu---GA GUAGAACUAG A(CACGUG-A AA)CCUAGUU 901 UGAAUCU-GG G-GA(GACCA C)UC-UCC-A AGACUAA--- -AUACUAAUC AAUGACCUAU 961 AGUG-AAC-C AGUACU(GUA A)-AGGA-AA GGUGAAAA-G AACCCU(ugu ua-)AGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAG-UAGCU UAUAA-G-CG GUCGAAGACC -uau---aac 1081 -uc-----(- ---uucg--) --------ga -gugau-GGU UGACGGCGUG CCU(UUU-GC 1141 AU|G)AUGA| -GCCAGGGAG UUAA-GUUA- AACGGC-GAG GUUAAGGGA( uuuaca)UUC 1201 C-GGAGCCGA AGC(GAAA-) GCGAGUUU(U AA-AA)GAGC GU-------- ---------- 1261 ---------- ------u-ua G-UCGUUUGA UUUA-GACAC GAAAC-CAA- GUGA-UCUAU 1321 UUAUGAC|CA GGUUGAAGCA UUGG(UAAG) AC-UUUGUGG AGGACCGAAC U-AGUACCU( 1381 -GUUGAAAA) AGGUU|UGG- AUGAG-UUGU GAAUAGGG-U (-GAAAG)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |-~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~-~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.psitt.01 4759 bp RNA RNA 29-JAN-1997 DEFINITION Chlamydia psittaci NJ1. ACCESSION No information KEYWORDS No information. SOURCE Chlamydia psittaci NJ1. ORGANISM Chlamydia psittaci NJ1. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U68419 BASE COUNT 924 a 577 c 826 g 750 t 1682 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- ----UACAGA CCAAGUUAU- --UAAGAGCU AUUGGUGGAU 121 G|CCUUGG|C AUUGAC|AG| GC-GAUGAAG GA|UGCG(UU UA-CC-)U|- GCA-GUAAUC 181 UUCGGC|-GA GCU(G-GU-A UAA-)AGCUA UG-ACC-CGG AGGUC|UCCG AAUGGG(GCA 241 A)CCC|ggua gau-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uaauc)- aucuauc-AU UA-UACGUU( 481 GA-AUACA-- UA)GGC-GUA -U-A--AGG- CGACAC|CU- GCUGAACU|G A(AACA)UCU 541 UAGUA-AGCA GAGGAAAAUA AAUC(-aaa- --)GAGAU|U CC-CUAAGUA GC(GGCGA)G 601 CGA-AAG-GG GA-GAA-GAC CAAAccgcau -u-------- -----(-uuu -)-------- 661 -----aaugu gggguuguag ggucgauaa- ---------- ---------- ---------- 721 ---------- caugggaucu uaaguuuu-a guuGAAuacu u-c(u-ggaa a)g-uagaac 781 |g(aua)caG GG(UGAUAGU )CCCGU-Aga c-gaaaaaac aa-gagacu- ---------- 841 ---------- --cuauucga uaccu---GA GUAGGGCUAG A(CACGUG-A AA)CCUAGUC 901 UGAAUCU-GG G-GA(GACCA C)UC-UCC-A AGUCUAA--- -AUACUAGUC AAUGACCUAU 961 AGUG-AAC-C AGUACU(GUG A)-AGGA-AA GGUGAAAA-G AACCCU(ugu ua-)AGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAG-UAGCU UAUAA-G-CG GUCGAAGACC -uau---aac 1081 uuc-----(- ---uuag--) --------ga agucau-GGU UGACGGCGUG CCU(UUU-GC 1141 AU|G)AUGA| -GCCAGGGAG UUAA-GUUA- AACGGC-GAG GUUAAGGGA( ucuaca)UUC 1201 C-GGAGCCGA AGC(GAAA-) GCGAGUUU(U AA-AA)GAGC GU-------- ---------- 1261 ---------- ------u-ua G-UCGUUUGA UUUA-GACAC GAAAC-CAA- GUGA-GCUAU 1321 UUAUGAC|CA GGUUGAAGCA UGGG(UAAG) AC-CUUGUGG AGGACCGAAC C-AGUACAU( 1381 -GUUGAAAA) AUGUU|UGG- AUGAG-UUGU GAAUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 UGGAGAUAUC UUGUUCUCUC CGAAAUAACU (-UUAG)GGU UAGC|-CUCG GAUa---uu| 1501 aagc|UUUUG G|GGGUAG|A GC-ACUGA-A UUCUAGC-GG |-GGGCC(ua cc-)GGCUUA 1561 CCAAAGGAAA -UCAAACUCC GAA-UA-|CC A-A-A-A--- gu-----ga| GUC-CGGGAG 1621 AUAGAC--AG C-GGGG(GCU AAG)CUUCGU -UGUC-GAGA GGG(-GAACA G-)CCCAGAC 1681 CGCCGAUUAA G-GU|CCCA- AAUUU-UAUG -C-UAA-GUG ------AGUA AGGAAGUG-A 1741 UGAUUCUAA- GACAGUUGGA AUGUUGGC(U UAGAGGCA)G CAAU-CAU|U (UAA)A|GAG 1801 UGC(GUAACA )GC|UCACCA AU-----CGA GA-AUC-AU- -UGC|GCCAA UAAU-AAU-- 1861 CGGGGCUcAA GCAUA-A|A| ACCGAAAUC| GCGG|gugua uau----(uu au-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -auauacgc- GG-UAGGAGA G|-----CGU 2221 A-GUA-UUC- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --A-GCAG-U 2341 GAAGGUA-U- A-CC(-GUAA -)GGA--GUG CUGG|AGCGG A-UACUAGUG AAGAUCCAUG 2401 GC|AUA-AGU A--ACGAUAA AGGAAG(UGA AAAU)CUUCC U|CGCC-GUA AGCACAAGGU 2461 UUCCAG-GGU CAAG-(CUCG U)CU|U-CCC UGGGUUAGU| CGG|C-CCCU AAGUCGAGGC 2521 A(CAAA)-U- GCGU-AGACG AUGGAGCAAC AGG-(UUAAA UAUU)C-CUG U|AC|ca-c- 2581 cu-aaa-acu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---uuagcaa u------gga a--uga-cgg aguacguua- -agc-ac|gc g-gac(ga-- 2761 uugg-a-aau --)gu-ccgu -|auc----- ---------- ---acaa-ug agac------ 2821 --cgguu-ag uagg(ca-aa -u-)cc|g-- cuaacauaa- ---------- gguu-agguu 2881 gug-guua|a gg-|------ -----gaaau c(-uucg--) gaggaa---- ------cuga 2941 uagugug--g cgca-agg-| cuuucaagaa auaauuuc-u a-gcu----- -------g-u 3001 -ugaug--gu g|a|CCGUAC CU-AAACC(G ACACA)GG|U GU-GCGAGA- U-(GAGUA)U 3061 UCUAAGGCGC ||GCGAGAUA ACUUUCGUU- ---------- ----AAGGAA CUCGGCAAAU 3121 UAUCCCCGUA AC(-UUCG)G AAGAAGGGGA |GCCUC--uu -agggugau- -------ugc 3181 c(-uuuac)g gcaug----- --a-gcucc- gg-GGGG-C| C(GCA)GAGA AAUGGCC-CA 3241 GG|CGACU-- ---GU(UUAA CAAAA)ACAC AGCACUAUG| CAAACCU(cu aa------)- 3301 GGGAAGU-AU AUGGUGUGA- CGCCUGCCCA AU|GCCA-AA A-GGUUAAAG GGAUAUGUCA 3361 GCC------- (G-CAA)--- -------GGC AA-AGCAUUG AACCCAAGCC |CUGGUGAAU 3421 |-GGC|CGCC GU(AACUAUA )ACGGUG|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGUGUAAC GA-UCUGGGC ACUGUCUCAA CGAAAGACUC 3541 G|GUGAAAUU |GUAGUAG-C AG(UGAAGAU G)CUGUUUAC CCGCAAA-AG GACGAAAAGA 3601 CCCCGUGA|A CCU-UUACUG U|ACUUUGGU AUU|GAUUCU UGAUUUGUUA UGUGUAGCAU 3661 AGCCAGGAGA CUGAGAAC-- ACUCUUC(GU CA)GGAGAGU GGGAGUCAUC -G-UUGAAAU 3721 ACUGGU|CUU A-ACAAGUUG GGA-AUCUAA -cauaau--- -ucca(-uga -auc)-ugga 3781 auaug-GACA UUGCCAGACG GG-CAGUUUU ACUG(GGG)C GGUA|UCCUC C(UAA-AAAG 3841 UAAC)GGAGG A|G|C|CCAA AGCUUAUU|U CAUCGUGG(U UGGCAA)UCA CGAGUA-GA| 3901 GC(G|UAAAG )GUAUAAAAU AGGUUGACUG CAAGAC(CUA CAA)GUCAAG CAGAGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGCGGUGG AA(AGUGGA) AUC|GCCGUC GCUUAAC|GG 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UGA--UCGCC ACCAAGA(G- UUC-AUA)UC 4081 GACGUGG-CG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GGAG 4141 A---A)-GGU CCCAAGGGU| UUGGC(UGUU C)GC-CAAUU AAAGCGGUAC G-CGAGcUGG 4201 GUUCA-AAAC |GUC(GUGA) -GACAGUU-U GGU-CUCUAU -CC|UUUGUG G-G|CG-CAG 4261 GAUACUU|GA -|AAGGAGC- UGU------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAAUGG|ACG AACCAAUGGU GUUUCGGU|U GUUUU(GC-C A-)AAAGCA- UAGCCGAGUA 4381 GCU-ACGUUC GGAAAGGAUA AGCAUU(GAA AGCAUCUA)A AUGCCAAGCC UCCCUU|AAG 4441 AUAAGGUAUC C|CU|----- -(------)- -------AU- GAGA|-CU|C CAUA-(UAGA 4501 CU-A)UGUGG -UUGAUAG|G UUGG|GUGUG -UACGCACA- -(GUAA-)-- UGUGU|UU-A 4561 GCUA|A|CCA AUACUAAUA- AGUCCAUUG| ACUUGG-UUU U-------|u aucauauaaa 4621 aagcucaaua ggcuuuuuua uugaaauaaa ucgaucaaug uaaguugaua cuaaagacuc 4681 ucuuaagcgu cuauuaguau acgugaaugu uacguuacaa gaauuugcuu ggugauaaug 4741 gaaa~~~~~~ ~~~|||||| // LOCUS C.psitt.02 4759 bp RNA RNA 29-JAN-1997 DEFINITION Chlamydia psittaci 6BC. ACCESSION No information KEYWORDS No information. SOURCE Chlamydia psittaci 6BC. ORGANISM Chlamydia psittaci 6BC. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U68447 BASE COUNT 922 a 579 c 829 g 750 t 1679 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- ----UACAGA CCAAGUUAU- --UAAGAGCU AUUGGUGGAU 121 G|CCUUGG|C AUUGAC|AG| GC-GAUGAAG GA|UGCG(UU UA-CC-)U|- GCA-GUAAUC 181 UUCGGC|-GA GCU(G-GU-A UAA-)AGCUA UG-ACC-CGG AGGUC|UCCG AAUGGG(GCA 241 A)CCC|ggua gau-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uaauc)- aucuacc-AU UA-UACGUU( 481 GA-AUACA-- UA)GGC-GUA -U-A--AGG- CGACAC|CU- GCUGAACU|G A(AACA)UCU 541 UAGUA-AGCA GAGGAAAAUA AAUC(-aaa- --)GAGAU|U CC-CUAAGUA GC(GGCGA)G 601 CGA-AAG-GG GA-GAA-GAC CAAAccacau -u-------- -----(-uuu -)-------- 661 -----aaugu gggguuguag ggucgauaa- ---------- ---------- ---------- 721 ---------- caugggaucu uaaguuuu-a guuGAAuacu u-c(u-ggaa a)g-uagaac 781 |g(aua)caG GG(UGAUAGU )CCCGU-Aga c-gaaaaaac aa-gagacu- ---------- 841 ---------- --cuauucga uaccu---GA GUAGGGCUAG A(CACGUG-A AA)CCUAGUC 901 UGAAUCU-GG G-GA(GACCA C)UC-UCC-A AGUCUAA--- -AUACUAGUC AAUGACCUAU 961 AGUG-AAC-C AGUACU(GUG A)-AGGA-AA GGUGAAAA-G AACCCU(ugu ua-)AGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAG-UAGCU UAUAA-G-CG GUCGAAGACC -uau---aac 1081 uuc-----(- ---uuag--) --------ga agucau-GGU UGACGGCGUG CCU(UUU-GC 1141 AU|G)AUGA| -GCCAGGGAG UUAA-GUUA- AACGGC-GAG GUUAAGGGA( uuuaca)UUC 1201 C-GGAGCCGA AGC(GAAA-) GCGAGUUU(U AA-AA)GAGC GU-------- ---------- 1261 ---------- ------u-ua G-UCGUUUGA UUUA-GACAC GAAAC-CAA- GUGA-GCUAU 1321 UUAUGAC|CA GGUUGAAGCA UGGG(UAAG) AC-CUUGUGG AGGACCGAAC C-AGUACAU( 1381 -GUUGAAAA) AUGUU|UGG- AUGAG-UUGU GAAUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 UGGAGAUAUC UUGUUCUCUC CGAAAUAACU (-UUAG)GGU UAGC|-CUCG GAUa---uu| 1501 aagc|UUUUG G|GGGUAG|A GC-ACUGA-A UUCUAGC-GG |-GGGCC(ua cc-)GGCUUA 1561 CCAACGGAAA -UCAAACUCC GAA-UA-|CC A-A-A-A--- gc-----ga| GUC-CGGGAG 1621 AUAGAC--AG C-GGGG(GCU AAG)CUUCGU -UGUC-GAGA GGG(-GAACA G-)CCCAGAC 1681 CGCCGAUUAA G-GU|CCCA- AAUUU-UAUG -C-UAA-GUG ------AGUA AGGAAGUG-A 1741 UGAUUCUAA- GACAGUUGGA AUGUUGGC(U UAGAGGCA)G CAAU-CAU|U (UAA)A|GAG 1801 UGC(GUAACA )GC|UCACCA AU-----CGA GA-AUC-AU- -UGC|GCCAA UAAU-AAU-- 1861 CGGGGCUcAA GCAUA-A|A| ACCGAAAUC| GCGG|gugua uau----(uu au-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -auauacgc- GG-UAGGAGA G|-----CGU 2221 A-GUA-UUC- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --A-GCAG-U 2341 GAAGGUA-U- A-CC(-GUAA -)GGA--GUG CUGG|AGCGG A-UACUAGUG AAGAUCCAUG 2401 GC|AUA-AGU A--ACGAUUA AGGAAG(UGA AAAU)CUUCC U|CGCC-GUA AGCACAAGGU 2461 UUCCAG-GGU CAAG-(CUCG U)CU|U-CCC UGGGUUAGU| CGG|C-CCCU AAGUCGAGGC 2521 A(CAAA)-U- GCGU-AGACG AUGGAGCAAC AGG-(UUAAA UAUU)C-CUG U|AC|ca-c- 2581 cu-aaa-acu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---uuagcaa u------gga a--uga-cgg aguacguu-- -agc-ac|gc g-gac(ga-- 2761 uugg-a-aau --)gu-ccgu -|auc----- ---------- ---acaa-ug agac------ 2821 --cgguu-ag uagg(ca-aa -u-)cc|g-- cuaacauaa- ---------- gguu-agguu 2881 gug-guua|a gg-|------ -----gaaau c(-uucg--) gaggaa---- ------cuga 2941 uagugug--g cgca-agg-| cuuucaagaa auaauuuc-u a-gcu----- -------g-u 3001 -ugaug--gu g|a|CCGUAC CU-AAACC(G ACACA)GG|U GU-GCGAGA- U-(GCGUA)U 3061 UCUAAGGCGG ||GCGAGAUA ACUUUCGUU- ---------- ----AAGUAA CUCGGCAAAU 3121 UAUCCCCGUA AC(-UUCG)G AAGAAGGGGA |GCCUC--uu -agggugau- -------ugc 3181 c(-uuuac)g gcaug----- --a-gcucc- gg-GGGG-C| C(GCA)GAGA AAUGGCC-CA 3241 GG|CGACU-- ---GU(UUAA CAAAA)ACAC AGCACUAUG| CAAACCU(cu aa------)G 3301 GGGAAGU-AU AUGGUGUGA- CGCCUGCCCA AU|GCCA-AA A-GGUUAAAG GGAUAUGUCA 3361 GCC------- (G-CAA)--- -------GGC AA-AGCAUUG AACCCAAGCC |CUGGUGAAU 3421 |-GGC|CGCC GU(AACUAUA )ACGGUG|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGUGUAAC GA-UCUGGGC ACUGUCUCAA CGAAAGACUC 3541 G|GUGAAAUU |GUAGUAG-C AG(UGAAGAU G)CUGUUUAC CCGCAAA-AG GACGAAAAGA 3601 CCCCGUGA|A CCU-UUACUG U|ACUUUGGU AUU|GAUUCU UGAUUUGUUA UGUGUAGCAU 3661 AGCCAGGAGA CUGAGAAC-- ACUCUUC(GU CA)GGAGAGU GGGAGUCAUC -G-UUGAAAU 3721 ACUGGU|CUU A-ACAAGUUG GGA-AUCUAA -cauaau--- -ucca(-uga -auc)-ugga 3781 auaug-GACA UUGCCAGACG GG-CAGUUUU ACUG(GGG)C GGUA|UCCUC C(UAA-AAAG 3841 UAAC)GGAGG A|G|C|CCAA AGCUUAUU|U CAUCGUGG(U UGGCAA)UCA CGAGUA-GA| 3901 GC(G|UAAAG )GUAUAAAAU AGGUUGACUG CAAGAC(CUA CAA)GUCAAG CAGAGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGCGGUGG AA(AGUGGA) AUC|GCCGUC GCUUAAC|GG 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UGA--UCGCC ACCAAGA(G- UUC-AUA)UC 4081 GACGUGG-CG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GGAG 4141 A---A)-GGU CCCAAGGGU| UUGGC(UGUU C)GC-CAAUU AAAGCGGUAC G-CGAGcUGG 4201 GUUCA-AAAC |GUC(GUGA) -GACAGUU-U GGU-CUCUAU -CC|UUUGUG G-G|CG-CAG 4261 GAUACUU|GA -|AAGGAGC- UGU------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAAUGG|ACG AACCAAUGGU GUGUCGGU|U GUUUU(GC-C A-)AAAGCA- UAGCCGAGUA 4381 GCU-ACGUUC GGAAAGGAUA AGCAUU(GAA AGCAUCUA)A AUGCCAAGCC UCCCUU|AAG 4441 AUAAGGUAUC C|CU|----- -(------)- -------AU- GAGA|-CU|C CAUA-(UAGA 4501 CU-A)UGUGG -UUGAUAG|G UUGG|GUGUG -UACGCACA- -(GUAA-)-- UGUGU|UU-A 4561 GCUA|A|CCA AUACUAAUA- AGUCCAUUG| ACUUGG-UUU U-------|u aucauauaaa 4621 aagcucaaua ggcuuuuuug uugaaauaaa ucgaucaaug uaaguugaua cuaaagacuc 4681 ucuuaagcgu cuauuaguau acgugaaugu uacguuacaa gaauuugcuu ggugauaaug 4741 aaaaagg~~~ ~~~|||||| // LOCUS C.psitt.03 4759 bp RNA RNA 18-SEP-1997 DEFINITION Chlamydia psittaci.; . ACCESSION U68450 KEYWORDS . SOURCE Chlamydia psittaci. ORGANISM Chlamydia psittaci. REFERENCE 1 (bases 1 to 1284) AUTHORS Everett,K.D. and Andersen,A.A. TITLE gene are phylogenetic markers for Chlamydia spp The ribosomal intergenic spacer and domain I of the 23S rRNA JOURNAL Int. J. Syst. Bacteriol. 47 (2), 461-473 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1284) AUTHORS Everett,K.D.E. and Andersen,A.A. TITLE Direct Submission JOURNAL Submitted (29-AUG-1996) USDA-ARS-NADC, 2300 Dayton Avenue, Ames, IA 50010, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U68450 BASE COUNT 272 a 143 c 227 g 203 t 3914 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ----aauu|- ----UACAGA CCAAGUUAU- --UAAGAGCU AUUGGUGGAU 121 G|CCUUGG|C AUUGAC|AG| GC-GAUGAAG GA|UGCG(UU UA-CC-)U|- GCA-GUAAUC 181 UUCGGC|-GA GCU(G-GU-A UAA-)AGCUA UG-ACC-CGG AGGUC|UCCG AAUGGG(GCA 241 A)CCC|ggua gau-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uaauc)- aucuacc-AU UA-UACGUU( 481 GA-AUACA-- UA)GAC-GUA -U-A--AGG- CGACAC|CU- GCUGAACU|G A(AACA)UCU 541 UAGUA-AGCA GAGGAAAAUA AAUC(-aaa- --)GAGAU|U CC-CUGAGUA GC(GGCGA)G 601 CGA-AAG-GG GA-GAA-GAC CAAAccacau -u-------- -----(-uuu -)-------- 661 -----aaugu gggguuguag ggucgauaa- ---------- ---------- ---------- 721 ---------- caugggaucu uaaguuuu-a guuGAAuacu u-c(u-ggaa a)g-uagaac 781 |g(aua)caG GG(UGAUAGU )CCCGU-Aga c-gaaaaaac aa-gagacu- ---------- 841 ---------- --cuauucga uaccu---GA GUAGGGCUAG A(CACGUG-A AA)CCUAGUC 901 UGAAUCU-GG G-GA(GACCA C)UC-UCC-A AGUCUAA--- -AUACUAGUC AAUGACCUAU 961 AGUG-AAC-C AGUACU(GUG A)-AGGA-AA GGUGAAAA-G AACCCU(ugu ua-)AGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAG-UAGCU UAUAA-G-CG GUCGAAGACC -uau---aac 1081 uuc-----(- ---uuag--) --------ga agucau-GGU UGACGGCGUG CCU(UUU-GC 1141 AU|G)AUGA| -GCCAGGGAG UUAA-GUUA- AACGGC-GAG GUUAAGGGA( ucuaca)UUC 1201 C-GGAGCCGA AGC(GAAA-) GCGAGUUU(U AA-AA)GAGC GU-------- ---------- 1261 ---------- ------u-ua G-UCGUUUGA UUUA-GACAC GAAAC-CAA- GUGA-GCUAU 1321 UUAUGAC|CA GGUUGAAGCA UGGG(UAAG) AC-CUUGUGG AGGACCGAAC C-AGUACAU( 1381 -GUUGAAAA) AUGUU|UGG- AUGAG-UUGU GAAUAGGGGU (-GAAAG)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |-~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~-~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.psitt.04 4759 bp RNA RNA 18-SEP-1997 DEFINITION Chlamydia psittaci.; . ACCESSION U68451 KEYWORDS . SOURCE Chlamydia psittaci. ORGANISM Chlamydia psittaci. REFERENCE 1 (bases 1 to 1284) AUTHORS Everett,K.D. and Andersen,A.A. TITLE The ribosomal intergenic spacer and domain I of the 23S rRNA gene are phylogenetic markers for Chlamydia spp JOURNAL Int. J. Syst. Bacteriol. 47 (2), 461-473 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1284) AUTHORS Everett,K.D.E. and Andersen,A.A. TITLE Direct Submission JOURNAL Submitted (29-AUG-1996) USDA-ARS-NADC, 2300 Dayton Avenue, Ames, IA 50010, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U68451 BASE COUNT 268 a 146 c 231 g 200 t 3914 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ----aauu|- ----UACAGA CCAAGUUGU- --UAAGAGCU AUUGGCGGAU 121 G|CCUUGG|C AUUGAC|AG| GC-GAUGAAG GA|UGCG(UU UA-CC-)U|- GCA-GUAAUC 181 UUCGGC|-GA GCU(G-GU-A UAA-)AGCUA UG-ACC-CGG AGGUA|UCCG AAUGGG(GUA 241 A)CCC|ggua gau-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uaauc)- gucuacc-AU UA-UAUACU( 481 GA-AUACA-- UA)GGU-AUA -U-A--AAG- CGACAC|CU- GCUGAACU|G A(AACA)UCU 541 UAGUA-AGCA GAGGAAAAUA AAUC(-aaa- --)GAGAU|U CC-CUAAGUA GC(GGCGA)G 601 CGA-AAG-GG GA-GAA-GAC CAAAccacgc -c-------- -----(-uuu -)-------- 661 -----ggugu gggguuguag ggucgauaa- ---------- ---------- ---------- 721 ---------- caugagaucu uaaguuuu-a guuGAAuacu u-c(u-ggaa a)g-uagaac 781 |g(aua)caG GG(UGAUAGU )CCCGU-Aaa c-gaaagaac aa-gagacu- ---------- 841 ---------- --cuauucga ugccu---GA GUAGGGCUAG A(CACGUG-A AA)CCUAGUC 901 UGAAUCU-GG G-GA(GACCA C)UC-UCC-A AGUCUAA--- -AUACUAGUC AAUGACCUAU 961 AGUG-AAC-C AGUACU(GUG A)-AGGA-AA GGUGAAAA-G AACCCU(ugu ua-)AGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAG-UAGCU UAUAA-G-CG GUCGGAGACC -uau---agc 1081 uuc-----(- ---cucg--) --------ga agccau-GGU UGACGGCGUG CCU(UUU-GC 1141 AU|G)AUGA| -GCCAGGGAG UUAA-GUUA- AACGGC-GAG GUUAAGGGA( ucuaca)UUC 1201 C-GGAGCCGA AGC(GAAA-) GCGAGUUU(U AA-UA)GAGC GU-------- ---------- 1261 ---------- ------a-ua G-UCGUUUGA UUUA-GACAC GAAAC-CAA- GUGA-GCUAU 1321 UUAUGAC|CA GGUUGAAGCA UGGG(UAAG) AC-CUUGUGG AGGACCGAAC C-AGUACAU( 1381 -GUUGAAAA) AUGUU|UGG- AUGAG-UUGU GAAUAGGGGU (-GAAAG)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |-~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~-~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.psitt.05 4759 bp RNA RNA 18-SEP-1997 DEFINITION Chlamydia psittaci.; . ACCESSION U68452 KEYWORDS . SOURCE Chlamydia psittaci. ORGANISM Chlamydia psittaci. REFERENCE 1 (bases 1 to 1284) AUTHORS Everett,K.D. and Andersen,A.A. TITLE gene are phylogenetic markers for Chlamydia spp The ribosomal intergenic spacer and domain I of the 23S rRNA JOURNAL Int. J. Syst. Bacteriol. 47 (2), 461-473 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1284) AUTHORS Everett,K.D.E. and Andersen,A.A. TITLE Direct Submission JOURNAL Submitted (29-AUG-1996) USDA-ARS-NADC, 2300 Dayton Avenue, Ames, IA 50010, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U68452 BASE COUNT 271 a 141 c 228 g 205 t 3914 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ----aauu|- ----UACAGA CCAAGUUAU- --UAAGAGCU AUUGGUGGAU 121 G|CCUUGG|C AUUGAC|AG| GC-GAUGAAG GA|UGCG(UU UA-CC-)U|- GCA-GUAAUC 181 UUCGGC|-GA GCU(G-GU-A UAA-)AGCUG UG-ACC-CGG AGGUC|UCCG AAUGGG(GCA 241 A)CCC|ggua gau-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uaauc)- aucuacc-AU UA-UACGUU( 481 GA-AUACA-- UA)GGC-GUA -U-A--AGG- CGACAC|CU- GCUGAACU|G A(AACA)UCU 541 UAGUA-AGCA GAGGAAAAUA AAUC(-aaa- --)GAGAU|U CC-CUAAGUA GC(GGCGA)G 601 CGA-AAG-GG GA-GAA-GAC CAAAccacau -u-------- -----(-uuu -)-------- 661 -----aaugu gggguuguag ggucgauaa- ---------- ---------- ---------- 721 ---------- caugggaucu uaaguuuu-a guuGAAuacu u-c(u-ggaa a)g-uagaac 781 |g(aua)caG GG(UGAUAGU )CCCGU-Aga c-gaaaaaac aa-gagacu- ---------- 841 ---------- --cuauucga uaccu---GA GUAGGGCUAG A(CACGUG-A AA)CCUAGUC 901 UGAAUCU-GG G-GA(GACCA C)UC-UCC-A AGUCUAA--- -AUACUAGUC AAUGACCUAU 961 AGUG-AAC-C AGUACU(GUG A)-AGGA-AA GGUGAAAA-G AACCCU(ugu ua-)AGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAG-UAGCU UAUAA-G-CG GUCGAAGACC -uau---aac 1081 uuc-----(- ---uuag--) --------ga agucau-GGU UGACGGCGUG CCU(UUU-GC 1141 AU|G)AUGA| -GCCAGGGAG UUAA-GUUA- AACGGC-GAG GUUAAGGGA( uuuaca)UUC 1201 C-GGAGCCGA AGC(GAAA-) GUGAGUUU(U AA-AA)GAGC GU-------- ---------- 1261 ---------- ------u-ua G-UCGUUUGA UUUA-GACAC GAAAC-CAA- GUGA-GCUAU 1321 UUAUGAC|CA GGUUGAAGCA UGGG(UAAG) AC-CUUGUGG AGGACCGAAC C-AGUACAU( 1381 -GUUGAAAA) AUGUU|UGG- AUGAG-UUGU GAAUAGGGGU (-GAAAG)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |-~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~-~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.psitt.06 4759 bp RNA RNA 18-SEP-1997 DEFINITION Chlamydia psittaci.; . ACCESSION U68453 KEYWORDS . SOURCE Chlamydia psittaci. ORGANISM Chlamydia psittaci. REFERENCE 1 (bases 1 to 1283) AUTHORS Everett,K.D. and Andersen,A.A. TITLE gene are phylogenetic markers for Chlamydia spp The ribosomal intergenic spacer and domain I of the 23S rRNA JOURNAL Int. J. Syst. Bacteriol. 47 (2), 461-473 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1283) AUTHORS Everett,K.D.E. and Andersen,A.A. TITLE Direct Submission JOURNAL Submitted (29-AUG-1996) USDA-ARS-NADC, 2300 Dayton Avenue, Ames, IA 50010, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U68453 BASE COUNT 274 a 144 c 226 g 201 t 3914 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ----aauu|- ----UACAGA CCAAGUUAU- --UAAGAGCU AUUGGUGGAU 121 G|CCUUGG|C AUUGAC|AG| GC-GAUGAAG GA|UGCG(UU UA-CC-)U|- GCA-GUAAUC 181 UUCGGC|-GA GCU(G-GU-A UAA-)AGCUA UG-ACC-CGG AGGUC|UCCG AAUGGG(GCA 241 A)CCC|ggua gau-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uaauc)- aucuacc-AU UA-UACGUU( 481 GA-AUACA-- UA)GGC-GUA -U-A--AGG- CGACAC|CU- GCUGAACU|G A(AACA)UCU 541 UAGUA-AGCA GAGGAAAAUA AAUC(-aaa- --)GAGAU|U CC-CUAAGUA GC(GGCGA)G 601 CGA-AAA-GG GA-GAA-GAC CAAAccacau -u-------- -----(-uuu -)-------- 661 -----aaugu gggguuguag ggucgauaa- ---------- ---------- ---------- 721 ---------- caugggaucu uaaguuuu-a guuGAAuacu u-c(u-ggaa a)g-cagaac 781 |g(aua)caG GG(UGAUAGU )CCCGU-Aga c-gaaaaaac aa-gagacu- ---------- 841 ---------- --cuauucga uaccu---GA GUAGGGCUAG A(CACGUG-A AA)CCUAGUC 901 UGAAUCU-GG G-GA(GACCA C)UC-UCC-A AGUCUAA--- -AUACUAGUC AAUGACCUAU 961 AGUG-AAC-C AGUACU(GUG A)-AGGA-AA GGUGAAAA-G AACCCU(ugu ua-)AGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAG-UAGCU UAUAA-G-CG GUCGAAGACC -uau---aac 1081 uuc-----(- ---uuag--) --------ga agucau-GGU UGACGGCGUG CCU(UUU-GC 1141 AU|G)AUGA| -GCCAGGGAG UUAA-GUUA- AACGGC-GAG GUUAAGGGA( uuuaca)UUC 1201 C-GGAGCCGA AGC(GAAA-) GCGAGUUU(U AA-AA)GAGC GU-------- ---------- 1261 ---------- ------u-ua G-UCGUUUGA UUUA-GACAC GAAAC-CAA- GUGA-GCUAU 1321 UUAUGAC|CA GGUUGAAGCA UGGG(UAAG) AC-CAUGUGG AGGACCGAAC C-AGUACAU( 1381 -GUUGAAAA) AUGUU|UGG- AUGAG-UUGC GAAUAGGGGU (-GAAAG)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |-~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~-~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.psitt.07 4759 bp RNA RNA 18-SEP-1997 DEFINITION Chlamydia psittaci.; . ACCESSION U68454 KEYWORDS . SOURCE Chlamydia psittaci. ORGANISM Chlamydia psittaci. REFERENCE 1 (bases 1 to 1283) AUTHORS Everett,K.D. and Andersen,A.A. TITLE gene are phylogenetic markers for Chlamydia spp The ribosomal intergenic spacer and domain I of the 23S rRNA JOURNAL Int. J. Syst. Bacteriol. 47 (2), 461-473 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1283) AUTHORS Everett,K.D.E. and Andersen,A.A. TITLE Direct Submission JOURNAL Submitted (29-AUG-1996) USDA-ARS-NADC, 2300 Dayton Avenue, Ames, IA 50010, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U68454 Epizootic avian isolate from an outbreak of meningopneumonitis in humans in the 1930's; for the MOMP gene of this strain see: Zhang, Y. -X. et al. Cloning and sequence analysis of the major outer membrane protein genes of two Chlamydia psittaci strains. Infect. Immun. 57:1621-1625 (1989). BASE COUNT 274 a 143 c 226 g 202 t 3914 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ----aauu|- ----UACAGA CCAAGUUAU- --UAAGAGCU AUUGGUGGAU 121 G|CCUUGG|C AUUGAC|AG| GC-GAUGAAG GA|UGCG(UU UA-CC-)U|- GCA-GUAAUC 181 UUCGGC|-GA GCU(G-GU-A UAA-)AGCUA UG-ACC-CGG AGGUC|UCCG AAUGGG(GCA 241 A)CCC|ggua gau-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uaauc)- aucuacc-AU UA-UACGUU( 481 GA-AUACA-- UA)GGC-GUA -U-A--AGG- CGACAC|CU- GCUGAACU|G A(AACA)UCU 541 UAGUA-AGCA GAGGAAAAUA AAUC(-aaa- --)GAGAU|U CC-CUAAGUA GC(GGCGA)G 601 CGA-AAA-GG GA-GAA-GAC CAAAccacau -u-------- -----(-uuu -)-------- 661 -----aaugu gggguuguag ggucgauaa- ---------- ---------- ---------- 721 ---------- caugggaucu uaaguuuu-a guuGAAuacu u-c(u-ggaa a)g-cagaac 781 |g(aua)caG GG(UGAUAGU )CCCGU-Aga c-gaaaaaac aa-gagacu- ---------- 841 ---------- --cuauucga uaccu---GA GUAGGGCUAG A(CACGUG-A AA)CCUAGUC 901 UGAAUCU-GG G-GA(GACCA C)UC-UCC-A AGUCUAA--- -AUACUAGUC AAUGACCUAU 961 AGUG-AAC-C AGUACU(GUG A)-AGGA-AA GGUGAAAA-G AACCCU(ugu ua-)AGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAG-UAGCU UAUAA-G-CG GUCGAAGACC -uau---aac 1081 uuc-----(- ---uuag--) --------ga agucau-GGU UGACGGCGUG CCU(UUU-GC 1141 AU|G)AUGA| -GCCAGGGAG UUAA-GUUA- AACGGC-GAG GUUAAGGGA( uuuaca)UUC 1201 C-GGAGCCGA AGC(GAAA-) GCGAGUUU(U AA-AA)GAGC GU-------- ---------- 1261 ---------- ------u-ua G-UCGUUUGA UUUA-GACAC GAAAC-CAA- GUGA-GCUAU 1321 UUAUGAC|CA GGUUGAAGCA UGGG(UAAG) AC-CAUGUGG AGGACCGAAC C-AGUACAU( 1381 -GUUGAAAA) AUGUU|UGG- AUGAG-UUGU GAAUAGGGGU (-GAAAG)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |-~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~-~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.psitt.08 4759 bp RNA RNA 18-SEP-1997 DEFINITION Chlamydia psittaci.; . ACCESSION U68455 KEYWORDS . SOURCE Chlamydia psittaci. ORGANISM Chlamydia psittaci. REFERENCE 1 (bases 1 to 1284) AUTHORS Everett,K.D. and Andersen,A.A. TITLE gene are phylogenetic markers for Chlamydia spp The ribosomal intergenic spacer and domain I of the 23S rRNA JOURNAL Int. J. Syst. Bacteriol. 47 (2), 461-473 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1284) AUTHORS Everett,K.D.E. and Andersen,A.A. TITLE Direct Submission JOURNAL Submitted (29-AUG-1996) USDA-ARS-NADC, 2300 Dayton Avenue, Ames, IA 50010, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U68455 BASE COUNT 272 a 143 c 227 g 203 t 3914 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ----aauu|- ----UACAGA CCAAGUUAU- --UAAGAGCU AUUGGUGGAU 121 G|CCUUGG|C AUUGAC|AG| GC-GAUGAAG GA|UGCG(UU UA-CC-)U|- GCA-GUAAUC 181 UUCGGC|-GA GCU(G-GU-A UAA-)AGCUA UG-ACC-CGG AGGUC|UCCG AAUGGG(GCA 241 A)CCC|ggua gau-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uaauc)- aucuacc-AU UA-UACGUU( 481 GA-AUACA-- UA)GAC-GUA -U-A--AGG- CGACAC|CU- GCUGAACU|G A(AACA)UCU 541 UAGUA-AGCA GAGGAAAAUA AAUC(-aaa- --)GAGAU|U CC-CUGAGUA GC(GGCGA)G 601 CGA-AAG-GG GA-GAA-GAC CAAAccacau -u-------- -----(-uuu -)-------- 661 -----aaugu gggguuguag ggucgauaa- ---------- ---------- ---------- 721 ---------- caugggaucu uaaguuuu-a guuGAAuacu u-c(u-ggaa a)g-uagaac 781 |g(aua)caG GG(UGAUAGU )CCCGU-Aga c-gaaaaaac aa-gagacu- ---------- 841 ---------- --cuauucga uaccu---GA GUAGGGCUAG A(CACGUG-A AA)CCUAGUC 901 UGAAUCU-GG G-GA(GACCA C)UC-UCC-A AGUCUAA--- -AUACUAGUC AAUGACCUAU 961 AGUG-AAC-C AGUACU(GUG A)-AGGA-AA GGUGAAAA-G AACCCU(ugu ua-)AGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAG-UAGCU UAUAA-G-CG GUCGAAGACC -uau---aac 1081 uuc-----(- ---uuag--) --------ga agucau-GGU UGACGGCGUG CCU(UUU-GC 1141 AU|G)AUGA| -GCCAGGGAG UUAA-GUUA- AACGGC-GAG GUUAAGGGA( ucuaca)UUC 1201 C-GGAGCCGA AGC(GAAA-) GCGAGUUU(U AA-AA)GAGC GU-------- ---------- 1261 ---------- ------u-ua G-UCGUUUGA UUUA-GACAC GAAAC-CAA- GUGA-GCUAU 1321 UUAUGAC|CA GGUUGAAGCA UGGG(UAAG) AC-CUUGUGG AGGACCGAAC C-AGUACAU( 1381 -GUUGAAAA) AUGUU|UGG- AUGAG-UUGU GAAUAGGGGU (-GAAAG)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |-~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~-~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.psitt.09 4759 bp RNA RNA 18-SEP-1997 DEFINITION Chlamydia psittaci.; . ACCESSION U68456 KEYWORDS . SOURCE Chlamydia psittaci. ORGANISM Chlamydia psittaci. REFERENCE 1 (bases 1 to 1284) AUTHORS Everett,K.D. and Andersen,A.A. TITLE The ribosomal intergenic spacer and domain I of the 23S rRNA gene are phylogenetic markers for Chlamydia spp JOURNAL Int. J. Syst. Bacteriol. 47 (2), 461-473 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1284) AUTHORS Everett,K.D.E. and Andersen,A.A. TITLE Direct Submission JOURNAL Submitted (29-AUG-1996) USDA-ARS-NADC, 2300 Dayton Avenue, Ames, IA 50010, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U68456 BASE COUNT 271 a 143 c 228 g 203 t 3914 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ----aauu|- ----UACAGA CCAAGUUAU- --UAAGAGCU AUUGGUGGAU 121 G|CCUUGG|C AUUGAC|AG| GC-GAUGAAG GA|UGCG(UU UA-CC-)U|- GCA-GUAAUC 181 UUCGGC|-GA GCU(G-GU-A UAA-)AGCUA UG-ACC-CGG AGGUC|UCCG AAUGGG(GCA 241 A)CCC|ggua gau-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uaauc)- aucuacc-AU UA-UACGUU( 481 GA-AUACA-- UA)GAC-GUA -U-A--AGG- CGACAC|CU- GCUGAACU|G A(AACA)UCU 541 UAGUA-AGCA GAGGAAAAUA AAUC(-aaa- --)GAGAU|U CC-CUGAGUA GC(GGCGA)G 601 CGA-AAG-GG GA-GAA-GAC CAAAccacau -u-------- -----(-uuu -)-------- 661 -----aaugu gggguuguag ggucgauaa- ---------- ---------- ---------- 721 ---------- caugggaucu uaaguuuu-a guuGAAuacu u-c(u-ggaa a)g-uagaac 781 |g(aua)caG GG(UGAUAGU )CCCGU-Aga c-gaaaaaac aa-gagacu- ---------- 841 ---------- --cuauucga uaccu---GA GUAGGGCUAG A(CACGUG-A AA)CCUAGUC 901 UGAAUCU-GG G-GA(GACCA C)UC-UCC-A AGUCUAA--- -AUACUAGUC AAUGACCUAU 961 AGUG-AAC-C AGUACU(GUG A)-GGGA-AA GGUGAAAA-G AACCCU(ugu ua-)AGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAG-UAGCU UAUAA-G-CG GUCGAAGACC -uau---aac 1081 uuc-----(- ---uuag--) --------ga agucau-GGU UGACGGCGUG CCU(UUU-GC 1141 AU|G)AUGA| -GCCAGGGAG UUAA-GUUA- AACGGC-GAG GUUAAGGGA( ucuaca)UUC 1201 C-GGAGCCGA AGC(GAAA-) GCGAGUUU(U AA-AA)GAGC GU-------- ---------- 1261 ---------- ------u-ua G-UCGUUUGA UUUA-GACAC GAAAC-CAA- GUGA-GCUAU 1321 UUAUGAC|CA GGUUGAAGCA UGGG(UAAG) AC-CUUGUGG AGGACCGAAC C-AGUACAU( 1381 -GUUGAAAA) AUGUU|UGG- AUGAG-UUGU GAAUAGGGGU (-GAAAG)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |-~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~-~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.psitt.10 4759 bp RNA RNA 18-SEP-1997 DEFINITION Chlamydia psittaci.; . ACCESSION U68457 KEYWORDS . SOURCE Chlamydia psittaci. ORGANISM Chlamydia psittaci. REFERENCE 1 (bases 1 to 1285) AUTHORS Everett,K.D. and Andersen,A.A. TITLE gene are phylogenetic markers for Chlamydia spp The ribosomal intergenic spacer and domain I of the 23S rRNA JOURNAL Int. J. Syst. Bacteriol. 47 (2), 461-473 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1285) AUTHORS Everett,K.D.E. and Andersen,A.A. TITLE Direct Submission JOURNAL Submitted (29-AUG-1996) USDA-ARS-NADC, 2300 Dayton Avenue, Ames, IA 50010, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U68457 BASE COUNT 272 a 144 c 225 g 204 t 3914 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ----aauu|- ----UACAGA CCAAGUUAG- --UAAGAGCU AUUGGCGGAU 121 G|CCUUGG|C AUUGAC|AG| GC-GAUGAAG GA|UGCG(UU UA-CC-)U|- GCA-GUAAUC 181 UUCGGC|-GA GCU(G-GU-A UAA-)AGCUA UG-ACC-CGG AGGUC|UCCG AAUGGG(GCA 241 A)CCC|ggua gau-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uaauc)- aucuacc-AU UA-UAUGCU( 481 GA-AUACA-- UA)GGC-AUA -U-A--AAG- CGACAC|CU- GCUGAACU|G A(AACA)UCU 541 UAGUA-AGCA GAGGAAAAGA AAUC(-aaa- --)GAGAU|U CC-CUGAGUA GC(GGCGA)G 601 CGA-AAG-GG GA-UUA-GAC CAAAccacgu -u-------- -----(-uuu -)-------- 661 -----aaugu gggguuguag ggucgauaa- ---------- ---------- ---------- 721 ---------- caugggaucu uaaguuuu-a guuGAAuacu u-c(u-ggaa a)g-uagaac 781 |g(aca)caG GG(UGAUAGU )CCCGU-Aaa c-gaaaaaac aa-gagacu- ---------- 841 ---------- --cuauucga uaccu---GA GUAGGGCUAG A(CACGUG-A AA)CCUAGUC 901 UGAAUCU-GG G-GA(GACCA C)UC-UCC-A AGUCUAA--- -AUACUAGUC AAUGACCUAU 961 AGUG-AAC-C AGUACU(GUG A)-AGGA-AA GGUGAAAA-G AACCCU(ugu ua-)AGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAA-UAGCU UAUAA-G-CG GUCGAAGACC -uau--uagc 1081 uuu-----(- ---uucg--) --------aa agcaau-GGU UGACGGCGUG CCU(UUU-GC 1141 AU|G)AUGA| -GCCAGGGAG UUAA-GUUA- AACGGC-GAG GUUAAGGGA( uuuaca)UUC 1201 C-GGAGCCGA AGC(GAAA-) GCGAGUUU(U AA-UA)GAGC GU-------- ---------- 1261 ---------- ------u-ua G-UCGUUUAA UUUA-GACAC GAAAC-CAA- GUGA-GCUAU 1321 UUAUGAC|CA GGUUGAAGCG UGGG(UAAG) AC-CUUGUGG AGGACCGAAC C-AGUACAU( 1381 -GUUGAAAA) AUGUU|UGG- AUGAG-UUGU GAAUAGGGGU (-GAAA~)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |-~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~-~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.psitt.11 4759 bp RNA RNA 18-SEP-1997 DEFINITION Chlamydia psittaci.; . ACCESSION U68458 KEYWORDS . SOURCE Chlamydia psittaci. ORGANISM Chlamydia psittaci. REFERENCE 1 (bases 1 to 1285) AUTHORS Everett,K.D. and Andersen,A.A. TITLE The ribosomal intergenic spacer and domain I of the 23S rRNA gene are phylogenetic markers for Chlamydia spp JOURNAL Int. J. Syst. Bacteriol. 47 (2), 461-473 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1285) AUTHORS Everett,K.D.E. and Andersen,A.A. TITLE Direct Submission JOURNAL Submitted (29-AUG-1996) USDA-ARS-NADC, 2300 Dayton Avenue, Ames, IA 50010, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U68458 BASE COUNT 271 a 144 c 226 g 204 t 3914 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ----aauu|- ----UACAGA CCAAGUUAG- --UAAGAGCU AUUGGCGGAU 121 G|CCUUGG|C AUUGAC|AG| GC-GAUGAAG GA|UGCG(UU UA-CC-)U|- GCA-GUAAUC 181 UUCGGC|-GA GCU(G-GU-A UAA-)AGCUA UG-ACC-CGG AGGUC|UCCG AAUGGG(GCA 241 A)CCC|ggua gau-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uaauc)- aucuacc-AU UA-UAUGCU( 481 GA-AUACA-- UA)GGC-AUA -U-A--AAG- CGACAC|CU- GCUGAACU|G A(AACA)UCU 541 UAGUA-AGCA GAGGAAAAGA AAUC(-aaa- --)GAGAU|U CC-CUGAGUA GC(GGCGA)G 601 CGA-AAG-GG GA-UUA-GAC CAAAccacgu -u-------- -----(-uuu -)-------- 661 -----aaugu gggguuguag ggucgauaa- ---------- ---------- ---------- 721 ---------- caugggaucu uaaguuuu-a guuGAAuacu u-c(u-ggaa a)g-uagaac 781 |g(aca)caG GG(UGAUAGU )CCCGU-Aaa c-gaaaaaac aa-gagacu- ---------- 841 ---------- --cuauucga uaccu---GA GUAGGGCUAG A(CACGUG-A AA)CCUAGUC 901 UGAAUCU-GG G-GA(GACCA C)UC-UCC-A AGUCUAA--- -AUACUAGUC AAUGACCUAU 961 AGUG-AAC-C AGUACU(GUG A)-AGGA-AA GGUGAAAA-G AACCCU(ugu ua-)AGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAA-UAGCU UAUAA-G-CG GUCGAAGACC -uau--uagc 1081 uuu-----(- ---uucg--) --------aa agcaau-GGU UGACGGCGUG CCU(UUU-GC 1141 AU|G)AUGA| -GCCAGGGAG UUAA-GUUA- AACGGC-GAG GUUAAGGGA( uuuaca)UUC 1201 C-GGAGCCGA AGC(GAAA-) GCGAGUUU(U AA-UA)GAGC GU-------- ---------- 1261 ---------- ------u-ua G-UCGUUUGA UUUA-GACAC GAAAC-CAA- GUGA-GCUAU 1321 UUAUGAC|CA GGUUGAAGCG UGGG(UAAG) AC-CUUGUGG AGGACCGAAC C-AGUACAU( 1381 -GUUGAAAA) AUGUU|UGG- AUGAG-UUGU GAAUAGGGGU (-GAAA~)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |-~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~-~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.psitt.12 4759 bp RNA RNA 18-SEP-1997 DEFINITION Chlamydia psittaci.; . ACCESSION U68459 KEYWORDS . SOURCE Chlamydia psittaci. ORGANISM Chlamydia psittaci. REFERENCE 1 (bases 1 to 1285) AUTHORS Everett,K.D. and Andersen,A.A. TITLE gene are phylogenetic markers for Chlamydia spp The ribosomal intergenic spacer and domain I of the 23S rRNA JOURNAL Int. J. Syst. Bacteriol. 47 (2), 461-473 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1285) AUTHORS Everett,K.D.E. and Andersen,A.A. TITLE Direct Submission JOURNAL Submitted (29-AUG-1996) USDA-ARS-NADC, 2300 Dayton Avenue, Ames, IA 50010, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U68459 BASE COUNT 272 a 143 c 226 g 204 t 3914 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ----aauu|- ----UACAGA CCAAGUUAG- --UAAGAGCU AUUGGCGGAU 121 G|CCUUGG|C AUUGAC|AG| GC-GAUGAAG GA|UGCG(UU UA-CC-)U|- GCA-GUAAUC 181 UUCGGC|-GA GCU(G-GU-A UAA-)AGCUA UG-ACC-CGG AGGUC|UCCG AAUGGG(GCA 241 A)CCC|ggua gau-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uaauc)- aucuacc-AU UA-UAUGCU( 481 GA-AUACA-- UA)GGC-AUA -U-A--AAG- CGACAC|CU- GAUGAACU|G A(AACA)UCU 541 UAGUA-AGCA GAGGAAAAGA AAUC(-aaa- --)GAGAU|U CC-CUGAGUA GC(GGCGA)G 601 CGA-AAG-GG GA-UUA-GAC CAAAccacgu -u-------- -----(-uuu -)-------- 661 -----aaugu gggguuguag ggucgauaa- ---------- ---------- ---------- 721 ---------- caugggaucu uaaguuuu-a guuGAAuacu u-c(u-ggaa a)g-uagaac 781 |g(aca)caG GG(UGAUAGU )CCCGU-Aaa c-gaaaaaac aa-gagacu- ---------- 841 ---------- --cuauucga uaccu---GA GUAGGGCUAG A(CACGUG-A AA)CCUAGUC 901 UGAAUCU-GG G-GA(GACCA C)UC-UCC-A AGUCUAA--- -AUACUAGUC AAUGACCUAU 961 AGUG-AAC-C AGUACU(GUG A)-AGGA-AA GGUGAAAA-G AACCCU(ugu ua-)AGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAA-UAGCU UAUAA-G-CG GUCGAAGACC -uau--uagc 1081 uuu-----(- ---uucg--) --------aa agcaau-GGU UGACGGCGUG CCU(UUU-GC 1141 AU|G)AUGA| -GCCAGGGAG UUAA-GUUA- AACGGC-GAG GUUAAGGGA( uuuaca)UUC 1201 C-GGAGCCGA AGC(GAAA-) GCGAGUUU(U AA-UA)GAGC GU-------- ---------- 1261 ---------- ------u-ua G-UCGUUUGA UUUA-GACAC GAAAC-CAA- GUGA-GCUAU 1321 UUAUGAC|CA GGUUGAAGCG UGGG(UAAG) AC-CUUGUGG AGGACCGAAC C-AGUACAU( 1381 -GUUGAAAA) AUGUU|UGG- AUGAG-UUGU GAAUAGGGGU (-GAAA~)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |-~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~-~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.psitt.14 4759 bp RNA RNA 18-SEP-1997 DEFINITION Chlamydia psittaci.; . ACCESSION U68445 KEYWORDS . SOURCE Chlamydia psittaci. ORGANISM Chlamydia psittaci. REFERENCE 1 (bases 1 to 1282) AUTHORS Everett,K.D. and Andersen,A.A. TITLE The ribosomal intergenic spacer and domain I of the 23S rRNA gene are phylogenetic markers for Chlamydia spp JOURNAL Int. J. Syst. Bacteriol. 47 (2), 461-473 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1282) AUTHORS Everett,K.D.E. and Andersen,A.A. TITLE Direct Submission JOURNAL Submitted (29-AUG-1996) USDA-ARS-NADC, 2300 Dayton Avenue, Ames, IA 50010, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U68445 BASE COUNT 267 a 145 c 229 g 200 t 3918 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- ----UACAGA CCAAGUUAU- --UAAGAGUU AUUGGUGGAU 121 G|CCUUGG|C AUUGAC|AG| GC-GAUGAAG GA|UGCG(UU UA-CC-)U|- GCA-GUAAUC 181 UUCGGC|-GA GCU(G-GU-A UAA-)AGCUA UG-ACC-CGG AGGUC|UCCG AAUGGG(GCA 241 A)CCC|gaua gau-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uaauc)- aucuauc-AU UG-UACGCU( 481 GA-AUACA-- UA)GGC-GUA -U-A--AGG- CGAUAC|CU- GCUGAACU|G A(AACA)UCU 541 UAGUA-AGCA GAGGAAAAUA AAUC(-aaa- --)GAGAU|U CC-CUGAGUA GC(GGCGA)G 601 CGA-AAG-GG GA-GAA-GAC CAAAccacau -u-------- -----(-uuu -)-------- 661 -----aaugu gggguuguag ggucgauaa- ---------- ---------- ---------- 721 ---------- caugggaucu uaaguuuu-a gucGAAuacu u-c(u-ggaa a)g-uagaac 781 |g(aua)caG GG(UGAUAGU )CCCGU-Aga c-gaaaaaac aa-gagacu- ---------- 841 ---------- --cuauucga uaccu---GA GUAGGGCUAG A(CACGUG-A AA)CCUAGUC 901 UGAAUCU-GG G-GA(GACCA C)UC-UCC-A AGUCUAA--- -AUACUAGUC AAUGACCUAU 961 AGUG-AAC-C AGUACU(GUG A)-AGGA-AA GGUGAAAA-G AACCCU(ugu ua-)AGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAG-UAGCU UAUAA-G-CG GUCGAGGACC -uau---aac 1081 uuc-----(- ---uucg--) --------ga agucau-GGU UGACGGCGUG CCU(UUU-GC 1141 AU|G)AUGA| -GCCAGGGAG UUAA-GUUA- AACGGC-GAG GUUAAGGGA( ucuaca)UUC 1201 C-GGAGCCGA AGC(GAAA-) GCGAGUUU(U AA-AA)GAGC GU-------- ---------- 1261 ---------- ------u-ua G-UCGUUUGA UUUA-GACAC GAAAC-CAA- GUGA-GCUAU 1321 UUAUGAC|CA GGUUGAAGCA UGGG(UAAG) AC-CUUGUGG AGGACCGAAC C-AGUACAU( 1381 -GUUGAAAA) AUGUC|UGG- AUGAG-UUGU GAAUAGGGGC (-GAAAG)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |-~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~-~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.psitt.15 4759 bp RNA RNA 18-SEP-1997 DEFINITION Chlamydia psittaci.; . ACCESSION U68446 KEYWORDS . SOURCE Chlamydia psittaci. ORGANISM Chlamydia psittaci. REFERENCE 1 (bases 1 to 1282) AUTHORS Everett,K.D. and Andersen,A.A. TITLE The ribosomal intergenic spacer and domain I of the 23S rRNA gene are phylogenetic markers for Chlamydia spp JOURNAL Int. J. Syst. Bacteriol. 47 (2), 461-473 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1282) AUTHORS Everett,K.D.E. and Andersen,A.A. TITLE Direct Submission JOURNAL Submitted (29-AUG-1996) USDA-ARS-NADC, 2300 Dayton Avenue, Ames, IA 50010, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U68446 BASE COUNT 268 a 143 c 228 g 202 t 3918 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- ----UACAGA CCAAGUUAU- --UAAGAGUU AUUGGUGGAU 121 G|CCUUGG|C AUUGAC|AG| GC-GAUGAAG GA|UGCG(UU UA-CC-)U|- GCA-GUAAUC 181 UUCGGC|-GA GCU(G-GU-A UAA-)AGCUA UG-ACC-CGG AGGUC|UCCG AAUGGG(GCA 241 A)CCC|gaua gau-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uaauc)- aucuauc-AU UG-UACGCU( 481 GA-AUACA-- UA)GGC-GUA -U-A--AGG- CGAUAC|CU- GCUGAACU|G A(AACA)UCU 541 UAGUA-AGCA GAGGAAAAUA AAUC(-aaa- --)GAGAU|U CC-CUGAGUA GC(GGCGA)G 601 CGA-AAG-GG GA-GAA-GAC CAAAccacau -u-------- -----(-uuu -)-------- 661 -----aaugu gggguuguag ggucgauaa- ---------- ---------- ---------- 721 ---------- caugggaucu uaaguuuu-a gucGAAuacu u-c(u-ggaa a)g-uagaac 781 |g(aua)caG GG(UGAUAGU )CCCGU-Aga c-gaaaaaac aa-gagacu- ---------- 841 ---------- --cuauucga uaccu---GA GUAGGGCUAG A(CACGUG-A AA)CCUAGUC 901 UGAAUCU-GG G-GA(GACCA C)UC-UCC-A AGUCUAA--- -AUACUAGUC AAUGACCUAU 961 AGUG-AAC-C AGUACU(GUG A)-AGGA-AA GGUGAAAA-G AACCCU(ugu ua-)AGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAG-UAGCU UAUAA-G-CG GUCGAAGACC -uau---aac 1081 uuc-----(- ---uucg--) --------ga agucau-GGU UGACGGCGUG CCU(UUU-GC 1141 AU|G)AUGA| -GCCAGGGAG UUAA-GUUA- AACGGC-GAG GUUAAGGGA( ucuaca)UUC 1201 C-GGAGCCGA AGC(GAAA-) GCGAGUUU(U AA-AA)GAGC GU-------- ---------- 1261 ---------- ------u-ua G-UCGUUUGA UUUA-GACAC GAAAC-CAA- GUGA-GCUAU 1321 UUAUGAC|CA GGUUGAAGCA UGGG(UAAG) AC-CUUGUGG AGGACCGAAC C-AGUACAU( 1381 -GUUGAAAA) AUGUU|UGG- AUGAG-UUGU GAAUAGGGGU (-GAAAG)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |-~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~-~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.psitt.16 4759 bp RNA RNA 18-SEP-1997 DEFINITION Chlamydia psittaci.; . ACCESSION U68444 KEYWORDS . SOURCE Chlamydia psittaci. ORGANISM Chlamydia psittaci. REFERENCE 1 (bases 1 to 1282) AUTHORS Everett,K.D. and Andersen,A.A. TITLE The ribosomal intergenic spacer and domain I of the 23S rRNA gene are phylogenetic markers for Chlamydia spp JOURNAL Int. J. Syst. Bacteriol. 47 (2), 461-473 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1282) AUTHORS Everett,K.D.E. and Andersen,A.A. TITLE Direct Submission JOURNAL Submitted (29-AUG-1996) USDA-ARS-NADC, 2300 Dayton Avenue, Ames, IA 50010, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U68444 BASE COUNT 267 a 143 c 228 g 203 t 3918 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- ----UACAGA CCAAGUUAU- --UAAGAGUU AUUGGUGGAU 121 G|CCUUGG|C AUUGAC|AG| GC-GAUGAAG GA|UGCG(UU UA-CC-)U|- GCA-GUAAUC 181 UUCGGC|-GA GCU(G-GU-A UAA-)AGCUA UG-ACC-CGG AGGUC|UCCG AAUGGG(GCA 241 A)CCC|gaua gau-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uaauc)- aucuauc-AU UG-UACGCU( 481 GA-AUACA-- UA)GGC-GUA -U-A--AGG- CGAUAC|CU- GCUGAACU|G A(AACA)UCU 541 UAGUA-AGCA GAGGAAAAUA AAUC(-aaa- --)GAGAU|U CC-CUGAGUA GC(GGCGA)G 601 CGA-AAG-GG GA-GAA-GAC CAAAccacau -u-------- -----(-uuu -)-------- 661 -----aaugu gggguuguag ggucgauaa- ---------- ---------- ---------- 721 ---------- caugggaucu uaaguuuu-a gucGAAuacu u-c(u-ggaa a)g-uagaac 781 |g(aua)caG GG(UGAUAGU )CCCGU-Aga c-gaaaaaac aa-gagacu- ---------- 841 ---------- --cuauucga uaccu---GA GUAGGGCUAG A(CACGUG-A AA)CCUAGUC 901 UGAAUCU-GG G-GA(GACCA C)UC-UCC-A AGUCUAA--- -AUACUAGUC AAUGACCUAU 961 AGUG-AAC-C AGUACU(GUG A)-AGGA-AA GGUGAAAA-G AACCCU(ugu ua-)AGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAG-UAGCU UAUAA-G-CG GUCGAAGACC -uau---aac 1081 uuc-----(- ---uucg--) --------ga agucau-GGU UGACGGCGUG CCU(UUU-GC 1141 AU|G)AUGA| -GCCAGGGAG UUAA-GUUA- AACGGC-GAG GUUAAGGGA( ucuaca)UUC 1201 C-GGAGCCGA AGC(GAAA-) GCGAGUUU(U AA-AA)GAGC GU-------- ---------- 1261 ---------- ------u-ua G-UCGUUUGA UUUA-GACAC GAAAC-CAA- GUGA-GCUAU 1321 UUAUGAC|CA GGUUGAAGCA UGGG(UUAG) AC-CUUGUGG AGGACCGAAC C-AGUACAU( 1381 -GUUGAAAA) AUGUU|UGG- AUGAG-UUGU GAAUAGGGGU (-GAAAG)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |-~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~-~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.psitt.17 4759 bp RNA RNA 18-SEP-1997 DEFINITION Chlamydia psittaci.; . ACCESSION U68448 KEYWORDS . SOURCE Chlamydia psittaci. ORGANISM Chlamydia psittaci. REFERENCE 1 (bases 1 to 1283) AUTHORS Everett,K.D. and Andersen,A.A. TITLE gene are phylogenetic markers for Chlamydia spp The ribosomal intergenic spacer and domain I of the 23S rRNA JOURNAL Int. J. Syst. Bacteriol. 47 (2), 461-473 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1283) AUTHORS Everett,K.D.E. and Andersen,A.A. TITLE Direct Submission JOURNAL Submitted (29-AUG-1996) USDA-ARS-NADC, 2300 Dayton Avenue, Ames, IA 50010, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U68448 BASE COUNT 272 a 143 c 226 g 200 t 3918 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- ----UACAGA CCAAGUUAU- --UAAGAGCU AUUGGUGGAU 121 G|CCUUGG|C AUUGAC|AG| GC-GAUGAAG GA|UGCG(UU UA-CC-)U|- GCA-GUAAUC 181 UUCGGC|-GA GCU(G-GU-A UAA-)AGCUA UG-ACC-CGG AGGUC|UCCG AAUGGG(GCA 241 A)CCC|ggua gau-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uaauc)- aucuacc-AU UA-UACGUU( 481 GA-AUACA-- UA)GGC-GUA -U-A--AGG- CGACAC|CU- GCUGAACU|G A(AACA)UCU 541 UAGUA-AGCA GAGGAAAAUA AAUC(-aaa- --)GAGAU|U CC-CUAAGUA GC(GGCGA)G 601 CGA-AAA-GG GA-GAA-GAC CAAAccacau -u-------- -----(-uuu -)-------- 661 -----aaugu gggguuguag ggucgauaa- ---------- ---------- ---------- 721 ---------- caugggaucu uaaguuuu-a guuGAAuacu u-c(u-ggaa a)g-cagaac 781 |g(aua)caG GG(UGAUAGU )CCCGU-Aga c-gaaaaaac aa-gagacu- ---------- 841 ---------- --cuauucga uaccu---GA GUAGGGCUAG A(CACGUG-A AA)CCUAGUC 901 UGAAUCU-GG G-GA(GACCA C)UC-UCC-A AGUCUAA--- -AUACUAGUC AAUGACCUAU 961 AGUG-AAC-C AGUACU(GUG A)-AGGA-AA GGUGAAAA-G AACCCU(ugu ua-)AGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAG-UAGCU UAUAA-G-CG GUCGAAGACC -uau---aac 1081 uuc-----(- ---uuag--) --------ga agucau-GGU UGACGGCGUG CCU(UUU-GC 1141 AU|G)AUGA| -GCCAGGGAG UUAA-GUUA- AACGGC-GAG GUUAAGGGA( uuuaca)UUC 1201 C-GGAGCCGA AGC(GAAA-) GCGAGUUU(U AA-AA)GAGC GU-------- ---------- 1261 ---------- ------u-ua G-UCGUUUGA UUUA-GACAC GAAAC-CAA- GUGA-GCUAU 1321 UUAUGAC|CA GGUUGAAGCA UGGG(UAAG) AC-CAUGUGG AGGACCGAAC C-AGUACAU( 1381 -GUUGAAAA) AUGUU|UGG- AUGAG-UUGU GAAUAGGGGU (-GAAAG)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |-~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~-~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.psitt.18 4759 bp RNA RNA 18-SEP-1997 DEFINITION Chlamydia psittaci.; . ACCESSION U68449 KEYWORDS . SOURCE Chlamydia psittaci. ORGANISM Chlamydia psittaci. REFERENCE 1 (bases 1 to 1284) AUTHORS Everett,K.D. and Andersen,A.A. TITLE gene are phylogenetic markers for Chlamydia spp The ribosomal intergenic spacer and domain I of the 23S rRNA JOURNAL Int. J. Syst. Bacteriol. 47 (2), 461-473 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1284) AUTHORS Everett,K.D.E. and Andersen,A.A. TITLE Direct Submission JOURNAL Submitted (29-AUG-1996) USDA-ARS-NADC, 2300 Dayton Avenue, Ames, IA 50010, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U68449 BASE COUNT 270 a 143 c 227 g 201 t 3918 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- ----UACAGA CCAAGUUAU- --UAAGAGCU AUUGGUGGAU 121 G|CCUUGG|C AUUGAC|AG| GC-GAUGAAG GA|UGCG(UU UA-CC-)U|- GCA-GUAAUC 181 UUCGGC|-GA GCU(G-GU-A UAA-)AGCUA UG-ACC-CGG AGGUC|UCCG AAUGGG(GCA 241 A)CCC|ggua gau-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uaauc)- aucuacc-AU UA-UACGUU( 481 GA-AUACA-- UA)GAC-GUA -U-A--AGG- CGACAC|CU- GCUGAACU|G A(AACA)UCU 541 UAGUA-AGCA GAGGAAAAUA AAUC(-aaa- --)GAGAU|U CC-CUGAGUA GC(GGCGA)G 601 CGA-AAG-GG GA-GAA-GAC CAAAccacau -u-------- -----(-uuu -)-------- 661 -----aaugu gggguuguag ggucgauaa- ---------- ---------- ---------- 721 ---------- caugggaucu uaaguuuu-a guuGAAuacu u-c(u-ggaa a)g-uagaac 781 |g(aua)caG GG(UGAUAGU )CCCGU-Aga c-gaaaaaac aa-gagacu- ---------- 841 ---------- --cuauucga uaccu---GA GUAGGGCUAG A(CACGUG-A AA)CCUAGUC 901 UGAAUCU-GG G-GA(GACCA C)UC-UCC-A AGUCUAA--- -AUACUAGUC AAUGACCUAU 961 AGUG-AAC-C AGUACU(GUG A)-AGGA-AA GGUGAAAA-G AACCCU(ugu ua-)AGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAG-UAGCU UAUAA-G-CG GUCGAAGACC -uau---aac 1081 uuc-----(- ---uuag--) --------ga agucau-GGU UGACGGCGUG CCU(UUU-GC 1141 AU|G)AUGA| -GCCAGGGAG UUAA-GUUA- AACGGC-GAG GUUAAGGGA( ucuaca)UUC 1201 C-GGAGCCGA AGC(GAAA-) GCGAGUUU(U AA-AA)GAGC GU-------- ---------- 1261 ---------- ------u-ua G-UCGUUUGA UUUA-GACAC GAAAC-CAA- GUGA-GCUAU 1321 UUAUGAC|CA GGUUGAAGCA UGGG(UAAG) AC-CUUGUGG AGGACCGAAC C-AGUACAU( 1381 -GUUGAAAA) AUGUU|UGG- AUGAG-UUGU GAAUAGGGGU (-GAAAG)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |-~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~-~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS Simkan.ZV1 4759 bp RNA RNA 18-SEP-1997 DEFINITION Simkania sp. ZV1.; . ACCESSION U68460 KEYWORDS . SOURCE Simkania sp. ZV1. ORGANISM Simkania sp. ZV1. REFERENCE 1 (bases 1 to 1351) AUTHORS Everett,K.D. and Andersen,A.A. TITLE gene are phylogenetic markers for Chlamydia spp The ribosomal intergenic spacer and domain I of the 23S rRNA JOURNAL Int. J. Syst. Bacteriol. 47 (2), 461-473 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1351) AUTHORS Everett,K.D.E. and Andersen,A.A. TITLE Direct Submission JOURNAL Submitted (29-AUG-1996) USDA-ARS-NADC, 2300 Dayton Avenue, Ames, IA 50010, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U68460 BASE COUNT 261 a 151 c 244 g 191 t 3912 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ----aaau|- ----UAUUGA UUAAGCUAU- --UAAGAGCU AUUGGUGGAU 121 G|CCUUGG|C AUCGAC|AG| GC-GAUGAAG GA|CGCG(CG UA-CC-)U|- GCG-AUAAGC 181 UUCGGG|-GA GCU(G-GA-U AGA-)AGCAU UG-AAC-CGA AGAUU|UCCG AAUGGG(GGA 241 A)CCC|agug gag-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --uuaguc)- cuccacu-AU UC-CUACCU( 481 GA-AUACA-- UA)GGG-UUG -G-A--AAG- CAAUAC|CU- GCUGAAUU|G A(GACA)UCU 541 AAGUA-GGCA GAGGAAAAGA AAUC(-aauu --)GAGAU|U CC-CGUAGUA GC(GGCGA)G 601 CGA-AGU-GG GA-AGA-GCC CAAAccg-aa -a-------- -----(auuu a)-------- 661 -----uuuuc gggguuguag gacuaguca- ---------- ---------- ---------- 721 ---------- uaaagcuuaa guggacuu-a gcaUAAu-ca u-c(u-ggga a)g-gugagc 781 |g(aua)caG GG(UGAAAGC )CCCGU-Gug c-aaagagaa ag-cuuaagu ---------- 841 ---------- -gaga-uuag caccu---GA GUAGGGCCGG A(CACGUG-A AA)CCCGGUC 901 UGAAUCU-GG G-GA(GACCA C)UC-UCC-A AGGCUAA--- -AUACUCGUC GAUGACCGAU 961 AGUG-CAC-A AGUACA(GUG A)-UGGA-AA GGUGAAAA-G AACCCC(ugu ua-)GGGGA- 1021 -GUGAAA-UA GAAUCUGAAA CCAG-UAGCU UACAA-G-CG GUCAGAGGCC -uau---auc 1081 ccu-----(- ---uuu---) --------ag ggaaau-GGC UGAUGGCGUG CCU(UUU-GC 1141 AU|G)AUGA| -GCCAGCGAG UUAA-GUUA- UACGGC-UAG GUUAAGGAA( uauacg)UUC 1201 C-GGAGCCGG AGU(GAAA-) GCGAGCGU(U AA-UA)GCGC UU-------- ---------- 1261 ---------- ------a-ca G-UCGUAUGA UUUA-GACAC GAAAC-CAA- GUGA-UCUAU 1321 CCAUGAC|CA GGAUGAAGCA CGAG(UAAC) AU-CGUGUGA AGGUCCGAAC U-AGUGUAU( 1381 -GUUGAAAA) AUACU|UGG- AUGAG-UUGU GGAUAGGGGU (-GAAAG)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |-~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~-~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS Pir.marina 4759 bp RNA RNA 09-JAN-1988 DEFINITION Pirellula marina. ACCESSION No information KEYWORDS No information. SOURCE Pirellula marina. ORGANISM Pirellula marina. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 4759) Corresponding GenBank entry: X07408 published:Liesack, Hopfl, Stackebrandt NAR 16:5194 (1988) BASE COUNT 756 a 629 c 886 g 614 t 1874 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- ---UUUGUGG UCAAGCUAU- --UAAGGGCG UAUGGGGGAU 121 G|UCUUGG|U AUCAGA|AG| GC-GAUGAAG GG|CGUG(GA AG-AC-)U|- GCG-AUAAGC 181 CUGGGG|-GA GUU(G-UCAA ACG-)AACGU UG-AUC-CCG GGAUU|CCUG AAU---(--- 241 -)---|---- ----(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --------)- --------Ga cu-ugcguu( 481 GA-AUACA-- UA)ggc-gua -A-G--uGG- C-uaAC|CC- AGAGAACU|G A(AACA)UCU 541 CAGUA-CCUG GAGGAAGAGA AAGA(-AAAC --)UCGAU|U UC-GUCAGUA GC(GGCGA)G 601 CGA-AAG-CG AA-AUA-GCC CAAAccgugg -gga------ -----(uuu- -)-------- 661 ---uccucac gggguuguag ggucucucac aug------- ---------- ---------- 721 -------gga guuacaaagc aaucugcu-a guuGAAc-ga c-a(u-ggaa a)g-gucggc 781 |c(aca)gaC GG(UGACAGC )CCGGU-Aaa c-gaaagcgg aauugccuc- ---------- 841 ---------- -ccga-gaga uaccu---GA GUAGGUUCAG G(CACGUG-A AA)CCUGGAC 901 UGAAUCC-AC G-GG(GACCA U)CC-CGU-A AGGCUAA--- -AUACUCUCU GAUAACCGAU 961 AGCG-AACUC AGUAUG(GCG A)-CUGA-AA GAUGAGAA-G AACCCC(ugu ua-)GGGGA- 1021 -G-GUAU-GU GAACCUGAAA CCAU-ACGCU UACAA-G-CG GUCGGAGCCC --GA------ 1081 --------(- ---uua---) ---------- ----UU-GGG UGACGGCGUG CCU(UUU-GC 1141 AU|A)AUGA| -UCCGGCGAG UUAC-GGUC- UGCGGC--AG GUUAAAGuc( -uuacg)gaC 1201 U-GAAGCCAG AGG(GAAA-) CCGAGUCU(G AA-UA)GGGC GU-------- ---------- 1261 ---------- --------ua G-UCGUAGGC UGUA-GACGC GAAAC-CAA- GUGA-UCUAC 1321 CCAUGAG|CA GGUUGAAGCG CGGG(UUAU) AC-CGCGUGG AGGACCGAAC C-CACUUGG( 1381 -GUUGAAAA) CCGAG|GGG- AUGAC-UUGU GGGGAGGAGU (-GAAAG)UC UAAUCAAACU 1441 UGGAGAUAUC UCGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-CUUG AGCca--cu| 1501 -acg|CACCG G|GGGUAG|A GAGACUGA-A UCGAUUUGGG |-GCCCC(uu ccc)GGGGUA 1561 CCCUGUCGGA -CCAAACUCC GAA-UA-|CC G-G-G-G--- cgac---ua| UCU-CAGGAG 1621 UCAGUC--CA C-GAGG(GAU AAG)CUUCGU -GGUC-GAGA GGG(-AAACA A-)CCCAGAC 1681 CGUCUGUUAA G-GU|CCCG- AAG-A-GACG -C-UCA-GUC ------ACUA AGGAGGUU-G 1741 AAUUACUGU- GACAACCAGG AUGUUGGC(U UAGAAGCA)G CCAC-CAU|U (UAA)A|AAG 1801 UGC(GUAACA )GC|UUACUG GU-----CGA GU-AAU-UC- -UGC|GCCGA UAAU-G-AU- 1861 CGGGAGU-AA GCGUC-U|C| ACCGAAGCA| GCGG|ac--- -------(ga -aa------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -------gu- GG-UAGGAGA G|-----CGC 2221 C-GAUAGU-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --C-AGAU-A 2341 CGAGCCG-U- A-CC(-GAAA -)GGA--GCG GUGU|UGGGG CUAUCGGGUG AUUAUGC-CG 2401 GA|AUG-AGU A--ACGAUUA AACAGG(UGA GAAU)CCUGU U|CGCC-GAA UACCUAAGGU 2461 UUCCUG-GGG AAGG-(CAAU U)CC|G-CCC AGGGUUAGC| CGG|U-GCCU UAGUCGAGGC 2521 C(GAAA)-G- GCGU-AGACG AUGG-AUAGC AGG-(UU-AA UAUU)C-CUG C|GC|ua-g- 2581 aa-cgu-ugg ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -----accga u------gga g--gga-cgg cguccgaaa- ggug-au|-c g-ggc(ug-- 2761 guggaa-ca- --)gc-ccg- -|uga----- ---------- ---uuugcag caaga----- 2821 -ugggga-ga uugg(aa-aa -u-)cc|g-- -cucccgg-- ---------- aauu----ca 2881 agcugucg|- -a-|------ ------ucug a(cucaa-a) uu-ga----- --------gg 2941 uaaucau-cg guag-ga--| cguccaagaa a-agcuuc-u aagggau--- ------ga-a 3001 ggcguu--uu a|A|CCGUAC UA-AAACU(G ACACA)GG|U AG-GUAGGU- C-(GAGUA)G 3061 ACCAAGGCGC ||UCGGGAGA ACAGUGGUU- ---------- ----AAGGAA CUCUGCAAAA 3121 UGACCCCGUA AG(-UUCG)C GAUAAGGGGU |GCCCCU--- -gac------ --------gg 3181 u(-gcaa-)g cu-------- ------guu- --GGGGG-C| C(ACA)GAAA AUCGGCU-CU 3241 GG|CGACU-- ---GU(UUAU CAAAA)ACAC AGGACCCUG| CUAACUC(GC AA------)G 3301 AGGAUGU-AU AGGGUCUGA- CGCCUGCCCG GU|GCCG-GU A-GGUUAAGG AAGAGG---- 3361 GU-------- (G-CAA)--- --------GC ------UCGC GACCGAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUG )ACGGUC|C( UAA)GGUAGC G-AAGUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCAUGA AAGGCGUAAC GA-CUGGAGC ACUGUCUCAA UCACUGACCC 3541 G|GUGAAAUU |GUAGUUG-U GG(UGAAGAU G)CCACAUAC CCGCAGU-UA GACGGAAAGA 3601 CCCCGUGA|A CCU-UUACUG U|AGGCUGAU AUU|GGUCUG AGAUAUGUUC UGUGUAGGAU 3661 AGGUGGGAGG CUUUGAUC-- UCGGCGC(GC CA)GCGUCGG AGGAGCCGUC -C-UUGAAAU 3721 ACCACC|CUG A-AUAUGUUU UAG-CUCUAA -CCC-UGAAU AUCCG(-uga -auc)-CGGA 3781 CAGGG-AACA GUGUCAGUUG GG-CAGUUUG ACUG(GGG)C GGUC|UCCUC C(CAA-AGAG 3841 UAAC)GGAGG A|G|U|GCAA UGGUACCC|U CAGCCUGG(U UGGCCA)UCA GGCAAA-GA| 3901 GC(G|CAAUG )GUAAAAGGG UGCUUGACUG CGAGAC(UUA UCG)GUCGAG CAGGUAC(GA 3961 AA)GU-AGGU |CAUAGUGAU CCGGUAGUCC CG(UAUGGA) AGG|GCUAUC GCUCAUC|AG 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UUA--UCGCA UCCGAGC(G- UCC-AUA)GC 4081 GGCGAUG-CG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGGU(GAAG 4141 A---A)-GCU CCCAAGGGU| UCGGC(UGUU C)GC-CGAUU AAAGUGGUAC G-UGAGCUGG 4201 GUUCA-GACC |GUC(GUGA) -GACAGGU-C GGU-CCCUAU -CU|GCUGUG G-G|CG-UAC 4261 GAAUUUU|GA -|GGAGGUU- CUU------- -------CUU (UAGUAC(GA GA)GGAUU)U 4321 GGAAGG|ACG ACCCUCUGGU GUCCCAGU|U GUCAU(GC-C A-)GUGGCA- CGGCUGGAUA 4381 GCU-AUGGUC GGAAAGGAUA AACGCU(GAA AGCAUCUA)A GCGUGAAGCC CGCUCC|AAG 4441 AUUAGAAUUC G|UA|AGCAC -(-UUUA-)- GUGCG--A-- GAGU|-CC|C CUGG-(AAGA 4501 CG-A)CCAGG -UUGAUAG|G CUGG|AUGUG -UAAGCACA- -(GUAA-)-- UGUGU|UC-A 4561 GCUA|A|CCA GUACUAA-C- GGACGA-aA| GCUUGA-CCA CAUA----|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS CYANOBACTE 4759 bp RNA RNA 17-JAN-1993 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 4759 others ORIGIN 1 -x~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~-)~|- ~~~~~~~~~~ 181 ~~~~~~|-~~ ~~~(~-~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~--- ---------- ---------- 301 -----~~~~~ ~~~~~~~~~~ ~~~~~~---- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- -----~-~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~|~ ~~-~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---- 721 ---~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~)~~~~~-~ 781 |~(~~~)~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~-~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~-- -~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ -~~~-~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| -~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 -~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 -~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~-~ ~~~~~~~~~~ |-~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~-~~~~| ~~~~~~~~~~ 1621 ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~-~~~~~ ~-~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~-~~~ ~----~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~-~- -~~-|~~~~~ ~~~~-~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~|-----~~~ 2221 ~-~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~- ~-~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 2401 ~~|~~~~-~~ ~-~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~-~~ ~~~~~~-~~~ ~~~~|~~~~- 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~------~~~ ~~--~~-~~~ ~~~~~~~~~- ~~~~-~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ---------- --~~~~~~~~ ~~~~~~~~-- 2821 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~----~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 --~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~-~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~- ---~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~---~~~~~ 3301 ~~~~~~~~-~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~-~~ ~-~~-~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~( ~~~)~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ 3721 ~~~~~~|~~~ ~~~-~~~~~~ ~~~~~-~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~-~~-~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~|~|~|~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~---~ ~~~~~~-~~~ 3901 ~|~~(~|~~~ ~~)~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~-~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~~~|~~~~ ~~~~~~~~~| 4021 ~~~~~~~~~~ ~~~~~|~~~~ |~~~~~~-~| ~~~~~--~~~ ~~~~~~~~~( ~~~~~~~~~) 4081 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~|~~~~|~~~ ~~~~~~~~~| ~~~~~(~~~~ 4141 ~~~~~--)-~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ -~~~~~~|~~ ~~~~~~~|~~ 4261 ~~~~~~~~~~ -|~-|~~~~~ -~~~~~~--- ---------- -~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4381 ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 |~~~~~~~~~ ~~~~~|~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~|~~~~~-~ 4501 ~~~~~~-~~~ ~~~~~~~~~~ ~~|~~~~~|~ ~~~~~-~~~~ ~~~~~~~~~~ ~--~~~~~~| 4561 ~~~~|~~~-~ |~~~~~~~~~ ~~~~~~~~-- ~~~|~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~||||| // LOCUS Syn.PCC.1 4759 bp RNA RNA 11-JAN-191 DEFINITION Synechococcus PCC6301 subsp. was Anacystis nidulans. ACCESSION No information KEYWORDS No information. SOURCE Synechococcus PCC6301 subsp. was Anacystis nidulans. ORGANISM Synechococcus PCC6301. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X00512 LOCUS ANIRGG 3282 bp ds-DNA BCT 01-AUG-1985 DEFINITION A. nidulans 23S rRNA gene, complete. ACCESSION X00512 KEYWORDS 23S ribosomal RNA; 5S ribosomal RNA; ribosomal RNA; transfer RNA; transfer RNA-Ala. SOURCE A. nidulans DNA. ORGANISM Anacystis nidulans Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. REFERENCE 1 (bases 1 to 3282) AUTHORS Douglas,S.E. and Doolittle,W.F. TITLE Complete nucleotide sequence of the 23S rRNA gene of the Cyanobacterium, Anacystis nidulans JOURNAL Nucleic Acids Res. 12, 3373-3386 (1984) STANDARD full staff_review FEATURES Location/Qualifiers tRNA <1..43 /note="Ala-tRNA" rRNA 251..3126 /note="23S rRNA" rRNA 3196..>3282 /note="5S rRNA" BASE COUNT 893 a 744 c 1002 g 643 t ORIGIN 25 bp upstream of TaqI site. BASE COUNT 773 a 647 c 913 g 543 t 1883 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UCAAGCUAC- --GAAGGGCU UACGGUGGAU 121 A|CCUAGG|C ACACAG|AG| GC-GAAGAAG GA|CGUG(GC UA-CC-)G|- ACG-AUACGC 181 CUCGGG|-GA GCU(G-GA-A GCA-)AGCAU UG-AUC-CGA GGAUU|UCCG AAUGGG(GCA 241 A)CCC|---- ----(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- -ca--ugu)- --------AC GG-CCACCU( 481 GA-AUCCA-- UA)GGG-UGG -C-C--Gcga c-gaAC|CC- GGCGAAUU|G A(AACA)UCU 541 UAGUA-GCCG GAGGAAGAGA AAAC(-AAAA --)GUGAU|U CC-CUCAGUA GC(GGCGA)G 601 CGA-ACG-GG GA-CCA-GCC UAAAccaaac -uc------- -----(cacg -)-------- 661 ----gaguuu ggggucgugg gacagcaa-- ---------- ---------- ---------- 721 -----ugu-- ----ggacug ugaauguu-a gacGAAg-ca g-c(u--gaa a)a-cugcac 781 |c(aga)gaA GG(UGAAAGU )CCUGU-Agu c-gaaaauug aaacagccua ---------- 841 ---------- -----gcuga auccc---GA GUAGCACGGA G(CACGUG-A AA)UUCCGUG 901 UGAAUCC-GC G-AG(GACCA C)CU-CGU-A AGGCUAA--- -AUACUCCUG UGUGACCGAU 961 AGUG-AAC-C AGUACC(GCG A)-GGGA-AA GGUGAAAA-G AACCCC(gg- aa-)GGGGA- 1021 -GUGAAA-UA GAACAUGAAA CCGU-GAGCU UACAA-G-CA GUCGGAGCCC --Ga------ 1081 --------(- ---uuca--) ---------- ----aC-GGG UGACGGCGUG CCU(GUU-GA 1141 AG|A)AUGA| -GCCGGCGAC UUAU-AGGC- ACUGGC--AG GUUAAggcg( -gaaa-)ugc 1201 c-GAAGCCAA AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC Ga-------- ---------- 1261 ---------- --------ua G-UCAGUGUU UAUA-GACCC GAACC-CGG- GUGA-UCUAA 1321 CCAUGGC|CA GGAUGAAGCU UGGG(UAAC) AC-CAAGUGG AGGUCCGAAC C-GACCGAU( 1381 -GUUGAAAA) AUCGG|CGG- AUGAG-CUGU GGUUAGGGGU (-GAAAU)GC CAAUCGAACC 1441 CGGAGCUAGC UGGUUCUCCC CGAAAUACGU (-UGAG)GCG UAGC|-GGUA UGGau---u| 1501 -aua|GCGGU G|GGGUAG|A GC-ACUGA-U UCGGUGC-GG |-GCUGC(ga ga-)GCGGUA 1561 CCAAAUCGAG -UCAAACUCC GAA-UA-|CG C-C-G-U--g uac-----a| CCA-UGCCAG 1621 UCAGAC--UG U-GGGG(GAU AAG)CUCCAU -GGUC-AAGA GGG(-AAACA G-)CCCAGAC 1681 CACCAGCUAA G-GU|CCUC- AAAUC-AGAA -C-UUA-GUG ------AUAA AGGAGGUG-G 1741 GAGUGCAUA- GACAACCAGG AGGUUUGC(C UAGAAGCA)G CCAU-CCU|U (AAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CAA GC-GCU-CC- -UGC|GCCGA AAAU-G-AA- 1861 CGGGGCU-AA GUUCU-G|U| ACCGAAGCU| GUGG|aauug c------(ug u--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ---gcaauu- GG-UAGGGGA G|-----CGU 2221 U-CCG-UCG- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-AGGG-U 2341 GAAGCGG-U- A-GC(-GGAA -)GCA--GCC GUGG|ACGAA A-CGGAAGUG AGAAUGU-CG 2401 GC|UUG-AGU A--GCGAAAA CAUGGG(UGA GAAU)CCCAU G|CCCC-GAA AUCCCAAGGG 2461 UUCCUC-CGG AAGG-(CUCG U)CC|G-CGG AGGGUUAGU| CAG|G-UCCU AAGGCGAGGC 2521 A(GAAG)-U- GCGU-AGUCG AUGG-ACAAC AGG-(UU-AA UAUU)C-CUG U|AC|cg-a- 2581 uu-uug-gau ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ----ugugc- -------aga g--gga-cgg agaaggcua- ggcc-a-|-g c-agg(-aug 2761 uugguua--- --)cc-ugu- -|ccaa---- ---------- ---guguccg aggc------ 2821 guugagg-ag c-gg(cg-aa -a-)ac|g-- cuccg----- ---------- agcu-gaggc 2881 gug-agug|c ga-|------ ------cccg c(-uacg--) gcggg----- ------gaag 2941 --ugguu-ga uguc-aag-| cuuccaagaa a-agcucu-a aacacguu-- ------aa-u 3001 ccaaaa--uu g|C|CUGUAC CCUAAACC(G ACACA)GG|U GG-GACGGU- A-(GAGUA)U 3061 ACCAAGGGGC ||GCGAGGUA ACUCUCUCU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACUCCGUA AC(-UUCG)G GAGAAGGAGU |GCCCAC--- ---------- ---------- 3181 c(-uaaga)c ---------- ---------- --GUGGG-U| C(GCA)GUGA AGAGGCC-CA 3241 GG|CGACU-- ---GU(UUAC CAAAA)ACAC AGGUCUCCG| CUAAGUC(GU AA------)G 3301 ACGAUGU-AU GGGGGCUGA- CGCCUGCCCA GU|GCCG-GA A-GGUUAAGG AAGCUGGUCA 3361 GC-------- (G-CAA)--- --------GU GA-AGCUGGC GACCGAAGCC |CCGGUGAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGUAAC GA-UCUGGGC GCUGUCUCAG AGAGAGGCUC 3541 G|GCGAAAUA |GGAGUGU-C UG(UGAAGAU A)CGGACUAC CUGCACC-CG GACAGAAAGA 3601 CCCUAUGA|A GCU-UUACUG U|AGCUUGGU AUU|GGCUUC GGGCUUUGAC UGCGCAGGAU 3661 AGGUGGGAGG CUAUGAGA-- CUUUCCU(UG UG)GGGGAAG UGGAGCCAAC -G-GUGAGAU 3721 ACCACU|CUG U-CAAAGCUA GAA-GUCUAA -CUU-UG--- AGCCG(--UU -AUC)-CGGC 3781 CGAAg---cA GUAUCAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAGG 3841 UAAC)GGAGG C|G|C|GCAA AGGUUCCC|U CAGGCUGG(U UGGAAA)UCA GCCGAC-GA| 3901 GU(G|CAAAG )GCAUAAGGG AGCUUGACUG CAAGAC(CUA CAA)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGC |CUUAGUGAU CCGACGGUUC UG(AGUGGA) AGG|GCCGUC GCUCAAC|GG 4021 AUAAAAGUUA CUC|UAGG|G AUAACAG|GC UGA--UCUCC UCCAAGA(G- UUC-ACA)UC 4081 GACGAGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AACC|UG GGGCU(GAAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-UGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCAUAU -CC|GGUGCA G-G|CG-UAA 4261 GAGUAUU|GA -|GAGGAUU- UCU------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGAGGA|ACG CACCGCUGGU GUACCAGU|U AUCGU(GC-C A-)ACGGUAa acGCUGGGUA 4381 GCU-ACGUGU GGAGUGGAUA ACCGCU(GAA AGCAUCUA)A GUGGGAAGCC CACCUC|AAG 4441 AUGAGUACUC U|CA|UGGC- -(-AUAA-)- -GCCA--GU- AAGG|-UC|A CGGG-(UAGA 4501 AC-A)CCCGU -U-AAUAG|G CGCU|AUGUG -GAAGUUCA- -(GCAA-)-- UGGAU|GA-A 4561 GCUG|A|GGC GUACUAAUA- GACCGA-GG| GCUUGA-CCU C-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS Syn.PCC.2 4759 bp RNA RNA 11-JAN-191 DEFINITION Synechococcus PCC6301 subsp. was Anacystis nidulans. ACCESSION No information KEYWORDS No information. SOURCE Synechococcus PCC6301 subsp. was Anacystis nidulans. ORGANISM Synechococcus PCC6301. REFERENCE 1 (bases 1 to 1351) AUTHORS Kumano,M., Tomioka,N. and Sugiura,M. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X00343 LOCUS ANIRGGX 3326 bp ds-DNA BCT 03-SEP-1985 DEFINITION A. nidulans 23S and 5S rRNA genes, complete. ACCESSION X00343 KEYWORDS 23S ribosomal RNA; 5S ribosomal RNA; ribosomal RNA. SOURCE A. nidulans DNA, clone pAN4. ORGANISM Anacystis nidulans Prokaryota; Bacteria; Gracilicutes; Oxyphotobacteria; Cyanobacteria. REFERENCE 1 (bases 1 to 2991) AUTHORS Kumano,M., Tomioka,N. and Sugiura,M. TITLE The complete nucleotide sequence of a 23S rRNA gene from a blue-green alga, Anacystis nidulans JOURNAL Gene 24, 219-225 (1983) STANDARD full staff_review REFERENCE 2 (bases 2992 to 3326) AUTHORS Douglas,S.E. and Doolittle,W.F. TITLE Nucleotide sequence of the 5S rRNA gene and flanking regions in the cyanobacterium, Anacystis nidulans JOURNAL FEBS Lett. 166, 307-310 (1984) STANDARD full staff_review COMMENT Data [FEBS Lett. 166, 307-310 (1984)] kindly reviewed (04-MAY-1984) by W.F. Doolittle. EMBL features not translated to GenBank features: key from to description SITE 2961 3030 spacer region SITE 3166 3207 stem-loop structure typical for rho-independent termination signals SITE 3244 3298 stem-loop structure FEATURES Location/Qualifiers rRNA 91..2959 /note="23S rRNA" rRNA 3029..3148 /note="5S rRNA" BASE COUNT 895 a 769 c 1005 g 657 t ORIGIN 53 bp upstream of HinfI site. BASE COUNT 772 a 644 c 911 g 542 t 1890 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UCAAGCUAC- --GAAGGGCU UACGGUGGAU 121 A|CCUAGG|C ACACAG|AG| GC-GAAGAAG GA|CGUG(GC UA-CC-)G|- ACG-AUACGC 181 CUCGGG|-GA GCU(G-GA-A GCA-)AGCAU UG-AUC-CGA GGAUU|UCCG AAUGGG(GCA 241 A)CCC|---- ----(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- -ca--ugu)- --------AC GG-CCACCU( 481 GA-AUCCA-- UA)GGG-UGG -Cgc--gAG- C-gaAC|CC- GGCGAAUU|G A(AACA)UCU 541 UAGUA-GCCG GAGGAAGAGA AAAC(-AAAA --)GUGAU|U CC-CUCAGUA GC(GGCGA)G 601 CGA-ACG-GG GA-CCA-GCC UAAAccaaac -uc------- -----(cacg -)-------- 661 ----gaguuu ggggucgugg gacagcaa-- ---------- ---------- ---------- 721 -----ugu-- ----ggacug ugaauguu-a gacGAAg-ca g-c(u--gaa a)a-cugcac 781 |c(aga)gaA GG(UGAAAGU )CCUGU-Agu c-gaaaauug aaacagccua ---------- 841 ---------- -----gcuga auccc---GA GUAGCACGGA G(CACGUG-A AA)UUCCGUG 901 UGAAUCC-GC G-AG(GACCA C)CU-CGU-A AGGCUAA--- -AUACUCCUG UGUGACCGAU 961 AGUG-AAC-C AGUACC(GCG A)-GGGA-AA GGUGAAAA-G AACCCC(gg- aa-)GGGGA- 1021 -GUGAAA-UA GAACAUGAAA CCGU-GAGCU UACAA-G-CA GUCGGAGCCC --Ga------ 1081 --------(- ---uuca--) ---------- ----aC-GGG UGACGGCGUG CCU(GUU-GA 1141 AG|A)AUGA| -GCCGGCGAC UUAU-AGGC- ACUGGC--AG GUUAAggcg( -gaaa-)ugc 1201 c-GAAGCCAA AGC(GAAA-) GCGAGUCU(G AA-UA)GGCC Ga-------- ---------- 1261 ---------- --------ua G-UCAGUGUU UAUA-GACCC GAACC-CGG- GUGA-UCUAA 1321 CCAUGGC|CA GGAUGAAGCU UGGG(UAAC) AC-CAAGUGG AGGUCCGAAC C-GACCGAU( 1381 -GUUGAAAA) AUCGG|CGG- AUGAG-CUGU GGUUAGGGGU (-GAAAU)GC CAAUCGAACC 1441 CGGAGCUAGC UGGUUCUCCC CGAAAUACGU (-UGAG)GCG UAGC|-GGUA UGGau---u| 1501 -aua|GCGGU G|GGGUAG|A GC-ACUGA-U UCGGUGC-GG |-GCUGC(ga ga-)GCGGUA 1561 CCAAAUCGAG -UCAAACUCC GAA-UA-|CG C-C-G-U--g uac-----a| CCA-UGCCAG 1621 UCAGAC--UG U-GGGG(GAU AAG)CUCCAU -GGUC-AAGA GGG(-AAACA G-)CCCAGAC 1681 CACCAGCUAA G-GU|CCUC- AAAUC-AGAA -C-UUA-GUG ------AUAA AGGAGGUG-G 1741 GAGUGCAUA- GACAACCAGG AGGUUUGC(C UAGAAGCA)G CCAU-CCU|U (AAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CAA GC-GCU-CC- -UGC|GCCGA AAAU-G-AA- 1861 CGGGGCU-AA GUUCU-G|U| ACCGAAGCU| GUGG|aauug c------(ug u--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ---gcaauu- GG-UAGGGGA G|-----CGU 2221 U-CCG-UCG- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-AGGG-U 2341 GAAGCGG-U- A-GC(-GGAA -)GCA--GCC GUGG|ACGAA A-CGGAAGUG AGAAUGU-CG 2401 GC|UUG-AGU A--GCGAAAA CAUGGG(UGA GAAU)CCCAU G|CCCC-GAA AUCCCAAGGG 2461 UUCCUC-CGG AAGG-(CUCG U)CC|G-CGG AGGGUUAGU| CAG|G-UCCU AAGGCGAGGC 2521 A(GAAG)-U- GCGU-AGUCG AUGG-ACAAC AGG-(UU-AA UAUU)C-CUG U|AC|cg-a- 2581 uu-uug-gau ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ----ugugc- -------aga g--gga-cgg agaaggcua- ggcc-a-|-g c-agg(-aug 2761 uugguua--- --)cc-ugu- -|ccaa---- ---------- ---guguccg aggc------ 2821 guugagg-ag c-gg(cg-aa -a-)ac|g-- cuccg----- ---------- agcu-gaggc 2881 gug-agug|c ga-|------ -------ccg c(-uacg--) gcggg----- ------gaag 2941 --ugguu-ga uguc-aag-| cuuccaagaa a-agcucu-a aacacguu-- ------aa-u 3001 ccaaaa--uu g|C|CUGUAC CCUAAACC(G ACACA)GG|U GG-GACGGU- A-(GAGUA)U 3061 ACCAAGGGGC ||GCGAGGUA ACUCUCUCU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACUCCGUA AC(-UUCG)G GAGAAGGAGU |GCCCAC--- ---------- ---------- 3181 c(-uaaga)c ---------- ---------- --GUGGG-U| C(GCA)GUGA AGAGGCC-CA 3241 GG|CGACU-- ---GU(UUAC CAAAA)ACAC AGGUCUCCG| CUAAGUC(GU AA------)G 3301 ACGAUGU-AU GGGGGCUGA- CGCCUGCCCA GU|GCCG-GA A-GGUUAAGG AAGCUGGUCA 3361 GC-------- (G-CAA)--- --------GU GA-AGCUGGC GACCGAAGCC |CCGGUGAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGUAAC GA-UCUGGGC GCUGUCUCAG AGAGAGGCUC 3541 G|GCGAAAUA |GGAGUGU-C UG(UGAAGAU A)CGGACUAC CUGCACC-CG GACAGAAAGA 3601 CCCUAUGA|A GCU-UUACUG U|AGCUUGGU AUU|GGCUUC GGGCUUUGAC UGCGCAGGAU 3661 AGGUGGGAGG CUAUGAGA-- CUUUCCU(UG UG)GGGGAAG UGGAGCCAAC -G-GUGAGAU 3721 ACCACU|CUG U-CAAAGCUA GAA-GUCUAA -CUU-UG--- AGCCG(--UU -AUC)-CGGC 3781 -GAAg--gcA GUAUCAGGUG GG-CAGUUUG ACUG(G--)C GG-C|GCCUC C(UAA-AAGG 3841 UAAC)GGAGG C|G|C|GCAA AGGUUCCC|U CAGGCUGG(U UGGAAA)UCA GCCGAC-GA| 3901 GU(G|CAAAG )GCAUAAGGG AGCUUGACUG CAAGAC(CUA CAA)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGC |CUUAGUGAU CCGACGGUUC UG(AGUGGA) AGG|GCCGUC GCUCAAC|GG 4021 AUAAAAGUUA CUC|UAGG|G AUAACAG|GC UGA--UCUCC UCCAAGA(G- UUC-ACA)UC 4081 GACGAGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AACC|UG GGGCU(GAAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-UGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCAUAU -CC|GGUGCA G-G|CG-UAA 4261 GAGUAUU|GA -|GAGGAUU- UCU------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGAAGG|ACG CACCGCUGGU GUACCAGU|U AUCGU(GC-C A-)ACG-UAa acGCUGGGUA 4381 GCU-ACGUGU GGAGUGGAUA ACCGCU(GAA AGCAUCUA)A GUGGGAAGCC CA-CUC|AAG 4441 AUGAGUACUC U|CA|UGGC- -(-AUAA-)- -GCC---GU- AAGG|-UC|A CGGG-(UAGA 4501 AC-A)CCCGU -U-AAUAG|G CGCU|AUGUG -GAAGUUCA- -(GCAA-)-- UGGAU|GA-A 4561 GCUG|A|GGC GUACUAAUA- GACCGA-GG| GCUUGA-CCU C-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS Synec.6803 4759 bp RNA RNA 11-JAN-191 DEFINITION Synechocystis PCC6803 subsp. slr0388 genes. ACCESSION No information KEYWORDS No information. SOURCE Synechocystis PCC6803 subsp. slr0388 genes. ORGANISM Synechocystis PCC6803. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: D64000 LOCUS SYCSLRB 146271 bp DNA BCT 21-NOV-1995 DEFINITION Synechocystis sp. slr0388 genes. ACCESSION D64000 NID g1001484 KEYWORDS 16S rRNA; 23S rRNA; 5S rRNA; carboxyl-terminal processing protease; cytochrome b6; cytochrome b6-f complex subunit 4; ferredoxin; glucose transport protein; hypothetical protein; plastocyanin precursor; ribulose bisphosphate carboxylase large subunit; ribulose bisphosphate carboxylase small subunit; tRNA-Ala; tRNA-Gly; tRNA-Ile; tRNA-Ser. SOURCE Synechocystis sp. (strain PCC6803, ) DNA. ORGANISM Synechocystis sp. Eubacteria; Cyanobacteria; Chroococcales; Synechocystis. REFERENCE 1 (bases 1 to 146271) AUTHORS Kaneko,T., Tanaka,A., Sato,S., Kotani,H., Sazuka,T., Miyajima,N., Sugiura,M. and Tabata,S. TITLE Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. I. sequence features in the 1Mb region from map positions 64% to 92% of the genome JOURNAL DNA Res. 2, 153-166 (1995) COMMENT Submitted (30-Aug-1995) to DDBJ by: Satoshi Tabata Dept. of Gene Structure 2 Kazusa DNA Research Institute 1532-3, Yanauchino Kisarazu, Chiba 292 Japan Phone: 0438-52-3933 Email: tabata@kazusa.or.jp Fax: 0438-52-3934. NCBI gi: 1001484 FEATURES Location/Qualifiers source 1..146271 /organism="Synechocystis sp." /strain="PCC6803" /sequenced_mol="DNA" rRNA complement(55920..56038) /product="5S rRNA" rRNA complement(56111..58993) /product="23S rRNA" tRNA complement(59243..59316) /product="tRNA-Ile" rRNA complement(59459..60947) /product="16S rRNA" BASE COUNT 37781 a 34838 c 34907 g 38745 t ORIGIN BASE COUNT 817 a 601 c 899 g 569 t 1873 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- -------aGG UCAAGCUAC- --AAAGGGCU AACGGUGGAU 121 A|CCUUGG|C ACACAG|AG| GC-GAAGAAG GA|CGUG(GU UA-CC-)G|- ACG-AAACGC 181 UUCGGG|-GA GCU(G-GA-A ACA-)AGCAU UG-AUC-CGG AGGUG|UCCG AAUGGG(GCA 241 A)CCC|---- ----(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --aaguga)- --------AC UA-CCCGCU( 481 GA-AUAAAA- UA)GGC-GGG -aga--gAG- C-aaAC|CU- AGUGAACU|G A(AACA)UCU 541 UAGUA-GCUA GAGGAAAAGA AAAC(-AAAA --)GUGAU|U CU-CCAAGUA GC(GGCGA)G 601 CGA-ACG-GG GA-ACA-GCC UAAAccaauc -uu------- -----(uucg -)-------- 661 ----aagauu ggggucgugg gacagcaa-- ---------- ---------- ---------- 721 -----cgu-- ----ggacug aguagauu-a gacGAAg-ca g-c(u--gaa a)a-cugcac 781 |c(aga)ggA GG(UGAAAGU )CCUGU-Agu c-gaaaauug aaucagccua ---------- 841 ---------- -----gcugu auccc---GA GUAGGUCGGA G(CUCGUG-G AA)UUCCGAU 901 UGAAUCA-GC C-GG(GACCA C)CC-GGU-A AGGCUAA--- -AUACUACUG UGUGACCGAU 961 AGCG-UAA-- AGUACC(GCG A)-GGGA-AA GGUGAAAA-G AACCCC(GU- uga)GGGGA- 1021 -GUGAAA-UA GAACAUGAAA CCGU-UAGCC UACAA-G-CA AUGGGAGCUC --g------- 1081 --------(- --auuaaa-) ---------- -----c-gaG UGACCGUGUG CCU(GUU-GA 1141 AG|A)AUGA| -GCCGGCGAC UUAC-AGGU- UGUGGC--AG GUUAAggug( -uguug)cac 1201 c-GAAGCCAA AGU(GAAA-) GCGAGCCU(G AA-UA)GGGC GU-------- ---------- 1261 ---------- --------ua G-UCACAAUU UGUA-GACCC GAACC-CGG- GUGA-UCUAA 1321 CCAUGGC|CA GGAUGAAGCU UAGG(UAAC) AC-UAAGUGG AGGUCCGAAC C-GACUAAU( 1381 -GUUGAAAA) AUUAG|CGG- AUGAG-CUGU GGUUAGGGGU (-GAAAU)GC CAAUCGAACC 1441 CGGAGCUAGC UGGUUCUCCC CGAAAUGUGU (-UUAG)GCG CAGC|-GGUU GUAaa--gu| 1501 -caa|CUUGG G|GGGUAA|A GC-ACUGU-U UCGCUGC-GG |-GCGGC(ga ga-)GCUGUA 1561 CCAAAGUGAG -GCAAACUCA GAA-UA-|CC C-A-A-G--- aag-----a| aAC-GACCAG 1621 UAAGAC--GG U-GGGG(GAU AAG)CUUCAU -CGUC-GAAA GGG(-AAACA G-)CCCAGAC 1681 CACCAGCUAA G-GU|CCCC- AAAUC-AUCA -C-UAA-GUG ------AGAA AGGAGGUG-G 1741 GAGUGCAUU- GACAACCAGG AGGUUUGC(C UAGAAGCA)G CAAU-CCU|U (AAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CAA GC-GCU-CC- -UGC|GCCGA AAAU-G-AA- 1861 CGGGGCU-AA GUGAU-G|U| ACCGAAGCU| GUGG|acuca -------(ga ua-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ----ugagu- GG-UAGGGGA G|-----CGU 2221 U-CUG-U-A- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-AGGG-U 2341 GAAGCAC-U- A-GC(-GGCA A)GCA--GGU GUGG|ACAGU A-CAGAAGUG AGAAUGU-CG 2401 GC|UUG-AGU A--GCGAAAA UAUGGG(UGA GAAU)CCCAU A|CCCC-GAA AUCCUAAGGG 2461 UUCCUC-CGG AAGG-(CUCG U)CC|G-CGG AGGGUUAGU| CAG|G-ACCU AAGGCGAGGC 2521 C(GAGA)-G- GCGU-AGUCG AUGG-ACAAC CGG-(UC-AA UAUU)C-CGG U|AC|ug-a- 2581 uu-aua-gau ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ----ugugg- -------cgg g--gga-cgg agaaggcua- gugc-a-|-a c-ugg(-aag 2761 uugguua--- --)cc-agu- -|ccaa---- ---------- ---gcauucg aggc------ 2821 gaugaga-ga c-gg(cg-aa -a-)ac|g-- ucuug----- ---------- agca-gaggu 2881 gug-augg|g ga-|------ ------gucu c(-uacg--) gagac----- ------gaag 2941 --ugcau-ga uguc-aag-| cuuccaagaa a-agcccg-a accacguu-- ------aa-u 3001 uuauag--uc a|C|CUGUAC CCGAAACC(G ACACA)GG|U AG-GAAGGU- A-(GAGAA)U 3061 ACUAAGGGGC ||GCGAGGUA ACUCUCUCU- ---------- ----AAGGAA CUCGGCAAAA 3121 UUACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCCUCC--- ---------- ---------- 3181 a(-gcaa-)u ---------- ---------- --GGAGG-U| C(GCA)GUGA AUAGGCC-CA 3241 GG|CGACU-- ---GU(UUAC CAAAA)ACAC AGGUCUCCG| CAAAGUC(GU AA------)G 3301 ACGCAGU-AU GGGGGCUGA- CGCCUGCCCA GU|GCCG-GA A-GGUUAAGG AAGUUGGUCA 3361 GGga------ (G-UAA)--- ------uccU GA-AGCUAGC GACUGAAGCC |CCGGUGAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGUAAC GA-UCUGGGC ACUGUCUCGG AGAGAGGCUC 3541 G|GCGAAAUA |GGAUUGU-C UG(UGAAGAU A)CGGACUCC CUGCACC-UG GACAGAAAGA 3601 CCCUAUGA|A GCU-UUACUG U|AGCUUGGA AUU|GGGUUC GGGCUUUGCU UGCGCAGGAU 3661 AGGUGGGAGA CUAUGAAG-- UUGCUCU(UG UG)GGAGUAA UGGAGUCAAC -G-GUGAGAU 3721 ACCACU|CUG G-UGAGGCUA GAA-UUCUAA -CUUgUu--- -CCCG(--UU -AUC)-CGGG 3781 AGAAG-GACA AUUUCAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAGG 3841 UAAC)GGAGG C|G|C|GCAA AGGUUUCC|U CAGGCUGG(U UGGAAA)UCA GCCGAA-GA| 3901 GU(G|UAAAA )GCAGAAGGA AGCUUGACUG UGAGAC(UGA CAA)GUCAAA CAGGGAC(GA 3961 AA)GU-CGGC |UUUAGUGAU CCGACGGCAC UG(AGUGGA) AGG|GCCGUC GCUCAAC|GG 4021 AUAAAAGUUA CUC|UAGG|G AUAACAG|GC UGA--UCUCC GCCAAGA(G- UUC-ACA)UC 4081 GACGCGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AACC|UG GGGCG(GUAG 4141 U---A)-CGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-UGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCAUAU -CC|GGUGUA G-G|CG-UAA 4261 GAGUAUU|GA -|GAGGAGA- CUU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAAGU|ACG CACCUCUGGU GUACCUGU|U AUCGU(GC-C A-)ACGGUAA ACGCAGGGUA 4381 GCC-AAGUGC GGAGUGGAUA ACCGCU(GAA AGCAUCUA)A GUGGGAAGCC CACCUC|AAG 4441 AUGAGUACUC U|CA|UGGU- -(-GUUAA)- -GCCA--GU- AAGG|-UC|A CGGG-(AAGA 4501 CU-A)CCCGU -U-GAUAG|G CUCU|AGAUG -GAAGUCCA- -(GUAA-)-- UGGAU|GA-A 4561 GUCG|A|GGA GUACUAAUA- GACCGA-GG| GCUUGA-CCU UU------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS F.succinog 4759 bp RNA RNA 01-MAY-1997 DEFINITION Fibrobacter succinogenes.; 23S ribosomal RNA. ACCESSION AB0033 0 KEYWORDS 23S ribosomal RNA. SOURCE Fibrobacter succinogenes. ORGANISM Fibrobacter succinogenes. REFERENCE 1 (bases 1 to 2573) AUTHORS Tajima,K. TITLE Direct Submission JOURNAL Submitted (25-APR-1997) to the DDBJ/EMBL/GenBank databases. Kiyoshi Tajima, STAFF Institute, Rumen Microbiology Research Team; 446-1 Ippaizuka, Kamiyokoba, Tsukuba, Ibaraki 305, Japan (E-mail: tajima@gene.staff.or.jp, Tel:+81-298-38-2196, Fax :+81-298-38-2337) STANDARD No information REFERENCE 2 (sites) AUTHORS Tajima,K., Nagamine,T., Aminov,R., Ogata,K., Sugiura,M. and Benno,Y. TITLE Phylogenetic diversity of rumen bacteria JOURNAL Unpublished (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: AB003380 BASE COUNT 652 a 652 c 828 g 441 t 2186 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~-~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~GGAACU|G A(AACA)UCU 541 AAGUA-CCCG GA-GAAAAGA AAUC(-AACC --)GAGAU|U CC-CGUAGUA GU(GGUGA)G 601 CGA-ACC-GG GA-GGA-GCC CA-------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----gacgg guugcauaca guggacggaa agcGAA--gg g-a(u-ggaa a)g-cccccc 781 |c(aca)gca gg(ugacagg )ccugu-agc gaucuuuaag cugaugu-cc g---ucgaag 841 a--------- ---------- ---------- GUAGGGCGGG A(CACGUG-A AA)UCCUGCC 901 UGAAGAC-GG G-GG(GACCA C)CC-UCC-A AGGCUAA--- -AUAcgagcg gaugACCGAU 961 AGuG-cAc-- AGUACC(AUG A)-GGGA-AA GGUGAAAA-G CACCC-(cga ga-)-ggga- 1021 -GUGAAA-UA GCGCCUGAAA CCGC-GUGCA UACAU-U-CU GUCGGAGGGA -----gga-- 1081 --------(- ---uuca--) ---------- -ucc---ucc ugacggcgug ccu(uuu-gu 1141 uu|a)auga| -gccagcgag uugcucgug- uacgGC-aaG GUUAAGGGC( -cucag)GUC 1201 C-GGAGCCGA AGC(gaaa-) GC-GGUCU(C AA-CU)GGGC GA-------- ---------- 1261 ---------- -----cc--a G-Ucguacac ggca-GACAC GAAGCCUUA- GUGA-UCUAC 1321 CCAUGGC|CA AGCUGAAGCG GAAG(UAAC) AU-UCCGUGG AGGGCUGAAc c-gauauac( 1381 -auugaaac) guguu|cgg- AUGAG-CUGU GGGUAGGGGU (-gaaag)gc caauCAAACU 1441 GGGCGAUAGC UUGUUCUCUC CGAAACAUAU (uUaAG)GUA UGGC|-GUCA UGUU----A| 1501 -gcu|ucacg G|GGGUAG|A GC-ACUGG-c aggaCUA-GG |-Gggca(ca cc-)cgcuUA 1561 CCaaacccua -ucAAACUcc gaa-ua-|cc g-u-g-a-ac cgcg---au| GCA-UGGCAG 1621 ACAGCC--UG C-GAGU(GAU AAG)AUCCGU -AGAC-GAAA GGG(-aaaca ac)CCCUGAc 1681 caccgacUAA GCGU|CCCCc AAGUA-CGUG -C-CAA-GUG ------GGAA AGGAUGUG-G 1741 AGCUGCACA- GACAGCCAGG AGGUUAGC(U UAGAAGCA)G CUAU-CCU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG GU-----CAA GC--GC-UC- -CGC|GCCAA AAAu-g-au- 1861 CGGGACU-AA GCACG-U|C| ACCGAAGUC| GUGG|gcucu g------(gc aa-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ---cagagc- GG-UAGGAGA -|-----cgu 2221 u-ccg-ca-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --ggCCUG-G 2341 GAAGGCG-G- G-UG(-GCGA -)ugc--ccg cUGG|aggca c-cggaaacg agaaugc-ug 2401 gc|AUG-AGU A-uGCGAAAA UGCGGG(UGA AAAA)CCCGC A|CACC-GUA AGUCCAAGGG 2461 UUCCCG-GGC AAGG-(AUAA U)CC|U-CCC GGGGUCAGU| CGG|G-AUCU AAGACGAGGC 2521 C(GAGA)-G- GCGU-AGCCG AUGA-CAACC AGG-(UG-AA CAUU)C-CUG G|AC|cc-u- 2581 cc-gau-aag ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ----cgucac gaccgacgcg g--cga-cgc augggaauu- cacg-g-|gg c-ggc(cg-- 2761 augg-a-ugc c-)gc-ugaa -|gga----- ---------- ---gugc-g- aguc------ 2821 ---gcug-gg gcgg(ca-aa -u-)cc|c-- cccagcacau gaccca---- -ggc-uccgg 2881 ---------- ---|accccc ---ggaa-gg c(-uucg--) gcc------- ggaa--gggg 2941 --cgccg-cg augg-acc-| gugcCagGAA A-aaccgc-u aaggg----- ------ag-c 3001 gaacgg--ag g|C|CCGUAC CGUAAACC(G ACACA)GG|U GG-ACGAGG- C-(GAAUA)G 3061 CCUAAGGUGC ||UCGAGACA ACUCGGGAG- ---------- ----AAGGAA CUCGGCAAAU 3121 UAACCCCGUA AC(-UUCG)G GAUAAGGGga |gccuccggu -cgug----- ------agua 3181 c(-ggaca)g uacg------ ----gagcgu cuggagg-U| C(GCA)GGGA AACGGCA-GA 3241 AG|CGACU-- ---GU(UUAC CAAAA)ACAC AGGGCCAUG| CUAACAC(GC AA------)G 3301 UG-ACGU-AU AUGGUCUGA- CACGUGCCCG GU|GCCG-GA A-GGUUAACA Ggagggguca 3361 gc-------- (g-caa)--- --------g- ga-agc-cug aaucgAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUCGUGUAAC GA-CUUCUGC ACUGUCUCCU CCCGGGACUC 3541 G|GCGAAAUU |GCAGUGC-C GG(UGAAGAU G)CCGGCAAC CCGCACC-UG GACGGAAAGA 3601 CCCCAUGA|A CCU-UCACUG U|AUUUUGAC AUU|gguuuu agggcuggca UGUGUAGGAU 3661 AGGUGGGAGG CUACGAGC-- CGGCGAC(GC CA)GUCGUCG GGGAGCCGUC -C-UUGAAAU 3721 ACCACC|CUu g-cccguuuU GAG-AUCUAA -CCUCGU--- -CCCG(--UC -AUC)-CGGG 3781 ACAGG-GACC GUGUCUGAUG GU-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(CAA-AAGG 3841 UAAC)GGAGG C|A|U|CCAA AGGUUCCC|U CAGCGCGG(U CGGCAA)UCG CGCGCA-GA| 3901 GC(A|CAAAG )GCAUAAGGG AGCUUGACUG CGAGAC(GGA CAC)GUCGAG CAGGUAC(GA 3961 AA)GU-AGGG |CUUAGUGAU CCCGCGGUAC AG(CGUGGA) AAG|GCCGUU GCUCAAU|GG 4021 AUAAAAGGUA CUC|UGGG|G AUAACAG|GC UGA--UCUCC CCCAAGC(G- UUC-AUA)GC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GGAG 4141 A---A)-GGU CCCAAGGGU| UUGGC(UGUU C)GC-CAAUU AAAGCGGCAC G-CGAGCUGG 4201 GUUCA-AAAC |GUC(GUGA) -GACAGUU-U GGU-CCCUAU -CC|GGUGUG G-G|CG-UUC 4261 GAGACUU|GA -|GGGAAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGACGG|ACG GACUCC-GGU GUACCGG-|U GUCGC(GC-C A-)GCGGCA- UUGCCGGGUA 4381 GCC-AUGUCC GGAUUGGAGA AACGCU(GAA AGCAUCUA)A GCGGG~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS SPIROCHETE 4759 bp RNA RNA 17-JAN-1993 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 4759 others ORIGIN 1 -x~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~-)~|- ~~~~~~~~~~ 181 ~~~~~~|-~~ ~~~(~-~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~--- ---------- ---------- 301 -----~~~~~ ~~~~~~~~~~ ~~~~~~---- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- -----~-~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~|~ ~~-~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---- 721 ---~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~-~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~-- -~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ -~~~-~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| -~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 -~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 -~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~-~ ~~~~~~~~~~ |-~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~-~~~~| ~~~~~~~~~~ 1621 ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~-~~~~~ ~-~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~-~~~ ~----~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~-~- -~~-|~~~~~ ~~~~-~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~|-----~~~ 2221 ~-~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~- ~-~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 2401 ~~|~~~~-~~ ~-~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~-~~ ~~~~~~-~~~ ~~~~|~~~~- 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~------~~~ ~~--~~-~~~ ~~~~~~~~~- ~~~~-~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ---------- --~~~~~~~~ ~~~~~~~~-- 2821 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~----~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 --~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~-~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~- ---~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~---~~~~~ 3301 ~~~~~~~~-~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~-~~ ~-~~-~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~( ~~~)~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ 3721 ~~~~~~|~~~ ~~~-~~~~~~ ~~~~~-~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~-~~-~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~|~|~|~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~---~ ~~~~~~-~~~ 3901 ~|~~(~|~~~ ~~)~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~-~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~~~|~~~~ ~~~~~~~~~| 4021 ~~~~~~~~~~ ~~~~~|~~~~ |~~~~~~-~| ~~~~~--~~~ ~~~~~~~~~( ~~~~~~~~~) 4081 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~|~~~~|~~~ ~~~~~~~~~| ~~~~~(~~~~ 4141 ~~~~~--)-~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ -~~~~~~|~~ ~~~~~~~|~~ 4261 ~~~~~~~~~~ -|~-|~~~~~ -~~~~~~--- ---------- -~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4381 ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 |~~~~~~~~~ ~~~~~|~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~|~~~~~-~ 4501 ~~~~~~-~~~ ~~~~~~~~~~ ~~|~~~~~|~ ~~~~~-~~~~ ~~~~~~~~~~ ~--~~~~~~| 4561 ~~~~|~~~-~ |~~~~~~~~~ ~~~~~~~~-- ~~~|~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~||||| // LOCUS Bra.hyodys 4759 bp RNA RNA 02-APR-1997 DEFINITION Brachyspira hyodysenteriae.; . ACCESSION U72699 KEYWORDS . SOURCE Brachyspira hyodysenteriae. ORGANISM Brachyspira hyodysenteriae. REFERENCE 1 (bases 1 to 2465) AUTHORS Leser,T.D., Miller,K., Jensen,T.K., Jorsal,S.E. and Meyling,A . TITLE Specific detection of Serpulina hyodysenteriae and pathogenic weakly beta-haemolytic intestinal spirochetes by polymerase chain reaction targeting 23S rDNA JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2465) AUTHORS Leser,T.D., Miller,K., Jensen,T.K., Jorsal,S.E. and Meyling,A. TITLE Direct Submission JOURNAL Submitted (27-SEP-1996) Dept. Microbiology, Danish Veterinary Laboratory, Bulowsvej 27, Copenhagen V DK-1790, Denmark STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U72699 BASE COUNT 713 a 448 c 696 g 608 t 2294 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~U AAUC(-AAAA UU)GAGAU|U CC-CUAAGUA GU(GGCGA)G 601 CGA-AAG-GG GA-AGA-GCC UAAAccuuaa -uaaugucaa --gcu(gcaa -)---ggc-g 661 uuguuauuau gguguuguag ggcgguaa-- ------guga ugu(-acuu- --)gcau-gc 721 -------auc gacuuugcuu uauaugau-a gugGAAc-ug uuu(u-ggaa a)a-gcagac 781 |c(aua)guG GG(UGAUAGU )CCUGU-Aca c-gaaaucau auaga-caag guu------- 841 ---------- ---uuaucgu -uccu---GA GUAGGGCGGG G(CACGUG-A AA)CCCUGUU 901 UGAAUCU-GG G-UA(GACCA C)UA-UCC-A AGGCAAA--- -AUACUAACC AGUGACCAAU 961 AGUG-UA--G AGUACC(GUG A)-GGGA-AA GGUGAAAA-G UCUCCC(GUU GA-)GGGUU- 1021 -AUUAAA-UA GAACCUGAAA CCUU-AAGCU UACAAGU-UA GUCAGAGGGU -ACC-cug-- 1081 cua-----(- -gcaauag-) --------ua g--aug-gcc UGAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -GCCUGCGAC UUAU-AGUA- UGUAGC-AAG AUUAAGAGG( UAAUAG)CCU 1201 U-GUAGUCGU AGU(GAAA-) GCGA-CCU(U AA-UA)GGGC GA-------- ---------- 1261 ---------- ----aau-ua g-uUGCAUGC UAUACGACCC GAAGC-CAA- GUGA-UCUAC 1321 CUAUGAG|CA GCGCGAAACU CGAG(UAAC) AU-CGAAUGG aGGUGCGAAC C--AGUGGC( 1381 -CGUGAAAA) GGCUU|UGG- AUGAC-UUGU GGGUAGGAGU (-GAAAG)GC UAAUCAAACU 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUGUCU (-UUAG)GGG CAGC|-GUUA UGUGU---U| 1501 -UAC|UUGCG G|GGGUAG|A GC-ACUAA-A UGGACUA-GG |-GCUCC(ua acc)-GAGUA 1561 CCAAACCCAA -CUAAACUCC GAA-UA-|CC G-U-A-A--- GUUA---AG| AACAUGGCAG 1621 UUAGAC--AG C-GGCG(GAU AAG)CGUCAU -UGUC-AAAA GGG(-AAACA G-)CCCAGAU 1681 CCUCAGCUAA G-GU|CCCA- AAA-UCUAUG -U-UAA-GUG ------GGAA AGGAUGUG-A 1741 GAAUACUUA- AACAGCCAGG AGGUUGGC(U UAGAAGCA)G CCAUUCCU|U (UAA)A|GAG 1801 UGC(GUAACA )GC|UCACUG GU-----CGA GU-GUUCCU- -UGc|GCCGA AAAU-GUAA- 1861 CGGGGCUCAA ACAUA-G|U| ACCGAAGCU| AGGG|aauua uaga---(gu uaa------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ucuauaauu- GG-UAGGAGA G|-----CGU 2221 U-CUU-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCGU-C 2341 GAAGGUU-C- A-UC(-GUGA -)GGU--GGG CUGG|AGGUA U-AAGAAGUG AGGAUGC-AG 2401 GC|AUG-AGU A--ACGAGAA AACGGG(UGA GAAA)CCCGU U|CGCC-GCA AACCCAAGGU 2461 UUCCUA-GGU AAAG-(CUAA U)CU|G-CCU AGGGUUAGU| CGA|C-CCCU AAGAUGAGGC 2521 U(GAAA)-A- GCGU-AGUCG AUGG-GAAAC AGG-(UA-AA UAUU)C-CUG U|AC|ua-u- 2581 ga-uau-guu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------ucga u------gga a--uga-cac agauuguuu- augu-a-|cg c-guu(ag-- 2761 auuggu-aga u-)aa-cguc -|aaac---- ---------- ---aguu--u agac------ 2821 -uugagg-ug a-gu(aa-aa -u-)gc|u-- ugcuucuuua a--------- gguu-ga-gg 2881 cuggauag|u ga-|------ ----cugggc u(-uucg--) gguucag--- ------gaag 2941 -uugcau--g agcu-agg-| cugucgagaa auaauuuu-u aagguu---- ------aggc 3001 -auguc--au a|A|UUGUAC CGCAAACC(G ACACA)GG|U GG-GUGAGA- U-(GAGUA)U 3061 UUUAAGGCGC ||UCGAGAUA AUUUUCCCU- ---------- ----AAGGAA CUUUGCAAAU 3121 UAGUUUUGUA AA(-UUCG)G AAAAAGAGAC |GCUUGAau- -uuuggu--- -------agc 3181 a(-auau-)u gagag----- ---------- --GAGAG-U| U(GCA)GUGA AAAGGCC-UG 3241 GC|CGACU-- ---GU(UUAA CAAAA)ACAC AGAUUUUUG| CAAACAU(GU AA------)A 3301 UGGAUGU-AU AGGGAUUGA- CACCUGCCCA GU|GCUG-GA A-GGUUAAAA GGAGAGGUUA 3361 GC-------- (G-UAA)--- --------GC GA-AGCUUCG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUG )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGUGUAAC GA-UCCGGGC ACUGUCUCGG GGAAGAACUC 3541 G|GUGAAAUU |GAAUUAU-C AG(UGAAGAU G)CUGAUUAC CCGCAAC-AG GACGGUAAGA 3601 CCCCGUGA|A CCU-UUACUA U|AACUUGAC AUU|GAGUUU UGUUUUGUGA UGUGUAGGAU 3661 AGAUGGGAGG CUUUGAAG-- UGGGAGC(GC CA)GCUUUCA UGGAGCCAUC -G-UUGAAAU 3721 ACCAUC|CUU C-GCAAAAUG GGA-UUCUAA -CGA-UUA-- -GCCG(--UU -AUC)-CGGC 3781 AGUCG-GACA UUGUCAGGCG GG-UAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AGAG 3841 UAAC)GGAGG C|G|U|GCAA AGGUCACC|U CAAACCGA(A UAGAAA)UCG GUAGUA-GA| 3901 GU(A|UAAAG )GCAUAAGGU GGCUUGACUG CGAGAG(AGA CAU)CUCGAG CAGGUAC(GA 3961 AA)GU-AGGU |CUUAGUGAU CCGGUGGUCC CG(AGUGGA) AGG|GCCAUC GCUAAAC|GG 4021 ACAAAAGGUA CUC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UUC-AUA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GGAG 4141 C---A)-GGU CCCAAGGGU| UUGGC(UGUU C)GC-CAAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-A~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS Bra.inno.1 4759 bp RNA RNA 02-APR-1997 DEFINITION Brachyspira innocens; . ACCESSION U72700 KEYWORDS . SOURCE Brachyspira innocens. ORGANISM Brachyspira innocens. REFERENCE 1 (bases 1 to 2465) AUTHORS . Leser,T.D., Moller,K., Jensen,T.K., Jorsal,S.E. and Meyling,A TITLE weakly beta-haemolytic intestinal spirochetes by polymerase chain reaction targeting 23S rDNA Specific detection of Serpulina hyodysenteriae and pathogenic JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2465) AUTHORS Leser,T.D., Miller,K., Jensen,T.K., Jorsal,S.E. and Meyling,A. TITLE Direct Submission JOURNAL Submitted (27-SEP-1996) Dept. Microbiology, Danish Veterinary Laboratory, Bulowsvej 27, Copenhagen V DK-1790, Denmark STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U72700 BASE COUNT 710 a 450 c 700 g 605 t 2294 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~U AAUC(-AAAA UU)GAGAU|U CC-CUAAGUA GU(GGCGA)G 601 CGA-AAG-GG GA-AGA-GCC UAAAccuuaa -uaaugucaa --guu(guaa -)---ggc-g 661 uuguuauuau gguguuguag ggcgguaa-- ------guga ugu(-acuu- --)acau-gc 721 auc------- gacuuugcuu uauaugau-a gugGAAc-ug uuu(u-ggaa a)a-gcagac 781 |c(aua)guG GG(UGAUAGU )CCCGU-Aca c-gaaaucau auaga-caag guu------- 841 ---------- ---uuaucgu -uccu---GA GUAGGGCGGG G(CACGUG-A AA)CCCUGUU 901 UGAAUCU-GG G-UA(GACCA C)UA-UCC-A AGGCAAA--- -AUACUAACC AGUGACCAAU 961 AGUG-UA--G AGUACC(GUG A)-GGGA-AA GGUGAAAA-G UCUCCC(GUU GA-)GGGUU- 1021 -AUUAAA-UA GAACCUGAAA CCUU-AAGCU UACAA-G-UA GUCAGAGGGU -ACc-cug-- 1081 cua-----(- -gcaauag-) --------ua g--aug-gcc UGAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -GCCUGCGAC UUAU-AGUA- CGUAGC-AAG AUUAAGAGG( UAAUAG)CCU 1201 U-GUAGUCGU AGU(GAAA-) GCGAGCCU(U AA-UA)GGGC GA-------- ---------- 1261 ---------- ----aau-ua g-uUGCGUGC UAUACGACCC GAAGC-CAA- GUGA-UCUAC 1321 CUAUGAG|CA GCGCGAAACU CGAG(UAAC) AU-CGAAUGG aGGUGCGAAC C--AGUGGC( 1381 -CGUGAAAA) GGCUU|UGG- AUGAC-UUGU GGGUAGGAGU (-GAAAG)GC UAAUCAAACU 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUGUCU (-UUAG)GGG CAGC|-GUUA UGUGU---U| 1501 -UAC|UUGCG G|GGGUAG|A GC-ACUAA-A UGGACUA-GG |-GCUCC(ua acc)-GAGUA 1561 CCAAACCCAA -CUAAACUCC GAA-UA-|CC G-U-A-A--- GUUA---AG| AACAUGGCAG 1621 UUAGAC--AG C-GGCG(GAU AAG)CGUCAU -UGUC-AAAA GGG(-AAACA G-)CCCAGAU 1681 CCUCAGCUAA G-GU|CCCA- AAA-UCUAUG -U-UAA-GUG ------GGAA AGGAUGUG-A 1741 GAAUACUUA- AACAGCCAGG AGGUUGGC(U UAGAAGCA)G CCAUUCCU|U (UAA)A|GAG 1801 UGC(GUAACA )GC|UCACUG GU-----CGA GU-GUC-CU- -UGC|GCCGA AAAU-GUAA- 1861 CGGGGCUCAA ACAUA-G|U| ACCGAAGCU| AGGG|aauua uaga---(gu uaa------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ucuauaauu- GG-UAGGAGA G|-----CGU 2221 U-CUU-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCGU-U 2341 GAAGGUU-U- A-CC(-GUGA -)GGU--GGG CUGG|AGGUA U-AAGAAGUG AGGAUGC-AG 2401 GC|AUG-AGU A--ACGAGAA AACGGG(UGA GAAA)CCCGU U|CGCC-GCA AACCCAAGGU 2461 UUCCUA-GGU AAAG-(CUAA U)CU|G-CCU AGGGUUAGU| CGA|C-CCCU AAGAUGAGGC 2521 U(GAAA)-A- GCGU-AGUCG AUGG-GAAAC AGG-(UA-AA UAUU)C-CUG U|AC|ua-u- 2581 ga-uau-guu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------ucga u------gga a--uga-cac agauuguuu- gcgu-a-|cg c-guu(ag-- 2761 auuggu-aga u-)aa-cguc -|aaac---- ---------- ---aguu--u agac------ 2821 -uuguga-ug a-gu(aa-aa -u-)gc|u-- uguugcuuua a--------- gguu-ga-gg 2881 cuggauag|u ga-|------ ----cugggc u(-uucg--) gguucag--- ------gaag 2941 -uugcgu--g agcu-agg-| cugucgagaa auaauuuu-u aagguu---- ------aggc 3001 -auguc--au a|A|UUGUAC CGCAAACC(G ACACA)GG|U GG-GUGAGA- U-(GAGUA)U 3061 UUUAAGGCGC ||UCGAGAUA AUUUUCCCU- ---------- ----AAGGAA CUUUGCAAAU 3121 UAGUUUUGUA AA(-UUCG)G AAAAAGAGAC |GCUUGAau- -uuuggu--- -------agc 3181 a(-auau-)u gagag----- ---------- --GAGAG-U| U(GCA)GUGA AAAGGCC-UG 3241 GC|CGACU-- ---GU(UUAA CAAAA)ACAC AGAUUUUUG| CAAACAU(GU AA------)A 3301 UGGAUGU-AU AGGGAUUGA- CACCUGCCCA GU|GCUG-GA A-GGUUAAAA GGAGAGGUUA 3361 GC-------- (G-UAA)--- --------GC GA-AGCUUCG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUG )ACGGUC|C( UAA)GGUAGC GcAAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGUGUAAC GA-UCCGGGC ACUGUCUCGG GGAAGAACUC 3541 G|GUGAAAUU |GAAUUAU-C AG(UGAAGAU G)CUGAUUAC CCGCAAC-AG GACGGUAAGA 3601 CCCCGUGA|A CCU-UUACUA U|AACUUGAC AUU|GAGUUU UGUUUUGUGA UGUGUAGGAU 3661 AGAUGGGAGG CUUUGAAG-- UGGGAGC(GC CA)GCUUUCA UGGAGCCAUC -G-UUGAAAU 3721 ACCAUC|CUU C-GCAAAAUG GGA-UUCUAA -CGG-UUA-- -GCCG(--UU -AUC)-CGGC 3781 AGCCG-GACA UUGUCAGGCG GG-UAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AGAG 3841 UAAC)GGAGG C|G|U|GCAA AGGUCACC|U CAAACCGA(A UAGAAA)UCG GUAGUA-GA| 3901 GU(A|UAAAG )GCAUAAGGU GGCUUGACUG CGAGAG(AGA CAU)CUCGAG CAGGUAC(GA 3961 AA)GU-AGGU |CUUAGUGAU CCGGUGGUCC CG(AGUGGA) AGG|GCCAUC GCUAAAC|GG 4021 ACAAAAGGUA CUC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UUC-AUA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GGAG 4141 C---A)-GGU CCCAAGGGU| UUGGC(UGUU C)GC-CAAUC AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-A~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS Bra.inno.2 4759 bp RNA RNA 02-APR-1997 DEFINITION Brachyspira innocens; . ACCESSION U72701 KEYWORDS . SOURCE Brachyspira innocens. ORGANISM Brachyspira innocens. REFERENCE 1 (bases 1 to 2464) AUTHORS Leser,T.D., Moller,K., Jensen,T.K., Jorsal,S.E. and Meyling,A . TITLE weakly beta-haemolytic intestinal spirochetes by polymerase chain reaction targeting 23S rDNA Specific detection of Serpulina hyodysenteriae and pathogenic JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2464) AUTHORS Leser,T.D., Miller,K., Jensen,T.K., Jorsal,S.E. and Meyling,A. TITLE Direct Submission JOURNAL Submitted (27-SEP-1996) Dept. Microbiology, Danish Veterinary Laboratory, Bulowsvej 27, Copenhagen V DK-1790, Denmark STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U72701 BASE COUNT 714 a 445 c 698 g 607 t 2295 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~U AAUC(-AAAA UU)GAGAU|U CC-CUAAGUA GU(GGCGA)G 601 CGA-AAG-GG GA-AGA-GCC UAAAccauaa -uaaugucaa --guu(guaa -)---ggc-g 661 uuguuauuau gguguuguag ggcgguga-- ------guga ugu--acuu- ---acau-gc 721 -------auc gacuuugcuu uauaugau-a gugGAAc-ug uuu(u-ggaa a)a-gcagac 781 |c(aua)guG AG(UGAUAGU )CUCGU-Aca c-gaaaucau auaga-caag guu------- 841 ---------- ---uuaccgu -uccu---GA GUAGGGCGGG G(CACGUG-A AA)CCCUGUU 901 UGAAUCU-GG G-UA(GACCA C)UA-UCC-A AGGCAAA--- -AUACUAACC AGUGACCAAU 961 AGUG-UA--G AGUACC(GUG A)-GGGA-AA GGUGAAAA-G UCUCCC(GUU GA-)GGGUU- 1021 -AUUAAA-UA GAACCUGAAA CCUU-AAGCU UACAA-G-UA GUCAGAGGGG -ACc-cug-- 1081 cua-----(- -gcaauag-) --------ua g--aag-gcc UGAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -GCCUGCGAC UUAU-AGUA- CGUAGC-AAG AUUAAGAGG( UAAUAG)CCU 1201 U-GUAGUCGU AGU(GAAA-) GCGAG-CU(U AA-UA)GGGC GA-------- ---------- 1261 ---------- ----cau-ua g-uUGCGUGC UAUACGACCC GAAGC-CAA- GUGA-UCUAC 1321 CUAUGAG|CA GUGCGAAACU CGAG(UAAC) AU-CGAAUGG aGGUGCGAAC C--AGUGGC( 1381 -CGUGAAAA) GGCUU|UGG- AUGAC-UUGU GGGUAGGAGU (-GAAAG)GC UAAUCAAACU 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUGUCU (-UUAG)GGG CAGC|-GUUA UGUGU---U| 1501 -UAC|UUACG G|GGGUAG|A GC-ACUAA-A UGGACUA-GG |-GCUCC(ua acc)-GAGUA 1561 CCAAACCCAA -CUAAACUCC GAA-UA-|CC G-U-A-A--- GUUA---AG| AGCAUGGCAG 1621 UUAGAC--AG C-GGCG(GAU AAG)CGUCAU -UGUC-AAAA GGG(-AAACA G-)CCCAGAU 1681 CCUCAGCUAA G-GU|CCCA- AAA-UCUAUG -U-UAA-GUG ------GGAA AGGAUGUG-A 1741 GAAUACUUA- AACAGCCAGG AGGUUGGC(U UAGAAGCA)G CCAUUCCU|U (UAA)A|GAG 1801 UGC(GUAACA )GC|UCACUG GU-----CGA GU-GUU-CU- -UGC|GCCGA AAAU-GUAA- 1861 CGGGGCUCAA ACAUA-G|U| ACCGAAGCU| AGGG|aauua uaga---(gu uaa------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ucuauaauu- GG-UAGGAGA G|-----CGU 2221 U-CUU-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCGU-U 2341 GAAGGUU-U- G-CC(-GUAA -)GGC--GGG CUGG|AGGUA U-AAGAAGUG AGGAUGC-AG 2401 GC|AUG-AGU A--ACGAGAA AACGGG(UGA GAAA)CCCGU U|CGCC-GCA AACCCAAGGU 2461 UUCCUA-GGU AAAG-(CUAA U)CU|G-CCU AGGGUUAGU| CGA|C-CCCU AAGAUGAGGC 2521 U(GAAA)-A- GCGU-AGUCG AUGG-GAAAC AGG-(UA-AA UAUU)C-CUG U|AC|ua-u- 2581 ga-uau-guu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------ucga u------gga a--uga-cac agauuguuu- acgu-a-|cg c-guu(ag-- 2761 auuggu-aga u-)aa-cguc -|aaac---- ---------- ---aguu--u agac------ 2821 -uuguga-ug a-gu(aa-aa -u-)gc|u-- uguugcuuua a--------- gguu-ga-gg 2881 cuggauag|u ga-|------ ----cugggc u(-uucg--) gguucag--- ------gaag 2941 -uugcgu--g agcu-agg-| cugucgagaa auaauuuu-u aagguu---- ------aggc 3001 -auguc--au a|A|UUGUAC CGCAAACC(G ACACA)GG|U GG-GUGAGA- U-(GAGUA)U 3061 UUUAAGGCGC ||UCGAGAUA AUUUUCCCU- ---------- ----AAGGAA CUUUGCAAAU 3121 UAGUUUUGUA AA(-UUCG)G AAAAAGAGAC |GCUUGAau- -uuuggu--- -------agc 3181 a(-auau-)u gagag----- ---------- --GAGAG-U| U(GCA)GUGA AAAGGCC-UG 3241 GC|CGACU-- ---GU(UUAA CAAAA)ACAC AGAUUUUUG| CAAACAU(GU AA------)A 3301 UGGAUGU-AU AGGGAUUGA- CACCUGCCCA GU|GCUG-GA A-GGUUAAAA GGAGAGGUUA 3361 GC-------- (G-UAA)--- --------GC GA-AGCUUUG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUG )ACGGUC|C( UAA)GGUAGC GaGAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGUGUAAC GA-UCCGGGC ACUGUCUCGG GGAAGAACUC 3541 G|GUGAAAUU |GAAUUAU-C AG(UGAAGAU G)CUGAUUAC CCGCAAC-AG GACGGUAAGA 3601 CCCCGUGA|A CCU-UUACUA U|AACUUGAC AUU|GAGUUU UGUUUUGUGA UGUGUAGAAU 3661 AGAUGGGAGG CUUUGAAG-- UGGGAGC(GC CA)GCUUUCA UGGAGCCAUC -U-UUGAAAU 3721 ACCAUC|CUU C-GCAAAAUG GGA-UUCUAA -CGA-UUA-- -GCCG(--UU -AUC)-CGGC 3781 AGUCG-GACA UUGUCAGGCG GG-UAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AGAG 3841 UAAC)GGAGG C|G|U|GCAA AGGUCACC|U CAAACCGA(A UAGAAA)UCG GUAGUA-GA| 3901 GU(A|UAAAG )GCAUAAGGU GGCUUGACUG CGAGAG(AGA CAU)CUCGAG CAGGUAC(GA 3961 AA)GU-AGGU |CUUAGUGAU CCGGUGGUCC CG(AGUGGA) AGG|GCCAUC GCUAAAC|GG 4021 ACAAAAGGUA CUC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UUC-AUA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GGAG 4141 C---A)-GGU CCCAAGGGU| UUGGC(UGUU C)GC-CAAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-A~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS Bra.inno.3 4759 bp RNA RNA 02-APR-1997 DEFINITION Brachyspira innocens; . ACCESSION U72702 KEYWORDS . SOURCE Brachyspira innocens. ORGANISM Brachyspira innocens. REFERENCE 1 (bases 1 to 2465) AUTHORS . Leser,T.D., Moller,K., Jensen,T.K., Jorsal,S.E. and Meyling,A TITLE chain reaction targeting 23S rDNA Specific detection of Serpulina hyodysenteriae and pathogenic weakly beta-haemolytic intestinal spirochetes by polymerase JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2465) AUTHORS Leser,T.D., Miller,K., Jensen,T.K., Jorsal,S.E. and Meyling,A. TITLE Direct Submission JOURNAL Submitted (27-SEP-1996) Dept. Microbiology, Danish Veterinary Laboratory, Bulowsvej 27, Copenhagen V DK-1790, Denmark STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U72702 BASE COUNT 714 a 446 c 698 g 607 t 2294 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~U AAUC(-AAAA UU)GAGAU|U CC-CUAAGUA GU(GGCGA)G 601 CGA-AAG-GG GA-AGA-GCC UAAAccauaa -uaaugucaa --guu(guaa -)---ggc-g 661 uuguuauuau gguguuguag ggcgguga-- ------guga ugua-cuuac augc------ 721 -------auc gacuuugcuu uauaugau-a gugGAAc-ug uuu(u-ggaa a)a-gcagac 781 |c(aua)guG AG(UGAUAGU )CUCGU-Aca c-gaaaucau auaga-caag guu------- 841 ---------- ---uuaccgu -uccu---GA GUAGGGCGGG G(CACGUG-A AA)CCCUGUU 901 UGAAUCU-GG G-UA(GACCA C)UA-UCC-A AGGCAAA--- -AUACUAACC AGUGACCAAU 961 AGUG-UA--G AGUACC(GUG A)-GGGA-AA GGUGAAAA-G UCUCCC(GUU GA-)GGGUU- 1021 -AUUAAA-UA GAACCUGAAA CCUU-AAGCU UACAA-G-UA GUCAGAGGGG -ACc-cug-- 1081 cua-----(- -gcaauag-) --------ua g--aag-gcc UGAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -GCCUGCGAC UUAU-AGUA- CGUAGC-AAG AUUAAGAGG( UAAUAG)CCU 1201 U-GUAGUCGU AGU(GAAA-) GCGAG-CU(U AA-UA)GGGC GA-------- ---------- 1261 ---------- ----cau-ua g-uUGCGUGC UAUACGACCC GAAGC-CAA- GUGA-UCUAC 1321 CUAUGAG|CA GUGCGAAACU CGAG(UAAC) AU-CGAAUGG aGGUGCGAAC C--AGUGGC( 1381 -CGUGAAAA) GGCUU|UGG- AUGAC-UUGU GGGUAGGAGU (-GAAAG)GC UAAUCAAACU 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUGUCU (-UUAG)GGG CAGC|-GUUA UGUGU---U| 1501 -UAC|UUACG G|GGGUAG|A GC-ACUAA-A UGGACUA-GG |-GCUCC(ua acc)-GAGUA 1561 CCAAACCCAA -CUAAACUCC GAA-UA-|CC G-U-A-A--- GUUA---AG| AGCAUGGCAG 1621 UUAGAC--AG C-GGCG(GAU AAG)CGUCAU -UGUC-AAAA GGG(-AAACA G-)CCCAGAU 1681 CCUCAGCUAA G-GU|CCCA- AAA-UCUAUG -U-UAA-GUG ------GGAA AGGAUGUG-A 1741 GAAUACUUA- AACAGCCAGG AGGUUGGC(U UAGAAGCA)G CCAUUCCU|U (UAA)A|GAG 1801 UGC(GUAACA )GC|UCACUG GU-----CGA GU-GUUCCU- -UGC|GCCGA AAAU-GUAA- 1861 CGGGGCUCAA ACAUA-G|U| ACCGAAGCU| AGGG|aauua uaga---(gu uaa------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ucuauaauu- GG-UAGGAGA G|-----CGU 2221 U-CUU-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCGU-U 2341 GAAGGUU-U- A-CC(-GUAA -)GGU--GGG CUGG|AGGUA U-AAGAAGUG AGGAUGC-AG 2401 GC|AUG-AGU A--ACGAGAA AACGGG(UGA GAAA)CCCGU U|CGCC-GCA AACCCAAGGU 2461 UUCCUA-GGU AAAG-(CUAA U)CU|G-CCU AGGGUUAGU| CGA|C-CCCU AAGAUGAGGC 2521 U(GAAA)-A- GCGU-AGUCG AUGG-GAAAC AGG-(UA-AA UAUU)C-CUG U|AC|ua-u- 2581 ga-uau-guu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------ucga u------gga a--uga-cac agauuguuu- gcgu-a-|cg c-guu(ag-- 2761 auuggu-aga u-)aa-cguc -|aaac---- ---------- ---aguu--u agac------ 2821 -uuguga-ug a-gu(aa-aa -u-)gc|u-- uguugcuuua a--------- gguu-ga-gg 2881 cuggauag|u ga-|------ ----cugggc u(-uucg--) gguucag--- ------gaag 2941 -uugcgu--g agcu-agg-| cugucgagaa auaauuuu-u aagguu---- ------aggc 3001 -auguc--au a|A|UUGUAC CGCAAACC(G ACACA)GG|U GG-GUGAGA- U-(GAGUA)U 3061 UUUAAGGCGC ||UCGAGAUA AUUUUCCCU- ---------- ----AAGGAA CUUUGCAAAU 3121 UAGUUUUGUA AA(-UUCG)G AAAAAGAGAC |GCUUGAau- -uuuggu--- -------agc 3181 a(-auau-)u gagag----- ---------- --GAGAG-U| U(GCA)GUGA AAAGGCC-UG 3241 GC|CGACU-- ---GU(UUAA CAAAA)ACAC AGAUUUUUG| CAAACAU(GU AA------)A 3301 UGGAUGU-AU AGGGAUUGA- CACCUGCCCA GU|GCUG-GA A-GGUUAAAA GGAGAGGUUA 3361 GC-------- (G-UAA)--- --------GC GA-AGCUUCG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUG )ACGGUC|C( UAA)GGUAGC GaGAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGUGUAAC GA-UCCGGGC ACUGUCUCGG GGAAGAACUC 3541 G|GUGAAAUU |GAAUUAU-C AG(UGAAGAU G)CUGAUUAC CCGCAAC-AG GACGGUAAGA 3601 CCCCGUGA|A CCU-UUACUA U|AACUUGAC AUU|GAGUUU UGUUUUGUGA UGUGUAGAAU 3661 AGAUGGGAGG CUUUGAAG-- UGGGAGC(GC CA)GCuUUCA UGGAGCCAUC -U-UUGAAAU 3721 ACCAUC|CUU C-GCAAAAUG GGA-UUCUAA -CGA-UUA-- -GCCG(--UU -AUC)-CGGC 3781 AGUCG-GACA UUGUCAGGCG GG-UAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AGAG 3841 UAAC)GGAGG C|G|U|GCAA AGGUCACC|U CAAACCGA(A UAGAAA)UCG GUAGUA-GA| 3901 GU(A|UAAAG )GCAUAAGGU GGCUUGACUG CGAGAG(AGA CAU)CUCGAG CAGGUAC(GA 3961 AA)GU-AGGU |CUUAGUGAU CCGGUGGUCC CG(AGUGGA) AGG|GCCAUC GCUAAAC|GG 4021 ACAAAAGGUA CUC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UUC-AUA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GGAG 4141 C---A)-GGU CCCAAGGGU| UUGGC(UGUU C)GC-CAAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-A~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS Bra.pilosi 4759 bp RNA RNA 02-APR-1997 DEFINITION Brachyspira pilosicoli; . ACCESSION U72703 KEYWORDS . SOURCE Brachyspira pilosicoli. ORGANISM Brachyspira pilosicoli. REFERENCE 1 (bases 1 to 2464) AUTHORS Leser,T.D., Moller,K., Jensen,T.K., Jorsal,S.E. and Meyling,A . TITLE chain reaction Specific detection of Serpulina hyodysenteriae and pathogenic weakly beta-haemolytic intestinal spirochetes by polymerase JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2464) AUTHORS Leser,T.D., Miller,K., Jensen,T.K., Jorsal,S.E. and Meyling,A. TITLE Direct Submission JOURNAL Submitted (27-SEP-1996) Dept. Microbiology, Danish Veterinary Laboratory, Bulowsvej 27, Copenhagen V DK-1790, Denmark STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U72703 BASE COUNT 707 a 450 c 704 g 603 t 2295 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~U AAUC(-AAAA UU)GAGAU|U CC-CUCAGUA GU(GGCGA)G 601 CGA-AAG-GG GA-AGA-GCC UAAAccguaa -uaaugucaa --guu(guaa -)---ggc-g 661 uuguuauugc gguguuguag ggcggcga-- ---------g ugg(--uaua -c)uuacaua 721 u------auc gacuuugcua uauaugau-a gugGAAc-ug uuu(u-ggaa a)a-gcaggc 781 |c(aua)guG GG(UGAUAGC )CCUGU-Aca c-gaaaucau auaua-caag guu------- 841 ---------- ---uugucgu -uccu---GA GUAGGGCGGG G(CACGUG-A AA)CCCUGUU 901 UGAAUCU-GG G-UA(GACCA C)UA-UCC-A AGGCAAA--- -AUACUAACC AGUGACCAAU 961 AGUG-UA--G AGUACC(GUG A)-GGGA-AA GGUGAAAA-G UCUCCC(GUU GA-)GGGUU- 1021 -AUUAAA-UA GAACCUGAAA CCUU-AAGCU UACAA-G-UA GUCAGAGGGA -ACc-cug-- 1081 cua-----(- -gcaauag-) --------ua g--aag-gcc UGAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -GCCUGCGAC UUAU-AGUA- UGUAGC-AAG AUUAAGAGG( UAAUAG)CCU 1201 U-GUAGUCGU AGU(GAAA-) GCGAGCCU(U AA-UA)GGGC GA-------- ---------- 1261 ---------- ----aau-ua g-uUGCAUGC UAUACGACCC GAAGC-CAA- GUGA-UCUAC 1321 CUAUGAG|CA GCGCGAAACU CGAG(UAAC) AU-UGAGUGG aGGUGCGAAC C--AGUGGC( 1381 -CGUGAAAA) GGCUU|UGG- AUGAC-UUGU GGGUAGGAGU (-GAAAG)GC UAAUCAAACU 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUGUCU (-UUAG)GGG CAGC|-GUUA UGUGU---U| 1501 -UAC|UUGCG G|GGGUAG|A GC-ACUAA-A UGGACUA-GG |-GCUCC(ua acC)-GAGUA 1561 CCAAACCCAA -CUAAACUCC GAA-UA-|CC G-U-A-A--- GUUA---AG| AGCAUGGCAG 1621 UUAGAC--AG C-GGCG(GAU AAG)CGUCAU -UGUC-AAAA GGG(-AAACA G-)CCCAGAU 1681 CCUCAGCUAA G-GU|CCCA- AAA-UCUAUG -U-UAA-GUG ------GGAA AGGAUGUG-A 1741 GAAUACUUA- AACAGCCAGG AGGUUGGC(U UAGAAGCA)G CCAUUCCU|U (UAA)A|GAG 1801 UGC(GUAACA )GC|UCACUG GU-----CGA GU-GUU-UU- -UGC|GCCGA AAAU-GUAA- 1861 CGGGGCUCAA ACAUA-G|U| ACCGAAGCU| AGGG|aauua uaga---(gu uaa------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ucuaugauu- GG-UAGGAGA G|-----CGU 2221 U-CUU-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCGU-U 2341 GAAGGUG-U- A-UC(-GUAA -)GGU--AUG CUGG|AGGUA U-AAGAAGUG AGGAUGC-AG 2401 GC|AUG-AGU A--ACGAGAA AACGGG(UGC GAAA)CCCGU U|CGCC-GCA AACCCAAGGU 2461 UUCCUA-GGU AAAG-(CUAA U)CU|G-CCU AGGGUUAGU| CGA|C-CCCU AAGAUGAGGC 2521 U(GAAA)-A- GCGU-AGUCG AUGG-GAAAC AGG-(UA-AA UAUU)C-CUG U|AC|ua-u- 2581 ag-uau-guu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------ucga u------gga a--uga-cac agauuguuu- gcgu-a-|cg c-gag(gu-- 2761 gauggu-uau c-)cu-cguc -|gaau---- ---------- ---agcc--g agac------ 2821 -uugugg-ug a-gu(aa-aa -u-)gc|u-- ugcugcuuua a--------- gguu-ga-gg 2881 ugg-auag|u ga-|------ ----cugggc u(-uucg--) gguucag--- ------gaag 2941 -uugcgu--g aauu-agg-| cuguuuagaa auaauucc-u aagguu---- ------aggc 3001 -auauu--au a|A|UUGUAC CGCAAACC(G ACACA)GG|U GG-GUGAGA- U-(GAGUA)U 3061 UUUAAGGCGC ||UCGAGAUA AUUUUCCCU- ---------- ----AAGGAA CUUUGCAAAU 3121 UAGUUUUGUA AA(-UUCG)G AAAAAGAGAC |GCUUGAau- -uucggu--- -------agc 3181 a(-auau-)c gggag----- ---------- --GAGAG-U| U(GCA)GUGA AAAGGCC-UG 3241 GC|CGACU-- ---GU(UUAA CAAAA)ACAC AGAUUUUUG| CAAACAU(GU AA------)A 3301 UGGAUGU-AU AGGGAUUGA- CACCUGCCCA GU|GCUG-GA A-GGUUAAAA GGAGAGGUUA 3361 GC-------- (G-UAA)--- --------GC GA-AGCUUCG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUG )ACGGUC|C( UAA)GGUAGC GaAAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGUGUAAC GA-UCCGGGC ACUGUCUCGG GGAAGAACUC 3541 G|GUGAAAUU |GAAUUAU-C AG(UGAAGAU G)CUGAUUAC CCGCAAC-AG GACGGAGAGA 3601 CCCCGUGA|A CCU-UUACUA U|AACUUGAC AUU|GAGUUU UGUUUUGUGA UGUGUAGAAU 3661 AGAUGGGAGG CUUUGAAG-- UGGGAGC(GC CA)GCUUUCA UGGAGCCAUC -G-UUGAAAU 3721 ACCAUC|CUU C-GCAAAAUG GGA-UUCUAA -CGA-UUA-- -GCCG(--UU -AUC)-CGGC 3781 AGUCG-GACA UUGUCAGGCG GG-UAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AGAG 3841 UAAC)GGAGG C|G|U|GCAA AGGUCACC|U CAAACCGA(A UAGAAA)UCG GUAGUA-GA| 3901 GU(A|UAAAG )GCAUAAGGU GGCUUAACUG CGAGAG(AGA CAU)CUCGAG CAGGUGC(GA 3961 AA)GC-AGGU |CUUAGUGAU CCGGUGGUCC CG(AGUGGA) AGG|GCCAUC GCUAAAC|GG 4021 ACAAAAGGUA CUC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UUC-AUA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GGAG 4141 C---A)-GGU CCCAAGGGU| UUGGC(UGUU C)GC-CAAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-A~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS T.pallid.A 4759 bp RNA RNA 16-JUL-1998 DEFINITION Treponema pallidum.; . ACCESSION AE0012 4 AE00 520 KEYWORDS . SOURCE Treponema pallidum. ORGANISM Treponema pallidum. REFERENCE 1 (bases 1 to 12774) AUTHORS Utterback,T., McDonald,L., Artiach,P., Bowman,C., Cotton,M.D., Fujii,C., Garland,S., Hatch,B., Horst,K., Roberts,K., Watthey ,L., Weidman,J., Smith,H.O. and Venter,J.C. Fraser,C.M., Norris,S.J., Weinstock,G.M., White,O., Sutton,G.G ., Dodson,R., Gwinn,M., Hickey,E.K., Clayton,R., Ketchum,K.A., Sodergren,E., Hardham,J.M., McLeod,M.P., Salzberg,S., Peterson ,J., Khalak,H., Richardson,D., Howell,J.K., Chidambaram,M., TITLE Complete Genome Sequence of Treponema pallidum, the Syphilis Spirochete JOURNAL Science 281, 375-388 (1998) STANDARD No information REFERENCE 2 (bases 1 to 12774) AUTHORS Fraser,C.M., Norris,S.J., Weinstock,G.M., White,O., Sutton,G.G., Dodson,R., Gwinn,M., Hickey,E.K., Clayton,R., Ketchum,K.A., Sodergren,E., Hardham,J.M., McLeod,M.P., Salzberg,S., Peterson,J., Khalak,H., Richardson,D., Howell, J.K., Chidambaram,M., Utterback,T., McDonald,L., Artiach,P., Bowman,C., Cotton,M.D., Fujii,C., Garland,S., Hatch,B., Horst,K., Roberts,K., Watthey,L., Weidman,J., Smith,H.O. and Venter,J.C. TITLE Direct Submission JOURNAL Submitted (06-MAR-1998) The Institute for Genomic Research, 9712 Medical Center Dr, Rockville, MD 20850, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: AE001204 BASE COUNT 785 a 599 c 940 g 629 t 1806 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UCAAGCGAA- --UAGUGGUU UACGGUGGAU 121 G|UCUUGG|A GUUGUC|AG| GC-GAUGAAG GU|CGUG(AU AA-GC-)U|- GCG-AAAAGC 181 CUCGGG|-GA GGA(G-CA-C AUG-)UCCUG UG-AUC-CGG GGAUG|ACCG AAUGGG(GUA 241 A)CCC|GACA GGG-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uaaag)- CCUUGUC-AU UG-CCUUCC( 481 ugaaugaaua g-)GGA-GGG -U-A--AGG- CGAAAC|UG- GGUGAACU|G A(ACCA)UCU 541 AAGUA-ACUU G-GGAAAAGA AAUC(-AAGA --)GAGAU|U CC-GAAAGUA GU(GGCGA)G 601 CGA-AAU-UG GA-GGA-GCC UAAAccugu- ---------- -----(gucu a)-------- 661 -------aca gggguuguag ggccgcg--- --------cg ggc(--uugc --)guucg-- 721 -----guggg ugaaauaauc cggccuau-a gcaGAAa-gg u-u(uuggga a)a-gccuga 781 |c(aga)gaG GG(UGAAAUC )CCCGU-Aug c-ggaauggg gcgga----- ------ccug 841 cugg------ ----ugcggu -aCCU---GA GUACGGCGGG A(CACGAG-G AA)UCCUGUC 901 GGAAUCU-GG G-UC(GACCA C)GA-UCU-A AGGCUAA--- -AUACUCGAC AACUACCGAU 961 AGUG-GAC-A AGUACC(GUG A)-GGGA-AA GAUGAAAA-G AACCCC(GGU GA-)GGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCGU-AAACC AACAA-G-AU GUUACAGCCU ---------- 1081 --------(- ---guga--) ---------- -------GGG UGGUAGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -GCCUGCGAG UUAC-GGUG- UGCAGC-AAG GUUAAGGGA( UAGGAG)UCC 1201 U-GGAGCCGG AGG(GAAA-) CCGAGUCU(U AA-AA)GGGC Gu-------- ---------- 1261 ---------- ----ggu-ga G-UUGUACGU CGUA-GACCC GAAGC-CAGG GUGA-UCUAG 1321 UUAUGAG|CA GGUUGAAACA GGGG(UGAA) GC-CUUGUGG AGGACCGAAC U-AUAAUCU( 1381 -GUUAAAAA) AGGUA|UGG- AUGAC-UUGU GACUAGGAGU (-GAAAG)GC UAAACAAACC 1441 UGGAGAUAGC UGGUUCUCCC CGAAAUGCCU (-UUAG)GGA CAGC|-CUUA UACa----A| 1501 -AAC|UGUCG G|AGGUAA|A GC-ACUGG-A UGGGCUA-GG |-GGGUU(uc au-)CGCCUA 1561 CCAAACCCAA -UCAAACUCU GAA-UG-|CC G-G-C-A--- GUCA---AC| GUG-UGGGAG 1621 UGAGAC--UG C-GUGC(GAC AAG)GUUCGU -AGUC-GAGA GGG(-AAACA G-)CCCAGAC 1681 CGUCAGCUAA G-GU|CCCG- AAA-U-ACCG -CUUGA-GUG ------UGAA AUGAAGUG-U 1741 GGGUACCUG- GACAGCCAGG AGGUUGGC(U UAGAAGCA)G CCAUUCCU|U (GAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CGA GU-ACG-CA- -UGC|GCAGA UAAU-GUAU- 1861 CGGGGCU-AA GCGGU-A|U| ACCGAAGCU| ACGG|gucuu gcauu--(uu u--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---g gugcaaggc- GG-UAGGGGA G|-----CAU 2221 U-CCA-UGU- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --A-CUGA-U 2341 GAAGGAA-Ua U-CC(-GGGA -)GGA--GUU CUGG|AGGGG A-UGGAAGAG AGAAUGC-AG 2401 GU|AUA-AGU AC-ACGAAAA GGAGGG(UGA GAUU)CCUUC C|CGCC-GAA AACCUAAGGU 2461 UUCCUG-GGU GAAG-(GUCA U)CU|G-CUC AGGGUAAGU| CGG|C-CCCU AAGGCGAGGA 2521 C(GAGG)-G- UCGU-AGUCG AUGG-GAAUC CGG-(UU-UA UAUU)C-CGG A|AC|cu-c- 2581 uu-gca-auu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------ucga u------ggc a--gga-cgc gugaggugaa gccc-g-|gc c-aaa(ga-- 2761 uuggua-gu- --)uu-uggu c|uaa----- ---------- ---guauccg agccguuuua 2821 --agagc-ga uagg(ca-aa -u-)cc|g-- ucguucga-- ---------- -ggu-aaggu 2881 gcg-agug|c ga-|------ ----cuggag c(-gauga-) gcgaagg--- ------gaag 2941 --caggu-gu aguc-aug-| gcgacgggaa auacuguc-u aagguu---- ------aggu 3001 -ugcaa--ga g|A|CCGUAC CGCAAACC(G ACACA)GG|U AG-GUAGGA- U-(GAGUA)A 3061 UCUAAGGCGC ||UCGAGAGA ACUCGCGUC- ---------- ----AAGGAA CUCGGCAAAA 3121 UACACACGUA AC(-CUCG)G GAGAAGUGUG |ACCCUU--- ---------- --------gc 3181 c(-uuu--)g gu-------- ---------- --GAGGG-U| G(GCA)GAAA GCAGGUC-CA 3241 GG|CGACU-- ---GU(UUAU CAAAA)ACAU AGCCAUCUG| CAAAUCA(GU AA------)U 3301 GAGACGU-AU AGGUGGUGA- CACCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGAGGUUC 3361 GUG------- (G-UAA)--- -------CAC AA-CGCUUUG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AUGGUGUAAC GAcUCUGGAC ACUGUCUCGA CGCGAGACUC 3541 G|GUGAAAUU |UAUGUAC-C GG(UAAAGAA G)CCGGUUAC CCAUAGU-UA GACGGAAAGA 3601 CCCCGUGA|A CCU-UCACCG U|AGCUUACU AUU|GGAACU UGGUUUACCA UGUGUAGUAU 3661 AGGUGGGAGA CAGAGAAG-- CUUGGCC(GU CA)GGUUAGG CGGAGUCAAC -A-GUGAAAU 3721 ACCACC|CUU G-GUACGUCA GGU-UUCUAA -CCU-UUG-- -GCCG(-ugg -AUC)-CGGC 3781 AAAGG-GACC GUGGUAGGUG GG-CGGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAGG 3841 UAAC)GGAGG U|G|C|GCGA AGGUCUCC|U CACACCGG(U UGGAAA)UCG GUGCGC-GA| 3901 GU(G|UAAAG )GCACAAGGA GGCUUAACUG CGAGAC(CGA CAG)GUCGAG CAGAUAC(GA 3961 AA)GU-AGGU |CUUAGUGAU CUGGCGGUAG CG(UGUGGA) AGC|GCCGUC ACUUAAC|GG 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UGA--UUUUC CCCAAGA(G- UUC-ACA)UC 4081 GACGGGA-AA GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GAAG 4141 C---A)-GGU CCCAAGGGU| UUGGC(UGUU C)GC-CAAUU AAAGCGGUAC G-UGAGCUGG 4201 GUUCA-GAAC |GUC(GCGA) -GACAGUU-C GGU-CCCUAU -CU|GCUAUG G-G|CG-UUG 4261 GAUAUGU|GA -|GAGGAGC- UGC------- -------UUU (UAGUAC(GA GA)GGACC)G 4321 AAGUGG|ACG AACCUCUGGU GUACCAGU|U AUCCU(GC-C A-)AGGGUAC GUGCUGGGUA 4381 GCU-AUGUUC GGAAGGGAUA ACCGCU(GAA GGCAUCUA)A GUGGGAAGCC CGCCUC|AAG 4441 AUUACAUAUC C|CU|gaagg -(--uuga)- ccuuc-CUG- AAGA|-CU|C CUUG-(CACA 4501 CU-A)CAAGG -UCGAUAG|G CUGG|AGGUC -UACGUACC- -(GUAA-)-- GGUAU|UA-A 4561 GCCG|A|CCA GUACUAAUA- AGUCGUGAG| GCUUGA-CCA U-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS T.pallid.B 4759 bp RNA RNA 16-JUL-1998 DEFINITION Treponema pallidum.; . ACCESSION AE0012 8 AE00 520 KEYWORDS . SOURCE Treponema pallidum. ORGANISM Treponema pallidum. REFERENCE 1 (bases 1 to 12697) AUTHORS Utterback,T., McDonald,L., Artiach,P., Bowman,C., Cotton,M.D., Fujii,C., Garland,S., Hatch,B., Horst,K., Roberts,K., Watthey ,L., Weidman,J., Smith,H.O. and Venter,J.C. Fraser,C.M., Norris,S.J., Weinstock,G.M., White,O., Sutton,G.G ., Dodson,R., Gwinn,M., Hickey,E.K., Clayton,R., Ketchum,K.A., Sodergren,E., Hardham,J.M., McLeod,M.P., Salzberg,S., Peterson ,J., Khalak,H., Richardson,D., Howell,J.K., Chidambaram,M., TITLE Complete Genome Sequence of Treponema pallidum, the Syphilis Spirochete JOURNAL Science 281, 375-388 (1998) STANDARD No information REFERENCE 2 (bases 1 to 12697) AUTHORS Fraser,C.M., Norris,S.J., Weinstock,G.M., White,O., Sutton,G.G., Dodson,R., Gwinn,M., Hickey,E.K., Clayton,R., Ketchum,K.A., Sodergren,E., Hardham,J.M., McLeod,M.P., Salzberg,S., Peterson,J., Khalak,H., Richardson,D., Howell, J.K., Chidambaram,M., Utterback,T., McDonald,L., Artiach,P., Bowman,C., Cotton,M.D., Fujii,C., Garland,S., Hatch,B., Horst,K., Roberts,K., Watthey,L., Weidman,J., Smith,H.O. and Venter,J.C. TITLE Direct Submission JOURNAL Submitted (06-MAR-1998) The Institute for Genomic Research, 9712 Medical Center Dr, Rockville, MD 20850, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: AE001208 BASE COUNT 785 a 599 c 940 g 629 t 1806 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UCAAGCGAA- --UAGUGGUU UACGGUGGAU 121 G|UCUUGG|A GUUGUC|AG| GC-GAUGAAG GU|CGUG(AU AA-GC-)U|- GCG-AAAAGC 181 CUCGGG|-GA GGA(G-CA-C AUG-)UCCUG UG-AUC-CGG GGAUG|ACCG AAUGGG(GUA 241 A)CCC|GACA GGG-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uaaag)- CCUUGUC-AU UG-CCUUCC( 481 ugaaugaaua g-)GGA-GGG -U-A--AGG- CGAAAC|UG- GGUGAACU|G A(ACCA)UCU 541 AAGUA-ACUU G-GGAAAAGA AAUC(-AAGA --)GAGAU|U CC-GAAAGUA GU(GGCGA)G 601 CGA-AAU-UG GA-GGA-GCC UAAAccugu- ---------- -----(gucu a)-------- 661 -------aca gggguuguag ggccgcg--- --------cg ggc(--uugc --)guucg-- 721 -----guggg ugaaauaauc cggccuau-a gcaGAAa-gg u-u(uuggga a)a-gccuga 781 |c(aga)gaG GG(UGAAAUC )CCCGU-Aug c-ggaauggg gcgga----- ------ccug 841 cugg------ ----ugcggu -aCCU---GA GUACGGCGGG A(CACGAG-G AA)UCCUGUC 901 GGAAUCU-GG G-UC(GACCA C)GA-UCU-A AGGCUAA--- -AUACUCGAC AACUACCGAU 961 AGUG-GAC-A AGUACC(GUG A)-GGGA-AA GAUGAAAA-G AACCCC(GGU GA-)GGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCGU-AAACC AACAA-G-AU GUUACAGCCU ---------- 1081 --------(- ---guga--) ---------- -------GGG UGGUAGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -GCCUGCGAG UUAC-GGUG- UGCAGC-AAG GUUAAGGGA( UAGGAG)UCC 1201 U-GGAGCCGG AGG(GAAA-) CCGAGUCU(U AA-AA)GGGC Gu-------- ---------- 1261 ---------- ----ggu-ga G-UUGUACGU CGUA-GACCC GAAGC-CAGG GUGA-UCUAG 1321 UUAUGAG|CA GGUUGAAACA GGGG(UGAA) GC-CUUGUGG AGGACCGAAC U-AUAAUCU( 1381 -GUUAAAAA) AGGUA|UGG- AUGAC-UUGU GACUAGGAGU (-GAAAG)GC UAAACAAACC 1441 UGGAGAUAGC UGGUUCUCCC CGAAAUGCCU (-UUAG)GGA CAGC|-CUUA UACa----A| 1501 -AAC|UGUCG G|AGGUAA|A GC-ACUGG-A UGGGCUA-GG |-GGGUU(uc au-)CGCCUA 1561 CCAAACCCAA -UCAAACUCU GAA-UG-|CC G-G-C-A--- GUCA---AC| GUG-UGGGAG 1621 UGAGAC--UG C-GUGC(GAC AAG)GUUCGU -AGUC-GAGA GGG(-AAACA G-)CCCAGAC 1681 CGUCAGCUAA G-GU|CCCG- AAA-U-ACCG -CUUGA-GUG ------UGAA AUGAAGUG-U 1741 GGGUACCUG- GACAGCCAGG AGGUUGGC(U UAGAAGCA)G CCAUUCCU|U (GAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CGA GU-ACG-CA- -UGC|GCAGA UAAU-GUAU- 1861 CGGGGCU-AA GCGGU-A|U| ACCGAAGCU| ACGG|gucuu gcauu--(uu u--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---g gugcaaggc- GG-UAGGGGA G|-----CAU 2221 U-CCA-UGU- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --A-CUGA-U 2341 GAAGGAA-Ua U-CC(-GGGA -)GGA--GUU CUGG|AGGGG A-UGGAAGAG AGAAUGC-AG 2401 GU|AUA-AGU AC-ACGAAAA GGAGGG(UGA GAUU)CCUUC C|CGCC-GAA AACCUAAGGU 2461 UUCCUG-GGU GAAG-(GUCA U)CU|G-CUC AGGGUAAGU| CGG|C-CCCU AAGGCGAGGA 2521 C(GAGG)-G- UCGU-AGUCG AUGG-GAAUC CGG-(UU-UA UAUU)C-CGG A|AC|cu-c- 2581 uu-gca-auu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------ucga u------ggc a--gga-cgc gugaggugaa gccc-g-|gc c-aaa(ga-- 2761 uuggua-gu- --)uu-uggu c|uaa----- ---------- ---guauccg agccguuuua 2821 --agagc-ga uagg(ca-aa -u-)cc|g-- ucguucga-- ---------- -ggu-aaggu 2881 gcg-agug|c ga-|------ ----cuggag c(-gauga-) gcgaagg--- ------gaag 2941 --caggu-gu aguc-aug-| gcgacgggaa auacuguc-u aagguu---- ------aggu 3001 -ugcaa--ga g|A|CCGUAC CGCAAACC(G ACACA)GG|U AG-GUAGGA- U-(GAGUA)A 3061 UCUAAGGCGC ||UCGAGAGA ACUCGCGUC- ---------- ----AAGGAA CUCGGCAAAA 3121 UACACACGUA AC(-CUCG)G GAGAAGUGUG |ACCCUU--- ---------- --------gc 3181 c(-uuu--)g gu-------- ---------- --GAGGG-U| G(GCA)GAAA GCAGGUC-CA 3241 GG|CGACU-- ---GU(UUAU CAAAA)ACAU AGCCAUCUG| CAAAUCA(GU AA------)U 3301 GAGACGU-AU AGGUGGUGA- CACCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGAGGUUC 3361 GUG------- (G-UAA)--- -------CAC AA-CGCUUUG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AUGGUGUAAC GAcUCUGGAC ACUGUCUCGA CGCGAGACUC 3541 G|GUGAAAUU |UAUGUAC-C GG(UAAAGAA G)CCGGUUAC CCAUAGU-UA GACGGAAAGA 3601 CCCCGUGA|A CCU-UCACCG U|AGCUUACU AUU|GGAACU UGGUUUACCA UGUGUAGUAU 3661 AGGUGGGAGA CAGAGAAG-- CUUGGCC(GU CA)GGUUAGG CGGAGUCAAC -A-GUGAAAU 3721 ACCACC|CUU G-GUACGUCA GGU-UUCUAA -CCU-UUG-- -GCCG(-ugg -AUC)-CGGC 3781 AAAGG-GACC GUGGUAGGUG GG-CGGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAGG 3841 UAAC)GGAGG U|G|C|GCGA AGGUCUCC|U CACACCGG(U UGGAAA)UCG GUGCGC-GA| 3901 GU(G|UAAAG )GCACAAGGA GGCUUAACUG CGAGAC(CGA CAG)GUCGAG CAGAUAC(GA 3961 AA)GU-AGGU |CUUAGUGAU CUGGCGGUAG CG(UGUGGA) AGC|GCCGUC ACUUAAC|GG 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UGA--UUUUC CCCAAGA(G- UUC-ACA)UC 4081 GACGGGA-AA GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GAAG 4141 C---A)-GGU CCCAAGGGU| UUGGC(UGUU C)GC-CAAUU AAAGCGGUAC G-UGAGCUGG 4201 GUUCA-GAAC |GUC(GCGA) -GACAGUU-C GGU-CCCUAU -CU|GCUAUG G-G|CG-UUG 4261 GAUAUGU|GA -|GAGGAGC- UGC------- -------UUU (UAGUAC(GA GA)GGACC)G 4321 AAGUGG|ACG AACCUCUGGU GUACCAGU|U AUCCU(GC-C A-)AGGGUAC GUGCUGGGUA 4381 GCU-AUGUUC GGAAGGGAUA ACCGCU(GAA GGCAUCUA)A GUGGGAAGCC CGCCUC|AAG 4441 AUUACAUAUC C|CU|gaagg -(--uuga)- ccuuc-CUG- AAGA|-CU|C CUUG-(CACA 4501 CU-A)CAAGG -UCGAUAG|G CUGG|AGGUC -UACGUACC- -(GUAA-)-- GGUAU|UA-A 4561 GCCG|A|CCA GUACUAAUA- AGUCGUGAG| GCUUGA-CCA U-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS B.burgdo.1 4759 bp RNA RNA 11-JAN-191 DEFINITION Borrelia burgdorferi. ACCESSION No information KEYWORDS No information. SOURCE Borrelia burgdorferi. ORGANISM Borrelia burgdorferi. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: M88330 LOCUS BORRG23S 2926 bp ds-DNA BCT 23-SEP-1992 DEFINITION Borrelia burgdorferi 23S ribosomal RNA gene. ACCESSION M88330 KEYWORDS 23S ribosomal RNA. SOURCE Borrelia burgdorferi DNA. ORGANISM Borrelia burgdorferi Prokaryotae; Gracilicutes; Scotobacteria; Spirochetes; Spirochaetales; Spirochaetaceae. REFERENCE 1 (bases 1 to 2926) AUTHORS Schwartz,I., Gazumyan,A. and Schwartz,J.J. TITLE Sequence and Structure of the Ribosomal RNA Genes of Borrelia burgdorferi JOURNAL Unpublished (1992) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 1..2926 /product="23S ribosomal RNA" /gene="23S rRNA" /note="putative" BASE COUNT 910 a 492 c 804 g 720 t ORIGIN BASE COUNT 910 a 492 c 804 g 720 t 1833 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UCAAAGUAA- --UAAGAGUC UAUGGUGAAU 121 G|CCUAGG|A GCUUUA|AG| GC-GAAGAAG GU|CGUG(GU AA-GC-)U|- GCG-AAAAGC 181 UUGGGG|-GA GAA(G-CA-A ACA-)UUUAU UG-AUC-CCA AGAUU|ACCG AAUGGA(GUA 241 A)UCC|AGCU AGC-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---aagau)- GCUAGCU-AU CU-AUUAU-( 481 ----uuaa-- --)-AU-AAU -A-G--AGG- CGAUAC|CAG GGGGAAGU|G A(ACCA)UCU 541 AAGUA-CCCU GAGGAAAAGA AAUC(-AAG- --)GAGAU|U CC-CUUAGUA GU(GGCGA)G 601 CGA-AAA-GG GA-GUA-GCC CAAAcuuuaa -augugucaa --gcu(gcag -)---agc-g 661 uugcauuuau gggguuguag gacguuuag- --------gc uua(gucugu aa)uaagcaa 721 aaa------a guuacaaaau auuuauau-a gaaGAAu-aa u-c(u-ggaa a)g-uuuaac 781 |c(aaa)gaA GG(UGAUAGU )CCUGU-Aau u-uaaaugua aauaucuuuu ua-------- 841 ---------- ----aaaugu -uccu---GA GUAGGACGAG G(CACGAG-A AA)CCUUGUU 901 UGAAGCU-GG G-GA(GACCA C)UC-UCC-A AGGCUAA--- -AUACUAGAA AGCUACCGAU 961 AGAG-AA--G AGUACC(GUG A)-GGGA-AA GGUGAAAA-G AACCCC(GG- GA-)GGGGA- 1021 -GUGAAA-UA GAA-CUGAAA CCGU-AGACU UACAA-G-CA GUCAAAGCCG -uaa------ 1081 --------(- ---uuua--) ---------- ---uug-CGG UGAUGGCGUG CCU(UUU-GC 1141 AU|A)AUGA| -ACCUGCGAG UUAU-CAUG- UCUAGC-AAG AUUAAAGCA( UAGAAG)UGC 1201 U-GGAGUCGA AGC(GAAA-) GCGAGUCU(U AA-AA)GGGC GA-------- ---------- 1261 ---------- -----uu-ua G-UUAGAUGU GGUA-GACCC GAAGC-CGA- GUGA-UCUAU 1321 UUAUGGC|CA GGCUGAAGCU UGGG(UAAA) AC-CAAGUGG AGGGCCGAAC U-CUAGUCU( 1381 -GUUUAAAA) AGGCA|GGG- AUGAG-CUGU GAAUAGGAGU (-GAAAG)GC UAAACAAACU 1441 CGGAGAUAGC UGGUUCUCCC CGAAAUGGAU (-UUAA)GUU CAGC|-CUUA UUUu----A| 1501 -GUU|UAAUA G|AGGUAG|A GC-ACUAA-U UGAGCUA-GG |-GCCUG(uc aa-)AGGGUA 1561 CCAAACUCAG -UUAAACUCC GAA-UG-|CU A-U-U-A--- AAUG---AU| GAA-UAGGAG 1621 UGAGAC--UA U-GGGC(GAU AAG)GUUCAU -AGUC-GAGA GGG(-AAACA A-)CCCAGAC 1681 CAACAGCUAA G-GU|CUCA- AAA-A-UGUG -U-UAA-GUG ------GAAA AGGAGGUU-U 1741 AGGUACGUA- AACAGCCAGG AGGUUGGC(U UAGAAGCA)G CCAUACCU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CGA GU-ACU-UA- -AGC|GCCGA UAAU-GUAA- 1861 CGGGGCU-AA ACACA-U|U| ACCGAAGCU| UUGG|aucuu aac----(ga aa-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -guuaagau- GG-UAGGGGA G|-----CGU 2221 U-CUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCAG-A 2341 GAAGUUA-A- A-CU(-GGAA -)AGU--UUG AUGG|AGGUA U-CAGAAGUG AGAAUGC-AG 2401 GU|AUG-AGU A--ACGAAAA AAUGGG(UGA GAUU)CCCAU U|CGCC-GAA AACCUAAGGU 2461 UUCCUG-GGU AAAG-(GUCG U)CU|U-CCC AGG-UUAGU| CGG|U-CCCU AAGGCAAAGC 2521 U(GAAA)-A- GUGU-AGUCG AUGG-GAAAC GGG-(UU-AA UAUU)C-CCG U|AC|cu-c- 2581 uu-aua-guu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------ucga u------gga g--uga-cgc augagguuaa cuac-u-|gc u-agg(cg-- 2761 augguu-gu- --)cc-uagu -|uuaa---- ---------- ---gcau-ua aggugaug-- 2821 --aucuu-ga uagg(aa-aa -u-)cc|g-- uuaagaga-- ---------- -gcu-aagau 2881 gug-auga|u ga-|------ ----gugcua u(-uuag--) guagcau--- ------gaaa 2941 --uguag-gu aguc-aag-| gugccaagaa auagcuuc-u aagguu---- ------aggc 3001 -uauaa--gg g|A|CCGUAC CGCAAACC(G ACACA)GG|U AG-GUGGGA- U-(GAAAA)U 3061 UCUAAGGCGC ||GCGAGAGA AUCCACGUU- ---------- ----AAGGAA CUCUGCAAAA 3121 UACGUACGUA AC(-UUCG)G GAUAAGUACG |ACCUAA--- ---------- ---------- 3181 -(-gcaa-)- ---------- ---------- --UUAGG-U| A(GCA)UAAA AAUGGUC-CA 3241 AA|CGACU-- ---GU(UUAC CAAAA)ACAC AGGUCUCUG| CAAAUCU(GU AA------)A 3301 GAGAAGU-AU AGGGACUGA- CACCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGAUGUUA 3361 GU-------- (U-UAU)--- --------GC G--AACGUUG AAUUU-AG-C |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AUGGUGUAAC GA-UUUGGAC GCUGUCUCAA CGUGGAGCUC 3541 G|GUGAAAUU |GAAGUAU-C GG(UGAAGAU G)CCGAUUAC UUGUGGU-UA GACGGAAAGA 3601 -UCCGUGA|A CCUUUUACUA U|AGCUUGGU AUU|GAGAUU UGAUUAAAUA UGUGUAGGAU 3661 AGGUGGGAGA CUUUGAAG-- CUAUCUC(GU CA)GGGGUAG UGGAGUCAAU -C-UUGAAAU 3721 ACCACC|CUU G-UUUAAUUA GGU-UUCUAA -CUU-AUA-- -----(---G -AAA)----U 3781 AUGAG-GAGA GUGCCAGGUG GG-UAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AGAG 3841 UAAC)GGAGG U|G|C|GCAA AGGUUACC|U UAGAGUGG(U UGGAAA)UCA CUCUGU-AA| 3901 GU(G|UAAAG )GCAUAAGGU AGCUUAACUG UAAGAC(UGA CAA)GUCGAA CAGAUAC(GA 3961 AA)GU-AGGU |CUUAGUGAU CUGGCGGUGG CA(AGUGGA) AGC|GCCGUC ACUUAAC|GA 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UUA--UCCUU CCCAAGA(G- UUC-ACA)UC 4081 GACGGAA-GG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UA GGGCU(GGAG 4141 C---A)-GGU CCUAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-U GGU-CCCUAU -CU|GCCACA A-G|CG-UUG 4261 GAUAUUU|GA -|GAGGAGC- UAU------- -------CUU (UAGUAC(GA GA)GGACC)G 4321 AGAUGG|ACG AACCUCUAGU GUACCAGU|U AUCCU(GC-C A-)AGGGUAA GUGCUGGGUA 4381 GCU-ACGUUC GGAAAGGAUA ACCGCU(GAA AGCAUCUA)A GUGGGAAGCC UUCCUC|AAG 4441 AUGAGAUAUC C|UU|----- -(------)- -------UA- -AGG|-GU|C CUGG-(AAGA 4501 AU-A)CCAGG -UUGAUAG|G UUAG|AAGUG -UAAGUAUA- -(GCAA-)-- UAUAU|UA-A 4561 GCUG|A|CUA AUACUAAUU- ACCCGU-AU| CUUUGG-CCA U-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS B.burgdo.2 4759 bp RNA RNA 11-JAN-191 DEFINITION Borrelia burgdorferi. ACCESSION No information KEYWORDS No information. SOURCE Borrelia burgdorferi. ORGANISM Borrelia burgdorferi. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U03396 LOCUS BBRNAOPR 11955 bp DNA BCT 12-NOV-1993 DEFINITION Borrelia burgdorferi B31 Ala-tRNA (alaT), Ile-tRNA (ileT), 16S rRNA, 23S rRNA (rrlA and rrlB), and 5S rRNA (rrfA and rrfB) genes, complete sequence. ACCESSION U03396 KEYWORDS . SOURCE Lyme disease spirochete ORGANISM Borrelia burgdorferi Eubacteria; Gracilicutes; Scotobacteria; The Spirochetes; Spirochaetales; Spirochaetaceae; Borrelia. REFERENCE 1 (bases 1 to 11955) AUTHORS Gazumyan,A., Schwartz,J.J., Liveris,D. and Schwartz,I. TITLE Sequence Analysis of the Ribosomal RNA Operon of the Lyme Disease Spirochete, Borrelia burgdorferi JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 11955) AUTHORS Schwartz,I. TITLE Direct Submission JOURNAL Submitted (10-NOV-1993) Schwartz I., New York Medical College, Dept. of Biochemistry and Molecular Biology, Valhalla, NY 10559, USA STANDARD full automatic FEATURES Location/Qualifiers rRNA 841..2377 /product="16S ribosomal RNA" tRNA 2549..2622 /product="Ala-tRNA" /gene="alaT" /anticodon=(pos:2583..2585,aa:Ala) tRNA complement(3262..3335) /product="Ile-tRNA" /gene="ileT" /anticodon=(pos:3299..3301,aa:Ile) rRNA 5430..8355 /product="23S ribosomal RNA" /gene="rrlA" rRNA 8378..8489 /product="5S ribosomal RNA" /evidence=EXPERIMENTAL /gene="rrfA" rRNA 8672..11597 /product="23S ribosomal RNA" /gene="rrlB" rRNA 11620..11731 /product="5S ribosomal RNA" /gene="rrfB" source 1..11955 /strain="B31" /organism="Borrelia burgdorferi" BASE COUNT 3836 a 1739 c 2835 g 3545 t ORIGIN BASE COUNT 910 a 492 c 804 g 720 t 1833 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UCAAAGUAA- --UAAGAGUC UAUGGUGAAU 121 G|CCUAGG|A GCUUUA|AG| GC-GAAGAAG GU|CGUG(GU AA-GC-)U|- GCG-AAAAGC 181 UUGGGG|-GA GAA(G-CA-A ACA-)UUUAU UG-AUC-CCA AGAUU|ACCG AAUGGA(GUA 241 A)UCC|AGCU AGC-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---aagau)- GCUAGCU-AU CU-AUUAU-( 481 ----uuaa-- --)-AU-AAU -A-G--AGG- CGAUAC|CAG GGGGAAGU|G A(ACCA)UCU 541 AAGUA-CCCU GAGGAAAAGA AAUC(-AAG- --)GAGAU|U CC-CUUAGUA GU(GGCGA)G 601 CGA-AAA-GG GA-GUA-GCC CAAAcuuuaa -augugucaa --gcu(gcag -)---agc-g 661 uugcauuuau gggguuguag gacguuuag- --------gc uua(gucugu aa)uaagcaa 721 aaa------a guuacaaaau auuuauau-a gaaGAAu-aa u-c(u-ggaa a)g-uuuaac 781 |c(aaa)gaA GG(UGAUAGU )CCUGU-Aau u-uaaaugua aauaucuuuu ua-------- 841 ---------- ----aaaugu -uccu---GA GUAGGACGAG G(CACGAG-A AA)CCUUGUU 901 UGAAGCU-GG G-GA(GACCA C)UC-UCC-A AGGCUAA--- -AUACUAGAA AGCUACCGAU 961 AGAG-AA--G AGUACC(GUG A)-GGGA-AA GGUGAAAA-G AACCCC(GG- GA-)GGGGA- 1021 -GUGAAA-UA GAA-CUGAAA CCGU-AGACU UACAA-G-CA GUCAAAGCCG -uaa------ 1081 --------(- ---uuua--) ---------- ---uug-CGG UGAUGGCGUG CCU(UUU-GC 1141 AU|A)AUGA| -ACCUGCGAG UUAU-CAUG- UCUAGC-AAG AUUAAAGCA( UAGAAG)UGC 1201 U-GGAGUCGA AGC(GAAA-) GCGAGUCU(U AA-AA)GGGC GA-------- ---------- 1261 ---------- -----uu-ua G-UUAGAUGU GGUA-GACCC GAAGC-CGA- GUGA-UCUAU 1321 UUAUGGC|CA GGCUGAAGCU UGGG(UAAA) AC-CAAGUGG AGGGCCGAAC U-CUAGUCU( 1381 -GUUUAAAA) AGGCA|GGG- AUGAG-CUGU GAAUAGGAGU (-GAAAG)GC UAAACAAACU 1441 CGGAGAUAGC UGGUUCUCCC CGAAAUGGAU (-UUAA)GUU CAGC|-CUUA UUUu----A| 1501 -GUU|UAAUA G|AGGUAG|A GC-ACUAA-U UGAGCUA-GG |-GCCUG(uc aa-)AGGGUA 1561 CCAAACUCAG -UUAAACUCC GAA-UG-|CU A-U-U-A--- AAUG---AU| GAA-UAGGAG 1621 UGAGAC--UA U-GGGC(GAU AAG)GUUCAU -AGUC-GAGA GGG(-AAACA A-)CCCAGAC 1681 CAACAGCUAA G-GU|CUCA- AAA-A-UGUG -U-UAA-GUG ------GAAA AGGAGGUU-U 1741 AGGUACGUA- AACAGCCAGG AGGUUGGC(U UAGAAGCA)G CCAUACCU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CGA GU-ACU-UA- -AGC|GCCGA UAAU-GUAA- 1861 CGGGGCU-AA ACACA-U|U| ACCGAAGCU| UUGG|aucuu aac----(ga aa-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -guuaagau- GG-UAGGGGA G|-----CGU 2221 U-CUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCAG-A 2341 GAAGUUA-A- A-CU(-GGAA -)AGU--UUG AUGG|AGGUA U-CAGAAGUG AGAAUGC-AG 2401 GU|AUG-AGU A--ACGAAAA AAUGGG(UGA GAUU)CCCAU U|CGCC-GAA AACCUAAGGU 2461 UUCCUG-GGU AAAG-(GUCG U)CU|U-CCC AGG-UUAGU| CGG|U-CCCU AAGGCAAAGC 2521 U(GAAA)-A- GUGU-AGUCG AUGG-GAAAC GGG-(UU-AA UAUU)C-CCG U|AC|cu-c- 2581 uu-aua-guu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------ucga u------gga g--uga-cgc augagguuaa cuac-u-|gc u-agg(cg-- 2761 augguu-gu- --)cc-uagu -|uuaa---- ---------- ---gcau-ua aggugaug-- 2821 --aucuu-ga uagg(aa-aa -u-)cc|g-- uuaagaga-- ---------- -gcu-aagau 2881 gug-auga|u ga-|------ ----gugcua u(-uuag--) guagcau--- ------gaaa 2941 --uguag-gu aguc-aag-| gugccaagaa auagcuuc-u aagguu---- ------aggc 3001 -uauaa--gg g|A|CCGUAC CGCAAACC(G ACACA)GG|U AG-GUGGGA- U-(GAAAA)U 3061 UCUAAGGCGC ||GCGAGAGA AUCCACGUU- ---------- ----AAGGAA CUCUGCAAAA 3121 UACGUACGUA AC(-UUCG)G GAUAAGUACG |ACCUAA--- ---------- ---------- 3181 -(-gcaa-)- ---------- ---------- --UUAGG-U| A(GCA)UAAA AAUGGUC-CA 3241 AA|CGACU-- ---GU(UUAC CAAAA)ACAC AGGUCUCUG| CAAAUCU(GU AA------)A 3301 GAGAAGU-AU AGGGACUGA- CACCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGAUGUUA 3361 GU-------- (U-UAU)--- --------GC G--AACGUUG AAUUU-AG-C |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AUGGUGUAAC GA-UUUGGAC GCUGUCUCAA CGUGGAGCUC 3541 G|GUGAAAUU |GAAGUAU-C GG(UGAAGAU G)CCGAUUAC UUGUGGU-UA GACGGAAAGA 3601 -UCCGUGA|A CCUUUUACUA U|AGCUUGGU AUU|GAGAUU UGAUUAAAUA UGUGUAGGAU 3661 AGGUGGGAGA CUUUGAAG-- CUAUCUC(GU CA)GGGGUAG UGGAGUCAAU -C-UUGAAAU 3721 ACCACC|CUU G-UUUAAUUA GGU-UUCUAA -CUU-AUA-- -----(---G -AAA)----U 3781 AUGAG-GAGA GUGCCAGGUG GG-UAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AGAG 3841 UAAC)GGAGG U|G|C|GCAA AGGUUACC|U UAGAGUGG(U UGGAAA)UCA CUCUGU-AA| 3901 GU(G|UAAAG )GCAUAAGGU AGCUUAACUG UAAGAC(UGA CAA)GUCGAA CAGAUAC(GA 3961 AA)GU-AGGU |CUUAGUGAU CUGGCGGUGG CA(AGUGGA) AGC|GCCGUC ACUUAAC|GA 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UUA--UCCUU CCCAAGA(G- UUC-ACA)UC 4081 GACGGAA-GG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UA GGGCU(GGAG 4141 C---A)-GGU CCUAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-U GGU-CCCUAU -CU|GCCACA A-G|CG-UUG 4261 GAUAUUU|GA -|GAGGAGC- UAU------- -------CUU (UAGUAC(GA GA)GGACC)G 4321 AGAUGG|ACG AACCUCUAGU GUACCAGU|U AUCCU(GC-C A-)AGGGUAA GUGCUGGGUA 4381 GCU-ACGUUC GGAAAGGAUA ACCGCU(GAA AGCAUCUA)A GUGGGAAGCC UUCCUC|AAG 4441 AUGAGAUAUC C|UU|----- -(------)- -------UA- -AGG|-GU|C CUGG-(AAGA 4501 AU-A)CCAGG -UUGAUAG|G UUAG|AAGUG -UAAGUAUA- -(GCAA-)-- UAUAU|UA-A 4561 GCUG|A|CUA AUACUAAUU- ACCCGU-AU| CUUUGG-CCA U-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS B.burgdo.3 4759 bp RNA RNA 11-JAN-191 DEFINITION Borrelia burgdorferi. ACCESSION No information KEYWORDS No information. SOURCE Borrelia burgdorferi. ORGANISM Borrelia burgdorferi. REFERENCE 1 (bases 1 to 12697) AUTHORS Klima,R., Coglievina,M. and Bruschi,C.V. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X85745 LOCUS BB23S5S 2093 bp DNA BCT 30-JUN-1995 DEFINITION B.burgdorferi 23S rRNA, 5S rRNA and 23S rRNA genes. ACCESSION X85745 KEYWORDS 23S rRNA gene; 5S rRNA gene; spirochete. SOURCE Lyme disease spirochete. ORGANISM Borrelia burgdorferi Eubacteria; Spirochaetales; Spirochaetaceae; Borrelia. REFERENCE 1 (bases 1 to 2093) AUTHORS Klima,R., Coglievina,M. and Bruschi,C.V. TITLE Molecular diagnosis of Lyme disease Spirochete infections JOURNAL Unpublished REFERENCE 2 (bases 1 to 2093) AUTHORS Bruschi,C.V. TITLE Direct Submission JOURNAL Submitted (20-MAR-1995) to the EMBL/GenBank/DDBJ databases. C.V. Bruschi, Microbiology group, International Centre for Genetic Engineering and Biotechnology, Area Science Park, Padriciano 99, I-34012 Trieste, ITALY COMMENT Related sequence: U03396. NCBI gi: 886435 FEATURES Location/Qualifiers source 1..2093 /organism="Borrelia burgdorferi" /sub_species="sensu stricto" /strain="B31" /clone_lib="M13mp19" /map="between tmpC and gyr'BA" rRNA <1..1699 /gene="23S rRNA" rRNA 1748..1833 /gene="5S rRNA" rRNA 2016..2093 /gene="23S rRNA" BASE COUNT 632 a 342 c 553 g 566 t ORIGIN BASE COUNT 498 a 302 c 473 g 426 t 3060 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ 1201 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 1381 ~~~~~~~~~) ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|~~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|*<~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~|~| ~~~~AAGCU| UUGG|aucuu aac----(ga aa-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -guuaagau- GG-UAGGGGA G|-----CGU 2221 U-CUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCAG-A 2341 GAAGUUA-A- A-CU(-GGAA -)AGU--UUG AUGG|AGGUA U-CAGAAGUG AGAAUGC-AG 2401 GU|AUG-AGU A--ACGAAAA AAUGGG(UGA GAUU)CCCAU U|CGCC-GAA AACCUAAGGU 2461 UUCCUG-GGU AAAG-(GUCG U)CU|U-CCC AGGGUUAGU| CGG|C-CCCU AAGGCAAAGC 2521 U(GAAA)-A- GUGU-AGUCG AUGG-GAAAC GGG-(UU-AA UAUU)C-CCG U|AC|cu-c- 2581 uu-aua-guu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------ucga u------gga g--uga-cgc augagguuaa cuac-u-|gc u-agg(cg-- 2761 augguu-gu- --)cc-uagu -|uuaa---- ---------- ---gcau-ua aggcgaug-- 2821 --aucuu-aa uagg(aa-aa -u-)cc|g-- uuaagaga-- ---------- -gcu-aagau 2881 gug-auga|u ga-|------ ----gugcua u(-uuag--) guagcau--- ------gaaa 2941 --uguag-gu aguc-aag-| gugccaagaa auagcuuc-u aagguu---- ------aggc 3001 -uauaa--gg g|A|CCGUAC CGCAAACC(G ACACA)GG|U AG-GUGGGA- U-(GAAAA)U 3061 UCUAAGGCGC ||GCGAGAGA AUCCACGUU- ---------- ----AAGGAA CUCUGCAAAA 3121 UACGUACGUA AC(-UUCG)G GAUAAGUACG |ACCUAA--- ---------- ---------- 3181 -(-gcaa-)- ---------- ---------- --UUAGG-U| A(GCA)UAAA AAUGGUC-CA 3241 AA|CGACU-- ---GU(UUAC CAAAA)ACAC AGGUCUCUG| CAAAUCU(GU AA------)A 3301 GAGAAGU-AU AGGGACUGA- CACCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGAUGUUA 3361 GU-------- (U-UAU)--- --------GC GA-AGCAUUG AAUUUAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AUGGUGUAAC GA-UUUGGAC GCUGUCUCAA CGUGGAGCUC 3541 G|GUGAAAUU |GAAGUAU-C GG(UGAAGAU G)CCGAUUAC UUGUGGU-UA GACGGAAAGA 3601 CCCCGUGA|A CCU-UUACUA U|AGCUUGGU AUU|GAGAUU UGAUUAAAUA UGUGUAGGAU 3661 AGGUGGGAGA CUUUGAAG-- CUAUCUC(GU CA)GGGGUAG UGGAGUCAAU -c-UUGAAAU 3721 ACCACC|CUU G-UUUAAUUA GGU-UUCUAA -CUU-AUA-- -----(---G -AAA)----U 3781 AUGAG-GAGA GUGCCAGGUG GG-UAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AGAG 3841 UAAC)GGAGG U|G|C|GCAA AGGUUACC|U UAGAGUGG(U UGGAAA)UCA CUCUGU-AA| 3901 GU(G|UAAAG )GCAUAAGGU AGCUUAACUG UAAGAC(UGA CAA)GUCGAA CAGAUAC(GA 3961 AA)GU-AGGU |CUUAGUGAU CUG-CGGUGG CA(AGUGGA) AGC|GCCGUC ACUUAAC|GA 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UUA--UCCUU CCCAAGA(G- UUC-ACA)UC 4081 GACGGAA-GG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UA GGGCU(GGAG 4141 C---A)-GGU CCUAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-U GGU-CCCUAU -CU|GCCACA A-G|CG-UUG 4261 GAUAUUU|GA -|GAGGAGC- UAU------- -------CUU (UAGUAC(GA GA)GGACC)G 4321 AGAUGG|ACG AACCUCUAGU GUACCAGU|U AUCCU(GC-C A-)AGGGUAA GUGCUGGGUA 4381 GCU-ACGUUC GGAAAGGAUA ACCGCU(GAA AGCAUCUA)A GUGGGAAGCC UUCCUC|AAG 4441 AUGAGAUAUC C|UU|----- -(------)- -------UA- -AGG|-GU|C CUGG-(AAGA 4501 AU-A)CCAGG -UCGAUAG|G UUAG|AAGUG -UAAGUAUA- -(GCAA-)-- UAUAU|UA-A 4561 GCUG|A|CUA AUACUAAUU- ACCCGU-AU| CUUUGG-CCA U-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS B.burgdo.4 4759 bp RNA RNA 15-DEC-1997 DEFINITION Borrelia burgdorferi.; . ACCESSION AE0011 7 AE00 783 KEYWORDS . SOURCE Borrelia burgdorferi. ORGANISM Borrelia burgdorferi. REFERENCE 1 (bases 1 to 11172) AUTHORS Salzberg,S., Hanson,M., van-Vugt,R., Palmer,N., Adams,M.D., Gocayne,J.D., Weidman,J., Utterback,T., Watthey,L., McDonald,L ., Artiach,P., Bowman,C., Garland,S., Fujii,C., Cotton,M.D., Horst,K., Roberts,K., Hatch,B., Smith,H.O. and Venter,J.C. Fraser,C.M., Casjens,S., Huang,W.M., Sutton,G.G., Clayton,R.A., Lathigra,R., White,O., Ketchum,K.A., Dodson,R., Hickey,E.K., Gwinn,M., Dougherty,B., Tomb,J.-F., Fleischmann,R.D., Richardson,D., Peterson,J., Kerlavage,A.R., Quackenbush,J., TITLE Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi JOURNAL Nature 390 (6660), 580-586 (1997) STANDARD No information REFERENCE 2 (bases 1 to 11172) AUTHORS Fraser,C.M., Casjens,S., Huang,W.M., Sutton,G.G., Clayton, R.A., Lathigra,R., White,O., Ketchum,K.A., Dodson,R., Hickey,E.K., Gwinn,M., Dougherty,B., Tomb,J.-F., Fleischmann,R.D., Richardson,D., Peterson,J., Kerlavage,A.R. , Quackenbush,J., Salzberg,S., Hanson,M., van-Vugt,R., Palmer,N., Adams,M.D., Gocayne,J.D., Weidman,J., Utterback, T., Watthey,L., McDonald,L., Artiach,P., Bowman,C., Garland, S., Fujii,C., Cotton,M.D., Horst,K., Roberts,K., Hatch,B., Smith,H.O. and Venter,J.C. TITLE Direct Submission JOURNAL Submitted (12-DEC-1997) The Institute for Genomic Research, 9712 Medical Center Dr, Rockville, MD 20850, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: AE001147 ****(212..3145) BASE COUNT 915 a 497 c 804 g 718 t 1825 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- ----auauGG UCAAAGUAA- --UAAGAGUC UAUGGUGAAU 121 G|CCUAGG|A GCUUUA|AG| GC-GAAGAAG GU|CGUG(GU AA-GC-)U|- GCG-AAAAGC 181 UUGGGG|-GA GAA(G-CA-A ACA-)UUUAU UG-AUC-CCA AGAUU|ACCG AAUGGA(GUA 241 A)UCC|AGCU AGC-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---aagau)- GCUAGCU-AU CU-AUUAU-( 481 ----uuaa-- --)-AU-AAU -A-G--AGG- CGAUAC|CA- GGGGAAGU|G A(ACCA)UCU 541 AAGUA-CCCU GAGGAAAAGA AAUC(-AAA- --)GAGAU|U CC-CUUAGUA GU(GGCGA)G 601 CGA-AAA-GG GA-GUA-GCC CAAAcuuuaa -augugucaa --gcu(gcag -)---agc-g 661 uugcauuuau gggguuguag gacguuuag- --------gc uua(gucugu aa)uaagcaa 721 aaa------a guuacaaaau auuuauau-a gaaGAAu-aa u-c(u-ggaa a)g-uuuaac 781 |c(aaa)gaA GG(UGAUAGU )CCUGU-Aau u-uaaaugua aauaucuuuu ua-------- 841 ---------- ----aaaugu -uccu---GA GUAGGACGAG G(CACGAG-A AA)CCUUGUU 901 UGAAGCU-GG G-GA(GACCA C)UC-UCC-A AGGCUAA--- -AUACUAGAA AGCUACCGAU 961 AGAG-AA--G AGUACC(GUG A)-GGGA-AA GGUGAAAA-G AACCCC(GG- GA-)GGGGA- 1021 -GUGAAA-UA GAA-CUGAAA CCGU-AGACU UACAA-G-CA GUCAAAGCCG -uaa------ 1081 --------(- ---uuua--) ---------- ---uug-CGG UGAUGGCGUG CCU(UUU-GC 1141 AU|A)AUGA| -ACCUGCGAG UUAU-CAUG- UCUAGC-AAG AUUAAAGCA( UAGAAG)UGC 1201 U-GGAGUCGA AGC(GAAA-) GCGAGUCU(U AA-AA)GGGC GA-------- ---------- 1261 ---------- -----uu-ua G-UUAGAUGU GGUA-GACCC GAAGC-CGA- GUGA-UCUAU 1321 UUAUGGC|CA GGCUGAAGCU UGGG(UAAA) AC-CAAGUGG AGGGCCGAAC U-CUAGUCU( 1381 -GUUUAAAA) AGGCA|GGG- AUGAG-CUGU GAAUAGGAGU (-GAAAG)GC UAAACAAACU 1441 CGGAGAUAGC UGGUUCUCCC CGAAAUGGAU (-UUAA)GUU CAGC|-CUUA UUUu----A| 1501 -GUU|UAAUA G|AGGUAG|A GC-ACUAA-U UGAGCUA-GG |-GCCUG(uc aa-)AGGGUA 1561 CCAAACUCAG -UUAAACUCC GAA-UG-|CU A-U-U-A--- AAUG---AU| GAA-UAGGAG 1621 UGAGAC--UA U-GGGC(GAU AAG)GUUCAU -AGUC-GAGA GGG(-AAACA A-)CCCAGAC 1681 CAACAGCUAA G-GU|CUCA- AAA-A-UGUG -U-UAA-GUG ------GAAA AGGAGGUU-U 1741 AGGUACGUA- AACAGCCAGG AGGUUGGC(U UAGAAGCA)G CCAUACCU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CGA GU-ACU-UA- -AGC|GCCGA UAAU-GUAA- 1861 CGGGGCU-AA ACACA-U|U| ACCGAAGCU| UUGG|aucuu aac----(ga aa-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -guuaagau- GG-UAGGGGA G|-----CGU 2221 U-CUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCAG-A 2341 GAAGUUA-A- G-CU(-GGAA -)AGU--UUG AUGG|AGGUA U-CAGAAGUG AGAAUGC-AG 2401 GU|AUG-AGU A--ACGAAAA AAUGGG(UGA GAUU)CCCAU U|CGCC-GAA AACCUAAGGU 2461 UUCCUG-GGU AAAG-(GUCG U)CU|U-CCC AGGGUUAGU| CGG|C-CCCU AAGGCAAAGC 2521 U(GAAA)-A- GUGU-AGUCG AUGG-GAAAC GGG-(UU-AA UAUU)C-CCG U|AC|cu-c- 2581 uu-aua-guu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------ucga u------gga g--uga-cgc augagguuaa cuac-u-|gc u-agg(cg-- 2761 augguu-gu- --)cc-uagu -|uuaa---- ---------- ---gcau-ua aggcgaug-- 2821 --aucuu-aa uagg(aa-aa -u-)cc|g-- uuaagaga-- ---------- -gcu-aagau 2881 gug-auga|u ga-|------ ----gugcua u(-uuag--) guagcau--- ------gaaa 2941 --uguag-gu aguc-aag-| gugccaagaa auagcuuc-u aagguu---- ------aggc 3001 -uauaa--gg g|A|CCGUAC CGCAAACC(G ACACA)GG|U AG-GUGGGA- U-(GAAAA)U 3061 UCUAAGGCGC ||GCGAGAGA AUCCACGUU- ---------- ----AAGGAA CUCUGCAAAA 3121 UACGUACGUA AC(-UUCG)G GAUAAGUACG |ACCUAA--- ---------- ---------- 3181 -(-gcaa-)- ---------- ---------- --UUAGG-U| A(GCA)UAAA AAUGGUC-CA 3241 AA|CGACU-- ---GU(UUAC CAAAA)ACAC AGGUCUCUG| CAAAUCU(GU AA------)A 3301 GAGAAGU-AU AGGGACUGA- CACCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGAUGUUA 3361 GU-------- (U-UAU)--- --------GC GA-AGCAUUG AAUUUAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AUGGUGUAAC GA-UUUGGAC GCUGUCUCAA CGUGGAGCUC 3541 G|GUGAAAUU |GAAGUAU-C GG(UGAAGAU G)CCGAUUAC UUGUGGU-UA GACGGAAAGA 3601 CCCCGUGA|A CCU-UUACUA U|AGCUUGGU AUU|GAGAUU UGAUUAAAUA UGUGUAGGAU 3661 AGGUGGGAGA CUUUGAAG-- CUAUCUC(GU CA)GGGGUAG UGGAGUCAAU -C-UUGAAAU 3721 ACCACC|CUU G-UUUAAUUA GGU-UUCUAA -CUU-AUA-- -----(---G -AAA)----U 3781 AUGAG-GAGA GUGCCAGGUG GG-UAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AGAG 3841 UAAC)GGAGG U|G|C|GCAA AGGUUACC|U UAGAGUGG(U UGGAAA)UCA CUCUGU-AA| 3901 GU(G|UAAAG )GCAUAAGGU AGCUUAACUG UAAGAC(UGA CAA)GUCGAA CAGAUAC(GA 3961 AA)GU-AGGU |CUUAGUGAU CUGGCGGUGG CA(AGUGGA) AGC|GCCGUC ACUUAAC|GA 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UUA--UCCUU CCCAAGA(G- UUC-ACA)UC 4081 GACGGAA-GG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UA GGGCU(GGAG 4141 C---A)-GGU CCUAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-U GGU-CCCUAU -CU|GCCACA A-G|CG-UUG 4261 GAUAUUU|GA -|GAGGAGC- UAU------- -------CUU (UAGUAC(GA GA)GGACC)G 4321 AGAUGG|ACG AACCUCUAGU GUGCCAGU|U AUCCU(GC-C A-)AGGGUAA GUGCUGGGUA 4381 GCU-ACGUUC GGAAAGGAUA ACCGCU(GAA AGCAUCUA)A GUGGGAAGCC UUCCUC|AAG 4441 AUGAGAUAUC C|UU|----- -(------)- -------UA- -AGG|-GU|C CUGG-(AAGA 4501 AU-A)CCAGG -UUGAUAG|G UUAG|AAGUG -UAAGUAUA- -(GCAA-)-- UAUAU|UA-A 4561 GCUG|A|CUA AUACUAAUU- ACCCGU-AU| CUUUGG-CCA UA------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS B.burgdo.5 4759 bp RNA RNA 15-DEC-1997 DEFINITION Borrelia burgdorferi.; . ACCESSION AE0011 7 AE00 783 KEYWORDS . SOURCE Borrelia burgdorferi. ORGANISM Borrelia burgdorferi. REFERENCE 1 (bases 1 to 11172) AUTHORS Horst,K., Roberts,K., Hatch,B., Smith,H.O. and Venter,J.C. Fraser,C.M., Casjens,S., Huang,W.M., Sutton,G.G., Clayton,R.A., Lathigra,R., White,O., Ketchum,K.A., Dodson,R., Hickey,E.K., Gwinn,M., Dougherty,B., Tomb,J.-F., Fleischmann,R.D., Richardson,D., Peterson,J., Kerlavage,A.R., Quackenbush,J., Salzberg,S., Hanson,M., van-Vugt,R., Palmer,N., Adams,M.D., Gocayne,J.D., Weidman,J., Utterback,T., Watthey,L., McDonald,L ., Artiach,P., Bowman,C., Garland,S., Fujii,C., Cotton,M.D., TITLE burgdorferi Genomic sequence of a Lyme disease spirochaete, Borrelia JOURNAL Nature 390 (6660), 580-586 (1997) STANDARD No information REFERENCE 2 (bases 1 to 11172) AUTHORS Fraser,C.M., Casjens,S., Huang,W.M., Sutton,G.G., Clayton, R.A., Lathigra,R., White,O., Ketchum,K.A., Dodson,R., Hickey,E.K., Gwinn,M., Dougherty,B., Tomb,J.-F., Fleischmann,R.D., Richardson,D., Peterson,J., Kerlavage,A.R. , Quackenbush,J., Salzberg,S., Hanson,M., van-Vugt,R., Palmer,N., Adams,M.D., Gocayne,J.D., Weidman,J., Utterback, T., Watthey,L., McDonald,L., Artiach,P., Bowman,C., Garland, S., Fujii,C., Cotton,M.D., Horst,K., Roberts,K., Hatch,B., Smith,H.O. and Venter,J.C. TITLE Direct Submission JOURNAL Submitted (12-DEC-1997) The Institute for Genomic Research, 9712 Medical Center Dr, Rockville, MD 20850, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: AE001147 ****(3468..6386) BASE COUNT 913 a 495 c 800 g 711 t 1840 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UCAAAGUAA- --UAAGAGUC UAUGGUGAAU 121 G|CCUAGG|A GCUUUA|AG| GC-GAAGAAG GU|CGUG(GU AA-GC-)U|- GCG-AAAAGC 181 UUGGGG|-GA GAA(G-CA-A ACA-)UUUAU UG-AUC-CCA AGAUU|ACCG AAUGGA(GUA 241 A)UCC|AGCU AGC-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---aagau)- GCUAGCU-AU CU-AUUAU-( 481 ----uuaa-- --)-AU-AAU -A-G--AGG- CGAUAC|CA- GGGGAAGU|G A(ACCA)UCU 541 AAGUA-CCCU GAGGAAAAGA AAUC(-AAA- --)GAGAU|U CC-CUUAGUA GU(GGCGA)G 601 CGA-AAA-GG GA-GUA-GCC CAAAcuuuaa -augugucaa --gcu(gcag -)---agc-g 661 uugcauuuau gggguuguag gacguuuag- --------gc uua(gucugu aa)uaagcaa 721 aaa------a guuacaaaau auuuauau-a gaaGAAu-aa u-c(u-ggaa a)g-uuuaac 781 |c(aaa)gaA GG(UGAUAGU )CCUGU-Aau u-uaaaugua aauaucuuuu ua-------- 841 ---------- ----aaaugu -uccu---GA GUAGGACGAG G(CACGAG-A AA)CCUUGUU 901 UGAAGCU-GG G-GA(GACCA C)UC-UCC-A AGGCUAA--- -AUACUAGAA AGCUACCGAU 961 AGAG-AA--G AGUACC(GUG A)-GGGA-AA GGUGAAAA-G AACCCC(GG- GA-)GGGGA- 1021 -GUGAAA-UA GAA-CUGAAA CCGU-AGACU UACAA-G-CA GUCAAAGCCG -uaa------ 1081 --------(- ---uuua--) ---------- ---uug-CGG UGAUGGCGUG CCU(UUU-GC 1141 AU|A)AUGA| -ACCUGCGAG UUAU-CAUG- UCUAGC-AAG AUUAAAGCA( UAGAAG)UGC 1201 U-GGAGUCGA AGC(GAAA-) GCGAGUCU(U AA-AA)GGGC GA-------- ---------- 1261 ---------- -----uu-ua G-UUAGAUGU GGUA-GACCC GAAGC-CGA- GUGA-UCUAU 1321 UUAUGGC|CA GGCUGAAGCU UGGG(UAAA) AC-CAAGUGG AGGGCCGAAC U-CUAGUCU( 1381 -GUUUAAAA) AGGCA|GGG- AUGAG-CUGU GAAUAGGAGU (-GAAAG)GC UAAACAAACU 1441 CGGAGAUAGC UGGUUCUCCC CGAAAUGGAU (-UUAA)GUU CAGC|-CUUA UUUu----A| 1501 -GUU|UAAUA G|AGGUAG|A GC-ACUAA-U UGAGCUA-GG |-GCCUG(uc aa-)AGGGUA 1561 CCAAACUCAG -UUAAACUCC GAA-UG-|CU A-U-U-A--- AAUG---AU| GAA-UAGGAG 1621 UGAGAC--UA U-GGGC(GAU AAG)GUUCAU -AGUC-GAGA GGG(-AAACA A-)CCCAGAC 1681 CAACAGCUAA G-GU|CUCA- AAA-A-UGUG -U-UAA-GUG ------GAAA AGGAGGUU-U 1741 AGGUACGUA- AACAGCCAGG AGGUUGGC(U UAGAAGCA)G CCAUACCU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CGA GU-ACU-UA- -AGC|GCCGA UAAU-GUAA- 1861 CGGGGCU-AA ACACA-U|U| ACCGAAGCU| UUGG|aucuu aac----(ga aa-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -guuaagau- GG-UAGGGGA G|-----CGU 2221 U-CUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCAG-A 2341 GAAGUUA-A- A-CU(-GGAA -)AGU--UUG AUGG|AGGUA U-CAGAAGUG AGAAUGC-AG 2401 GU|AUG-AGU A--ACGAAAA AAUGGG(UGA GAUU)CCCAU U|CGCC-GAA AACCUAAGGU 2461 UUCCUG-GGU AAAG-(GUCG U)CU|U-CCC AGGGUUAGU| CGG|C-CCCU AAGGCAAAGC 2521 U(GAAA)-A- GUGU-AGUCG AUGG-GAAAC GGG-(UU-AA UAUU)C-CCG U|AC|cu-c- 2581 uu-aua-guu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------ucga u------gga g--uga-cgc augagguuaa cuac-u-|gc u-agg(cg-- 2761 augguu-gu- --)cc-uagu -|uuaa---- ---------- ---gcau-ua aggcgaug-- 2821 --aucuu-aa uagg(aa-aa -u-)cc|g-- uuaagaga-- ---------- -gcu-aagau 2881 gug-auga|u ga-|------ ----gugcua u(-uuag--) guagcau--- ------gaaa 2941 --uguag-gu aguc-aag-| gugccaagaa auagcuuc-u aagguu---- ------aggc 3001 -uauaa--gg g|A|CCGUAC CGCAAACC(G ACACA)GG|U AG-GUGGGA- U-(GAAAA)U 3061 UCUAAGGCGC ||GCGAGAGA AUCCACGUU- ---------- ----AAGGAA CUCUGCAAAA 3121 UACGUACGUA AC(-UUCG)G GAUAAGUACG |ACCUAA--- ---------- ---------- 3181 -(-gcaa-)- ---------- ---------- --UUAGG-U| A(GCA)UAAA AAUGGUC-CA 3241 AA|CGACU-- ---GU(UUAC CAAAA)ACAC AGGUCUCUG| CAAAUCU(GU AA------)A 3301 GAGAAGU-AU AGGGACUGA- CACCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGAUGUUA 3361 GU-------- (U-UAU)--- --------GC GA-AGCAUUG AAUUUAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AUGGUGUAAC GA-UUUGGAC GCUGUCUCAA CGUGGAGCUC 3541 G|GUGAAAUU |GAAGUAU-C GG(UGAAGAU G)CCGAUUAC UUGUGGU-UA GACGGAAAGA 3601 CCCCGUGA|A CCU-UUACUA U|AGCUUGGU AUU|GAGAUU UGAUUAAAUA UGUGUAGGAU 3661 AGGUGGGAGA CUUUGAAG-- CUAUCUC(GU CA)GGGGUAG UGGAGUCAAU -C-UUGAAAU 3721 ACCACC|CUU G-UUUAAUUA GGU-UUCUAA -CUU-AUA-- -----(---G -AAA)----U 3781 AUGAG-GAGA GUGCCAGGUG GG-UAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AGAG 3841 UAAC)GGAGG U|G|C|GCAA AGGUUACC|U UAGAGUGG(U UGGAAA)UCA CUCUGU-AA| 3901 GU(G|UAAAG )GCAUAAGGU AGCUUAACUG UAAGAC(UGA CAA)GUCGAA CAGAUAC(GA 3961 AA)GU-AGGU |CUUAGUGAU CUGGCGGUGG CA(AGUGGA) AGC|GCCGUC ACUUAAC|GA 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UUA--UCCUU CCCAAGA(G- UUC-ACA)UC 4081 GACGGAA-GG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UA GGGCU(GGAG 4141 C---A)-GGU CCUAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-U GGU-CCCUAU -CU|GCCACA A-G|CG-UUG 4261 GAUAUUU|GA -|GAGGAGC- UAU------- -------CUU (UAGUAC(GA GA)GGACC)G 4321 AGAUGG|ACG AACCUCUAGU GUACCAGU|U AUCCU(GC-C A-)AGGGUAA GUGCUGGGUA 4381 GCU-ACGUUC GGAAAGGAUA ACCGCU(GAA AGCAUCUA)A GUGGGAAGCC UUCCUC|AAG 4441 AUGAGAUAUC C|UU|----- -(------)- -------UA- -AGG|-GU|C CUGG-(AAGA 4501 AU-A)CCAGG -UCGAUAG|G UUAG|AAGUG -UAAGUAUA- -(GCAA-)-- UAUAU|UA-A 4561 GCUG|A|CUA AUACUAAUU- ACCCGU-AU| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS L.santaros 4759 bp RNA RNA 11-JAN-191 DEFINITION Leptospira santarosai. ACCESSION No information KEYWORDS No information. SOURCE Leptospira santarosai. ORGANISM Leptospira santarosai. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: L14265 ID LSRGGC standard; DNA; PRO; 541 BP. XX AC L14265; XX DT 13-MAY-1993 (Rel. 35, Created) DT 13-MAY-1993 (Rel. 35, Last updated, Version 1) XX DE Leptospira santarosai ORF within intervening sequence of 23S DE ribosomal RNA gene. XX KW 23S ribosomal RNA; ribosomal RNA. XX OS Leptospira santarosai OC Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Spirochetes; OC Spirochaetales; Leptospiraceae. XX RN [1] RP 1-541 RA Ralph D., McClelland M.; RT "Intervening sequence with conserved open reading frame in RT eubacterial 23S rRNA genes"; RL Unpublished. XX FH Key Location/Qualifiers FH FT rRNA <1..5 FT /product="23S ribosomal RNA" FT /gene="23S rRNA" FT misc_feature 6..478 FT /note="intervening sequence (IVS) removed after FT transcription, but 23S rRNA is not religated" FT CDS 74..442 FT /note="ORF" FT /codon_start=1 FT rRNA 479..>541 FT /product="23S ribosomal RNA" FT /gene="23S rRNA" FT source 1..541 FT /organism="Leptospira santarosai" FT /strain="atlantae LT 81" FT /sequenced_mol="DNA" XX SQ Sequence 541 BP; 168 A; 80 C; 128 G; 165 T; 0 other; BASE COUNT 18 a 12 c 23 g 14 t 4692 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)-~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ 1201 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 1381 ~~~~~~~~~) ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|~~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~|~| GCCGA----| ----|----- --------[* ]--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ---------- -------AGA G|-----CGU 2221 U-CUU-UCU- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-CCGU-U 2341 GAAGGCG-U- A-CC(-GUAA -)G-A--GCG CUGG|AGGAG U-AAGAAGUG AAGA~~~-~~ 2401 ~~|~~~-~~~ ~--~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~-~~~ ~~~~-(~~~~ ~)~~|~-~~~ ~~~~~~~~~| ~~~|~-~~~~ ~~~~~~~~~~ 2521 ~(~~~~)-~~ ~~~~-~~~~~ ~~~~-~~~~~ ~~~-(~~-~~ ~~~~)~-~~~ ~~~~|~~-~- 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~---- ---------- -~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~-----~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 --~~~~~-~~ ~~~~-~~~~| ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~----~~~~ 3001 ~~~~~~-~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(-~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(-~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~-- --~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~---~~~)~ 3301 ~~~~~~~-~~ ~~~~~~~~~- ~~~~~~~~~~ ~~|~~~~-~~ ~-~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~-- (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |-~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~-~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ 3721 ~~~~~~|~~~ ~-~~~~~~~~ ~~~-~~~~~~ -~~~~~~~~~ ~~~~~(~~~~ -~~~)-~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~-~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~-~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~--~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~---~)-~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ -~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~- ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS L.borgpete 4759 bp RNA RNA 11-JAN-191 DEFINITION Leptospira borgpetersenii. ACCESSION No information KEYWORDS No information. SOURCE Leptospira borgpetersenii. ORGANISM Leptospira borgpetersenii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: L14263 ID LBRGGA standard; DNA; PRO; 1013 BP. XX AC L14263; XX DT 13-MAY-1993 (Rel. 35, Created) DT 13-MAY-1993 (Rel. 35, Last updated, Version 1) XX DE Leptospira borgpetersenii ORF within intervening sequence of 23S DE ribosomal RNA gene. XX KW 23S ribosomal RNA; ribosomal RNA. XX OS Leptospira borgpetersenii OC Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Spirochetes; OC Spirochaetales; Leptospiraceae. XX RN [1] RP 1-1013 RA Ralph D., McClelland M.; RT "Intervening sequence with conserved open reading frame in RT eubacterial 23S rRNA genes"; RL Unpublished. XX FH Key Location/Qualifiers FH FT rRNA <1..87 FT /product="23S ribosomal RNA" FT /gene="23S rRNA" FT misc_feature 88..776 FT /note="intervening sequence (IVS) removed after FT transcription, but 23S rRNA is not religated" FT CDS 179..544 FT /note="ORF" FT /codon_start=1 FT rRNA 777..>1013 FT /product="23S ribosomal RNA" FT /gene="23S rRNA" FT source 1..1013 FT /organism="Leptospira borgpetersenii" FT /strain="Hardjo bovis/Sponselee" FT /sequenced_mol="DNA" XX SQ Sequence 1013 BP; 317 A; 188 C; 264 G; 244 T; 0 other; BASE COUNT 81 a 72 c 105 g 66 t 4435 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ 1201 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 1381 ~~~~~~~~~) ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|~~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~GCA)G GAAU-UCU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CGA GU-GCU-CC- -CGC|GCCGA AAAU-GUAAU 1861 CGGGACU-AA GCAUG-G|C| GCCGAA---| ----|----- --------[* ]--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ---------- -----GGAGA G|-----CGU 2221 U-CUU-UCU- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-CCGU-U 2341 GAAGGCG-U- A-CC(-GUAA -)GGA--GCG CUGG|AGGAG U-AAGAAGUG AAGAUGC-UG 2401 GC|AUG-AGU A--GCGUAAA GGGGAG(UGA GAUU)CUUCC C|CACC-GAU AGCCUAAGGU 2461 UUCCCC-GGG AAGG-(CCAA U)CC|G-CCG GGGGUUAGU| CGG|C-CCCU AAGACGAGGC 2521 U(AAGA)-AU GCGU-AGUCG AUGG-GAAGC AGG-(UU-CA UA--)--guc g|AC|cu-g- 2581 ca-ggc-aug caagcuugca cug~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~---- ---------- -~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~-----~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 --~~~~~-~~ ~~~~-~~~~| ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~----~~~~ 3001 ~~~~~~-~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(-~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(-~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~-- --~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~---~~~)~ 3301 ~~~~~~~-~~ ~~~~~~~~~- ~~~~~~~~~~ ~~|~~~~-~~ ~-~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~-- (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |-~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~-~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ 3721 ~~~~~~|~~~ ~-~~~~~~~~ ~~~-~~~~~~ -~~~~~~~~~ ~~~~~(~~~~ -~~~)-~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~-~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~-~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~--~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~---~)-~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ -~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~- ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS L.interrog 4759 bp RNA RNA ~?~???? DEFINITION Leptospira interrogans serovar canicola strain Moulton. ACCESSION No information KEYWORDS No information. SOURCE Leptospira interrogans serovar canicola strain Moulton. ORGANISM Leptospira interrogans serovar canicola strain Moulton. REFERENCE 1 (bases 1 to 11172) AUTHORS No information JOURNAL April 1989 STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X14249 BASE COUNT 815 a 626 c 889 g 628 t 1801 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UCAAGUAAG- --AAAGGGCG UACGGGGGAU 121 G|CCCGGG|C AUCAGG|AC| GC-GAUGAAG GA|CGUG(GC UU-UC-)U|- GCG-AUAAGC 181 AACGGG|-GA GUU(G-UA-A GCA-)AGCAU UG-AUC-CGU UGAUU|UCCG AAUGGG(GCA 241 A)CCC|UCUU GGU-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---gaaua)- ACCGAGA-AC GC-------( 481 ---aaac--- --)------- -G-C--GAG- C-AAAG|UC- GGGGAAUU|G A(AACA)UCU 541 UAGUA-CCCG GAAUAAAAGA AAAU(-AAGA --)AUGAU|U CC-GUCAGUA GC(GGUGA)G 601 CGA-ACG-CG GA-AGA-GCC UAAAccccug ccuacguuac a-gau(cuaa -)---uuc-g 661 cuguagcagg gguguuguag gacuggca-- -------gga gua(gauuag aa)ugcucc- 721 -----acaaa guuaccaagc acaagauu-a gcaGAAc-gg uau(u-ggaa a)a-gccgac 781 |c(aua)gaG GG(UGAAAGU )CCUGU-Aag c-gaaaauuu ugugccuuug g--------- 841 ---------- -----ccagu auccu---GA GUACCACGGA A(CACGUG-U AA)UUCAGUG 901 GGAAUCU-GC G-GG(GACCA C)CC-CGU-A AGGCUAA--- -ACAGUACCU GAUGACCGAU 961 AGAG-AAC-A AGUACC(GCG A)-GGGA-AA GGUGAAAA-G UACCGG(GG- GA-)CCGGA- 1021 -GUGAAA-UA GUACCUGAAA CCGU-AUGCU UACAA-GGU- AUCAGAGCCU ---------- 1081 --------(- --uuuaau-) ---------- -------GGG UGAUGGUGUG CCU(UUU-GU 1141 AG|A)AUGA| -GCCGGCGAG UUAU-UUUA- CGUUGC-AAG CUUAAGGCA( GUGAGA)UGC 1201 C-GUAGGCGA AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC Gu-------- ---------- 1261 ---------- -----ua-aa G-UAGCGUGG AAUA-GACCC GAAGC-CUG- UCGA-GCUAU 1321 CCAUGUC|CA GGUUGAAGGU GGGG(UAAA) AC-UCACUGG AGGACCGAAC C-CUUUUUC( 1381 -GUUGAAAA) GAAUU|GGG- AUGAG-GUGU GGAUAGGGGU (-GAAAG)GC CUAUCAAGGC 1441 AGGCGAUAGC UGGUUCUCUC CGAAAUAGGU (-UUAG)GCC UAGC|-GUCA GUUGU---u| 1501 -uag|UUGCG G|GGGUAG|A GC-UCUGA-A AGGACUA-GG |-GGGCC(ca ca-)AGCUUA 1561 CCAAACCCUA -UCAAACUUC GAA-UA-|CC G-U-A-A--- cuc--caaA| GAC-UGGCAG 1621 UCAGAC--UA C-GGGG(GAU AAG)CUCCGU -GGUC-AAAA GGG(-AAACA G-)CCCAGAC 1681 CGUCGUUUAA G-GC|CCCA- AAG-UUCAUG -C-UAA-GUG ------GCAA AGGAUGUG-G 1741 GGGCGCAUA- UACAACCAGG AGGUUGGC(U UAGAAGCA)G CCAC-CCU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CGA GU-GCU-CC- -CGC|GCCGA AAAU-GUAAU 1861 CGGGACU-AA GCAUG-G|C| GCCGAAGGC| ACGG|auucc -------(gu aa-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ----ggagu- GG-UAGGAGA G|-----CGU 2221 U-CUU-UCU- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-CCGU-U 2341 GAAGGCG-U- A-CC(-GUAA -)GGA--GCG CUGG|AGGAG U-AAGAAAUG AAGAUGC-UG 2401 GC|AUG-AGU A--GCGUAAA GGGGAG(UGA GAUU)CUUCC C|CACC-GAU AGCCUAAGGG 2461 UUCCCC-GGG AAGG-(CCAA U)CC|G-CCG GGGGUUAGU| CGG|C-CCCU AAGACGAGGC 2521 U(AAGA)-AU GCGU-AGUCG AUGG-GAAGC AGG-(UU-CA UAUU)C-CUG C|AC|cg-a- 2581 gu-aaa-uug u--------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga u------gga g--uga-cgc aggaggaua- guua-g-|ug c-ggc(uu-- 2761 auuggu-u-- --)gc-cgu- -|ugcg---- ---------- ---agua-gu aggcauug-- 2821 --agagu-ga uugg(aa-aa -u-)cc|g-- ucacuuga-- ---------- -gcu-gagaa 2881 cuc-gcgg|g au-|------ -----ccuaa c(-gaau--) guuaggc--- ------guag 2941 --cuuuc-ga cucc-aag-| cugccaagaa auagcuuc-u aaguu----- ------uagg 3001 -uuuau--uc g|A|CCGUAC CGCAAACC(G ACACA)GG|U AG-GCAAGU- A-(GAGAA)U 3061 ACUAAGGUGU ||UCGAGAUA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAU 3121 UACUCCUGUA AC(-UUCG)G GAUAAGGGAG |ACCGGA--- -gaugcu--- -----uuagc 3181 c(-ugc--)g gcaaag---- ---aguauc- --GAAGG-U| G(GCA)CAAA AAUGGGG-GU 3241 AG|CGACU-- ---GU(UUAC CAAAA)ACAC AGGACUCUG| CCAAAUC(GG AA------)G 3301 AUGAAGU-AU AGGGUCUGA- CACCUGCCCG GU|GCUG-GA A-GGUCAAGA GGACGGGUUA 3361 GCa------- (G-CAA)--- -------uGC GAAAGCUCGG AAUUUAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUG )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGUGUAAC GA-CUUCCCC ACUGUCUCAA CGAGAGUCUC 3541 G|GCGAAAUU |GUAGUAC-C CG(UGAAGAU G)CGGGUUAC CUGCGAU-AG GACGGAAAGA 3601 CCCCGUGA|A CCU-UUACUG U|AACCUGGC AUU|GAACUU UGGUCCUGUA UGUGUAGGAU 3661 AGGUGGGAGG CUAUGAAA-- UCUGGAC(GC CA)GUCUGGA UGGAGCCGUC -G-UUGAAAU 3721 ACCACC|CUU A-CUUGACCC AAG-UUCUAA CCGA-AU--- -G---(-AAA -CAA)----C 3781 AUUCGAGACA AUGUCAGGCG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AGAG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGCGCGG(A CGGAAA)UCG CGCCAA-GA| 3901 GU(G|UAAAG )GCAUAAGGG AGCUUAACUG UGAGAC(AGA CAA)GUCGAG CAGGUAC(GA 3961 AA)GU-AGGG |CUUAGUGAU CCGGUGGUUC UG(UGUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UGA--UCGCG UCCAAGA(G- UCC-AUA)UC 4081 GACGACG-CG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GAAG 4141 C---A)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|AUCGCA G-G|CG-UUG 4261 GAGAUUU|GA -|CGGAAUC- UGU------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACG AACCUCUGGU GUAUCAGU|U GUUUC(GC-C A-)GAAGCA- ACGCUGAGUA 4381 GCU-AUGUUC GGCAGGGAUA ACCGCU(GAA AGCAUAUA)A GUGGGAAACC CUUCUG|AAG 4441 AUAAGAUCUC C|CU|GGGA- -(-GCAA-)- -UCCC-CUA- AAGA|-CC|C CAAG-(AAGA 4501 UG-A)CUUGG -UUGAUAG|G UCAC|AGAUG -CAAGUGUG- -(GUAA-)-- CACAU|UC-A 4561 GUCG|A|GUG AUACUAAUC- GGUCGUGAG| GCUUGA-CCA U-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS PURPLE.ALP 4759 bp RNA RNA 17-JAN-1993 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 4759 others ORIGIN 1 -x~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~-)~|- ~~~~~~~~~~ 181 ~~~~~~|-~~ ~~~(~-~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~--- ---------- ---------- 301 -----~~~~~ ~~~~~~~~~~ ~~~~~~---- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- -----~-~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~|~ ~~-~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---- 721 ---~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~-~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~-- -~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ -~~~-~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| -~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 -~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 -~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~-~ ~~~~~~~~~~ |-~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~-~~~~| ~~~~~~~~~~ 1621 ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~-~~~~~ ~-~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~-~~~ ~----~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~-~- -~~-|~~~~~ ~~~~-~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~|-----~~~ 2221 ~-~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~- ~-~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 2401 ~~|~~~~-~~ ~-~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~-~~ ~~~~~~-~~~ ~~~~|~~~~- 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~------~~~ ~~--~~-~~~ ~~~~~~~~~- ~~~~-~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ---------- --~~~~~~~~ ~~~~~~~~-- 2821 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~----~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 --~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~-~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~- ---~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~---~~~~~ 3301 ~~~~~~~~-~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~-~~ ~-~~-~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~( ~~~)~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ 3721 ~~~~~~|~~~ ~~~-~~~~~~ ~~~~~-~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~-~~-~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~|~|~|~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~---~ ~~~~~~-~~~ 3901 ~|~~(~|~~~ ~~)~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~-~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~~~|~~~~ ~~~~~~~~~| 4021 ~~~~~~~~~~ ~~~~~|~~~~ |~~~~~~-~| ~~~~~--~~~ ~~~~~~~~~( ~~~~~~~~~) 4081 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~|~~~~|~~~ ~~~~~~~~~| ~~~~~(~~~~ 4141 ~~~~~--)-~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ -~~~~~~|~~ ~~~~~~~|~~ 4261 ~~~~~~~~~~ -|~-|~~~~~ -~~~~~~--- ---------- -~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4381 ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 |~~~~~~~~~ ~~~~~|~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~|~~~~~-~ 4501 ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~||||| // LOCUS R.rubrum 4759 bp RNA RNA 03-JUL-1997 DEFINITION Rhodospirillum rubrum.; 23S ribosomal RNA; 23S rRNA gene. ACCESSION X87290 KEYWORDS 23S ribosomal RNA; 23S rRNA gene. SOURCE Rhodospirillum rubrum. ORGANISM Rhodospirillum rubrum. REFERENCE 1 (bases 1 to 2759) AUTHORS ., Reetz,K., Beimfohr,C., Brockmann,E., Kirchhof,G., Dorn,S., Bachleitner,M., Klugbauer,N., Springer,N., Lane,D., Nietupsky ,R., Weizenegger,M. and Schleifer,K.H. Ludwig,W., Rossello-Mora,R., Aznar,R., Klugbauer,S., Spring,S TITLE proteobacteria Comparative sequence analysis of 23S rRNA from JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2759) AUTHORS Ludwig,W. TITLE Direct Submission JOURNAL Submitted (18-MAY-1995) W. Ludwig, Lehrstuhl fuer Mikrobiologie, Technische Universitaet Muenchen, Muenchen, FRG STANDARD No information REFERENCE 3 (bases 1 to 2759) AUTHORS Ludwig,W., Rossello-Mora,R., Aznar,R., Klugbauer,S., Spring,S., Reetz,K., Beimfohr,C., Brockmann,E., Kirchhof,G. , Dorn,S., Bachleitner,M., Klugbauer,N., Springer,N., Lane, D., Nietupsky,R., Weizenegger,M. and Schleifer,K.H. TITLE Comparative sequence analysis of 23S rRNA from proteobacteria JOURNAL Syst. Appl. Microbiol. 18, 164-188 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X87290 BASE COUNT 694 a 666 c 875 g 524 t 2000 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- -cgugguuuc UCAAGCAAG- A-GAAGGGCA UCUGGUGGAU 121 G|CCUUGG|C GUCAAG|AG| GC-GAUGAAG GA|CGUG(GC AC-UC-)U|- GCG-AAAAGC 181 CAUGGG|-GA GCU(G-AG-A GCA-)AGCUU UG-AUC-CAU GGAUA|UCCG AAUGGG(GAA 241 A)CCC|ACCC C---(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----uuau)- --GGGGU-AU CCGUAG-CU( 481 GA-AUCCA-- UA)GGG-CUA CG-G--AAG- C-GAAC|CC- GGCGAACU|G A(AACA)UCU 541 AAGUA-GCCG GAGGAAAGGA AAUC(-AACC --)GAGAC|U CC-GUUAGUA GU(GGCGA)G 601 CGA-ACG-CG GA-UCA-GCC c--------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- -agugguauu uaugucuaaa ccgGAAc-cg u-c(u-ggaa a)g-ucgggc 781 |c(aua)gcG GG(UGACAGC )CCCGU-Acg g-guagaugg cauuuauauc ---------- 841 ---------- ---------- -----cucGA GUAGGGCGGG A(CACGUG-A AA)UCCUGUC 901 UGAACGU-GG G-GG(GACCA C)CC-UCC-A AGGCUAA--- -GUACUCCUU GACGACCGAU 961 AGUG-CAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GAU GA-)GGGGA- 1021 -GUGAAA-CA GAUCCUGAAA CCGG-AUGCC UACAA-G-CA GUCGGAGCCU --C------- 1081 --------(- ---uucg--) ---------- -----G-AGG UGACGGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAA-UCUG- GCGAGC-AAG CUUAAGCC-( -G-AUA)-GG 1201 U-GUAGGCGC AGC(GAAA-) GCGAGUCU(U AA-UA)GGGC GU-------- ---------- 1261 ---------- ------c-ga G-UUCGUCGG AUUA-GACCC GAAAC-CGG- GUGA-UCUAG 1321 CCAUGGG|CA GGUUGAAGGU GGAG(UAAC) AC-CCACUGG AGGACCGAAC C-CACGUCU( 1381 -GUUGAAAA) AGACG|GGG- AUGAC-CUGU GGCUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 CGGAAAUAGC UGGUUCUCCG CGAAAGCUAU (-UUAG)GUA GCGC|-GUCG GAUGA---U| 1501 -UAC|CACCG G|GGGUAG|A GC-ACUGG-A UGGGCUA-GG |-GGGCC(gc ga-)GGCCUA 1561 CCAAACCUAA -CCAAACUCC GAA-UA-|CC G-G-U-G--A GUAC----A| GUC-CGGCAG 1621 ACAGAC--UC A-GGGU(GCU AAC)GUCCUG -GGUC-AAGA GGG(-AAACA A-)CCCAGAC 1681 CACCAGCUAA G-GU|CCCC- AAGUC-ACGG -C-UAA-GUG ------GGAA AGGAUGUG-G 1741 GACGGCCAU- AACAACCAGG AGGUUGGC(U UAGAAGCA)G CCAU-CCU|U (UAA)A|GAA 1801 AGC(GUAACA )GC|UCACUG GUcua--aua GC-UAU-CC- -UGC|GCCGA AGAU-GUAC- 1861 CGGGGCUCAA GCCGU-G|C| ACCGAAGCU| GUGG|auucu uuc----(uu cg-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -gaaagagu- GG-UAGCGGA G|-----CGU 2221 U-CCG-UAG- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCUG-U 2341 GAAGGUG-U- C-UC(-GUAA -)GGG--AUG CUGG|AGGUA U-CGGAAGCG AGAAUGC-UG 2401 AC|AUG-AGU A--GCGACAA GGAGUG(UGA GAAA)CACUC C|CGCC-GAA AGCCCAAGGG 2461 UUCCUG-CGC AAGG-(CUAA U)CC|G-CGC AGGGUGAGU| CGG|C-CCCU AAGUCGAGGG 2521 C(GAAA)-G- CCGU-AGACG AUGG-GAAUC AGG-(UU-AA UAUU)C-CUG A|AC|uc-g- 2581 ug-aga---- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------u g--uga-cgc cu--uucgga cguu-g-|uu c-cuc(cuua 2761 ucggau-ug- --)ga-gggg -|-------- ---------- ---------- ---------- 2821 ---------- ----(----- ---)--|--- ---------- ---------- ---------- 2881 --------|- ---|------ ---------- -(-------) ---------- ---------- 2941 ---cagg-ca ggaa-----| aggccgggaa a-ua------ ---------- -------a-c 3001 cucacguaug a|a|CCGUAC CCCAAACC(G ACACA)GG|u GG-GCUGGU- A-(GAGUA)U 3061 ACCAAGGCGC ||UUGAGAGA AUGGUGUUG- ---------- ----AAGGAA CUAGGCAAAU 3121 UGCCCCCGUA AC(-UUCG)G GAGAAGGGGG |cccu----- -cgu------ ------ggug 3181 g(-gcaa-)c cauc------ ------aug- ----ggg-g| G(GCA)CAGA CCAGGGG-GU 3241 GG|CGACU-- ---GU(UUAC UAAAA)ACAC AGGGCUCUG| CGAAGUC(GC AA------)G 3301 ACGACGU-AU AGGGUCUGA- CGCCUGCCCG GU|GCCG-GA A-GGUUAAGA GGAGAG---- 3361 GU-------- (G-CAA)--- --------GC ------UUUG AAUCGAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-CUUCCCC GCUGUCUCCA ACACCAACUC 3541 A|GCGAAAUU |GAAUUCU-C CG(UGAAGAU G)CGGAGUUC CCACGGC-CA GACGGAAAGA 3601 CCCCAUGA|A CCU-UUACUA C|AACUUCGC AGU|GGCAUU AGGCGAUGGA UGUGUAGGAU 3661 AGGCGGGAGG CUUUGAAG-- CAUAGGC(GC CA)GCUUGUG UGGAGCCACC -C-UUGAAAU 3721 ACCGCC|CUU C-CGUCUCCU GAU-GUCUAA -CCGCGG--- -CCCG(--UG -AUC)-CGGG 3781 UCCGG-GACC CUGCGUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|GCCUC C(CAA-AGAG 3841 UAAC)GGAGG C|G|C|GCGA UGGUGGGC|U CAGGCCGG(U CGGAAA)UCG GCUGAU-GA| 3901 GU(G|CAAUG )GCAAAAGCC CGCCUGACUG CGAGAG(CGA CAG)UUCGAG CAGAGUC(GA 3961 AA)GA-CGGU |CAUAGUGAU CCGGUGGUCC CG(CGUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|UGGG|G AUAACAG|GC UGA--UACUG CCCAAGA(G- UCC-ACA)UC 4081 GACGGCA-GU GU-UuGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GGAG 4141 C---A)-GGU CCCAAGGGU| UCGGC(UGUU C)GC-CGAUU AAAGUGGUAC G-UGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|ACCGUG G-G|UG-UAG 4261 GAUACUU|GA -|GAGGAGC- UGU------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACA UACCUCUGGU GUACCAGU|U GUCAC(GC-C A-)GUGGCA- CCGCUGGGUA 4381 GCU-AAGUAU GGACGGGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAGCC UCCCUC|AAA 4441 ACCAGGUAUC C|CU|----- -(------)- -------aU- CAGG|-AC|C GUGG-(AAGA 4501 CC-A)CCACG -UUGAUAG|G CCGG|GUGUG -GAAGCGCA- -(GUAA-)-- UGCGU|GA-A 4561 GCUA|A|CCG GUACUAAUC- GUCCGAUCG| GCUUGA-UUG A-------|c cacgcgca-- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS A.xylinus 4759 bp RNA RNA 11-JAN-191 DEFINITION Acetobacter xylinus subsp. was Acetobacter xylinum. ACCESSION No information KEYWORDS No information. SOURCE Acetobacter xylinus subsp. was Acetobacter xylinum. ORGANISM Acetobacter xylinus. REFERENCE 1 (bases 1 to 2759) AUTHORS Boesch,C. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X89812 LOCUS AX23SRRNA 2748 bp DNA BCT 06-SEP-1995 DEFINITION A.xylinum DNA for 23S ribosomal RNA gene. ACCESSION X89812 KEYWORDS 23S ribosomal RNA; 23S rRNA gene. SOURCE Acetobacter xylinum. ORGANISM Acetobacter xylinum Eubacteria; Proteobacteria; alpha subdivision; Acetobacteraceae; Acetobacter. REFERENCE 1 (bases 1 to 2748) AUTHORS Boesch,C. JOURNAL Unpublished REFERENCE 2 (bases 1 to 2748) AUTHORS Boesch,C. TITLE Direct Submission JOURNAL Submitted (19-JUL-1995) to the EMBL/GenBank/DDBJ databases. C. Boesch, Laboratory of Food Microbiology, ETH-Zuerich, Schmelzbergstrasse 9, CH-8092 Zuerich, SWITZERLAND COMMENT NCBI gi: 976076 FEATURES Location/Qualifiers source 1..2748 /organism="Acetobacter xylinum" /strain="NCIB" /isolate="11664" rRNA 1..2748 /gene="23S rRNA" /product="23S ribosomal RNA" BASE COUNT 718 a 617 c 852 g 560 t 1 others ORIGIN BASE COUNT 718 a 617 c 852 g 560 t 2012 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- ---------A AUGAGCGCG- A-UAAGGGCA UUCGGUGGAU 121 G|CCUUGG|C ACCAGG|AG| GC-GAUGAAA GA|CGUG(GC AC-GC-)U|- GCG-AAAAGU 181 CAUGGG|-GA GCC(G-CG-A GCA-)GGCUU UG-AUC-CGU GGAUA|UCUG AAUGGG(GGA 241 A)CCC|ACCC A---(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----gcga)- --UGGGU-AU CA-UGUUCU( 481 GA-AUACA-- UA)GGG-ACA -U-G--AGG- C-GAAC|CC- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCG GAGGAAAAGA CAUC(-AAUU --)GAGAU|U CU-GCUAGUA GU(GGCGA)G 601 CGA-ACG-CG GA-ACA-GGC C--------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- -aguggcugu uuuugaagaa gcaGAAc-gg a-a(u-ggaa a)g-uccggc 781 |c(aua)gcG GG(UGAUAGC )CCCGU-Aug c-guaauauc aggaacaguc ---------- 841 ---------- ---------- -----cuuGA GUAGGGCGGG A(CACGUG-G AA)UCCUGUC 901 UGAACAU-GG G-AG(GACCA C)CC-UCC-A AGCCUAA--- -AUACUCCCU GGUGACCGAU 961 AGUG-AAC-A AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GAC GA-)GGGGA- 1021 -GUGAAA-UA G-ACCUGAAA CCGA-AUGCC UACAA-G-CA GUCGGAGCCU --C------- 1081 --------(- ---uuau--) ---------- -----G-GGG UGACGGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAG UUUC-UGUU- UGCAGC-AAG CUUAAGCC-( -G-UUA)-GG 1201 U-GUAGGCGC AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC GA-------- ---------- 1261 ---------- ------c-ga G-UUGCUGGC AGAA-GACAC GAAAC-CGA- GUGA-UCUAG 1321 CCAUGGC|CA GGCUGAAGGU GCGG(UAAC) AC-GCACUGG AGGGCCGAAC C-CACGCCU( 1381 -GUUGAAAA) AGUCG|GGG- AUGAG-CUGU GGCUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 CGGAAAUAGC UGGUUCUCCC CGAAAGCUAU (-UUAG)GUA GCGC|-CUCG GACGA---A| 1501 -UAC|CAUAG G|GGGUAG|A GC-ACUGU-U UCGGCUA-GG |-GGGUC(au ccc)GACUUA 1561 CCAAACCGAU -GCAAACUCC GAA-UA-|CC U-A-U-G--A GUAC----U| AUC-CGGGAG 1621 ACAGAC--UG C-GGGU(GCU AAC)GUCCGU -AGUC-AAGA GGA(-AAACA A-)UCCAGAC 1681 CGCCAGCUAA G-GC|CCCC- AAAUU-AUAG -U-UAA-GUG ------GGAA ACGAUGUG-G 1741 GAAGGCAUA- GACAGCUAGG AGGUUGGC(U UAGAAGCA)G CCAC-CCU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUA GU-----CGA GU-CGG-CCU CUGC|GCGGA AGAU-GUAA- 1861 CGGGGCUAAA ACUAU-A|U| GCCGAAGCU| GCGG|auuug caa----(uu ua-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -uugcaagu- GG-UAGGGGA G|-----CGU 2221 U-CUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCGA-U 2341 GAAGGUG-U- A-UU(-GAGA -)AGU--AUG CUGG|AGGUA U-CAGAAGUG CGAAUGC-UG 2401 AC|GUG-AGU A--ACGACAA UGCGAG(UGA AAAA)CUCGC A|CGCU-GAA AGACCAAGGG 2461 UUCCAG-UCC AACG-(UUAA U)CG|G-GGC UGGGUGAGU| CGA|C-CCCU AAGGCGAGGC 2521 C(GAGA)-G- CGGU-AGUCG AUGG-GAAAU UGG-(UU-AA UAUU)C-CAA U|AC|uu-c- 2581 ua-ugu-aau ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga u------gag a--gga-cgg agaagguua- aguc-a-|gc c-ugg(cg-- 2761 uugg-u-ugu --)cc-aggu -|gga----- ---------- -agguuguag gcau------ 2821 ---guau-cu uagg(cacaa -u-)cc|g-- ggguacugu- ---------- -aug-cugag 2881 aacugaua|g ---|------ --caagcugu a(-cuug--) uacagu---- ------gaag 2941 --uggcugau accaug---| cuuccaggaa a-agucuc-u aagcuuca-- -------g-u 3001 uacaua--gg a|a|UCGUAC CCGAAACC(G ACACA)GG|U GG-UCAGGU- C-(GAGUA)G 3061 ACCAAAGCGC ||UUGAGAGA ACUCUGCUG- ---------- ----AAGGAA CUAGGCAAAA 3121 UGGUACCGUA AC(-UUCG)G GAGAAGGUAC |gcugccgac -ggu------ ----gauggg 3181 a(-uuuac)u cccuga---- -----gcgg- uuggcag-c| c(ACA)GAAA CCAGGCC-CC 3241 UG|CAACU-- ---GU(UUAU UAAAA)ACAU AGCACUCUG| CAAACAC(GA AA------)G 3301 UGGACGU-AU AGGGUGUGA- UGCCUGCCCG GU|GCUG-GA A-GGUUAAUU GAUGGG---- 3361 GU----uagc (g-uaa)gcg aa------GC ------UCUU GAUCGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|CUCGGG(U 3481 AA-U)UCCGA C|CUGCACGA AUGGCGUAAC GA-CUUCCCC UCUGUCUCCA GCAUCGGCUC 3541 A|GCGAAAUU |GAAUUCC-C CG(UGAAGAU C)GGGGGUAC CCGCGGU-CA GACGGAAAGA 3601 CCCUAUGA|A CCU-UUACUG C|AGCUUUGC AGU|GGCAUC AGAGACAUUC UGUGUAGGAU 3661 AGGUGGGAGG CUUUGAAA-- CCGGGGC(GC CA)GUUCCGG UGGAGCCAUC -C-UUGAAAU 3721 ACCACC|CUG A-CUGUUUCU GAU-GUCUAA -CCGAGG--- -CCUG(--UU -AGC)-CAGG 3781 UCCGG-GACC CUGCAUGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(CAA-AGUG 3841 UAAC)GGAGG C|N|C|GCGA UGGUGGGC|U CAGGCCGG(U CGGAAA)CCG -CUGUC-GA| 3901 GU(G|CAAUG )GCAUAAGCC CGCCUGACUG UGAGAG(UGA CAG)CUCGAU CAGAGAC(GA 3961 AA)GU-CGGC |CAUAGUGAU CCGGUGGUCC CG(CGUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|UAGG|G AUAACAG|GC UGA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|CG GGGCU(GGAG 4141 C---A)-GGU CCCAAGGGU| UCGGC(UGUU C)GC-CGAUU AAAGUGGUAC G-UGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|UG-UUG 4261 GAGACUU|GA -|GAGGAUU- UGU------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGAUGA|ACA UACCUCUGGU GCACCGGU|U GUCGC(GC-C A-)CUGGCA- CAGCCGGGUA 4381 GCU-AAGUGU GGACGGGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAAnn nnnnnn|nnn 4441 nnnnnnnnnn n|nn|nnnnn n(-nnn--)n nnnnn-nnn- nnnn|-nn|n nnnn-(nnnn 4501 nn-n)nnnnn -nnnnnnn|n nnnn|nnnnn -nnnnnnnn- -(nnnn-)-- nnnnn|nn-n 4561 nnnn|n|nnn nnnnnnnnn- nnnnnnnnn| nnnnnn-nnn n-------|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS A.intermed 4759 bp RNA RNA 02-OCT-1997 DEFINITION Acetobacter intermedius.; 23S ribosomal RNA; 23S rRNA gene. ACCESSION Y14680 KEYWORDS 23S ribosomal RNA; 23S rRNA gene. SOURCE Acetobacter intermedius. ORGANISM Acetobacter intermedius. REFERENCE 1 (bases 1 to 2620) AUTHORS Boesch,C., Treck,J., Teuber,M. and Sievers,M. TITLE dependent Acetobacter intermedius. spec. nov., is acetic acid tolerant, in contrast to Acetobacter europaeus not acidic acid JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2620) AUTHORS Boesch,C. TITLE Direct Submission JOURNAL Submitted (29-AUG-1997) C. Boesch, Laboratory of Food Microbiology, ETH-Zuerich, Schmelzbergstrasse 9, CH-8092 Zuerich, SWITZERLAND STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: Y14680 Related sequence Y14694. BASE COUNT 670 a 610 c 835 g 497 t 2147 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- ---------A AUGAGCGCG- A-UAAGGGCA UUCGGUGGAU 121 G|CCUUGG|C ACCAGG|AG| GC-GAUGAAA GA|CGUG(GC AC-GC-)U|- GCG-AAAAGC 181 CAUGGG|-GA GCC(G-CG-A GCA-)GGCUU UG-AUC-CGU GGGUA|UCUG AAUGGG(GCA 241 A)CCC|ACCC A---(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----gcga)- --UGGGU-AU CA-UGUUCU( 481 GA-AUACA-- UA)GGG-ACA -U-G--AGG- C-GAAC|CC- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCG GAGGAAAAGA CAUC(-AAUU --)GAGAU|U CU-GCUAGUA GU(GGCGA)G 601 CGA-ACG-CG GA-ACA-GGC C--------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- -agugguugu uucugaagaa gcaGAAc-gg a-a(u-ggaa a)g-uccggc 781 |c(aga)gcG GG(UGAUAGC )CCCGU-Aug c-guaguguc aggaaugauc ---------- 841 ---------- ---------- -----cuuGA GUAGGGCGGG A(CACGUG-A AA)UCCUGUC 901 UGAACAU-GG G-GG(GACCA C)CC-UCC-A AGCCUAA--- -AUACUCCCU GGUGACCGAU 961 AGUG-AAC-A AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GAC GA-)GGGGA- 1021 -GUGAAA-GA G-ACCUGAAA CCGA-AUGCC UACAA-G-CA GUCGGAGCCU --C------- 1081 --------(- ---uuau--) ---------- -----G-GGG UGACGGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAG UUUC-UGUU- UGCAGC-AAG CUUAAGCC-( -G-UUA)-GG 1201 U-GUAGGCGC AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC GA-------- ---------- 1261 ---------- ------c-ga G-UUGCUGGC AGAA-GACCC GAAAC-CGA- GUGA-UCUAG 1321 CCAUGGC|CA GGCUGAAGGU GCGG(UAAC) AC-GCACUGG AGGGCCGAAC C-CACGCCU( 1381 -GUUGAAAA) AGUCG|GGG- AUGAG-CUGU GGCUAGGGGU (-GAAAG)GC CAAUCAWASK 1441 MKSMAAUAGC UGGUUCUCCS CGAAAUCUAU (-UGAG)GUA GACC|-GUCG AGUA----U| 1501 -UAC|CCCGG G|GAGUAG|A GC-ACUGG-A UGGGCUA-GG |-GGGGC(cc aaa)GCCUUA 1561 CCAAACCUAA -CCAAACUCC GAA-UA-|CU C-G-G-A--A GUAU---gA| GCU-CGGCAG 1621 ACAGAC--AG U-GGGU(GCU AAG)GUCCAU -UGUC-GAGA GGG(-AAACA G-)CCCAGAC 1681 CACCAGCUAA G-GC|CCCU- AAAUC-GUGG -C-UAA-GUG ------GGAA AGGAUGUG-G 1741 GGAUUCCAA- AACAACCAGG AGGUUGGC(U UAGAAGCA)G CCAU-CCU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG GUcua--aua GA-AAC-CC- -UGC|GCCGA AAAU-GUAA- 1861 CGGGGCUCAA GCCAC-G|U| GCCGAAGCU| GUGG|gugca uuc----(uu u--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -gaaugcgc- GG-UAGCGGA G|-----CGU 2221 U-CCG-UAG- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-UCUG-U 2341 GAAGGAG-Ac G-GG(-GUGA -)CCC--UCU CUGG|AGAUA U-CGGAAGUG CGAAUGC-UG 2401 AC|AUG-AGU A--GCGACAA ACAGUG(CGA GAAA)CACUG U|CGCC-GAA AGUCCAAGGG 2461 UUCCUG-CGC AAGG-(UUAA U)CC|G-CGC AGGGUGAGC| CGG|C-CCCU AAGGCGAGGG 2521 C(GAAA)-G- CCGU-AGUCG AUGG-AAACC GGG-(CA-AA UAUU)C-CCG G|GC|cu-g- 2581 cc-aga---- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------a g--uga-cga au-acaaua- uguu-g-|uc g-ggu(cuua 2761 ucggau-ug- --)au-ccgg -|-------- ---------- ---------- ---------- 2821 ---------- ----(----- ---)--|--- ---------- ---------- ---------- 2881 --------|- ---|------ ---------- -(-------) ---------- ---------- 2941 ---cuuu-ug gagu-----| auuccaggaa a-uagc---- ---------- ---------u 3001 cuggcauaua g|a|CCGUAC CCGAAACC(G ACACA)GG|U GG-ACUGGU- A-(GAGAA)U 3061 ACCAAGGCGC ||UUGAGAGA ACGAUGCUG- ---------- ----AAGGAA CUAGGCAAAU 3121 UACUUGCGUA AC(-UUCG)G GAUAAGCAAG |accc----- -guc------ ------agug 3181 g(-gcaa-)c cauc------ ------ggc- ----ggg-U| G(GCA)CAGA CCAGGGG-GU 3241 AG|CGACU-- ---GU(UUAG UAAAA)ACAC AGGGCUGUG| CGAAGUC(GA GA------)G 3301 ACGACGU-AU ACGGCCUGA- CGCCUGCCCG GU|GCCG-GA A-GGUUAAGA GGAGGU---- 3361 GU-------- (G-CAA)--- --------GC ------ACCG AAUUGAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-CUUCCCC GCUGUCUCCA GCAUCGGCUC 3541 A|GCGAAAUU |GAAUUCC-C CG(UGAAGAU G)CGGGGUAC CCGCGGU-CA GACGGAAAGA 3601 CCCUAUGA|A CCU-UUACUG C|AGCUUUGC AGU|GGCAUC AGAGACAUUC UGUGUAGGAU 3661 AGGUGGGAGG CUUUGAAA-- CCGGGGC(GC CA)GUUCCGG UGGAGCCAUC -C-UUGAAAU 3721 ACCACC|CUG A-CUGUUUCU GAU-GUCUAA -CCGAGG--- -CCUG(--UU -AGC)-CAGG 3781 UCCGG-GACC CUGCAUGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(CAA-AGUG 3841 UAAC)GGAGG C|G|C|GCGA UGGUGGGC|U CAGGCCGG(U CGGAAA)CCG GCUGUC-GA| 3901 GU(G|CAAUG )GCAUAAGCC CGCCUGACUG UGAGAG(UGA CAG)CUCGAU CAGAGAC(GA 3961 AA)GU-CGGC |CAUAGUGAU CCGGUGGUCC CG(CGUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|UAGG|G AUAACAG|GC UGA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GGAG 4141 C---A)-GGU CCCAAGGGU| UCGGC(UGUU C)GC-CGAUU AAAGUGGUAC G-UGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|UG-UUG 4261 GAGACUU|GA -|GAGGAUU- UGU------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGAUGA|ACA UACCUCUGGU GCACCGGU|U GUCGC(GC-C A-)GCGGCA- CAGCCGGGUA 4381 GCU-AAGUGU GGACGGGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAA~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS A.europa.1 4759 bp RNA RNA 11-JAN-191 DEFINITION Acetobacter europaeus. ACCESSION No information KEYWORDS No information. SOURCE Acetobacter europaeus. ORGANISM Acetobacter europaeus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X89771 ID AE23SRRNA standard; DNA; PRO; 2744 BP. XX AC X89771; XX DT 25-JUL-1995 (Rel. 44, Created) DT 25-JUL-1995 (Rel. 44, Last updated, Version 1) XX DE A.europaeus DNA for 23S ribosomal RNA gene XX KW 23S rRNA; ribosomal RNA. XX OS Acetobacter europaeus OC Prokaryota; Bacteria; Gracilicutes; Scotobacteria; OC Aerobic rods and cocci; Azotobacteraceae. XX RN [1] RA Boesch C.; RT ; RL Unpublished. XX RN [2] RP 1-2744 RA Boesch C.; RT ; RL Submitted (18-JUL-1995) to the EMBL/GenBank/DDBJ databases. RL C. Boesch, Laboratory of Food Microbiology, ETH-Z=FCrich, RL Schmelzbergstrasse 9, CH-8092 Z=FCrich, SWITZERLAND XX FH Key Location/Qualifiers FH FT source 1..2744 FT /organism=3D"Acetobacter europaeus" FT /strain=3D"DSM 6160" FT /isolate=3D"DES 11" FT rRNA 1..2744 FT /product=3D"23S ribosomal RNA" XX SQ Sequence 2744 BP; 715 A; 618 C; 852 G; 558 T; 1 other; BASE COUNT 715 a 618 c 852 g 558 t 2016 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- ---------A AUGAGCGCG- A-UAAGGGCA UUCGGUGGAU 121 G|CCUUGG|C ACCAGG|AG| GC-GAUGAAA GA|CGUG(GC AC-GC-)U|- GCG-AAAAGC 181 CAUGGG|-GA GCC(G-CG-A GCA-)GGCUU UG-AUC-CGU GGGUA|UCUG AAUGGG(GCA 241 A)CCC|ACCC A---(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----gcga)- --UGGGU-AU CA-UGUUCU( 481 GA-AUACA-- UA)GGG-ACA -U-G--AGG- C-GAAC|CC- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCG GAGGAAAAGA CAUC(-AAUU --)GAGAU|U CU-GCUAGUA GU(GGCGA)G 601 CGA-ACG-CG GA-ACA-GGC C--------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- -aguguucau uuuugaagaa gcaGAAc-gg a-a(u-ggaa a)g-uccggc 781 |c(aua)gcG GG(UGAUAGC )CCCGU-Aug c-guaguguc aggaaugauc ---------- 841 ---------- ---------- -----cuuGA GUAGGGCGGG A(CACGUG-A AA)UCCUGUC 901 UGAACAU-GG G-GG(GACCA C)CC-UCC-A AGCCUAA--- -AUACUCCCU GGUGACCGAU 961 AGUG-AAC-A AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GAC GA-)GGGGA- 1021 -GUGAAA-UA G-ACCUGAAA CCGA-AUGCC UACAA-G-CA GUCGGAGCCU --C------- 1081 --------(- ---uuau--) ---------- -----G-GGG UGACGGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAG UUUC-UGUU- UGCAGC-AAG CUUAAGCC-( -G-UUA)-GG 1201 U-GUAGGCGC AGC(GAAA-) GCGAGUCU(G AA-CA)GGGC GA-------- ---------- 1261 ---------- ------c-ga G-UUGCUGGC AGAA-GACAC GAAAC-CGA- GUGA-UCUAG 1321 CCAUGGC|CA GGCUGAAGGU GCGG(UAAC) AC-GCACUGG AGGGCCGAAC C-CACGCCU( 1381 -GUUGAAAA) AGUCG|GGG- AUGAG-CUGU GGCUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 CGGAAAUAGC UGGUUCUCCC CGAAAGCUAU (-UUAG)GUA GCGC|-CUCG GACGA---A| 1501 -UAC|CAUAG G|GGGUAG|A GC-ACUGU-U UCGGCUA-GG |-GGGUC(au ccc)GACUUA 1561 CCAAACCGAU -GCAAACUCC GAA-UA-|CC U-A-U-G--A GUAC----U| AUC-CGGGAG 1621 ACAGAC--UG C-GGGU(GCU AAC)GUCCGU -AGUC-AUGA GGA(-AAACA A-)UCCAGAC 1681 CGCCAGCUAA G-GC|CCCC- AAAUU-AUAG -U-UAA-GUG ------GGAA ACGAUGUG-G 1741 GAAGGCAUA- GACAGCUAGG AGGUUGGC(U UAGAAGCA)G CCAC-CCU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUA GU-----CGA GU-CGG-CC- -UGC|GCGGA AGAU-GUAA- 1861 CGGGGCUAAA ACUAU-A|U| GCCGAAGCU| GCGG|augug cac----(aa u--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -gugcacgu- GG-UAGGGGA G|-----CGU 2221 U-CUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCGA-U 2341 GAAGGUG-U- A-UU(-GAGA -)AGU--AUG CUGG|AGGUA U-CAGAAGUG CGAAUGC-UG 2401 AC|GUG-AGU A--ACGACAA AACGGG(UGA AAAA)CCCGU U|CGCU-GAA AGACCAAGGG 2461 UUCCAG-UCC AACG-(UUAA U)CG|G-GGC UGGGUGAGU| CGA|C-CCCU AAGGCGAGGC 2521 C(GAGA)-G- CGGU-AGUCG AUGG-GAAAU UGG-(UU-AA UAUU)C-CAA U|AC|uu-c- 2581 ug-ugu-aau ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga u------gag a--gga-cgg agaaaguua- aguc-a-|gc c-ugg(cg-- 2761 uugg-u-ugu --)cc-aggu -|gaa----- ---------- -aggcaguag gcau------ 2821 ---gcau-cu uagg(ca-aa -u-)cc|g-- gggugcucu- ---------- -aug-cugag 2881 a----gcu|g au-|------ -----agcaa g(-cuag--) uuuacuagu- ------gaag 2941 --uggcugau acuaug---| cuuccaggaa a-agucuc-u aagcuuca-- -------g-u 3001 uacaca--gg a|a|UCGUAC CCUAAACC(G ACACA)GG|U GG-UCAGGU- C-(GAGUA)G 3061 ACCAAAGCGC ||UUGAGAGA ACUCUGCUG- ---------- ----AAGGAA CUAGGCAAAA 3121 UGGUACCGUA AC(-UUCG)G GAGAAGGUAC |gcugcugac -ggu------ ----gauagg 3181 a(-cuugc)u ccuuga---- -----gcua- uuggcag-c| c(ACA)GAAA CCAGGCC-CC 3241 UG|CAACU-- ---GU(UUAU UAAAA)ACAU AGCACUCUG| CAAACAC(GA AA------)G 3301 UGGACGU-AU AGGGUGUGA- UGCCUGCCCG GU|GCUG-GA A-GGUUAAUU GAUGGG---- 3361 GU----uagc (g-uaa)gcg aa------GC ------UCUU GAUCGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|CUCGGG(U 3481 AA-U)UCCGA C|CUGCACGA AUGGCGUAAC GA-CUUCCCC UCUGUCUCCA GCAUCGGCUC 3541 A|GCGAAAUU |GAAUUCC-C CG(UGAAGAU C)GGGGGUAC CCGCGGU-CA GACGGAAAGA 3601 CCCUAUGA|A CCU-UUACUG C|AGCUUUGC AGU|GGCAUC AGAGACAUUC UGUGUAGGAU 3661 AGGUGGGAGG CUUUGAAA-- CCGGGGC(GC CA)GUUCCGG UGGAGCCAUC -C-UUGAAAU 3721 ACCACC|CUG A-CUGUUUCU GAU-GUCUAA -CCGAGG--- -CCUG(--UU -AGC)-CAGG 3781 UCCGG-GACC CUGCAUGGUG GGGCAGUUUG ACUG(GGG)C GGUC|GCCUC C(CAA-AGUG 3841 UAAC)GGAGG C|N|C|GCGA UGGUGGGC|U CAGGUCGG(U CGGAAA)CCG ACUGUC-GA| 3901 GU(G|CAAUG )GCAUAAGCC CGCCUGACUG UGAGAG(UGA CAG)CUCGAU CAGAGAC(GA 3961 AA)GU-CGGC |CAUAGUGAU CCGGUGGUCC CG(CGUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|UAGG|G AUAACAG|GC UGA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GGAG 4141 C---A)-GGU CCCAAGGGU| UCGGC(UGUU C)GC-CGAUU AAAGUGGUAC G-UGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|UG-UUG 4261 GAGACUU|GA -|GAGGAUU- UGU------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGAUGA|ACA UACCUCUGGU GCACCGGU|U GUCGC(GC-C A-)CUGGCA- CAGCCGGGUA 4381 GCU-AAGUGU GGACGGGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAGnn nnnnnn|nnn 4441 nnnnnnnnnn n|nn|nnnnn n(-nnn--)n nnnnn-nnn- nnnn|-nn|n nnnn-(nnnn 4501 nn-n)nnnnn -nnnnnnn|n nnnn|nnnnn -nnnnnnnn- -(nnnn-)-- nnnnn|nn-n 4561 nnnn|n|nnn nnnnnnnnn- nnnnnnnnn| nnnnnn-nnn n-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS A.europa.2 4759 bp RNA RNA 01-NOV-1997 DEFINITION Acetobacter europaeus.; 23S ribosomal RNA; 23S rRNA. ACCESSION Y15288 KEYWORDS 23S ribosomal RNA; 23S rRNA. SOURCE Acetobacter europaeus. ORGANISM Acetobacter europaeus. REFERENCE 1 (bases 1 to 2614) AUTHORS Trcek,J., Boesch,C., Raspor,P. and Teuber,M. TITLE Acetobacter europaeus strain JK2, a new acetic acid independent strain isolated from cider vinegar JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2614) AUTHORS Trcek,J. TITLE Direct Submission JOURNAL Submitted (30-OCT-1997) J. Trcek, Laboratory of Food Microbiology, ETH Zurich, Schmelzbergstrasse 9, CH-8092 Zurich, SWITZERLAND STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: Y15288 BASE COUNT 668 a 611 c 833 g 500 t 2147 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- ---------A AUGAGCGCG- A-UAAGGGCA UUCGGUGGAU 121 G|CCUUGG|C ACCAGG|AG| GC-GAUGAAA GA|CGUG(GC AC-GC-)U|- GCG-AAAAGC 181 CAUGGG|-GA GCC(G-CG-A GCA-)GGCUU UG-AUC-CGU GGGUA|UCUG AAUGGG(GCA 241 A)CCC|ACCC A---(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----gcga)- --UGGGU-AU CA-UGUUCU( 481 GA-AUACA-- UA)GGG-ACA -U-G--AGG- C-GAAC|CC- GGGGAACU|G A(AACA)UCU 541 AAGUAcCCCG GAGGAAAAGA CAUC(-AAUU --)GAGAU|U CU-GCUAGUA GU(GGCGA)G 601 CGA-ACG-CG GA-ACA-GGC C--------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- -aguguucau uuuugaagaa gcaGAAc-gg a-a(u-ggaa a)g-uccggc 781 |c(aua)gcG GG(UGAUAGC )CCCGU-Aug c-guaguguc aggaaugauc ---------- 841 ---------- ---------- -----cuuGA GUAGGGCGGG A(CACGUG-A AA)UCCUGUC 901 UGAACAU-GG G-GG(GACCA C)CC-UCC-A AGCCUAA--- -AUACUCCCU GGUGACCGAU 961 AGUG-AAC-A AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GAC GA-)GGGGA- 1021 -GUGAAA-UA G-ACCUGAAA CCGA-AUGCC UACAA-G-CA GUCGGAGCCU --C------- 1081 --------(- ---uuau--) ---------- -----G-GGG UGACGGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAG UUUC-UGUU- UGCAGC-AAG CUUAAGCC-( -G-UUA)-GG 1201 U-GUAGGCGC AGC(GAAA-) GCGAGUCU(G AA-CA)GGGC GA-------- ---------- 1261 ---------- ------c-ga G-UUGCUGGC AGAA-GACCC GAAAC-CGA- GUGA-UCUAG 1321 CCAUGGC|CA GGCUGAAGGU GCGG(UAAC) AC-GCACUGG AGGGCCGAAC C-CACGCCU( 1381 -GUUGAAAA) AGUCG|GGG- AUGAG-CUGU GGCUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 CGGAAAUAGC UGGUUCUCCG CGAAAUCUAU (-UGAG)GUA GACC|-GUCG AGUA----U| 1501 -UAC|CCCGG G|GGGUAG|A GC-ACUGG-A UGGGCUA-GG |-GGGGC(cc aaa)GCCUUA 1561 CCAAACCUAA -CCAAACUCC GAA-UA-|CC C-G-G-A--A GUAU---gA| GCU-CGGCAG 1621 ACAGAC--AG U-GGGU(GCU AAG)GUCCAU -UGUC-GAGA GGG(-AAACA G-)CCCAGAC 1681 CACCAGCUAA G-GC|CCCC- AAAUC-GUGG -C-UAA-GUG ------GGAA AGGAUGUG-G 1741 GGAUUCCAA- AACAACCAGG AGGUUGGC(U UAGAAGCA)G CCAU-CCU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG GUcua--aua GA-AAC-CC- -UGC|GCCGA AAAU-GUAA- 1861 CGGGGCUCAA GCCAC-G|U| GCCGAAGCU| GUGG|gugca uac----(ua u--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -guaugcgc- GG-UAGCGGA G|-----CGU 2221 UuCCG-UAG- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-UCUG-U 2341 GAAGGAG-Ac G-GG(-GUGA -)CCC--UCU CUGG|AGAUA U-CGGAAGUG CGAAUGC-UG 2401 AC|AUG-AGU A--GCGACAA ACAGUG(CGA GAAA)CACUG U|CGCC-GAA AGUCCAAGGG 2461 UUCCUG-CGC AAGG-(UUAA U)CC|G-CGC AGGGUGAGC| CGG|C-CCCU AAGGCGAGGG 2521 C(GAAA)-G- CG-U-AGUCG AUGG--AACC GGg-(c--AA UAUU)--CCG G|GC|cu-g- 2581 cc-aga---- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------a g--uga-cga au-gcaaua- uguu-g-|uc g-ggu(cuua 2761 ucggau-ug- --)au-ccgg -|-------- ---------- ---------- ---------- 2821 ---------- ----(----- ---)--|--- ---------- ---------- ---------- 2881 --------|- ---|------ ---------- -(-------) ---------- ---------- 2941 ---cuuu-ug gcgc-----| auuccaggaa a-uagc---- ---------- ---------u 3001 cuggcauaua g|a|CCGUAC CCGAAACC(G ACACA)GG|U GG-ACUGGU- A-(GAGAA)U 3061 ACCAAGGCGC ||UUGAGAGA ACGAUGCUG- ---------- ----AAGGAA CUAGGCAAAU 3121 UACUUGCGUA AC(-UUCG)G GAUAAGCAAG |accc----- -guc------ ------agug 3181 g(-gcaa-)c cauu------ ------ggc- ----ggg-U| G(GCA)CAGA CCAGGGG-GU 3241 AG|CGACU-- ---GU(UUAG UAAAA)ACAC AGGGCUGUG| CGAAGUC(GA GA------)G 3301 ACGACGU-AU ACGGCCUGA- CGCCUGCCCG GU|GCCG-GA A-GGUUAAGA GGAGGU---- 3361 GU-------- (G-CAA)--- --------GC ------ACCG AAUUGAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-CUUCCCC GCUGUCUCCA GCAUCGGCUC 3541 A|GCGAAAUU |GAAUUCC-C CG(UGAAGAU G)CGGGGUA- CCGCGGU-CA GACGGAAAGA 3601 CCCUAUGA|A CCU-UUACUG C|AGCUUUGC AGU|GGCAUC AGAGACAUUC UGUGUAGGAU 3661 AGGUGGGAGG CUUUGAAA-- CCGGGGC(GC CA)GUUCCGG UGGAGCCAUC -C-UUGAAAU 3721 ACCACC|CUG A-CUGUUUCU GAU-GUCUAA -CCGAGG--- -CCUG(--UU -AGC)-CAGG 3781 UCCGG-GACC CUGCAUGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(CAA-AGUG 3841 UAAC)-GAGG C|G|C|GCGA UGGUGGGC|U CAGGUCGG(U CGGAAA)CCG ACUGUC-GA| 3901 GU(G|CAAUG )GCAUAAGCC CGCCUGACUG UGAGAG(UGA CAG)CUCGAU CAGAGAC(GA 3961 AA)GU-CGGC |CAUAGUGAU CCGGUGGUCC CG(CGUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|UAGG|G AUAACAG|GC UGA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GGAG 4141 C---A)-GGU CCCAAGGGU| UCGGC(UGUU C)GC-CGAUU AAAGUGGUAC G-UGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|UG-UUG 4261 GAGACUU|GA -|GAGGAUU- UGU------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGAUGA|ACA UACCUCUGGU GCACCGGU|U GUCGC(GC-C A-)G--GCA- CAGCCGGGUA 4381 GCU-AAGUGU GGACGGGAUA ACCGCU(GAA AGHUUCUA)A GCGGGAAN~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS R.ricketts 4759 bp RNA RNA 11-JAN-191 DEFINITION Rickettsia rickettsii. ACCESSION No information KEYWORDS No information. SOURCE Rickettsia rickettsii. ORGANISM Rickettsia rickettsii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U11022 LOCUS RRU11022 3069 bp DNA BCT 30-JUN-1994 DEFINITION Rickettsia rickettsii Sawtooth 23S rRNA and 5S rRNA genes, partial sequence, and 23S-5S internal transcribed spacer. ACCESSION U11022 KEYWORDS . SOURCE Rickettsia rickettsii ORGANISM Rickettsia rickettsii Eubacteria; Proteobacteria; alpha subdivision; Rickettsiales; Rickettsiaceae; Rickettsia. REFERENCE 1 (bases 1 to 3069) AUTHORS Stothard,D.R., Clark,J.B. and Fuerst,P.A. TITLE The ancestral divergence of Rickettsia bellii from the spotted fever and typhus groups of Rickettsia, and the antiquity of the genus Rickettsia JOURNAL Int. J. Syst. Bacteriol. (1994) In press STANDARD full automatic REFERENCE 2 (bases 1 to 3069) AUTHORS Fuerst,P.A. TITLE Direct Submission JOURNAL Submitted (17-JUN-1994) Paul A. Fuerst, The Ohio State University, Department of Molecular Genetics, 484 West Twelfth Avenue, Columbus, OH 43210, USA STANDARD full automatic COMMENT NCBI gi: 506788 FEATURES Location/Qualifiers rRNA <1..2699 /product="23S ribosomal RNA" /note="large subunit ribosomal RNA; base 1 estimated to correspond to residue 63 in the 23S rRNA" misc_RNA 2700..2970 /product="23S-5S internal transcribed spacer" /note="23S-5S ITS" rRNA 2971..>3069 /product="5S ribosomal RNA" /note="corresponds to first 99 bases of 5S rRNA sequence" source 1..3069 /strain="Sawtooth" /organism="Rickettsia rickettsii" /specific_host="Dermacentor andersonii" BASE COUNT 914 a 592 c 822 g 737 t 4 others ORIGIN BASE COUNT 789 a 539 c 752 g 615 t 2064 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------nn nnnnnnnnn- n-nnnnnnnn nnnnnnnnnn 121 n|nnnnnn|n nnnnnn|nn| nn-nnnnnnn nn|nnnn(nU AC-GC-)U|- GCG-AUAAGC 181 UUCGGG|-GA GUU(G-CG-A AUA-)AACUU CG-AUC-CGA AGAUU|UCCG AAUAGG(GAA 241 A)CCU|ACCU AA--(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----uuua)- -UUAGGU-AU UG-UAUAGU( 481 GA-AUACA-- UA)GCU-AUA -U-G--AGG- C-AAAC|CC- AGCGAACU|G A(AAUA)UCU 541 AAGUA-GCUG GAGGAAAGGA CAUC(-AACC --)GAGAC|U CC-GUUAGUA GU(GACGA)G 601 CGA-AUG-CG GA-CCA-GGC C--------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- -aguggcuuc aaaaaaauaa cuaAAAc-aa c-a(u-ggaa a)g-guugac 781 |c(aua)gaG GG(UGAUAGU )CCCGU-Aua g-guaaaaag uuugaaguc- ---------- 841 ---------- ---------- -----cuuGA GUAAGGCGGG A(CACGUG-A AA)UCCUGUC 901 UGAACAU-AG G-GG(GACCA C)CC-UCU-A AGCCUAA--- -GUACUCUCU AGUGACCGAU 961 AGUG-AAC-A AGUACC(GUG A)-GGGA-AA GGUGAAAA-G UACCCC(GAC AA-)GGGGA- 1021 -GUGAAA-UA GUAUCUGAAA CCAA-AUGCU UACAA-G-CA GUCGGAGCAA --Gc-gua-- 1081 --------(- ---uuua--) ---------- uauguC-UUG UGACGGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAG-UUUA- UCUAGC-AAG CUUAAGCC-( -G-UUA)-GG 1201 U-GUAGGCGU AGC(GAAA-) GCGAGUCU(G NA-UA)GGGC Gu-------- ---------- 1261 ---------- ------u-uA G-UUAGAUGA AUUA-GACCC GAAAC-CGG- GUGA-UCUAG 1321 CCAUGGC|CA GGUUGAAAGC GGAG(UAAA) AU-CCACUGA AGGACCGAAC C-CACUACU( 1381 -GUUGAAAA) AGUAG|GGG- AUGAG-CUGU GGUUAGGGGU (-GNAAG)GC CAAUCAAACU 1441 CGGAUAUAGC UGGUUCUCUG CGAAAUCUAU (-UUAG)GUA GAGC|-GUUA UAGCg--aU| 1501 -UAC|CAUCG A|AGGUAG|A GC-ACUGA-A UGAGCUA-GG |-GGGUC(cc aca)GACUUA 1561 CCAAACUCAA -UCAAACUCC GAA-UG-|UC G-A-U-G--A GUAC----A| GCA-UAGCAG 1621 ACAGAC--UA U-GGGU(GCU AAG)GUCCAU -AGUC-GAGA GGG(-AAAAA G-)CCCAGAC 1681 CGCCAUCUAA G-GU|CCCU- AAAUC-AUGA -C-UAA-GUG ------UUAA AGGAUGUG-A 1741 GAAGACCAA- AACAACUAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUA GUcuaaaUAA GU-UUU-CU- -UGC|GCCAA CAAU-GUAA- 1861 CGGGGCUCAA GUCAU-G|U| ACCGAAGAU| GCGG|guuua ugc----(au uug------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -gcauaaau- GG-UAGCGGA G|-----CGU 2221 U-CCG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCUG-C 2341 GAAGGUG-A- A-CC(-GUAA -)GGU--UUG CUGG|AGGUA U-CGGAAGUG AGAAUGC-UG 2401 AC|AUA-AGU A--GCGAUAA AGAAUG(UNA GAAA)CAUUC U|CGCC-GAA AGUCCAAGGG 2461 UUCUUG-CGU AAAG-(UUAU U)CU|G-CGC AAGGUUAGU| CGG|C-CCCU AAGAUGAGGC 2521 U(GAAA)-G- GCGU-AGUCG AUGG-GAAUC AGG-(UU-AA UAUU)C-CUG A|AC|cu-g- 2581 aa-gga---- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------u g--uga-cga aa--auagua aauu-g-|ua c-agu(cuua 2761 uuggau-ug- --)au-ugug -|-------- ---------- ---------- ---------- 2821 ---------- ----(----- ---)--|--- ---------- ---------- ---------- 2881 --------|- ---|------ ---------- -(-------) ---------- ---------- 2941 ---cagu-ga auau-----| uuuccaggaa a-ua------ ---------- -----aca-c 3001 cuucauuaua g|a|CCGUAC CCGAAACC(G ACACA)GG|U GG-ACAGGU- A-(GAGUA)U 3061 ACCAAGGCGC ||UUGAGAGA ACGAUGCUG- ---------- ----AAGGAA CUAGGCAAAU 3121 UGCAUCUGUA AC(-UUCG)G AAGAAAGAUG |accu----- -gua------ ------uaug 3181 g(-gcaa-)c caug------ ------ugc- ----agg-U| G(GCA)CAAG CUAGGGG-GU 3241 AG|CGACU-- ---GU(UUAU UAAAA)ACAC AGGGCUCUG| CAAAGUC(AA UA------)G 3301 ACGAUGU-AU AGGGUCUGA- CGCCUGCCCA GU|GCUG-GA A-GAUUAAAA GGAGGG---- 3361 GU-------- (G-CAA)--- -------AGC ------UCUG AAUUGAAGUC |CCAGUGAAC 3421 |-GGC|GGCC GU(AACUAUG )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AUGGCGUAAC GA-UUUCCCC ACUGUCUCCA GUAUCGACUC 3541 A|GCGAAAUU |GAAUUCU-C CG(UGAAGAU G)CGGAGUUC CCGCGGU-CA GACGGAAAGA 3601 CCCCGUGA|A CCU-UUACUA U|AGCUUUGC ACU|GGUGUU AGGAAUCAGA UGUGCAGGAU 3661 AGGUGGGAGA CUACGAAG-- CGAAGGC(GU CA)GCCUUUG UGGAGUCACC -C-UUGAGAU 3721 ACCACC|CUU U-UGGUGCUU GAC-AUCUAA -CCGAGG--- -UCCU(-UGA -AUC)-AGGA 3781 UCCGA-GACA AUGCAUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|GCCUC C(CAA-AGAG 3841 UAAC)GGAGG C|G|C|GCGA UGGUUAGC|U CAGGUUGG(U CGGAAA)UCA ACUUUUaGA| 3901 GU(G|CAAUG )GCAUAAGCU AGCCUGACUG CGAGUC(UGA CAA)AACGAG CAGAGAC(RA 3961 AA)GU-CGGU |CAUAGUGAU CCGGUGGUCC CG(AGUGGA) AGG|GCCAUC GCUCAAC|GA 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UGA--UGAUU UCCAAGC(G- UCC-AUA)GC 4081 GACGAAA-UC GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GGAG 4141 A---A)-GGU CCCAAGGGU| UCGGC(UGUU C)GC-CGAUU AAAGUGGUAC G-UGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|UG-UAG 4261 GAAGUUU|GA -|GAGGAUC- UGC------- -------CUU (UAGUAC(GA GA)GGACC)G 4321 AGGUGG|ACG UACCCCUGGU GGACCAGU|U GUCGU(GC-C A-)ACGGCA- -AGCUGGGUA 4381 GCU-AAGUAC GGAAGGGAUA ACUGCU(GAA UGCAUCUA)A GCAGGAAACC CACCUC|AAA 4441 ACUAGACUUC C|CC|----- -(------)- -------aU- UAGA|-GC|C GUGG-(AAGA 4501 CC-A)CCACG -UUGAUAG|G UCGG|GUGUG -GAAGCACA- -(GUAA-)-- UGUGU|GU-A 4561 GCUA|A|CCG AUACUAAUA- GCUCGAUUG| AUUUAC-UUU G-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS R.bellii 4759 bp RNA RNA 11-JAN-191 DEFINITION Rickettsia bellii. ACCESSION No information KEYWORDS No information. SOURCE Rickettsia bellii. ORGANISM Rickettsia bellii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U11015 LOCUS RBU11015 3092 bp DNA BCT 30-JUN-1994 DEFINITION Rickettsia bellii 369-C 23S rRNA and 5S rRNA genes, partial sequence, and 23S-5S internal transcribed spacer. ACCESSION U11015 KEYWORDS . SOURCE Rickettsia bellii ORGANISM Rickettsia bellii Eubacteria; Proteobacteria; alpha subdivision; Rickettsiales; Rickettsiaceae; Rickettsia. REFERENCE 1 (bases 1 to 3092) AUTHORS Stothard,D.R., Clark,J.B. and Fuerst,P.A. TITLE The ancestral divergence of Rickettsia bellii from the spotted fever and typhus groups of Rickettsia, and the antiquity of the genus Rickettsia JOURNAL Int. J. Syst. Bacteriol. (1994) In press STANDARD full automatic REFERENCE 2 (bases 1 to 3092) AUTHORS Fuerst,P.A. TITLE Direct Submission JOURNAL Submitted (17-JUN-1994) Paul A. Fuerst, The Ohio State University, Department of Molecular Genetics, 484 West Twelfth Avenue, Columbus, OH 43210, USA STANDARD full automatic COMMENT NCBI gi: 506779 FEATURES Location/Qualifiers rRNA <1..2697 /product="23S ribosomal RNA" /note="large subunit ribosomal RNA; 5' nucleotide estimated to correspond to approximately base 63 of an intact 23S rRNA" misc_RNA 2698..2993 /product="23S-5S internal transcribed spacer" rRNA 2994..>3092 /product="5S ribosomal RNA" /note="corresponds to first 99 bases of 5S rRNA sequence" source 1..3092 /strain="strains 369-C and G2D42" /organism="Rickettsia bellii" /specific_host="Dermacentor variabilis" BASE COUNT 912 a 604 c 834 g 741 t 1 others ORIGIN BASE COUNT 786 a 537 c 761 g 612 t 2063 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------nn nnnnnnnnn- n-nnnnnnnn nnnnnnnnnn 121 n|nnnnnn|n nnnnnn|nn| nn-nnnnnnn nn|nnnn(nU AC-GC-)U|- GCG-AUAAGC 181 UUCGGG|-GA GCU(G-CG-A AUA-)AGCUU UG-AUC-CGA AGAUU|UCCG AAUGGG(GGA 241 A)CCC|ACCU AA--(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----uuua)- -UUAGGU-AU UG-UAUAGU( 481 GA-AUACA-- UA)GCU-AUA -U-G--AGG- C-AAAC|CC- AGCGAACU|G A(AAUA)UCU 541 AAGUA-GCUG GAGGAAAGGA CAUC(-AACC --)GAGAC|U CC-GUUAGUA GU(GACGA)G 601 CGA-AUG-CG GA-CCA-GGC C--------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- -aguggcuuc aaaaaaauaa cuaAAAc-aa c-a(u-ggaa a)g-guugac 781 |c(gua)gaG GG(UGAUAGU )CCCGU-Aua g-guaaaaag uuugaaguc- ---------- 841 ---------- ---------- -----cuuGA GUAAGGCGGG A(CACGUG-A AA)UCCUGUC 901 UGAACAU-AG G-GG(GACCA C)CC-UCU-A AGCCUAA--- -GUACUCUCU AGUGACCGAU 961 AGUG-AAC-A AGUACC(GUG A)-GGGA-AA GGUGAAAA-G UACCCC(GAC AA-)GGGGA- 1021 -GUGAAA-UA GUAUCUGAAA CCAA-AUGCU UACAA-G-CA GUCGGAGCAA --Gc-a---- 1081 --------(- ---uuua--) ---------- --uguC-UUG UGACGGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAG-UUUA- UCUAGC-AAG CUUAAGCC-( -G-UUA)-GG 1201 U-GUAGGCGU AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC Gacu------ ---------- 1261 ---------- ------a-uA G-UUAGAUGA AUUA-GACCC GAAAC-CGA- GUGA-UCUAG 1321 CCAUGGC|CA GGUUGAAAGC GGAG(UAAA) AU-CCGCUGA AGGACCGAAC C-CACUACU( 1381 -GUUGAAAA) AGUAG|GGG- AUGAG-CUGU GGUUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 CGGAUAUAGC UGGUUCUCUG CGAAAUCUAU (-UUAG)GUA GAGC|-GUUA UAGCg--gU| 1501 -UAC|CAUCG G|AGGUAG|A GC-ACUGA-A UGAGCUA-GG |-GGGUC(cc aca)GACUUA 1561 CCAAACUCAA -UCAAACUCC GAA-UG-|CC G-A-U-G--A GUAU----A| GCA-UAGCAG 1621 ACAGAC--UA U-GGGU(GCU AAG)GUCCAU -AGUC-GAGA GGG(-AAAAA G-)CCCAGAC 1681 YGCCAUCUAA G-GU|CCCU- AAAUC-AUGA -C-UAA-GUG ------UUAA AGGAUGUG-A 1741 GAAGACCAA- AACAACUAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUA GUcuaaaUAA GU-UUU-CU- -UGU|GCCAA CAAU-GUAA- 1861 CGGGGCUCAA GUCAU-G|U| ACCGAAGAU| GCGG|auuca cac----(au uug------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -gugugagu- GG-UAGCGGA G|-----CGU 2221 U-CCG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCUG-U 2341 GAAGGUG-A- A-CC(-GUAA -)GGU--UUG CUGG|AGGUA U-CGGAAGUG AGAAUGC-UG 2401 AC|AUA-AGU A--GCGAUAA AGAAUG(CGA GAAA)CAUUC U|CGCC-GAA AGUCCAAGGG 2461 UUCUUG-CGU AAAG-(UUAA U)CU|G-CGC AAGGUUAGU| CGG|U-CCCU AAGGUGAGGC 2521 U(GAAA)-G- GCGU-AAUCG AUGG-GAAUC AGG-(UU-AA UAUU)C-CUG A|AC|cu-g- 2581 aa-gga---- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------u g--uga-cga aa--guagua aguu-g-|ua c-agu(cuua 2761 uuggau-ug- --)au-ugug -|-------- ---------- ---------- ---------- 2821 ---------- ----(----- ---)--|--- ---------- ---------- ---------- 2881 --------|- ---|------ ---------- -(-------) ---------- ---------- 2941 ---cagc-ga auau-----| uuuccaggaa a-ua------ ---------- -----aca-c 3001 cuucauuaua g|a|CCGUAC CCGAAACC(G ACACA)GG|U GG-ACAGGU- A-(GAGUA)U 3061 ACCAAGGCGC ||UUGAGAGA ACGAUGCUG- ---------- ----AAGGAA CUAGGCAAAU 3121 UGCAUCUGUA AC(-UUCG)G AAGAAAGAUG |accc----- -aca------ ------uaug 3181 g(-gcaa-)c cauu------ ------ugu- ----ggg-U| G(GCA)CAAG CUAGGGG-GU 3241 AG|CGACU-- ---GU(UUAU UAAAA)ACAC AGGGCUCUG| CAAAGUC(AA UA------)G 3301 ACGAAGU-AU AGGGUCUGA- CGCCUGCCCA GU|GCUG-GA A-GAUUAAGA GGAGGG---- 3361 GU-------- (G-CAA)--- -------AGC ------UCUG AAUUGAAGUC |CCAGUGAAC 3421 |-GGC|GGCC GU(AACUAUG )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AUGGCGUAAC GA-UUUCCCC GCUGUCUCCA GUAUCGACUC 3541 A|GCGAAAUU |GAAUUCU-C CG(UGAAGAU G)CGGAGUUC CCGCGGU-CA GACGGAAAGA 3601 CCCCGUGA|A CCU-UUACUA U|AGCUUUGC ACU|GGUGUU AGGAAUCAAA UGUGCAGGAU 3661 AGGUGGAAGA CUAUGAAG-- CAGAGGC(GU CA)GCCUUUG UGGAGUCACC -C-UUGAGAU 3721 ACCACC|CUU U-UGGUUCUU GAU-AUCUAA -CCGAGA--- -CCCU(-UGA -AUC)-AGGG 3781 UCCGA-GACA AUGCAUGGUG GG-UAGUUUG ACUG(GGG)C GGUA|GCCUC C(CAA-AGAG 3841 UAAC)GGAGG C|G|U|GCGA UGGUUAGC|U CAGGUUGG(U CGGAAA)UCA ACUUUUaGA| 3901 GU(G|CAAUG )GCAUAAGCU AGCCUGACUG CGAGUC(UGA CAA)GACGAG CAGAGAC(GA 3961 AA)GU-CGGU |CAUAGUGAU CCGGUGGUCC CG(AGUGGA) AGG|GCCAUC GCUCAAC|GA 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UGA--UGAUU UCCAAGC(G- UCC-AUA)GC 4081 GACGAAA-UC GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GGAG 4141 A---A)-GGU CCCAAGGGU| UCGGC(UGUU C)GC-CGAUU AAAGUGGUAC G-UGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GAUAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|UG-UAG 4261 GAAGUUU|GA -|GAGGAUC- UGC------- -------CUU (GAGUAC(GA GA)GGACC)G 4321 AGGUGG|ACG UACCCCUGGU GGACCAGU|U GUCGU(GC-C A-)ACGGCA- -AGCUGGGUA 4381 GCU-AAGUAC GGAAGGGAUA ACCGCU(GAA UGCAUCUA)A GCAGGAAACC CACCUC|AAA 4441 ACUAGACUUC C|CC|----- -(------)- -------aU- UAGA|-GC|C GUGG-(AAGA 4501 CC-A)CCACG -UUGAUAG|G UCAG|GUGUG -GAAGCACA- -(GUAA-)-- UGUGU|GU-A 4561 GCUA|A|CUG AUACUAAUA- GCUCGAUUG| AUUUAC-UUU G-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS R.prowazek 4759 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U11018 + Z49077 LOCUS RPU11018 3056 bp DNA BCT 30-JUN-1994 DEFINITION Rickettsia prowazekii 22-2 23S rRNA and 5S rRNA genes, partial sequence, and 23S-5S internal transcribed spacer. ACCESSION U11018 KEYWORDS . SOURCE Rickettsia prowazekii ORGANISM Rickettsia prowazekii Eubacteria; Proteobacteria; alpha subdivision; Rickettsiales; Rickettsiaceae; Rickettsia. REFERENCE 1 (bases 1 to 3056) AUTHORS Stothard,D.R., Clark,J.B. and Fuerst,P.A. TITLE The ancestral divergence of Rickettsia bellii from the spotted fever and typhus groups of Rickettsia, and the antiquity of the genus Rickettsia JOURNAL Int. J. Syst. Bacteriol. (1994) In press STANDARD full automatic REFERENCE 2 (bases 1 to 3056) AUTHORS Fuerst,P.A. TITLE Direct Submission JOURNAL Submitted (17-JUN-1994) Paul A. Fuerst, The Ohio State University, Department of Molecular Genetics, 484 West Twelfth Avenue, Columbus, OH 43210, USA STANDARD full automatic COMMENT NCBI gi: 506783 FEATURES Location/Qualifiers rRNA <1..2699 /product="23S ribosomal RNA" /note="large subunit ribosomal RNA; position 1 estimated to correspond to residue 63 in 23S rRNA" misc_RNA 2700..3029 /product="23-5S internal transcribed spacer" /note="23S-5S ITS" rRNA 2958..>3056 /product="5S ribosomal RNA" /note="corresponds to first 99 bases of 5S rRNA sequence" source 1..3056 /strain="22-2" /organism="Rickettsia prowazekii" /specific_host="Pediculus humanus" BASE COUNT 922 a 570 c 799 g 761 t 4 others ORIGIN BASE COUNT 814 a 528 c 760 g 643 t 2014 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- ------UAAA GUAAAUGUA- A-UAAGGGCA UUUGGUGGAU 121 G|CCUUGG|n nnnnnn|nn| nn-nnnnnnn nn|nnnn(nU AC-GU-)U|- GCG-AUAAGC 181 UUCGGG|-GA GCU(G-CG-A AUA-)AGCUU YG-AUC-CGA AGAUU|UCCG AAURGG(GAA 241 A)CCU|ACCU AA--(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----uuua)- -UUAGGU-AU UG-UAUAGU( 481 GA-AUACA-- UA)GCU-AUA -U-G--AGG- C-GAAC|CC- AGCGAACU|G A(AAUA)UCU 541 AAGUA-GCUG GAGGAAAGGA CAUC(-AACC --)GAGAC|U CC-GUUAGUA GU(GACGA)G 601 CGA-ACG-CG GA-CCA-GGC C--------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- -agugacuuc aaaaaaauaa cuaAAAc-aa u-a(u-ggaa a)g-auugac 781 |c(aua)gaG GG(UGAUAGU )CCCGU-Aua g-guaaaaag uuugaaguu- ---------- 841 ---------- ---------- -----uuuGA GUAAGGCGGG A(CACGUG-A AA)UCCUGUU 901 UGAACAU-AG G-GG(GACCA C)CC-UCU-A AGCCUAA--- -GUACUCUCU AGUGACCGAU 961 AGUG-AAC-A AGUACC(GUG A)-GGGA-AA GGUGAAAA-G UACCCC(GAC AA-)GGGGA- 1021 -GUGAAA-UA GUAUCUGAAA CCAA-AUGCU UACAA-G-CA GUCGGAGCAA --Gc-aua-- 1081 --------(- ---uuua--) ---------- uauguC-UUG UGACGGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAG-UUUA- UCUAGC-AAG CUUAAGCC-( -G-UUA)-GG 1201 U-GUAGGCGU AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC Gu-------- ---------- 1261 ---------- ------u-uA G-UUAGAUGA AUUA-GACCC GAAAC-CGG- GUGA-UCUAG 1321 CCAUGGC|CA GGUUGAAAGC GGAG(UAAA) AU-CCGCUGA AGGACCGAAC C-CACUACU( 1381 -GUUGAAAA) AGUAG|GGG- AUGAG-CUGU GGUUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 CGGAUAUAGC UGGUUCUCCG CGAAAUCUAU (-UUAG)GUA GAGC|-GUUA UAGCg--aU| 1501 -UAC|CAUCG A|AGGUAG|A GC-ACUGA-A UGAGCUA-GG |-GGGUU(cu aca)GACUUA 1561 CCAAACUCAA -UCAAACUCC GAA-UG-|UC G-A-U-G--A GUAC----A| GCA-UAGCAG 1621 ACAGAC--UA U-GGGU(GCU AAG)GUCCAU -AGUC-GAGA GGG(-AAAAA G-)CCCAGAC 1681 CGCCAUCUAA G-GU|CCCU- AAAUC-AUGA -C-UAA-GUG ------UUAA AGGAUGUG-A 1741 GAAGACCAA- AACAACUAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUA GUcuaaaUAA GU-UUU-YU- -UGC|GCCAA CAAU-GUAA- 1861 CGGGGCUCAA GUCAU-G|U| ACCGAAGAU| GCGG|auuua ugc----(au uua------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -gcauaaau- GG-UAGCGGA G|-----CGU 2221 U-CCG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCUG-U 2341 GAAGGUA-A- A-CU(-GUAA -)GGU--UUG CUGG|AGGUA U-CGGAAGUG AGAAUGC-UG 2401 AC|AUA-AGU A--GCGAUAA AGAAUG(UGA GAAA)CAUUC U|CGCC-GAA AGUCCAAGGG 2461 UUCUUG-CGU AAAG-(UUAA U)CU|G-CGC AAGGUUAGU| CGG|C-CCCU AAGGUGAGGC 2521 U(GAAA)-G- GCGU-AAUCG AUGG-GAAUC AGG-(UU-AA UAUU)C-CUG A|AC|cu-a- 2581 aa-gga---- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------u g--uga-cga aa--auagua aauu-g-|ua u-agu(cuua 2761 uuggau-ug- --)au-ugug -|-------- ---------- ---------- ---------- 2821 ---------- ----(----- ---)--|--- ---------- ---------- ---------- 2881 --------|- ---|------ ---------- -(-------) ---------- ---------- 2941 ---cagu-ga auau-----| uuuccaggaa a-ua------ ---------- -----gca-c 3001 cuuuauuaua g|a|CCGUAC CCAAAACC(G ACACA)GG|U GG-ACAGGU- A-(GAGUA)U 3061 ACCAAGGCGC ||UUGAGAGA ACGAUGCUG- ---------- ----AAGGAA CUAGGCAAAU 3121 UACAUCUGUA AC(-UUCG)G AAGAAAGAUG |accu----- -gug------ ------uaug 3181 g(-gcaa-)c caua------ ------ugc- ----agg-U| G(GCA)CAAG UUAGGGG-GU 3241 AG|CGACU-- ---GU(UUAU UAAAA)ACAC AGGGCUCUG| CAAAGUC(AA UA------)G 3301 ACGACGU-AU AGGGUCUGA- CGCCUGCCCA GU|GCUG-GA A-GAUUAAAA GGAGGG---- 3361 GU-------- (G-UAA)--- -------AGC ------UCUA AAUUGAAGUC |CCAGUGAAC 3421 |-GGC|GGCC GU(AACUAUG )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AUGGCGUAAC GA-UUUCCCC ACUGUCUCCA GUAUCGACUC 3541 A|GCGAAAUU |GAAUUCU-C CG(UGAAGAU G)CGGAGUUC CCGCGGU-CA GACGGAAAGA 3601 CCCCGUGA|A CCU-UUACUA U|AGCUUUGC ACU|GGUAUU AGAAAUCAAA UGUGCAGGAU 3661 AGGUGGGAGA CUACGAAG-- CAGAGGC(GU CA)GCCUUUG UGGAGUCACU -C-UUGAGAU 3721 ACCACC|CUU U-UGGUUUUU GAU-AUCUAA -CCGAGA--- -CUCU(-UGA -AUC)-AGGG 3781 UCCGA-GACA AUGCAUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|GCCUC C(CAA-ARAG 3841 UAAC)GGAGG C|G|C|GCGA UGGUUAGC|U CAGGUUGG(U CGGAAA)UCA ACUUUUaGA| 3901 GU(G|CAAUG )GCAUAAGCU AGCCUGACUG CGAGUC(UGA CAA)GACGAG CAGAGAC(GA 3961 AA)GU-CGGU |CAUAGUGAU CCGGUGGUUC CG(AGUGGA) AGG|GCCAUC GCUCAAC|GA 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UGA--UGAUU UCCAAGC(G- UCC-AUA)GC 4081 GACGAAA-UC GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GGAG 4141 A---A)-GGU CCCAAGGGU| UCGGC(UGUU C)GC-CGAUU AAAGUGGUAC G-UGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|UG-UAG 4261 GAAGUUU|GA -|GAGGAGC- UGC------- -------CUU (UAGUAC(GA GA)GGACC)G 4321 AGGUGG|ACG UACCCCUGGU GGACCAGU|U GUCGU(GC-C A-)ACGGCA- -AGCUGGGUA 4381 GCU-AAGUAC GGAAGGGAUA ACUGCU(GAA UGCAUCUA)A GCAGGAAACC CACCUC|AAA 4441 ACUAGACUUC C|CC|----- -(------)- -------aU- UAGA|-GC|C GUGG-(AAGA 4501 CC-A)CCACG -UUGAUAG|G UCGG|GUGUG -GAAGCACA- -(GUAA-)-- UGUGU|GU-A 4561 GCUA|A|CCG AUACUAAUA- GCUCGAUUG| AUUUAC-UUU G-------|c ugugagauua 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS Wol.pipien 4759 bp RNA RNA 11-JAN-191 DEFINITION Wolbachia pipientis. ACCESSION No information KEYWORDS No information. SOURCE Wolbachia pipientis. ORGANISM Wolbachia pipientis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U23710 LOCUS WPU23710 2712 bp DNA BCT 02-FEB-1996 DEFINITION Wolbachia pipientis 23S ribosomal RNA gene. ACCESSION U23710 NID g1173500 KEYWORDS . SOURCE Wolbachia pipientis. ORGANISM Wolbachia pipientis Eubacteria; Proteobacteria; alpha subdivision; Rickettsiales; Rickettsiaceae; Wolbachieae; Wolbachia. REFERENCE 1 (bases 1 to 2712) AUTHORS Bensaadi-Merchermek,N., Salvado,J.C., Cagnon,C., Karama,S. and Mouches,C. TITLE Characterization of the unlinked 16S rDNA and 23S-5S rRNA operon of Wolbachia pipientis, a prokaryotic parasite of insect gonads JOURNAL Gene 165, 81-86 (1995) REFERENCE 2 (bases 1 to 2712) AUTHORS Bensaadi-Merchermek,N., Salvado,J.C., Cagnon,C., Karama,S. and Mouches,C. TITLE Direct Submission JOURNAL Submitted (29-MAR-1995) Claude Mouches, Laboratoire de Ecologie Moleculaire - I.B.E.A.S., Universite de Pau et des pays de l'Adour, Avenue de l'Universite, Pau, 64000, France COMMENT NCBI gi: 1173500 FEATURES Location/Qualifiers source 1..2712 /organism="Wolbachia pipientis" /specific_host="Culex pipiens" /note="gonadial bacteria of the mosquito Culex pipiens" rRNA 1..2712 /product="23S ribosomal RNA" BASE COUNT 829 a 479 c 712 g 679 t 13 others ORIGIN BASE COUNT 829 a 479 c 712 g 679 t 2060 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- ---------A AAUAAAUUA- U-UAAGAGCA CUUGAUGGAU 121 G|CCUUGG|C GUUAAG|AG| GC-GAUGGAG GA|CGUG(GC AG-GCG)U|G GCG-AUAAGC 181 AGCGGG|-AA AUU(G-UC-A ACA-)AAUUU UG-AUC-CGC AGAUU|UCCG AAUGGG(GAA 241 A)CCC|AACU Agc-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----uua-)- gcUAGUU-Au au---auac( 481 ----uaa--- --)gua-u-- -a-u-aaAG- C-AAAC|UU- GGUGAACU|G A(AAUA)UCU 541 AAGUA-GCCG AAGGAAAAGA AAUC(-AACC --)GAGAU|U CU-GUUAGUA GU(GACGA)G 601 CGA-AAG-CG GA-AAA-GGC U--------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- -agugauuua aaaauaagaa uuaGAAu-ac u-c(u-ggaa a)u-gguaac 781 |c(aua)gaA GG(UGAUAGU )CCUGU-Aca a-auagaaag uuuuuaaauc ---------- 841 ---------- ---------- -----cuuGA GUAGAGCGGG G(CACGUG-A AA)UCCUGUU 901 UGAAUAU-GG G-GG(GACCA U)CC-UCC-A AGCCUAA--- -AUACUCCUU AGCGACCGAU 961 AGUG-AAC-A AGUACC(GUG A)-GGGA-AA GGUGAAAA-G ANACCN(--N NA-)GGGGA- 1021 -GUGAAA-UA GAAUCUGAAA UCAA-GUGCU UACAA-A-CA GUUGGAGCUC --ua-uauca 1081 a-------(- ---uuua--) ------uuga uauuua-gaG UGACAGCGUA CCU(UUU-GC 1141 AU|A)AUGG| -GUCAGCGAG UUAA-UCUA- UGAAGC-AAG CUUAAGAA-( -G-AUA)-GG 1201 U-GUAGGCGU AGC(GAAA-) GCAAGUCU(G AA-UA)GGGC GU-------- ---------- 1261 ---------- ------u-uA G-UUUUAUGG AUUA-GACCC GAAAC-CAA- GUGA-UCUAG 1321 UCAUGAC|CA GAUUGAAGGU AUGG(UAAA) AC-AUACUGA AGGAUCGAAC C-AGUUAAU( 1381 -GUUGCAAC) AUUAU|UGG- AUGAG-UUGU GAUUAGGGGU (-GAAAG)GC CAAUCgggcu 1441 a--------- ---------- ---------- (-----)gag cggc|cgcuc u------aG| 1501 -CCC|UGUUG G|GGGUAG|A GC-ACUGG-A UAGACUA-GG |-GGGAU(uc auc)AUCUUA 1561 CCAAAUCUAA -CCAAACUCC GAA-UA-|CC A-A-U-A-au uaau----u| aua-CAGCAG 1621 ACACAC--UA U-GGGU(GCU AA-)GUCCGU -GGUG-GAAA GGG(-AAACA G-)CCCAGAU 1681 CACUAUCUAA G-GU|CCCA- AAAUU-ACAG -C-UAA-GUG ------GGAA AGGAAGUA-G 1741 AAAAACCAU- UACAGCUAGG AGGUUGGC(U UGGAAGCA)G CCAU-CCU|U (UAA)A|CAA 1801 AGC(GUAACA )GC|UCACUU GUcuaaaUAA GU-UUU-UC- -UGC|GCCGA AAAU-GUAC- 1861 CGGGGCUAAA GCUGU-A|U| ACCGAAGG-| GUGG|gugcu uauugau(uu cg-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)-auu aauaggugc- GG-UNG---G A|----gC-U 2221 U-CCG-UAa- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-UCUG-U 2341 GAAGGUG-G- U-UU(-GUAA -)AAA--CUG CUGG|AGAUA U-CGGAAGUG AGAAUNC-UG 2401 AC|AUA-AGU A--GCGUAAA AGAGUG(UGA AAAA)CACUC U|CACC-AAA AAUCUAANNN 2461 NNCCCA-CGU UAAG-(UUAA U)CU|A-CGU AGGGUUAGU| CGG|U-UCCU AAGGCGAGUC 2521 C(GUAA)aG- GAGU-AGUCG AUGG-CAAUU AGG-(UU-AA UAUU)C-CUA A|AC|cu-c- 2581 uu-aag-u-- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- g--uga-cgg gu--uuugu- auuu-g-|ua uaggu(cuga 2761 uuggau-ug- --)aucuaug -|-------- ---------- ---------- ---------- 2821 ---------- ----(----- ---)--|--- ---------- ---------- ---------- 2881 --------|- ---|------ ---------- -(-------) ---------- ---------- 2941 ---cuua-aa agaa-----| gcuggaggaa a-uagnacuu a--------- -------u-a 3001 uuuau---ga g|g|CUGUAC CGUAAACC(G ACACU)GG|U GG-AUGAGU- A-(GAGUA)U 3061 ACUAAGGUG- ||UUGAAAGA AUGAUGUUG- ---------- ----AAGGAA CUCGGNAAAU 3121 UAUACCUGUA AC(-UUCG)G AAGAAGGGUA |accu----- -gcu------ ------uuua 3181 g(-gcaa-)c uaua------ ------agu- ----agg-U| G(GCA)CAAA AUAGGGA-GU 3241 AG|CGACU-- ---GU(UUAC UAAAA)ACAC AGGACUCUG| CAAACAC(GU AA------)G 3301 UGGAAGU-AU AGGGUCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAUA GGAGGG---- 3361 GU-------- (G-CAA)--- --------GC ------UCUG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|-GCC GU(AACACUG )ACGGCC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AUGGCGUAAC GA-UUUCUCC ACUGUCUCCA ACAUCACUUC 3541 A|GCGAAAUU |GAAUUCC-C CG(UGCAGAU G)CGGG-ua- ccggccu-uA GACGAAGAGA 3601 CCCCGUGC|A CCU-UUACUA U|AGCUUUAC AUU|GCUAUU AAAAGUGUGA UGUGCAGGAU 3661 AGGUGGGAGA CUUUGAAG-- UUAUGGC(GC UC)AUGAUAA UGGAGUUAAC -C-UUGAGAU 3721 ACCACC|CUU U-ACACUUUU GAU-AUCUAA -CUAUGU--- -UUCA(--UU -AUC)-UGGA 3781 ACUAG-GACA UUGUAUGGUG GG-UAGUUUG ACUG(G--)C GGUC|GCCUC C(UAA-AAAG 3841 UAAC)GGAGG C|G|U|GCGA AGGUAAGC|U AGAGCUGG(U CGGAAA)UCA GCUUGA-UA| 3901 GU(A|CAAUG )GCAUAAGCU UGCCUGACUG CGAGGC(UGA CAA)GCCAAG CAGAGAC(GA 3961 AA)GU-CGGU |CAUAGUGAU CCGGUAAUUC UG(UAUGGA) AGG|GUUAUC GCUCAAC|GG 4021 AUAAAAGGUA CGC|CGGG|G AUAACAG|GC UGA--UGGUG UUCGAGA(G- UUC-AUA)UC 4081 GACGACA-CC GU-UUGGCAC CUCGAUGUC| GACU|C|AUC AC|AUCC|UG GGGCU(GGAG 4141 A---A)-GGU CCCAAGGGU| UC--U(UGUU C)GC-CGAUU AAAGUGUUAC G-UGAGUUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-UUCUAU -CU|GCCGUG G-G|UG-AAG 4261 GAAAUUU|GA -|GAAGAUC- cgucgaccca gaucugaCUC (UAGUAC(GA GA)GGACC)G 4321 AGAUGU|AUA UACCUCUGGU GUACCAGC|U GUUAU(GC-C A-)AUAGCA- UCGCUGGGUA 4381 GCU-AUGUAU AGAUGGGAUA AUUGCU(GAA ACGUA-UA)A GCAAGAAACC CUCUUC|AAA 4441 A--AAAUUUC C|CA|----- -(------)- -------au- uaag|-GC|C GUGG-(GAGA 4501 CU-A)CCACG -UUGAUAG|G CUAG|GUGUA -GAAGCAUG- -(GUAA-)-- CAUGU|GA-A 4561 GCUA|A|CUG GUACUAAUn- nnnnnnnnn| nnnnnn-nnn n-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS P.denitrif 4759 bp RNA RNA 03-JUL-1997 DEFINITION Paracoccus denitrificans.; 23S ribosomal RNA; 23S rRNA gene. ACCESSION X87287 KEYWORDS 23S ribosomal RNA; 23S rRNA gene. SOURCE Paracoccus denitrificans. ORGANISM Paracoccus denitrificans. REFERENCE 1 (bases 1 to 2847) AUTHORS ., Reetz,K., Beimfohr,C., Brockmann,E., Kirchhof,G., Dorn,S., Bachleitner,M., Klugbauer,N., Springer,N., Lane,D., Nietupsky ,R., Weizenegger,M. and Schleifer,K.H. Ludwig,W., Rossello-Mora,R., Aznar,R., Klugbauer,S., Spring,S TITLE proteobacteria Comparative sequence analysis of 23S rRNA from JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2847) AUTHORS Ludwig,W. TITLE Direct Submission JOURNAL Submitted (18-MAY-1995) W. Ludwig, Lehrstuhl fuer Mikrobiologie, Technische Universitaet Muenchen, Muenchen, FRG STANDARD No information REFERENCE 3 (bases 1 to 2847) AUTHORS Ludwig,W., Rossello-Mora,R., Aznar,R., Klugbauer,S., Spring,S., Reetz,K., Beimfohr,C., Brockmann,E., Kirchhof,G. , Dorn,S., Bachleitner,M., Klugbauer,N., Springer,N., Lane, D., Nietupsky,R., Weizenegger,M. and Schleifer,K.H. TITLE Comparative sequence analysis of 23S rRNA from proteobacteria JOURNAL Syst. Appl. Microbiol. 18, 164-188 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X87287 BASE COUNT 731 a 674 c 883 g 559 t 1912 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- ----gaucAA UCAAGCGCG- A-UAAGGGCG UUUGGUGGAU 121 G|CCUUGG|C AGCAAG|AG| GC-GAUGAAG GA|CGUG(AU AC-UC-)U|- GCG-AUAAGC 181 CAUGGG|-GA GCU(G-AG-A AUA-)AGCUU UG-AUC-CAU GGAUC|UCCG AAUGGG(GAA 241 A)CCC|ACCU G---(aaacu cgauuguugu uacc------ ---------- ---------- 301 ---------- ---------- ----(cuug) gguaucaaca auuggguuaa c--------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --------)- --CAGGU-AC UUAUCACCU( 481 GA-AUACA-- UA)GGG-UUU UA-A--GAG- C-GAAC|CC- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCG GAGGAAAGGA AAUC(-AACA --)GAUAC|U CC-CCCAGUA GU(GGCGA)G 601 CGA-ACG-GG GA-CCA-GCC G--------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ------agcc gugagaauga ccaGAAu-gg c-c(u-ggaa a)g-gccagc 781 |c(aua)gcG GG(UGACAGC )CCCGU-Aug g-gaaguuug aucggacgc- ---------- 841 ---------- ---------- -----auuAA GUAGGGCGGG A(CACGUG-A AA)UCCUGUC 901 UGAAGAU-CG G-GG(GACCA C)CC-UCG-A AGGCUAA--- -GUACUCCUU GCUGACCGAU 961 AGCG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GAC GA-)GGGGA- 1021 -GUGAAA-CA GUUUCUGAAA CCGG-ACGCC UACAA-G-CA GUCGGAGGGG --C------- 1081 --------(- --cuugc--) ---------- -----G-CCC UGACGGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAACGAC UUGG-UCUA- UCUAGC-AAG CUUAAGCC-( -G-UUA)-GG 1201 U-GUAGGCGC AGC(GAAA-) GCGAGUCU(U AA-AA)GGGC GC-------- ---------- 1261 ---------- ------auga G-UUAGAUGG AUCA-GACCC GAAAC-CAG- AUGA-UCUAG 1321 GCAUGAG|CA GGCUGAAGGU UGGG(UAAC) AC-CAACUGG AGGGCCGAAC C-CACACCU( 1381 -GUUGAAAA) AGGUC|GGG- AUGAC-UUGU GCCUAGGGGU (-GAAAG)GC CAAUCAAAUC 1441 UGGAGAUAGC UGGUUCUCCG CGAAAGCUAU (-UUAG)GUA GCGC|-GUCA GACGA---A| 1501 -UUC|UCCCG G|GGGUAG|A GC-ACUGC-A UGGAUGA-UG |-GGGGC(cc aca)GCCUUA 1561 CUGAGUCUAA -GCAAACUCC GAA-UA-|CC G-G-G-A--A GAAC----U| AUC-UGGCAG 1621 ACACAC--GG C-GGGU(GCU AAC)GUCCGU -CGUG-GAGA GGG(-AAACA A-)CCCUGAC 1681 CAACAGCUAA G-GC|CCCC- AAUUC-GUGG -C-UAA-GUG ------GGAA AGCAUGUG-G 1741 GACUUCCAA- AACAACCAGG AGGUUGGC(U UAGAAGCA)G CCAU-CCU|U (UAA)A|GAU 1801 AGC(GUAACA )GC|UCACUG GUcuaguCAA GA-GGU-CU- -UGC|GGCGA AGAU-GUAA- 1861 CGGGGCUCAA GCCAC-G|A| GCCGAAGCU| UUGG|gugug ca-----(uu ua-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --ugcacgc- GG-UAGCGGA G|-----CGU 2221 U-CCG-UGAu auaacgccau ccgacu---- ---------- -------uca gcuuucc(cu 2281 ugggaaagcc uu-------- ---------- -------ggu cggacaggcg uuU-ACUG-U 2341 GAAGCCG-G- G-CC(-GUAA -)GGCauCCG GUGG|AGUGA U-CGGAAGCG AGAAUGU-UG 2401 AC|AUG-AGU A--GCGACAA ACAGGG(UGA GAGA)CCCUG U|CGCC-GAA AGUCCAAGGG 2461 UUCCUG-CUU AAAG-(CUAA U)CU|G-AGC AGGGUAAGC| CGG|C-CCCU AAGGCGAGGC 2521 C(GAAA)-G- GCGU-AGUCG AUGG-GAACC AGG-(UU-AA UAUU)C-CUG G|GC|ca-g- 2581 ga-gau---- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------g g--uga-cgg au--cgcagg ugua-g-|uu c-cuc(cuua 2761 ucggau-ug- --)ga-gggg -|-------- ---------- ---------- ---------- 2821 ---------- ----(----- ---)--|--- ---------- ---------- ---------- 2881 --------|- ---|------ ---------- -(-------) ---------- ---------- 2941 ---cugc-ug agcg-----| guuccuggaa a-ua------ ---------- -----gc--c 3001 cuccac--aa g|A|CCGUAC CCUAAACC(G ACACA)GG|U GG-ACUGGU- A-(GAGAA)U 3061 ACCAAGGCGC ||UUGAGAGA ACCACAUUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UACCUCCGUA AG(-UUCG)C GAGAAGGAGG |CCCC----- -guu------ ------ggca 3181 g(-gcaa-)c uguc------ -------gg- ---cgGG-G| G(GCA)CAAA CCAGGGG-GU 3241 GG|CGACU-- ---GU(UUAC UAAAA)ACAC AGGGCUCUG| CGAAGCC(GU AA------)G 3301 GCGACGU-AU AGGGUCUGA- CGCCUGCCCG GU|GCCG-GA A-GGUUAAAA GGAGAG---- 3361 GU-------- (G-CAA)--- --------GC ------CUUG AAUUGAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-CUUCCCC GCUGUCUCAA AUGUGGACUC 3541 A|GCGAAAUU |GAAUUGU-C UG(UGAAGAU G)CAGACUUC CCGCGGU-UA GACGGAAAGA 3601 CCCCAUGC|A CCU-UUACUA U|AGCUUCGC ACU|GGCAUC AGGAUUGCGA UGUGCAGGAU 3661 AGGUGGUAGG CAUCGAAG-- CGGGGAC(GC CA)GUUCCCG UGGAGCCAUC -C-UUGAGAU 3721 ACCACC|CUU C-GCACUCUU GAU-GUCUAA -CCGCGG--- -CCCG(--UU -AUC)-CGGG 3781 UCCGG-GACC CUGCGUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|GCCUC C(CAA-AGAG 3841 UAAC)GGAGG C|G|C|GCGA AGGUUGGC|U CAGAGCGG(U CGGAAA)UCG CUCGUC-GA| 3901 GU(G|CAAUG )GCAGAAGCC AGCCUGACUG CAAGAC(UGA CAA)GUCGAG CAGAGAC(GA 3961 AA)GU-CGGC |CAUAGUGAU CCGGUGGUCC CG(AGUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CGC|UGGG|G AUAACAG|GC UGA--UGAUG CCCAAGA(G- UCC-AUA)UC 4081 GACGGCA-UC GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC UC|AUCC|UG GGGCU(GGAG 4141 C---A)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGAGGUAC G-UGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|UG-UAG 4261 GAUACUU|GA -|GAGGAGU- UGC------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGGUGA|ACG UUCCACUGGU GGACCAGU|U AUCGU(GC-C A-)ACGGUA- GUGCUGGGUA 4381 GCU-AUGAAC GGACAGGAUA AACGCU(GAA GGCAUCUA)A GCGUGAAGCC CCCCUC|AAA 4441 ACAAGGUAUC C|CU|----- -(------)- --------U- GAGA|-GC|C GUGG-(AAGA 4501 CC-A)CCACG -UCGAUAG|G CCGG|AGAUG -UAAGCGCA- -(GCAA-)-- UGCGU|UC-A 4561 GUUG|A|CCG GUACUAAUC- GCUCGAuaG| GCUUGA-UUU Gauccgg-|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS R.capsulat 4759 bp RNA RNA 18-JAN-1988 DEFINITION Rhodobacter capsulatus. ACCESSION No information KEYWORDS No information. SOURCE Rhodobacter capsulatus. ORGANISM Rhodobacter capsulatus. REFERENCE 1 (bases 1 to 2847) AUTHORS No information JOURNAL R.capsulatus:who:Robin Gutell STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X06485 Phylo:Eubacteria,Purple,alpha,3 BASE COUNT 737 a 679 c 893 g 575 t 1875 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------AA UCAAGCGCG- A-GAAGGGCG UUUGGUGGAU 121 G|CCUUGG|C AGCAAG|AG| GC-GAUGAAG GA|CGUG(AU AC-UC-)U|- GCG-AUAAGU 181 CAUGGG|-GA GCU(G-AG-A AUA-)AGCUU UG-AUC-CAU GAAUU|UCCG AAUGGG(GAA 241 A)CCC|ACCU G---(agacc uuauuguugu ucu------- ---------- ---------- 301 -ucgcaacgg accuccgcgc cggc(ucaau ---------- ---------- ---------- 361 ---------- ---------- ---------- ---)gccgg- ---------- ------agcg 421 cugcgccgca cugcgagaca gucaacagua ggguuaaa)- --CAGGU-AC UUUACUCCU( 481 GA-AUACA-- UA)GGG-GGU -UUA--GAG- C-GAAC|CC- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCG GAGGAAAGGA AAUC(-AAC- --)GAUAC|U CC-GUUAGUA GU(GGCGA)G 601 CGA-ACG-CG GA-CCA-GCC G--------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ------agcc gugagaacga gugGAAu-gg u-c(u-ggaa a)g-gccagc 781 |g(aua)u-G GG(UGACAGC )CCCGU-Aca c-gaaguuug aucggacgc- ---------- 841 ---------- ---------- -----auuAA GUAGGGCGGG A(CACGUG-U AA)UCCUGUC 901 UGAAGAU-CG G-GG(GACCA C)CC-UCG-A AGGCUAA--- -GUACUCCUU GCUGACCGAU 961 AGCG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GAC GA-)GGGGA- 1021 -GUGAAA-CA GUUUCUGAAA CCGG-ACGCC UACAA-G-CA GUCGGAGCUU --C------- 1081 --------(- --cuuga--) ---------- -----G-AAG UGACGGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAACGAC UUGG-UCUU- ACGAGC-AAG CUUAAGCC-( -G-AUA)-GG 1201 U-GUAGGCGC AGC(GAAA-) GCGAGUCU(U AA-AA)GGGC Ga-------- ---------- 1261 ---------- ------c-ga G-UUCGUGGG AUCA-GACCC GAAAC-CAG- AUGA-UCUAG 1321 CCAUGUC|CA GGAUGAAGGU UGGG(UAAC) AC-CAACUGG AGGUCCGAAC C-GACACCC( 1381 -GUUGAAAA) GGGUC|CGG- AUGAG-AUGU GGCUAGGGGU (-GAAAG)GC CAAUCAAAUC 1441 UGGAGAUAGC UGGUUCUCCG CGAAAGCUAU (-UUAG)GUA GCGC|-CUCG GACGA---A| 1501 -UAC|CUGCG G|GGGUAG|A GC-ACUAC-A UGGAUGA-UG |-GGGGC(cc aca)GCCUUA 1561 CUGAGUCUAA -GUAAACUCC GAA-UA-|CC G-C-A-G--A GUAC----U| AUC-CGGGAG 1621 ACACAC--GG C-GGGU(GCU AAC)GUCCGU -CGUG-AAGA GGG(-AAACA A-)CCCUGAC 1681 CAACAGCUAA G-GC|CCCC- AAUUC-GUGG -C-UAA-GUG ------GGAA AGCAUGUG-G 1741 GAUUUCCAA- AACAACCAGG AGGUUGGC(U UAGAAGCA)G CCAU-CCU|U (UAA)A|GAU 1801 AGC(GUAACA )GC|UCACUG GUcuaguCAA GA-GAU-CC- -UGC|GGCGA AGAU-GUAA- 1861 CGGGGCUCAA GCCAC-G|A| GCCGAAGCU| UUGG|augug ca-----(ga aa-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --ugcacgu- GG-UAGCGGA G|-----CGU 2221 U-CUG-UGAu auagcaccgc ccgacu---- ---------- -------uua gcucucc(uu 2281 cgggaaagcc uu-------- ---------- -------ggu cggacaggug cuG-ACUG-U 2341 GAAGCCG-G- C-CU(-GUGA -)GGGauCCG GUGG|AGUGA U-CAGAAGCG AGAAUGU-UG 2401 AC|AUG-AGU A--GCGAUAA AGAGGG(UGA GAGA)CCCUC U|CGCC-GAA AGUCCAAGGG 2461 UUCCUG-CUU AAAG-(CUAA U)CU|G-AGC AGGGUAAGC| CGG|C-CCCU AAGGCGAGGC 2521 C(GAAA)-G- GCGU-AGUCG AUGG-GAACC ACG-(UU-AA UAUU)C-GUG G|GC|ca-g- 2581 ga-gga-u-- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- g--uga-cgg au--gcucac uguu-g-|uu c-gac(cuua 2761 ucggau-ug- --)gu-cggg -|-------- ---------- ---------- ---------- 2821 ---------- ----(----- ---)--|--- ---------- ---------- ---------- 2881 --------|- ---|------ ---------- -(-------) ---------- ---------- 2941 ---cagc-ug cggu-----| gucccaggaa a-ua------ ---------- -----gc--c 3001 cuccau--au g|A|CCGUAC CCUAAACC(G ACACA)GG|U GG-ACAGGU- A-(GAGUA)U 3061 ACCAAGGCGC ||UUGAGAGA ACCACGUUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGCCUCCGUA AG(-UUCG)C GAGAAGGAGG |CCCC----- -auu------ ------cgca 3181 c(-gcaa-)g ugug------ ------ggu- ---ggGG-G| G(GCA)CAAA CUAGGGG-GU 3241 GG|CGACU-- ---GU(UUAC UUAAA)ACAC AGGGCUCUG| CGAAGCC(GU AA------)G 3301 GCGACGU-AU AGGGUCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAAA GGAGGG---- 3361 GU-------- (G-CAA)--- --------GC ------UCCG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-UCUCCCC GCUGUCUCAA ACGUGGACUC 3541 A|GCGAAAUU |GAACUGU-G UG(UCAAGAU G)CACACUAC CCGCGGU-UA GACGGAAAGA 3601 CCCCAUGA|A CCU-UUACUC C|AGCUUUGC ACU|GGCAUC AGGAUUGUGA UGUGCAGGAU 3661 AGGUGGUAGC CUUUGAAA-- CCGUGAC(GC CA)GUUGCGG UGGAGGCUCC -C-UUGAGAU 3721 ACCACC|CUU C-GCACUCUU GAU-GUCUAA -CCGCGG--- -UCCG(--UC -AUC)-CGGA 3781 UCCGG-GACC CUGCAUGGUG GG-GAGUUUG ACUG(GGG)C GGUC|GCCUC C(CAA-AUCG 3841 UAAC)GGAGG C|G|C|GCGA AGGUAGGC|U CAGACCGG(U CGGAAA)UCG GUCGUU-GA| 3901 GU(G|CAAUG )GCAAAAGCC UGCCUGACUG CAAGAC(UGA CAA)GUCGAG CAGAGAC(GA 3961 AA)GU-CGGU |CAUAGUGAU CCGGUGGUCC CA(AGUGGG) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|UGGG|G AUAACAG|GC UGA--UGAUG CCCAAGA(G- UCC-AUA)UC 4081 GACGGCA-UC GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC UC|AUCC|UG GGGCU(GGAG 4141 C---A)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGAGGUAC G-UGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|UG-UAG 4261 GAUACUU|GA -|GAGGAGU- UGC------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGGUGA|ACG UUCCACUGGU GGACCAGU|U AUCGU(GC-C A-)ACGGUA- GUGCUGGGUA 4381 GCU-AUGAAC GGACAGGAUA AACGCU(GAA GGCAUCUA)A GCGUGAAGCC CCCCUC|AAA 4441 ACCAGGUAUC C|CU|----- -(------)- --------U- GAGG|-GC|C GUGG-(AAGA 4501 CC-A)CCACG -UCGAUAG|G CCGG|AGAUG -UAAGUGCA- -(GCAA-)-- UGCAU|UC-A 4561 GUUG|A|CCG GUACUAAUU- GCCCGAuuG| GCUUGA-UUU G-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS R.sphaer.A 4759 bp RNA RNA 11-JAN-191 DEFINITION Rhodobacter sphaeroides subsp. operon A. ACCESSION No information KEYWORDS No information. SOURCE Rhodobacter sphaeroides subsp. operon A. ORGANISM Rhodobacter sphaeroides. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X53853 ID RRNADONE PRELIMINARY; DNA; 6442 BP. DE OPERON RRNA FROM RHODOBACTER SPHAEROIDES 2.4.1 DE SYLVIA C. DRYDEN AND SAMUEL KAPLAN SQ SEQUENCE 6442 BP; 1504 A; 1625 C; 2040 G; 1273 T; BASE COUNT 739 a 699 c 909 g 536 t 1876 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- ---------A UCAAGCGCG- A-AAAGGGCG UUUGGUGGAU 121 G|CCUAGG|C AGCAAG|AG| GC-GAUGAAG GA|CGUG(AU AC-CC-)U|- GCG-UUAAGC 181 CAUGGG|-GA GCC(G-GG-A AUG-)GGCUU UG-AUC-CAU GGAUG|UCCG AAUGGG(GAA 241 A)CCC|ACCU G---(acauu cugcuauugu ---------- ---------- ---------- 301 ---------- ---------u aucc(aac-- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---)ggaua- ---------- ---------- 421 ---------- ---------- -ucgauagug gggugaga)- --CAGGU-AU CUUAACCCU( 481 GA-AUACA-- UA)GGG-GUU -UUG--AAG- C-GAAC|CC- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCG GAGGAAAGGA AAUC(-AACA --)GAGAC|U CC-GCUAGUA GU(GGCGA)G 601 CGA-ACG-CG GA-CCA-GCC G--------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- -----aucuc cgaagaguga cugGAAu-gg c-c(u-ggaa a)g-gccagc 781 |c(aca)gcG GG(UGACAGC )CCCGU-Aca g-gaagcuc- caggagacau ---------- 841 ---------- ---------- -----aucAA GUAGGGCGGG A(CACGUG-A AA)UCCUGUC 901 UGAAGAU-CG G-GG(GACCA C)CC-CCG-A AGGCUAA--- -GUACUCCUU GCUGACCGAU 961 AGCG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GAC GA-)GGGGA- 1021 -GUGAAA-CA GUACCUGAAA CCGG-ACGCC UACAA-G-CA GUCGGAGGGU --C------- 1081 --------(- --cauga--) ---------- -----G-ACC UGACGGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAACGAC UUGG-UCUC- ACGAGC-AAG CUUAAGCC-( -G-GUA)-GG 1201 U-GGAGGCGC AGC(GAAA-) GCGAGUCU(U AA-AA)GGGC GU-------- ---------- 1261 ---------- ------C-GA G-UUCGUGGG AUCA-GACCC GAAAC-CAG- GUGA-UCUAG 1321 CCAUGAG|CA GGAUGAAGUC AGGG(UAAC) AC-CUGAUGG AGGUCCGAAC C-AACACCC( 1381 -GUUGAAAA) GGGUC|UGG- AUGAC-UUGU GGCUAGGGGU (-GAAAG)GC CAAUCAAACC 1441 UGGAGAUAGC UGGUUCUCCG CGAAAGCUAU (-UUAG)GUA GCGC|-CUCG GACGA---A| 1501 -UAC|CUCGG G|GGGUAG|A GC-ACUGC-A UGGAUGA-UG |-GGGGC(cc aca)GCCUUA 1561 CUGAGUCUAA -GCAAACUCC GAA-UA-|CC C-G-A-G--A GUAC----U| AUC-CGGGAG 1621 ACACAC--GG C-GGGU(GCU AAC)GUCCGU -CGUG-AAGA GGG(-AAACA A-)CCCUGAC 1681 CUGCAGCUAA G-GC|CCCC- AAUUC-GUGG -C-UAA-GUG ------GGAA AGCAUGUG-G 1741 GACGGCCAA- AACAACCAGG AGGUUGGC(U UAGAAGCA)G CCAU-CCU|U (UAA)A|GAU 1801 AGC(GUAACA )GC|UCACUG GUcuagaUAA GC-UGU-CC- -UGC|GGCGA AGAU-GUAA- 1861 CGGGGCUCAA GCCAC-G|A| GCCGAAGCU| CAGG|augca ca-----(gc aa-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --ugugcgu- GG-UAGCGGA G|-----CGU 2221 U-CCG-UGAu auagcucauu guguguuuau cgaacgcacc accgguccga acgagggc(a 2281 cugcccucaa guagcgaagc gguagggcgc gcgguagcgc acacaaagag cUU-UCUG-U 2341 GAAGCCG-G- G-CC(-GUAA -)GGCauCCG GUGG|AGAGA U-CGGAAGCG AGAAUGU-UG 2401 AC|AUG-AGU A--GCGACAA ACAGGG(UGA GAGA)CCCUG U|CGCC-GAA AGUCCAAGGG 2461 UUCCUG-CUU AAAG-(CUAA U)CU|G-AGC AGGGUAAGC| CGG|C-CCCU AAGGCGAGGC 2521 C(GAAA)-G- GCGU-AGUCG AUGG-GAACC AGG-(UU-AA UAUU)C-CUG G|GC|ca-g- 2581 ga-gga-u-- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- g--uga-cgg au--cgcagg ugua-g-|uu c-ggu(cuua 2761 ucggau-ug- --)ac-cggg -|-------- ---------- ---------- ---------- 2821 ---------- ----(----- ---)--|--- ---------- ---------- ---------- 2881 --------|- ---|------ ---------- -(-------) ---------- ---------- 2941 ---cugc-ug agcg-----| gucccuggaa a-ua------ ---------- -----gc--c 3001 cuccau--ca g|a|CCGUAC CCCAAACC(G ACACA)GG|U GG-ACUGGU- A-(GAGAA)U 3061 ACCAAGGCGC ||UUGAGAGA ACCACAUCA- ---------- ----AAGGAA CUCGGCAAAA 3121 UGCCUCCGUA AG(-UUCG)C GAGAAGGAGG |CCCC----- -guc------ ------ugua 3181 g(-gcaa-)c uaug------ ------ggc- ----gGG-G| G(GCA)CAAA CCAGGGG-GU 3241 GG|CGACU-- ---GU(UUAC UUAAA)ACAC AGGGCUGUG| CGAAGCC(GC AA------)G 3301 GCGACGU-AU ACAGUCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAAA GGAGGA---- 3361 GU-------- (G-CAA)--- --------GC ------UCCG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-UCUCCCC GCUGUCUCUG AUGUGGACUC 3541 A|GCGAAAUU |GAACUGU-G UG(UCAAGAU G)CACACUUC CCGCGGU-UA GACGGAAAGA 3601 CCCCAUGA|A CCU-UUACUA U|AGCUUCGC ACU|GGCAUC AGGAUUGUGA UGUGCAGGAU 3661 AGGUGGUAGG CAUCGAAG-- CGGGGAC(GC CA)GUUCCCG UGGAGCCAAC -C-UUGAGAU 3721 ACCACC|CUU C-GCCAUCUU GAU-GUCUAA -CCGCGG--- -CCCG(--UU -AUC)-CGGG 3781 UCCGG-GACC CUGCGUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|GCCUC C(CAA-ACAG 3841 UAAC)GGAGG C|G|C|GCGA UGGUGGGC|U CAGACCGG(U CGGAAA)UCG GUCGUC-GA| 3901 GU(G|CAAUG )GCAGAAGCC CGCCUGACUG CAAGAC(UGA CAA)GUCGAG CAGAGAC(GA 3961 AA)GU-CGGC |CAUAGUGAU CCGGUGGUCC CG(AGUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|UGGG|G AUAACAG|GC UGA--UGAUG CCCAAGA(G- UCC-AUA)UC 4081 GACGGCA-UC GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC UC|AUCC|UG GGGCU(GGAG 4141 C---A)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGAGGUAC G-UGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|UG-UAG 4261 GAGACUU|GA -|GAAGAGU- UGC------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGGUGA|ACG AUCCACUGGU GGACCAGU|U GUCGU(GC-C A-)ACGGCA- GUGCUGGGUA 4381 GCU-AUGAUC GGACAGGAUA ACCGCU(GAA GGCAUCUA)A GCGGGAAGCC CCCUUC|AAA 4441 ACAAGGUCUC C|CU|----- -(------)- --------U- GAGG|-GC|C GUGG-(AAGA 4501 CC-A)CCACG -UCGAUAG|G CCAG|AGGUG -UAAGCGCA- -(GCAA-)-- UGCGU|UC-A 4561 GCUG|A|CUG GUACUAAUU- GCCCGAUAG| GCUUGA-UCU G-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS R.sphaer.B 4759 bp RNA RNA 11-JAN-191 DEFINITION Rhodobacter sphaeroides subsp. operon B. ACCESSION No information KEYWORDS No information. SOURCE Rhodobacter sphaeroides subsp. operon B. ORGANISM Rhodobacter sphaeroides. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X53854 ID RRNBDONE PRELIMINARY; DNA; 6565 BP. DE OPERON RRNB FROM RHODOBACTER SPHAEROIDES 2.4.1 DE SYLVIA C. DRYDEN AND SAMUEL KAPLAN SQ SEQUENCE 6565 BP; 1561 A; 1687 C; 2058 G; 1259 T; BASE COUNT 738 a 699 c 907 g 536 t 1879 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- ---------A UCAAGCGCG- A-AAAGGGCG UUUGGUGGAU 121 G|CCUAGG|C AGCAAG|AG| GC-GAUGAAG GA|CGUG(AU AC-CC-)U|- GCG-UUAAGC 181 CAUGGG|-GA GCC(G-GG-A AUG-)GGCUU UG-AUC-CAU GGAUG|UCCG AAUGGG(GAA 241 A)CCC|ACCU G---(acauu cugcuauugu ---------- ---------- ---------- 301 ---------- ---------u aucc(aac-- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---)ggaua- ---------- ---------- 421 ---------- ---------- -ucgauagug gggugaga)- --CAGGU-AU CUUAACCCU( 481 GA-AUACA-- UA)GGG-GUU -UUG--AAG- C-GAAC|CC- GGG-AACU|G A(AACA)UCU 541 AAGUA-CCCG GAGGAAAGGA AAUC(-AACA --)GAGAC|U CC-GCUAGUA GU(GGCGA)G 601 CGA-ACG-CG GA-CCA-GCC G--------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- -----aucuc cgaagaguga cugGAAu-gg c-c(u-ggaa a)g-gccagc 781 |c(aca)gcG GG(UGACAGC )CCCGU-Aca g-gaagcuc- caggagacau ---------- 841 ---------- ---------- -----aucAA GUAGGGCGGG A(CACGUG-A AA)UCCUGUC 901 UGAAGAU-CG G-GG(GACCA C)CC-CCG-A AGGCUAA--- -GUACUCCUU GCUGACCGAU 961 AGCG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GAC GA-)GGGGA- 1021 -GUGAAA-CA GUACCUGAAA CCGG-ACGCC UACAA-G-CA GUCGGAGGGU --C------- 1081 --------(- --cauga--) ---------- -----G-ACC UGACGGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAACGAC UUGG-UCUC- ACGAGC-AAG CUUAAGCC-( -G-GUA)-GG 1201 U-GGAGGCGC AGC(GAAA-) GCGAGUCU(U AA-AA)GG-C GU-------- ---------- 1261 ---------- ------C-GA G-UUCGUGGG AUCA-GACCC GAAAC-CAG- GUGA-UCUAG 1321 CCAUGAG|CA GGAUGAAGUC AGGG(UAAC) AC-CUGAUGG AGGUCCGAAC C-AACACCC( 1381 -GUUGAAAA) GGGUC|UGG- AUGAC-UUGU GGCUAGGGGU (-GAAAG)GC CAAUCAAACC 1441 UGGAGAUAGC UGGUUCUCCG CGAAAGCUAU (-UUAG)GUA GCGC|-CUCG GACGA---A| 1501 -UAC|CUCGG G|GGGUAG|A GC-ACUGC-A UGGAUGA-UG |-GGGGC(cc aca)GCCUUA 1561 CUGAGUCUAA -GCAAACUCC GAA-UA-|CC C-G-A-G--A GUAC----U| AUC-CGGGAG 1621 ACACAC--GG C-GGGU(GCU AAC)GUCCGU -CGUG-AAGA GGG(-AAACA A-)CCCUGAC 1681 CUGCAGCUAA G-GC|CCCC- AAUUC-GUGG -C-UAA-GUG ------GGAA AGCAUGUG-G 1741 GACGGCCAA- AACAACCAGG AGGUUGGC(U UAGAAGCA)G CCAU-CCU|U (UAA)A|GAU 1801 AGC(GUAACA )GC|UCACUG GUcuagaUAA GC-UGU-CC- -UGC|GGCGA AGAU-GUAA- 1861 CGGGGCUCAA GCCAC-G|A| GCCGAAGCU| CAGG|augca ca-----(gc aa-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --ugugcgu- GG-UAGCGGA G|-----CGU 2221 U-CCG-UGAu auagcucauu guguguuuau cgaacgcacc accgguccga acgagggc(a 2281 cugcccucaa guagcgaagc gguagggcgc gcgguagcgc acacaaagag cuU-UCUG-U 2341 GAAGCCG-G- G-CC(-GUAA -)GGCauCCG GUGG|AGAGA U-CGGAAGCG AGAAUGU-UG 2401 AC|AUG-AGU A--GCGACAA ACAGGG(UGA GAGA)CCCUG U|CGCC-GAA AGUCCAAGGG 2461 UUCCUG-CUU AAAG-(CUAA U)CU|G-AGC AGGGUAAGC| CGG|C-CCCU AAGGCGAGGC 2521 C(GAAA)-G- GCGU-AGUCG AUGG-GAACC AGG-(UU-AA UAUU)C-CUG G|GC|ca-g- 2581 ga-gga-u-- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- g--uga-cgg au--cgcagg ugua-g-|uu c-ggu(cuua 2761 ucggau-ug- --)ac-cggg -|-------- ---------- ---------- ---------- 2821 ---------- ----(----- ---)--|--- ---------- ---------- ---------- 2881 --------|- ---|------ ---------- -(-------) ---------- ---------- 2941 ---cugc-ug agcg-----| gucccuggaa a-ua------ ---------- -----gc--c 3001 cuccau--ca g|a|CCGUAC CCCAAACC(G ACACA)GG|U GG-ACUGGU- A-(GAGAA)U 3061 ACCAAGGCGC ||UUGAGAGA ACCACAUCA- ---------- ----AAGGAA CUCGGCAAAA 3121 UGCCUCCGUA AG(-UUCG)C GAGAAGGAGG |CCCC----- -guc------ ------ugua 3181 g(-gcaa-)c uaug------ ------ggc- ----gGG-G| G(GCA)CAAA CCAGGGG-GU 3241 GG|CGACU-- ---GU(UUAC UUAAA)ACAC AGGGCUGUG| CGAAGCC(GC AA------)G 3301 GCGACGU-AU ACAGUCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAAA GGAGGA---- 3361 GU-------- (G-CAA)--- --------GC ------UCCG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-UCUCCCC GCUGUCUCUG AUGUGGACUC 3541 A|GCGAAAUU |GAACUGU-G UG(UCAAGAU G)CACACUUC CCGCGGU-UA GACGGAAAGA 3601 CCCCAUGA|A CCU-UUACUA U|AGCUUCGC ACU|GGCAUC AGGAUUGUGA UGUGCAGGAU 3661 AGGUGGUAGG CAUCGAAG-- CGGGGAC(GC CA)GUUCCCG UGGAGCCAAC -C-UUGAGAU 3721 ACCACC|CUU C-GCCAUCUU GAU-GUCUAA -CCGCGG--- -CCCG(--UU -AUC)-CGGG 3781 UCCGG-GACC CUGCGUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|GCCUC C(CAA-ACAG 3841 UAAC)GGAGG C|G|C|GCGA UGGUGGGC|U CAGACCGG(U CGGAAA)UCG GUCGUC-GA| 3901 GU(G|CAAUG )GCAGAAGCC CGCCUGACUG CAAGAC(UGA CAA)GUCGAG CAGAGAC(GA 3961 AA)GU-CGGC |CAUAGUGAU CCGGUGGUCC CG(AGUGGA) AGG|GCCAUC GCUCAAC|GG 4021 -UAAAAGGUA CUC|UGGG|G AUAACAG|GC UGA--UGAUG CCCAAGA(G- UCC-AUA)UC 4081 GACGGCA-UC GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC UC|AUCC|UG GGGCU(GGAG 4141 C---A)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGAGGUAC G-UGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|UG-UAG 4261 GAGACUU|GA -|GAAGAGU- UGC------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGGUGA|ACG AUCCACUGGU GGACCAGU|U GUCGU(GC-C A-)ACGGCA- GUGCUGGGUA 4381 GCU-AUGAUC GGACAGGAUA ACCGCU(GAA GGCAUCUA)A GCGGGAAGCC CCCUUC|AAA 4441 ACAAGGUCUC C|CU|----- -(------)- --------U- GAGG|-GC|C GUGG-(AAGA 4501 CC-A)CCACG -UCGAUAG|G CCAG|AGGUG -UAAGCGCA- -(GCAA-)-- UGCGU|UC-A 4561 GCUG|A|CUG GUACUAAUU- GCCCGAUAG| GCUUGA-UCU G-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS R.sphaer.C 4759 bp RNA RNA 11-JAN-191 DEFINITION Rhodobacter sphaeroides subsp. operon C. ACCESSION No information KEYWORDS No information. SOURCE Rhodobacter sphaeroides subsp. operon C. ORGANISM Rhodobacter sphaeroides. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X53855 ID RRNCDONE PRELIMINARY; DNA; 6163 BP. DE OPERON RRNC FROM RHODOBACTER SPHAEROIDES 2.4.1 DE SYLVIA C. DRYDEN AND SAMUEL KAPLAN SQ SEQUENCE 6163 BP; 1470 A; 1551 C; 1936 G; 1206 T; BASE COUNT 739 a 700 c 908 g 536 t 1876 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- ---------A UCAAGCGCG- A-AAAGGGCG UUUGGUGGAU 121 G|CCUAGG|C AGCAAG|AG| GC-GAUGAAG GA|CGUG(AU AC-CC-)U|- GCG-UUAAGC 181 CAUGGG|-GA GCC(G-GG-A AUG-)GGCUU UG-AUC-CAU GGAUG|UCCG AAUGGG(GAA 241 A)CCC|ACCU G---(acauu cugcuauugu ---------- ---------- ---------- 301 ---------- ---------u aucc(aac-- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---)ggaua- ---------- ---------- 421 ---------- ---------- -ucgauagug gggugaga)- --CAGGU-AU CUUAACCCU( 481 GA-AUACA-- UA)GGG-GUU -UUG--AAG- C-GAAC|CC- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCG GAGGAAAGGA AAUC(-AACA --)GAGAC|U CC-GCUAGUA GU(GGCGA)G 601 CGA-ACG-CG CA-CCA-GCC G--------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- -----aucuc cgaagaguga cugGAAu-gg c-c(u-ggaa a)g-gccagc 781 |c(aca)gcG GG(UGACAGC )CCCGU-Aca g-gaagcuc- caggagacau ---------- 841 ---------- ---------- -----aucAA GUAGGGCGGG A(CACGUG-A AA)UCCUGUC 901 UGAAGAU-CG G-GG(GACCA C)CC-CCG-A AGGCUAA--- -GUACUCCUU GCUGACCGAU 961 AGCG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GAC GA-)GGGGA- 1021 -GUGAAA-CA GUACCUGAAA CCGG-ACGCC UACAA-G-CA GUCGGAGGGU --C------- 1081 --------(- --cauga--) ---------- -----G-ACC UGACGGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAACGAC UUGG-UCUC- ACGAGC-AAG CUUAAGCC-( -G-GUA)-GG 1201 U-GGAGGCGC AGC(GAAA-) GCGAGUCU(U AA-AA)GGGC GU-------- ---------- 1261 ---------- ------C-GA G-UUCGUGGG AUCA-GACCC GAAAC-CAG- GUGA-UCUAG 1321 CCAUGAG|CA GGAUGAAGUC AGGG(UAAC) AC-CUGAUGG AGGUCCGAAC C-AACACCC( 1381 -GUUGAAAA) GGGUC|UGG- AUGAC-UUGU GGCUAGGGGU (-GAAAG)GC CAAUCAAACC 1441 UGGAGAUAGC UGGUUCUCCG CGAAAGCUAU (-UUAG)GUA GCGC|-CUCG GACGA---A| 1501 -UAC|CUCGG G|GGGUAG|A GC-ACUGC-A UGGAUGA-UG |-GGGGC(cc aca)GCCUUA 1561 CUGAGUCUAA -GCAAACUCC GAA-UA-|CC C-G-A-G--A GUAC----U| AUC-CGGGAG 1621 ACACAC--GG C-GGGU(GCU AAC)GUCCGU -CGUG-AAGA GGG(-AAACA A-)CCCUGAC 1681 CUGCAGCUAA G-GC|CCCC- AAUUC-GUGG -C-UAA-GUG ------GGAA AGCAUGUG-G 1741 GACGGCCAA- AACAACCAGG AGGUUGGC(U UAGAAGCA)G CCAU-CCU|U (UAA)A|GAU 1801 AGC(GUAACA )GC|UCACUG GUcuagaUAA GC-UGU-CC- -UGC|GGCGA AGAU-GUAA- 1861 CGGGGCUCAA GCCAC-G|A| GCCGAAGCU| CAGG|augca ca-----(gc aa-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --ugugcgu- GG-UAGCGGA G|-----CGU 2221 U-CCG-UGAu auagcucauu guguguuuau cgaacgcacc accgguccga acgagggc(a 2281 cugcccucaa guagcgaagc gguagggcgc gcgguagcgc acacaaagag cuU-UCUG-U 2341 GAAGCCG-G- G-CC(-GUAA -)GGCauCCG GUGG|AGAGA U-CGGAAGCG AGAAUGU-UG 2401 AC|AUG-AGU A--GCGACAA ACAGGG(UGA GAGA)CCCUG U|CGCC-GAA AGUCCAAGGG 2461 UUCCUG-CUU AAAG-(CUAA U)CU|G-AGC AGGGUAAGC| CGG|C-CCCU AAGGCGAGGC 2521 C(GAAA)-G- GCGU-AGUCG AUGG-GAACC AGG-(UU-AA UAUU)C-CUG G|GC|ca-g- 2581 ga-gga-u-- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- g--uga-cgg au--cgcagg ugua-g-|uu c-ggu(cuua 2761 ucggau-ug- --)ac-cggg -|-------- ---------- ---------- ---------- 2821 ---------- ----(----- ---)--|--- ---------- ---------- ---------- 2881 --------|- ---|------ ---------- -(-------) ---------- ---------- 2941 ---cugc-ug agcg-----| gucccuggaa a-ua------ ---------- -----gc--c 3001 cuccau--ca g|a|CCGUAC CCCAAACC(G ACACA)GG|U GG-ACUGGU- A-(GAGAA)U 3061 ACCAAGGCGC ||UUGAGAGA ACCACAUCA- ---------- ----AAGGAA CUCGGCAAAA 3121 UGCCUCCGUA AG(-UUCG)C GAGAAGGAGG |CCCC----- -guc------ ------ugua 3181 g(-gcaa-)c uaug------ ------ggc- ----gGG-G| G(GCA)CAAA CCAGGGG-GU 3241 GG|CGACU-- ---GU(UUAC UUAAA)ACAC AGGGCUGUG| CGAAGCC(GC AA------)G 3301 GCGACGU-AU ACAGUCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAAA GGAGGA---- 3361 GU-------- (G-CAA)--- --------GC ------UCCG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-UCUCCCC GCUGUCUCUG AUGUGGACUC 3541 A|GCGAAAUU |GAACUGU-G UG(UCAAGAU G)CACACUUC CCGCGGU-UA GACGGAAAGA 3601 CCCCAUGA|A CCU-UUACUA U|AGCUUCGC ACU|GGCAUC AGGAUUGUGA UGUGCAGGAU 3661 AGGUGGUAGG CAUCGAAG-- CGGGGAC(GC CA)GUUCCCG UGGAGCCAAC -C-UUGAGAU 3721 ACCACC|CUU C-GCCAUCUU GAU-GUCUAA -CCGCGG--- -CCCG(--UU -AUC)-CGGG 3781 UCCGG-GACC CUGCGUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|GCCUC C(CAA-ACAG 3841 UAAC)GGAGG C|G|C|GCGA UGGUGGGC|U CAGACCGG(U CGGAAA)UCG GUCGUC-GA| 3901 GU(G|CAAUG )GCAGAAGCC CGCCUGACUG CAAGAC(UGA CAA)GUCGAG CAGAGAC(GA 3961 AA)GU-CGGC |CAUAGUGAU CCGGUGGUCC CG(AGUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|UGGG|G AUAACAG|GC UGA--UGAUG CCCAAGA(G- UCC-AUA)UC 4081 GACGGCA-UC GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC UC|AUCC|UG GGGCU(GGAG 4141 C---A)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGAGGUAC G-UGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|UG-UAG 4261 GAGACUU|GA -|GAAGAGU- UGC------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGGUGA|ACG AUCCACUGGU GGACCAGU|U GUCGU(GC-C A-)ACGGCA- GUGCUGGGUA 4381 GCU-AUGAUC GGACAGGAUA ACCGCU(GAA GGCAUCUA)A GCGGGAAGCC CCCUUC|AAA 4441 ACAAGGUCUC C|CU|----- -(------)- --------U- GAGG|-GC|C GUGG-(AAGA 4501 CC-A)CCACG -UCGAUAG|G CCAG|AGGUG -UAAGCGCA- -(GCAA-)-- UGCGU|UC-A 4561 GCUG|A|CUG GUACUAAUU- GCCCGAUAG| GCUUGA-UCU G-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS Z.mobilis 4759 bp RNA RNA 21-SEP-1998 DEFINITION Zymomonas mobilis.; . ACCESSION AF0867 2 KEYWORDS . SOURCE Zymomonas mobilis. ORGANISM Zymomonas mobilis. REFERENCE 1 (bases 1 to 6250) AUTHORS Lee,J.S., Jin,S.J., Kang,H.L. and Kang,H.S. TITLE ZM4 Molecular organization of the ribosomal RNA transcription unit (rrnA) and the phylogenetic study of Zymomonas mobilis JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 6250) AUTHORS Lee,J.S., Jin,S.J., Kang,H.L. and Kang,H.S. TITLE Direct Submission JOURNAL Submitted (26-AUG-1998) Microbiology, Seoul National University, San56-1 Shilimdong Gwanakgu, Seoul 151-742, Korea STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: AF086792 BASE COUNT 755 a 607 c 836 g 608 t 1953 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ---auggu|g gaaguucucA AGCGUGagg- --UAAGAGCA UUUGGUGGAU 121 G|CCUAGG|C AUACAC|AG| GC-GAUGAAG GA|CGUG(GC AC-GC-)U|- GCG-AUAAGC 181 UACGGC|-GA GAU(G-UG-A GCA-)AUCUU UG-ACC-CGU AGAUU|UCCG AAUGGG(GAA 241 A)CCC|AUCC U---(cacca uuuaauuucg auauugu--- ---------- ---------- 301 ---------- ---------- ----(ucu)g caguaucgga gu-------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------u agguggga)- --AGGAU-AU UAccaaagU( 481 GA-AUACA-- UA)Gcu-uug gu-g--AAG- C-GAAC|CC- GGcGAACU|G A(AACA)UCU 541 AAGUA-CCCG GAGGAAAAGA CAUC(-AACC --)GAGAU|U CC-GUUAGUA GU(GGCGA)G 601 CGA-ACG-CG GA-GUA-GGC C--------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- a-guaccuuu gauugcguua gcaGAAg-uc u-u(u-ggaa a)g-agacac 781 |c(aua)guG GG(UGACAGU )CCCGU-Aug uuaaaacaau auugaaggu- ---------- 841 ---------- ---------- -----cuuGA GUAGGGCGGG G(CACGUG-A AA)CCUUGUC 901 UGAACAU-GG G-GG(GACCA C)CC-UCC-A AGCCUAA--- -AUACUCGUG UAUGACCGAU 961 AGUG-AAC-A AGUACC(GUG A)-GGCA-AA GGUGAAAA-G AACCCC(GAU UA-)GGGGA- 1021 -GUGAAA-CA GUUCCUGAAA CCGA-AUGCU UACAA-G-CA GUAGGAGggu --c------- 1081 --------(- ---uuuaa-) ---------- -----g-gcc uGACUGCGUA CCU(CUU-GC 1141 AU|A)AUGG| -GUCUGUGAC UUAA-UGUA- UCAAGC-AAG CUUAAGCC-( -G-AUA)-GG 1201 U-GUAGGCGC AGC(GAAua) GCGAGUCU(G AA-UA)GGGC Ga-------- ---------- 1261 ---------- ------uuua G-UUUGAUGC AUUA-GACCC GAAAC-CCG- GCGA-UCUAG 1321 GCAUGGU|CA GGAUGAAGGU AAGG(UAAC) AC-UUACUGG AGGUCCGAAC C-GAUUAAC( 1381 -GUUGAAAA) GUUAU|CGG- AUGAA-CUGU GUUUAGGGGU (-GAAAG)GC CAAUCAAGCC 1441 GGGAAAUAGC UGGUUCUCCG CGAAAACUAU (-UGAG)GUA GUGC|-CUCA UGUGA---U| 1501 -GAC|CGUUG G|GGGUAG|A GC-ACUGG-A UGGAUGC-GG |-GGGUU(uc gc-)GACCUA 1561 CCAAAUCUAA -CCAAACUCC GAA-UA-|CC A-A-C-G--A GUUU----A| ACA-UGGGAG 1621 ACAGAC--GG C-GGGU(GCU AAG)GUCCGU -CGUC-GAGA GGG(-AAACA G-)CCCUGAC 1681 CUACAGCUAA G-GU|CCCC- AAGUC-AUGU -C-UAA-GUG ------GGAA AGCUUGUG-A 1741 AGACCCCAA- AACAACCAGG AGGUUGGC(U UAGAAGCA)G CCAU-CCU|U (UAA)A|GAA 1801 AGC(GUAACA )GC|UCACUG GUcuaaaUAA GG-GUC-UU- -UGC|GGCGA AGAU-GUAA- 1861 CGGGGCUCAA GACAU-G|C| ACCGAAGCU| UAGG|auugu uac----(au ua-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -guaacagu- GG-UAGCGGA G|-----CGU 2221 U-CCG-UAa- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCUG-U 2341 GAAGCAG-U- C-UG(-GUAA -)UGG--ACU GUGG|AGGUA U-CGGAAGUG CGAAUGC-AG 2401 AC|AUG-AGU A--GCGAUAA AUAGGG(UGA GAUG)CCCUA U|CGCC-GAA AGUCCAAGGG 2461 UUCCUG-CGC AAGG-(CUAA U)CC|G-CGC AGGGUGAGU| CGG|C-CCCU AAGACGAGCC 2521 C(GAAG)-G- GG-U-AGUCG AUGG-GAAAC AGG-(UU-AA UAUU)C-CUG U|AC|cu-g- 2581 ga-gag-au- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- g--uga-cgg au--cgugua aauu-g-|ua u-guc(cuua 2761 ucggau-ug- --)ga-caug -|-------- ---------- ---------- ---------- 2821 ---------- ----(----- ---)--|--- ---------- ---------- ---------- 2881 --------|- ---|------ ---------- -(-------) ---------- ---------- 2941 ---cuca-ua agcg-----| guuccaggaa a-ua------ ---------- -----gcc-u 3001 cuccau-aua g|A|CCGUAC CCUAAACC(G ACACA)GG|U GG-ACAGGU- A-(GAGUA)U 3061 ACCAAGGCGC ||UUGAGAGA AGGGUGUUG- ---------- ----AAGGAA CUCGGCAAAU 3121 UGCCUCCGUA CC(-UUCG)G AAGAAGGAGG |CCCU----- -uau------ ------uaua 3181 g(-gcaa-)c uau------- ------ucu- ---aagg-G| G(GCA)CAGG CCAGGGG-GU 3241 AG|CGACU-- ---GU(UUAG CAAAA)ACAC AGGGCUCUG| CAAAGUC(GG CUUCAA--)G 3301 ACGACGU-AU AGGGCCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGU GGAGGA---- 3361 GU-------- (G-CAA)--- --------GC ------UCUG AAAUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-CUUCCCC ACUGUCUCCA ACACCUGCUC 3541 A|GCGAAAUU |GAAUUCU-C CG(UGAAGAU G)CGGAGUAC CCGCGGU-UA GACGGAAAGA 3601 CCCCGUGC|A CCU-UUACUG C|AGCUUCAG AGU|GGCAUU AGGAAAGAAC UGUGUAGCAU 3661 AGGUGGGAGG CUUUGAAA-- CUUGAGC(GC CA)GCUUGAG UGGAGCCAUA -G-GUGAAAU 3721 ACCACC|CUG U-UGUUUUCU GAU-GUCUAA -CCUAGA--- -ACCA(-UGA -AAC)-UGGU 3781 UCAGG-GACC CUCUGUGGCG GG-UAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AGAG 3841 UAAC)GGAGG C|G|C|GCGA UGGUUGGC|U CAGGCCGG(U UGGAAA)CCG GCUGCAaGA| 3901 GU(G|CAAUG )GCAUAAGCC AGCCUGACUG UGAGAC(UGA CAA)GUCGAA CAGAGAC(GA 3961 AA)GU-CGGU |CAUAGUGAU CCGGUGGUCC CU(CGUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CGC|CGGG|G AUAACAG|GC UGA--UAACC CCCAAGA(G- CUC-AUA)UC 4081 GACGGGG-UU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GGAG 4141 C---A)-GGU CCCAAGGGU| UUGGC(UGUU C)GC-CAAUU AAAGUGGUAC G-UGAGCUGG 4201 GUUCA-GAAC |GUC(GCGA) -GACAGUU-U GGU-CCCUAU -CU|GCCGUG G-G|CG-U-C 4261 GAUAUUU|GA -|GAGGAGU- UGC------- -------CCU (UAGUAC(GA AA)GGACC)G 4321 GGGUGA|ACA UGCCUCUGGU GGACCUGU|C GUGGC(GC-C A-)GCCGCG- CAGCAGGGUA 4381 GCU-AUGCAU GGACGGGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAGCC UCCCUC|AAG 4441 AUAAGAUAUC -|uc|----- -(------)- ---------- -AGA|-GC|C GUCG-(AAGA 4501 CU-A)CGACG -UUGAUAG|G CCAG|AUGUG -GAAGUGUG- -(GUAA-)-- CACAU|GU-A 4561 GCUA|A|CUG GUCCUAAUU- GCUCUAuu-| CACGCU-UUU G-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS B.diminuta 4759 bp RNA RNA 03-JUL-1997 DEFINITION Brevundimonas diminuta.; 23S ribosomal RNA; 23S rRNA gene. ACCESSION X87288 KEYWORDS 23S ribosomal RNA; 23S rRNA gene. SOURCE Brevundimonas diminuta. ORGANISM Brevundimonas diminuta. REFERENCE 1 (bases 1 to 2780) AUTHORS Bachleitner,M., Klugbauer,N., Springer,N., Lane,D., Nietupsky ,R., Weizenegger,M. and Schleifer,K.H. Ludwig,W., Rossello-Mora,R., Aznar,R., Klugbauer,S., Spring,S ., Reetz,K., Beimfohr,C., Brockmann,E., Kirchhof,G., Dorn,S., TITLE Comparative sequence analysis of 23S rRNA from proteobacteria JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2780) AUTHORS Ludwig,W. TITLE Direct Submission JOURNAL Submitted (18-MAY-1995) W. Ludwig, Lehrstuhl fuer Mikrobiologie, Technische Universitaet Muenchen, Muenchen, FRG STANDARD No information REFERENCE 3 (bases 1 to 2780) AUTHORS Ludwig,W., Rossello-Mora,R., Aznar,R., Klugbauer,S., Spring,S., Reetz,K., Beimfohr,C., Brockmann,E., Kirchhof,G. , Dorn,S., Bachleitner,M., Klugbauer,N., Springer,N., Lane, D., Nietupsky,R., Weizenegger,M. and Schleifer,K.H. TITLE Comparative sequence analysis of 23S rRNA from proteobacteria JOURNAL Syst. Appl. Microbiol. 18, 164-188 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X87288 BASE COUNT 729 a 641 c 853 g 557 t 1979 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GA UCAAGCGU-- U-GAAGGGCU UCUGACGGAU 121 G|CCUUGG|C GUAGAG|AG| GC-GAUGAAA GA|CGUG(GC AA-GC-)U|- GCG-AUAAGA 181 ACCGGG|-GA GGC(G-CU-A GCA-)CCCUU UG-AUC-CGG UUAUC|UCUG AAUGGG(GAA 241 A)CCC|ACCU U---(ugcgg ucuuccaa-- ---------- ---------- ---------- 301 ---------- -------cuc ugcu(uuuc- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---)ggagca gcg------- ---------- 421 ---------- ---------a uuggaugauc gc--uua-)- --AAGGU-AC AAUGA-CCU( 481 GA-AUACA-- UA)GGG-uuc au-u--GAG- C-GAAC|CC- GGGGAACU|G A(AACA)UCU 541 CAGUA-CCCG GAGGAAAGGA CAUC(-AACC --)GAGAC|U CC-CGUAGUA GU(GGCGA)G 601 CGA-ACC-GG GA-CCA-GGC C--------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- agugcucuug ugaaauaa-a gucGAAc-gg a-a(u-ggaa a)g-uccggc 781 |c(aua)gcG GG(UGACAGC )CCCGU-Aga c-gucaaaca -gcaagaga- ---------- 841 ---------- ---------- -----cucGA GUAGGGCGGG A(CACGUG-A AA)UCCUGUC 901 UGAACAU-GG G-GG(GACCA C)CC-UCC-A AGCCUAA--- -GUACUCCUC UACGACCGAU 961 AGUG-AAC-A AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GAC AA-)GGGGA- 1021 -GUGAAA-CA GAUCCUGAAA UCGG-AAGCC UACAA-G-CA GUCGGAGccg -c-------- 1081 --------(- --caagc--) ---------- -----g-cgg UGACGGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUCA-UGUG- UCGAGC-AAG CUUAAGCC-( -G-UUA)-GG 1201 U-GUAGGCGC AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC G--------- ---------- 1261 ---------- -----cu-aa G-UUCGACGU AUGA-GACCC GAAAC-CAG- GUGA-UCUAU 1321 CCAUGAG|CA GGAUGAAGGU AAGG(UAAC) AC-UUACUGG AGGUCCGAAC C-CGUGAAU( 1381 -GUUGAAAA) AUUCU|GGG- AUGAC-UUGU GGAUAGGGGU (-GAAAG)GC CAAUCAAACC 1441 UGGACAUAGC UGGUUCUCCG CGAAAUCUAU (-UUAG)GUA GAGC|-GUCC GAcga---A| 1501 -UAC|CCUGG G|GGGUAG|A GC-ACUGG-A UGGUUGC-GG |-GCUGC(gc ga-)GCGGUA 1561 CCAAUACUAA -CCAAACUCC GAA-UA-|CC C-A-G-G--A GUAC----U| AUC-GGGCAG 1621 ACACAC--GG C-GGGU(GCU AAC)GUCCGU -CGUG-AAAA GGG(-AAACA A-)CCCUAAC 1681 CAUCAUCUAA G-GC|CCCC- AAGUC-AUGG -C-UAA-GUG ------GGAA ACGAUGUG-G 1741 GAUugcuuu- gacaAUCAGG AGGUUGGC(U UAGAAGCA)G CCAU-CCU|U (UAA)A|GAA 1801 AGC(GUAACA )GC|UCACUG AUc-----AA GC-GAU-CC- -UGC|GCGGA AAAU-GUAA- 1861 CGGGGCUAAA GCCAU-G|C| GCCGAAGAU| AUGG|guuug cag----(uu ua-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -cugcaagc- GG-UAGCGGA G|-----CGU 2221 U-CCG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCUG-U 2341 GAAGGUC-A- A-CU(-GUGA -)GGU--UGG CUGG|AGGUA U-CGGAAGUG AGAAUGC-UG 2401 AC|AUG-AGU A--ACGAUAA ACAGUG(UGA GAAA)CACUG U|CGCC-GAA AGACCAAGGG 2461 UUCCUG-CGU AAAG-(CUAA U)CU|G-CGC AGGGUUAGU| CGG|c-CCCU AAGGCGAGGC 2521 U(GAAA)-A- GCGU-AGUCG AUGG-GAAGC AGG-(UA-AA UAUU)C-CUG C|AC|ca-g- 2581 cu-gga---- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------a g--uga-cgg au--ggcaua aguc-g-|uc g-ggg(cuua 2761 uuggau-ug- -u)uc-ccgg -|-------- ---------- ---------- ---------- 2821 ---------- ----(----- ---)--|--- ---------- ---------- ---------- 2881 --------|- ---|------ ---------- -(-------) ---------- ---------- 2941 ---cggu-gg cguu-----| gucccuggaa a-ua------ ---------- -----acu-c 3001 cagc--ag-a g|a|CCGUAC CCGAAACC(G ACACA)GG|U GG-UCAGGU- A-(GAGUA)U 3061 ACCAAGGCGC ||UUGAGAGA ACUGUGCUG- ---------- ----AAGGAA CUCGGCAAAU 3121 UGCACGCGUA AC(-UUCG)G AAUAAGCGUG |ACuca---- -ccc------ --------ug 3181 g(-gcaa-)c ca-------- ------gga- --cugag-U| G(GCA)CAAG CCAGGGG-GU 3241 AG|CGACU-- ---GU(UUAG CAAAA)ACAU AGGGCUCUG| CGAAGCA(UC AA------)U 3301 GCGACGU-AU AGGGUCUGA- CGCCUGCCCG GU|GCCU-GA A-GGUUAAAG GGAGGA---- 3361 GU-------- (G-AAA---- --------GC ------UCCG AACUGAAGCC |CAGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-CUUCCCC ACUGUCUCCA GCACAGGCUC 3541 A|GUGAAAUU |GAAUUCC-C CG(UGAAGAU G)CGGGGUUC CCGCGGU-CA GACGGAAAGA 3601 CCCUAUGA|A CCU-UUACUA U|AGCUUCGC CUU|GGCGUU AGCGACCGUA UGUGUAGGAU 3661 AGGUGGGAGG CUAUGAAG-- CCGGGGC(GC CA)GCUCUGG UGGAGCCAUC -C-UUGAAAU 3721 ACCACC|CUU A-CUGUcGUU GAC-GUCUAA -CCGAGG--- -GCCG(--UU -AUC)-CGGU 3781 CCCGG-GACA UGGCGUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|GCCUC C(CAA-AGUG 3841 UAAC)GGAGG C|G|C|GCGA UGGUUAGC|U CAGACCGG(U CGGAAA)UCG GUCGUC-GA| 3901 GU(G|CAAUG )GCAUAAGCU AGCCUGACUG CGAGAC(UGA CAA)GUCGAG CAGAGAC(GA 3961 AA)GU-CGGC |CAUAGUGAU CCGGUGGUCC CG(CGUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|UAGG|G AUAACAG|GC UGA--UUUUG CCCAAGA(G- UCC-AUA)UC 4081 GACGGCA-AA GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GGAG 4141 C---A)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGUGGUAC G-UGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-U GGU-CCCUAU -CU|GCCGUG G-G|UG-UUC 4261 GAAGCUU|GA -|GAGGAUC- UGU------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACA UACCUCUGGU GGACCUGU|C AUGGC(GC-C A-)GCCGUG- CAGCAGGGUA 4381 GCU-AAGUAU GGAAUAGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAACU AACCUC|AAA 4441 ACAAGGCUUC G|C-|----- -(------)- --------U- GAGG|-AU|C GUGG-(AAGA 4501 CU-A)CCACG -UUGAUAG|G CCAG|GUGUG -GAAGCGCG- -(GUGA-)-- CGUGU|GA-A 4561 GCUU|A|CUG GUACUAAUA- AUCCGAUCG| GCUUGA-UCG U-------|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS R.palustri 4759 bp RNA RNA 11-JAN-191 DEFINITION Rhodopseudomonas palustris. ACCESSION No information KEYWORDS No information. SOURCE Rhodopseudomonas palustris. ORGANISM Rhodopseudomonas palustris. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X71839; X71939 ID RP23SRRN standard; DNA; PRO; 2826 BP. XX AC X71839; X71939; XX DT 28-MAR-1994 (Rel. 39, Created) DT 28-MAR-1994 (Rel. 39, Last updated, Version 7) XX DE R.palustris gene for 23S ribosomal RNA XX KW 23S ribosomal RNA; ribosomal RNA. XX OS Rhodopseudomonas palustris OC Prokaryota; Bacteria; Gracilicutes; Anoxyphotobacteria; OC Purple bacteria; Purple nonsulfur bacteria. XX RN [1] RA Springer N., Ludwig W., Hardarson G.; RT "A 23S rRNA targeted specific hybridization probe for RT Bradyrhizobium japonicum"; RL Syst. Appl. Microbiol. 16:468-470(1993). XX RN [2] RP 1-2826 RA Ludwig W.; RT ; RL Submitted (05-MAY-1993) to the EMBL/GenBank/DDBJ databases. RL W. Ludwig, Lehrst. f. Mikrobiologie TU Muenchen, Arcisstr. 21, 8000 RL Muenchen 2, FRG XX CC Entry cited incorrectly as X71939 in journal XX FH Key Location/Qualifiers FH FT source 1..2826 FT /organism="Rhodopseudomonas palustris" FT /strain="DSM 126" FT rRNA 1..2826 FT /product="23S ribosomal RNA" XX SQ Sequence 2826 BP; 733 A; 651 C; 862 G; 580 T; 0 other; BASE COUNT 733 a 651 c 862 g 580 t 1933 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------AA UCAAGUGCC- U-UAAGGGUG UUCGACGGAU 121 G|CCUUGG|C GCUGAG|AG| GC-GAUGAAG GA|CGUG(CU AC-GC-)U|- GCG-AUAAGC 181 CAUGGG|-GA GCU(G-CG-A AGA-)AGCUU UG-AUC-CGU GGAUU|UCCG AAUGGG(GAA 241 A)CCC|ACCU U---(cgaua gccggaacuc caagg----- ---------- ---------- 301 ---------- --ccuu-gcg uuuc(gaga- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---)gagac- ---------- ------guga 421 ggg------- ----uuugga uuuccgguua ucaagag-)- --AAGGU-AU GAGAUCUCU( 481 GA-AUACA-- UA)GGA-GGU -UUC--AAG- C-GAAC|CC- AGGGAACU|G A(AACA)UCU 541 AAGUA-CCUG GAGGAAAGGA CAUC(-AACC --)GAGAC|U CC-GCUAGUA GU(GGCGA)G 601 CGA-ACG-CG UA-CCA-GGC C--------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- agucaucauu ggaagac-aa uugGAAu-cu guc(a-ggaa a)g-cagagc 781 |c(uua)gaG GG(UGAUAGC )CCCGU-Aca a-guaauuca accauugaug ---------- 841 ---------- ---------- -----cUCGA GUAAGGCGGG A(CACGUG-A AA)UCCUGUC 901 UGAACAU-GG G-GG(GACCA C)CC-UCC-A AGCCUAA--- -GUACUCCUC AGCGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GAC GA-)GGGGA- 1021 -GUGAAA-UA GUUCCUGAAA UCGG-ACACC UACAA-A-CA GACGGAGCCC -aag-a---- 1081 --------(- --uacgu--) ---------- ---ucu-GGG UGACGUCGUA CCU(UUU-GU 1141 AU|U)AUGG| -GCCAGCGAC UUAA-UUUA- ACGAGC-AAG CUUAAGCC-( -G-GUA)-GG 1201 U-GUAGGCGC AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC GU-------- ---------- 1261 ---------- ------C-AA G-UUCGUUGG AUUA-GACCC GAAAC-CUA- GUGA-UCUAG 1321 CCAUGAG|CA GGUUGAAGGU GAGG(UAAC) AC-UCACUGG AGGACCGAAC G-GGUGCCU( 1381 -GUUGAAAA) AGGCU|CCG- AUGAC-UUGU GGUUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 GGGAAAUAGC UGGUUCUCCG CGAAAGAUAU (-UUAG)GUA UCGC|-CUCG GACGA---A| 1501 -UAC|CUCAG G|GGGUAG|A GC-ACUGG-A UGGGCUA-GG |-GGGAC(uu acc)GUCUUA 1561 CCAAACCCAA -CCAAACUCC GAA-UA-|CC U-G-A-G--A GUAC----U| AUC-CGGGAG 1621 UCACAC--GG C-GGGU(GCU AAC)GUCCGU -CGUG-GAGA GGG(-AAACA A-)CCCUGAC 1681 CUACAGCUAA G-GC|CCCC- AAUUC-GUGG -C-UAA-GUG ------GGAA AGGAUGUG-G 1741 AAAUCCCAA- AACAACCAGG AGGUUGGC(U UAGAAGCA)G CCAU-CCU|U (UAA)A|GAA 1801 AGC(GUAACA )GC|UCACUG GUcuaaaUAA GG-GUU-UC- -UGC|GCCGA AGAU-GUAA- 1861 CGGGGCUCAA GCCAC-G|A| GCCGAAGCU| UAGG|gugug c------(gc aa-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ---gcacgc- GG-UAGCGGA G|-----CGU 2221 U-CUG-UAAg ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --C-CUGC-G 2341 AAGGGCG-A- C-CC(-GUGA -)GGG--CGC CUGG|AGGUA U-CAGAAGUG CGAAUGC-UG 2401 GC|AUG-AGU A--ACGACAA ACACUG(UGA AAGA)CAGUG U|CGCC-GAA AGUCCAAGGG 2461 UUCCUG-CGU AAAG-(UUAA U)CU|U-CGC AGGGUUAGC| CGG|U-CCCU AAGGCGAGGC 2521 C(GAAA)-G- GCGU-AGUCG AUGG-GAAUC ACG-(UG-AA UAUU)C-GUG A|GC|ca-g- 2581 ug-gau---- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------g g--uga-cga au--cccuua uguu-g-|uu c-gac(cuua 2761 cuggau-ug- --)gu-cggg -|-------- ---------- ---------- ---------- 2821 ---------- ----(----- ---)--|--- ---------- ---------- ---------- 2881 --------|- ---|------ ---------- -(-------) ---------- ---------- 2941 ---ccuc-ga cggg-----| guuccaggaa a-ua------ ---------- -----gcc-u 3001 ccacau--ca g|a|CCGUAC CCGAAACC(G ACACA)GG|U GG-ACUGGU- A-(GAGUA)U 3061 ACCAAGGCGC ||UUGAGAGA ACUAUGUUG- ---------- ----AAGGAA CUCGGCAAUU 3121 UACCUCCGUA AC(-UUCG)G GAUAAGGAGG |ccuucu--- -guu------ --------ug 3181 c(-gcaa-)g cagg------ -------ca- ---ggag-G| G(GCA)CAGA CCAGGGG-GU 3241 GG|CAACU-- ---GU(UUAA CAAAA)ACAC AGGGCUCUG| CGAAAUC(GC AA------)G 3301 AUGACGU-AU AGGGUCUGA- CGCCUGCCCG GU|GCCG-GA A-GGUUAAGA GGAGGA---- 3361 GU-------- (G-CAA)--- --------GC ------UCUG AAUUGAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAU GA-CUUCCCC GCUGUCUCCA ACAUAGACUC 3541 A|GUGAAAUU |GAAUUCC-C CG(UGAAGAU G)CGGGGUUC CUGCGGU-CA GACGGAAAGA 3601 CCCCGUGC|A CCU-UUACUG U|AGCUUUGC GCU|GGUAUU CGUGACUGUU UGUGUAGAAU 3661 AGGUGGUAGG CUUUGAAG-- CUCGGGC(GC CA)GCUCGGG UGGAGCCGCA AU-GUGAAAU 3721 ACCACC|CUA A-UGGUUAUG GAU-AUCUAA -CCGCGA--- -UCCC(--UU -AUC)-GGGU 3781 UCCGG-GACA GCGCAUGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(CAA-AGAG 3841 UAAC)GGAGG C|G|U|GCGA CGGUAGGC|U CAGAACGG(U CGGAAA)UCG UUCGUC-GA| 3901 GU(A|CAAUG )GCAUAAGCC UGCCUGACUG CGAGAC(CAA CAA)GUCGAG CAGAGAC(GA 3961 AA)GU-CGGU |CAUAGUGAU CCGGUGGUCC CG(CGUGGA) UGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CGC|CGGG|G AUAACAG|GC UGA--UGACG CCCAAGA(G- UCC-AUA)UC 4081 GACGGCG-UC GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GGAG 4141 A---A)-GGU CCCAAGGGU| UCGGC(UGUU C)GC-CGAUU AAAGUGGUAC G-UGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|UG-UUG 4261 GAAUGUU|GA -|GAGGAUU- UGC------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGGUGA|ACG UACCUCUGGU GGAGCUGU|U GUCGC(GC-C A-)GCGGCA- GUGCAGCAUA 4381 GCU-AUGUAC GGACGGGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAACC CACCUC|AAA 4441 ACGAGCAUUC C|CU|----- -(------)- --------U- GAGA|-AC|C GUGG-(AAGA 4501 CC-A)CCACG -UUGAUAG|G CCGG|AUGUG -GAAGUGCG- -(ACAA-)-- UACAU|GUCA 4561 G-UU|A|CCG GUACUAAUC- GUUCGAUUG| GCUUGA-UUG C-------|u cucauuau~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS B.lupini 4759 bp RNA RNA 03-JUL-1997 DEFINITION Bradyrhizobium lupini.; 23S ribosomal RNA; 23S rRNA gene. ACCESSION X87283 KEYWORDS 23S ribosomal RNA; 23S rRNA gene. SOURCE Bradyrhizobium lupini. ORGANISM Bradyrhizobium lupini. REFERENCE 1 (bases 1 to 2882) AUTHORS Bachleitner,M., Klugbauer,N., Springer,N., Lane,D., Nietupsky ,R., Weizenegger,M. and Schleifer,K.H. Ludwig,W., Rossello-Mora,R., Aznar,R., Klugbauer,S., Spring,S ., Reetz,K., Beimfohr,C., Brockmann,E., Kirchhof,G., Dorn,S., TITLE Comparative sequence analysis of 23S rRNA from proteobacteria JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2882) AUTHORS Ludwig,W. TITLE Direct Submission JOURNAL Submitted (18-MAY-1995) W. Ludwig, Lehrstuhl fuer Mikrobiologie, Technische Universitaet Muenchen, Muenchen, FRG STANDARD No information REFERENCE 3 (bases 1 to 2882) AUTHORS Ludwig,W., Rossello-Mora,R., Aznar,R., Klugbauer,S., Spring,S., Reetz,K., Beimfohr,C., Brockmann,E., Kirchhof,G. , Dorn,S., Bachleitner,M., Klugbauer,N., Springer,N., Lane, D., Nietupsky,R., Weizenegger,M. and Schleifer,K.H. TITLE Comparative sequence analysis of 23S rRNA from proteobacteria JOURNAL Syst. Appl. Microbiol. 18, 164-188 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X87283 BASE COUNT 751 a 658 c 887 g 586 t 1877 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------AA UCAAGUGCC- U-UAAGGGUG UUCGGUGGAU 121 G|CCUUGG|C GCUGAG|AG| GC-GAUGAAG GA|CGUG(CU AC-GC-)U|- GCG-AUAAGC 181 CGUGGG|-GA GCU(G-CG-A AGA-)AGCUU UG-AUC-CAU GGAUU|UCCG AAUGGG(GAA 241 A)CCC|ACCU U---(cgaua gccggaacuc caagaccuuu gucgaaagac aucggugugg 301 gguu------ -----cga-- -uca(gauga ---------- ---------- ---------- 361 ---------- ---------- ---------- ---)ugugag aagcc-aggc cuuuagauuu 421 cgaucga-ag agguuuugga uuuccgguua ucaagag-)- --AAGGU-AU GAGACUUCU( 481 GA-AUACA-- UA)GGA-GGU -UUC--AAG- C-AAAC|CC- AGGGAACU|G A(AACA)UCU 541 AAGUA-CCUG GAGGAAAGGA CAUC(-AACA --)GAGAC|U CC-GUUAGUA GU(GGCGA)G 601 CGA-ACG-CG GA-CCA-GGC C--------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- agugauacau caaagac-aa ucgGAAc-cg guc(a-ggaa a)g-ccgggc 781 |c(uca)gaG GG(UGAUAGC )CCCGU-Acg a-guaaugcg augauguauc ---------- 841 ---------- ---------- -----cACGA GUAAGGCGGG A(CACGUG-A AA)UCCUGUC 901 UGAACGC-GG G-GG(GACCA C)CC-UCC-A AGCCUAA--- -GUACUCCUC AGCGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GAC GA-)GGGGA- 1021 -GUGAAA-UA G-ACCUGAAA CCGG-ACACC UACAA-A-CA GAUGGAGCCC -aag-a---- 1081 --------(- --uacgu--) ---------- ---ucu-GGG UGACAUCGUA CCU(UUU-GU 1141 AU|U)AUGG| -GCCAGCGAC UUAA-UUUA- ACGAGC-AAG CUUAAGCC-( -G-AUA)-GG 1201 C-GAAGGCGC AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC GU-------- ---------- 1261 ---------- ------C-AA G-UUCGUUGU AUUA-GACCC GAAAC-CUA- GUGA-UCUAG 1321 CCAUGAG|CA GGUUGAAGGU GAGG(UAAC) AC-UCACUGG AGGACCGAAC G-GGUGCCU( 1381 -GUUGAAAA) AGGCU|CCG- AUGAC-UUGU GGUUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 GGGAAAUAGC UGGUUCUCCG CGAAAGAUAU (-UUAG)GUA GCGC|-CUCG GAUGA---A| 1501 -UAC|CUCAG G|GGGUAG|A GC-ACUGG-A UGGGCUA-GG |-GGGAC(uu acc)GUCUUA 1561 CCAAACCCAA -CCAAACUCC GAA-UA-|CC U-G-A-G--A GUAC----U| AUC-CGGGAG 1621 UCACAC--GG C-GGGU(GCU AAC)GUCCGU -CGUG-GAGA GGG(-AAACA A-)CCCGGAC 1681 CUACAGCUAA G-GC|CCCU- AAUUC-GUGG -C-UAA-GUG ------GGAA AGGAUGUG-G 1741 AAAUCCCAA- AACAACCAGG AGGUUGGC(U UAGAAGCA)G CCAU-CCU|U (UAA)A|GAA 1801 AGC(GUAACA )GC|UCACUG GUcuaaaUAA GG-GUU-UC- -UGC|GCCGA AGAU-GUAA- 1861 CGGGGCUCAA GCCAC-G|A| GCCGAAGCU| UAGG|gugug aucc---(gc aa-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- gggucacgc- GG-UAGCGGA G|-----CGU 2221 U-CUG-UAAG ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --C-CUGC-G 2341 AA-GGGC-GA C-UC(-GUGA -)GAG--CGC CUGG|AGGUA U-CAGAAGUG CGAAUGC-UG 2401 GC|AUG-AGU A--ACGACAA ACACUG(UGA AAGA)CAGUG U|CGCC-GAA AGUCCAAGGG 2461 UUCCUG-CGU AAAG-(UUAA U)CU|U-CGC AGGGUUAGC| CGG|U-CCCU AAGGCGAGGC 2521 C(GAAA)-G- GCGU-AGUCG AUGG-GAAUG CAG-(UG-AA UAUU)C-UGC A|GC|ca-g- 2581 ug-gau---- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------g g--uga-cga au--cccgug uguu-g-|uc c-gac(cuua 2761 cuggau-ug- --)gu-uggg -|-------- ---------- ---------- ---------- 2821 ---------- ----(----- ---)--|--- ---------- ---------- ---------- 2881 --------|- ---|------ ---------- -(-------) ---------- ---------- 2941 ---cuuc-ga aggg-----| guuccaggaa a-ua------ ---------- -----gcc-u 3001 ccacau--ca g|a|CCGUAC CCGAAACC(G ACACA)GG|U GG-ACUGGU- A-(GAGUA)U 3061 ACCAAGGCGC ||UUGAGAGA ACUAUGUUG- ---------- ----AAGGAA CUCGGCAAUU 3121 UACCUCCGUA AC(-UUCG)G GAUAAGGAGG |cccauu--- -gcu------ --------cg 3181 c(-gcaa-)g cg-------- ------ggc- --agugg-G| G(GCA)CAGA CCAGGGG-GU 3241 GG|CAACU-- ---GU(UUAA CAAAA)ACAC AGGGCUCUG| CGAAAUC(GC AA------)G 3301 AUGACGU-AU AGGGUCUGA- CGCCUGCCCG GU|GCCG-GA A-GGUUAAGA GGAGAG---- 3361 GU-------- (G-CAA)--- --------GC ------CUUG AAUCGAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAU GA-CUUCCCC GCUGUCUCCA ACAUAGACUC 3541 A|GUGAAAUU |GAAUUCC-C CG(UGAAGAU G)CGGGGUUC CUGCGGU-CA GACGGAAAGA 3601 CCCCGUGC|A CCU-UUACUG U|AGCUUUGC GCU|GGUAUU CGUGACUGUU UGUGUAGAAU 3661 AGGUGGUAGG CUUUGAAG-- CCGUGGC(GC CA)GCCAUGG UGGAGCCGAA AU-GUGAAAU 3721 ACCACC|CUA A-UGGUUAUG GAU-AUCUAA -CCGCGU--- -CCCC(--UC -AGC)-GGGG 3781 ACCGG-GACA GCGCAUGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(CAA-AGAG 3841 UAAC)GGAGG C|G|U|GCGA AGGUAGGC|U CAGAACGG(U CGGAAA)UCG UUCGUC-GA| 3901 GU(A|UAAUG )GCAUAAGCC UGCCUGACUG CGAGAU(CUA CGA)AUCGAG CAGAGAC(GA 3961 AA)GU-CGGU |CAUAGUGAU CCGGUGGUCC CG(CGUGGA) UGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CGC|CGGG|G AUAACAG|GC UGA--UGACG CCCAAGA(G- UCC-AUA)UC 4081 GACGGCG-UC GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GGAG 4141 A---A)-GGU CCCAAGGGU| UCGGC(UGUU C)GC-CGAUU AAAGUGGUAC G-UGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|UG-UUG 4261 GAAUGUU|GA -|GAGGAUU- UGC------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGGUGA|ACG UACCUCUGGU GGAGCUGU|U GUCGC(GC-C A-)GCGGCA- GUGCAGCAUA 4381 GCU-AUGUAC GGACGGGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAACC CACCUC|AAA 4441 ACGAGCAUUC C|CU|----- -(------)- --------U- GAGA|-AC|C GUGG-(AAGA 4501 CC-A)CCACG -UUGAUAG|G CCGG|GUGUG -GAAGUGCA- -(GUAA-)-- UGCAU|GC-A 4561 GCUU|A|CCG GUACUAAUC- GUUCGAUUG| GCUUGA-UUG C-------|u cucauuuu-- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS B.japoni.1 4759 bp RNA RNA 11-JAN-191 DEFINITION Bradyrhizobium japonicum. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium japonicum. ORGANISM Bradyrhizobium japonicum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X71840 ID BJ23SRRN standard; DNA; PRO; 2882 BP. XX AC X71840; XX DT 28-MAR-1994 (Rel. 39, Created) DT 28-MAR-1994 (Rel. 39, Last updated, Version 2) XX DE B.japonicum gene for 23S ribosomal RNA XX KW 23S ribosomal RNA; ribosomal RNA. XX OS Bradyrhizobium japonicum OC Prokaryota; Bacteria; Gracilicutes; Scotobacteria; OC Aerobic rods and cocci; Rhizobiaceae. XX RN [1] RA Springer N., Ludwig W., Hardarson G.; RT "A 23S rRNA targeted specific hybridization probe for RT Bradyrhizobium japonicum"; RL Syst. Appl. Microbiol. 16:468-470(1993). XX RN [2] RP 1-2882 RA Ludwig W.; RT ; RL Submitted (05-MAY-1993) to the EMBL/GenBank/DDBJ databases. RL W. Ludwig, Lehrst. f. Mikrobiologie TU Muenchen, Arcisstr. 21, 8000 RL Muenchen 2, FRG XX FH Key Location/Qualifiers FH FT source 1..2882 FT /organism="Bradyrhizobium japonicum" FT /strain="DSM 30131" FT rRNA 1..2882 FT /product="23S ribosomal RNA" XX SQ Sequence 2882 BP; 751 A; 656 C; 887 G; 588 T; 0 other; BASE COUNT 751 a 656 c 887 g 588 t 1877 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------AA UCAAGUGCC- U-UAAGGGUG UUCGGUGGAU 121 G|CCUUGG|C GCUGAG|AG| GC-GAUGAAG GA|CGUG(CU AC-GC-)U|- GCG-AUAAGC 181 CGUGGG|-GA GCU(G-CG-A AGA-)AGCUU UG-AUC-CAU GGAUU|UCCG AAUGGG(GAA 241 A)CCC|ACCU U---(cgaua gccggaacuc caagaccuuu gucgaaagac aucggugugg 301 gguu------ -----cga-- -uca(gauga ---------- ---------- ---------- 361 ---------- ---------- ---------- ---)ugugag aagcc-aggc cuuuagauuu 421 cgaucga-ag agguuuugga uuuccgguua ucaagag-)- --AAGGU-AU GAGACUUCU( 481 GA-AUACA-- UA)GGA-GGU -UUC--AAG- C-AAAC|CC- AGGGAACU|G A(AACA)UCU 541 AAGUA-CCUG GAGGAAAGGA CAUC(-AACA --)GAGAC|U CC-GUUAGUA GU(GGCGA)G 601 CGA-ACG-CG GA-CCA-GGC C--------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- agugauacau caaagac-aa ucgGAAc-cg guc(a-ggaa a)g-ccgggc 781 |c(uca)gaG GG(UGAUAGC )CCCGU-Acg a-guaaugcg augauguauc ---------- 841 ---------- ---------- -----cACGA GUAAGGCGGG A(CACGUG-A AA)UCCUGUC 901 UGAACGC-GG G-GG(GACCA C)CC-UCC-A AGCCUAA--- -GUACUCCUC AGCGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GAC GA-)GGGGA- 1021 -GUGAAA-UA G-ACCUGAAA CCGG-ACACC UACAA-A-CA GAUGGAGCCC -aag-a---- 1081 --------(- --uacgu--) ---------- ---ucu-GGG UGACAUCGUA CCU(UUU-GU 1141 AU|U)AUGG| -GCCAGCGAC UUAA-UUUA- ACGAGC-AAG CUUAAGCC-( -G-AUA)-GG 1201 U-GUAGGCGC ACG(GAAA-) GCGAGUCU(G AA-UA)GGGC GU-------- ---------- 1261 ---------- ------C-AA G-UUCGUUGU AUUA-GACCC GAAAC-CUA- GUGA-UCUAG 1321 CCAUGAG|CA GGUUGAAGGU GAGG(UAAC) AC-UCACUGG AGGACCGAAC G-GGUGCCU( 1381 -GUUGAAAA) AGGCU|CCG- AUGAC-UUGU GGUUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 GGGAAAUAGC UGGUUCUCCG CGAAAGAUAU (-UUAG)GUA GCGC|-CUCG GAUGA---A| 1501 -UAC|CUCAG G|GGGUAG|A GC-ACUGG-A UGGGCUA-GG |-GGGAC(uu acc)GUCUUA 1561 CCAAACCCAA -CCAAACUCC GAA-UA-|CC U-G-A-G--A GUAC----U| AUC-CGGGAG 1621 UCACAC--GG C-GGGU(GCU AAC)GUCCGU -CGUG-GAGA GGG(-AAACA A-)CCCGGAC 1681 CUACAGCUAA G-GC|CCCU- AAUUC-GUGG -C-UAA-GUG ------GGAA AGGAUGUG-G 1741 AAAUCCCAA- AACAACCAGG AGGUUGGC(U UAGAAGCA)G CCAU-CCU|U (UAA)A|GAA 1801 AGC(GUAACA )GC|UCACUG GUcuaaaUAA GG-GUU-UC- -UGC|GCCGA AGAU-GUAA- 1861 CGGGGCUCAA GCCAC-G|A| GCCGAAGCU| UAGG|gugug aucc---(gc aa-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- gggucacgc- GG-UAGCGGA G|-----CGU 2221 U-CUG-UAAg ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --C-CUGC-G 2341 AAGGGCG-A- C-UC(-GUGA -)GAG--CGC CUGG|AGGUA U-CAGAAGUG CGAAUGC-UG 2401 GC|AUG-AGU A--ACGACAA ACACUG(UGA AAGA)CAGUG U|CGCC-GAA AGUCCAAGGG 2461 UUCCUG-CGU AAAG-(UUAA U)CU|U-CGC AGGGUUAGC| CGG|U-CCCU AAGGCGAGGC 2521 C(GAAA)-G- GCGU-AGUCG AUGG-GAAUG CAG-(UG-AA UAUU)C-UGC A|GC|ca-g- 2581 ug-gau---- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------g g--uga-cga au--cccgug uguu-g-|uc c-gac(cuua 2761 cuggau-ug- --)gu-uggg -|-------- ---------- ---------- ---------- 2821 ---------- ----(----- ---)--|--- ---------- ---------- ---------- 2881 --------|- ---|------ ---------- -(-------) ---------- ---------- 2941 ---cuuc-ga aggg-----| guuccaggaa a-ua------ ---------- -----gcc-u 3001 ccacau--ca g|a|CCGUAC CCGAAACC(G ACACA)GG|U GG-ACUGGU- A-(GAGUA)U 3061 ACCAAGGCGA ||UUGAGAGA ACUAUGUUG- ---------- ----AAGGAA CUCGGCAAUU 3121 UACCUCCGUA AC(-UUCG)G GAUAAGGAGG |cccauu--- -gcu------ --------cg 3181 c(-gcaa-)g cg-------- ------ggc- --agugg-G| G(GCA)CAGA CCAGGGG-GU 3241 GG|CAACU-- ---GU(UUAA CAAAA)ACAC AGGGCUCUG| CGAAAUC(GC AA------)G 3301 AUGACGU-AU AGGGUCUGA- CGCCUGCCCG GU|GCCG-GA A-GGUUAAGA GGAGAG---- 3361 GU-------- (G-CAA)--- --------GC ------CUUG AAUCGAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAU GA-CUUCCCC GCUGUCUCCA ACAUAGACUC 3541 A|GUGAAAUU |GAAUUCC-C CG(UGAAGAU G)CGGGGUUC CUGCGGU-CA GACGGAAAGA 3601 CCCCGUGC|A CCU-UUACUG U|AGCUUUGC GCU|GGUAUU CGUGACUGUU UGUGUAGAAU 3661 AGGUGGUAGG CUUUGAAG-- CCGUGGC(GC CA)GCCAUGG UGGAGCCGAA AU-GUGAAAU 3721 ACCACC|CUA A-UGGUUAUG GAU-AUCUAA -CCGCGU--- -CCCC(--UC -AGC)-GGGG 3781 ACCGG-GACA GCGCAUGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(CAA-AGAG 3841 UAAC)GGAGG C|G|U|GCGA AGGUAGGC|U CAGAACGG(U CGGAAA)UCG UUCGUC-GA| 3901 GU(A|UAAUG )GCAUAAGCC UGCCUGACUG CGAGAU(CUA CGA)AUCGAG CAGAGAC(GA 3961 AA)GU-CGGU |CAUAGUGAU CCGGUGGUCC CG(CGUGGA) UGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CGC|CGGG|G AUAACAG|GC UGA--UGACG CCCAAGA(G- UCC-AUA)UC 4081 GACGGCG-UC GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GGAG 4141 A---A)-GGU CCCAAGGGU| UCGGC(UGUU C)GC-CGAUU AAAGUGGUAC G-UGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|UG-UUG 4261 GAAUGUU|GA -|GAGGAUU- UGC------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGGUGA|ACG UACCUCUGGU GGAGCUGU|U GUCGC(GC-C A-)GCGGCA- GUGCAGCAUA 4381 GCU-AUGUAC GGACGGGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAACC CACCUC|AAA 4441 ACGAGCAUUC C|CU|----- -(------)- --------U- GAGA|-AC|C GUGG-(AAGA 4501 CC-A)CCACG -UUGAUAG|G CCGG|GUGUG -GAAGUGCA- -(GUAA-)-- UGCAU|GC-A 4561 GCUU|A|CCG GUACUAAUC- GUUCGAUUG| GCUUGA-UUG C-------|u cucauuuu~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS B.japoni.2 4759 bp RNA RNA 11-JAN-191 DEFINITION Bradyrhizobium japonicum . ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium japonicum . ORGANISM Bradyrhizobium japonicum . REFERENCE 1 (bases 1 to 2882) AUTHORS Christoph Kuendig JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: Z35330 ID BJRIBRNA standard; DNA; PRO; 6726 BP. XX AC Z35330; XX DT 22-JUL-1994 (Rel. 40, Created) DT 22-JUL-1994 (Rel. 40, Last updated, Version 1) XX DE B.japonicum (110) genes for 16S, 23S, 5S ribosomal RNA, transfer DE RNA-Ala transfer RNA-Ala XX KW 16S ribosomal RNA; 23S ribosomal RNA; 5S ribosomal RNA; KW transfer RNA-Ala; transfer RNA-Ile. XX OS Bradyrhizobium japonicum OC Prokaryota; Bacteria; Gracilicutes; Scotobacteria; OC Aerobic rods and cocci; Rhizobiaceae. XX RN [1] RP 1-6726 RA Kuendig C., Goettfert M., Beck C., Hennecke H.; RT "Localization and organization of the single rRNA operon of RT Bradyrhizobium japonicum"; RL Unpublished. XX RN [2] RP 1-6726 RA Kuendig C.; RT ; RL Submitted (21-JUL-1994) to the EMBL/GenBank/DDBJ databases. RL Kuendig C., ETH Zuerich, Mikrobiologisches Institut, RL Schmelzbergstrasse 7, Zuerich, Zuerich, Switzerland, 8092 XX FH Key Location/Qualifiers FH FT source 1..6726 FT /organism="Bradyrhizobium japonicum" FT /strain="110" FT rRNA 841..2330 FT /product="16S ribosomal RNA" FT /gene="rrs" FT tRNA 2557..2633 FT /product="transfer RNA-Ile" FT tRNA 2666..2742 FT /product="transfer RNA-Ala" FT rRNA 3139..6012 FT /product="23S ribosomal RNA" FT /gene="rrl" FT rRNA 6119..6237 FT /product="5S ribosomal RNA" FT /gene="rrf" FT misc_feature 6282..6314 FT /function="terminator" XX SQ Sequence 6726 BP; 1590 A; 1675 C; 2029 G; 1432 T; 0 other; We localized the genes as follows: rrs: 842-2329 Ile tRNA: 2557-2633 Ala tRNA: 2667-2742 rrl: 3139-6012 rrs: 6119-6237 BASE COUNT 752 a 654 c 883 g 585 t 1885 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------AA UCAAGUGCC- U-UAAGGGUG UUCGGUGGAU 121 G|CCUUGG|C GCUGAG|AG| GC-GAUGAAG GA|CGUG(CU AC-GC-)U|- GCG-AUAAGC 181 CGUGGG|-GA GCU(G-CG-A AGA-)AGCUU UG-AUC-CGC GGAUU|UCCG AAUGGG(GAA 241 A)CCC|ACCU U---(cgaua gccggaacuc caagaccuuu gucgaaagac aucggugugg 301 gguu------ -----cga-- -cca(gauaa ---------- ---------- ---------- 361 ---------- ---------- ---------- ---)uggaag augccuaggc cuuuagauuu 421 cgaucga-ag agguuuugga uuuccgguua ucaagag-)- --AAGGU-AU GAGACUUCU( 481 GA-AUACA-- UA)GGA-GGU -UUC--AAG- C-AAAC|CC- AGGGAACU|G A(AACA)UCU 541 AAGUA-CCUG GAGGAAAGGA CAUC(-AACA --)GAGAC|U CC-GUUAGUA GU(GGCGA)G 601 CGA-ACG-CG GA-CCA-GGC C--------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- agugauacau caaagac-aa ucgGAAc-ca guc(a-ggaa a)g-cugggc 781 |c(uca)gaG GG(UGAUAGC )CCCGU-Acg a-guaaugcg augauguauc ---------- 841 ---------- ---------- -----cACGA GUAAGGCGGG A(CACGUG-C AA)UCCUGUC 901 UGAACGC-GG G-GG(GACCA C)CC-UCC-A AGCCUAA--- -GUACUCCUC AGCGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GAC GA-)GGGGA- 1021 -GUGAAA-UA G-ACCUGAAA CCGG-ACACC UACAA-A-CA GAUGGAGCCC -aag-a---- 1081 --------(- --uucgu--) ---------- ---ucu-GGG UGACAUCGUA CCU(UUU-GU 1141 AU|U)AUGG| -GCCAGCGAC UUAA-UUUA- ACGAGC-AAG CUUAAGCC-( -G-AUA)-GG 1201 C-GAAGGCGU AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC GU-------- ---------- 1261 ---------- ------C-AA G-UUCGUUGU AUUA-GACCC GAAAC-CUA- GUGA-UCUAG 1321 CCAUGAG|CA GGUUGAAGGU GAGG(UAAC) AC-UCACUGG AGGACCGAAC G-GGUGCCU( 1381 -GUUGAAAA) AGGCU|CCG- AUGAC-UUGU GGUUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 GGGAAAUAGC UGGUUCUCCG CGAAAGAUAU (-UUAG)GUA UCGC|-CUCG GAUGA---A| 1501 -UAC|CUCAG G|GGGUAG|A GC-ACUGG-A UGGGCUA-GG |-GGGAC(uu acc)GUCUUA 1561 CCAAACCCAA -CCAAACUCC GAA-UA-|CC U-G-A-G--A GUAC----U| AUC-CGGGAG 1621 UCACAC--GG C-GGGU(GCU AAC)GUCCGU -CGUG-GAGA GGG(-AAACA A-)CCCGGAC 1681 CUACAGCUAA G-GC|CCCU- AAUUC-GUGG -C-UAA-GUG ------GGAA AGGAUGUG-G 1741 AAAUCCCAA- AACAACCAGG AGGUUGGC(U UAGAAGCA)G CCAU-CCU|U (UAA)A|GAA 1801 AGC(GUAACA )GC|UCACUG GUcuaaaUAA GG-GUU-UC- -UGC|GCCGA AGAU-GUAA- 1861 CGGGGCUCAA GCCAC-G|A| GCCGAAGCU| UAGG|gugug aucc---(gc aa-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- gggucacgc- GG-UAGCGGA G|-----CGU 2221 U-CUG-UAAG ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --C-CUGC-G 2341 AAGGGCG-A- C-UC(-GUGA -)GAG--CGC CUGG|AGGUA U-CAGAAGUG CGAAUGC-UG 2401 GC|AUG-AGU A--ACGACAA ACACUG(UGA AAGA)CAGUG U|CGCC-GAA AGUCCAAGGG 2461 UUCCUG-CGU AAAG-(UUAA U)CU|U-CGC AGGGUUAGC| CGG|U-CCCU AAGGCGAGGC 2521 C(GAAA)-G- GCGU-AGUCG AUGG-GAAUG CAG-(UG-AA UAUU)C-UGC A|GC|ca-g- 2581 ug-gau---- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------g g--uga-cga au--cccgug uguu-g-|uc c-gac(cuua 2761 auggau-ug- --)gu-uggg -|-------- ---------- ---------- ---------- 2821 ---------- ----(----- ---)--|--- ---------- ---------- ---------- 2881 --------|- ---|------ ---------- -(-------) ---------- ---------- 2941 ---cuuc-ga aggg-----| guuccaggaa a-ua------ ---------- -----gcc-u 3001 ccacau--ua g|a|CCGUAC CCGAAACC(G ACACA)GG|U GG-ACUGGU- A-(GAGUA)U 3061 ACCAAGGCGC ||UUGAGAGA ACUAUGUUG- ---------- ----AAGGAA CUCGGCAAUU 3121 UACCUCCGUA AC(-UUCG)G GAUAAGGAGG |cccauu--- -gcu------ --------cg 3181 c(-gcaa-)g cg-------- ------ggc- --agugg-G| G(GCA)CAGA CCAGGGG-GU 3241 GG|CAACU-- ---GU(UUAA CAAAA)ACAC AGGGCUCUG| CGAAAUC(GC AA------)G 3301 AUGACGU-AU AGGGUCUGA- CGCCUGCCCG GU|GCCG-GA A-GGUUAAGA GGAGAG---- 3361 GU-------- (G-CAA)--- --------GC ------CUUG AAUCGAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAU GA-CUUCCCC GCUGUCUCCA ACAUAGACUC 3541 A|GUGAAAUU |GAAUUCC-C CG(UGAAGAU G)CGGGGUUC CUGCGGU-CA GACGGAAAGA 3601 CCCCGUGC|A CCU-UUACUG U|AGCUUUGC GCU|GGUAUU CGUGACUGUU UGUGUAGAAU 3661 AGGUGGUAGG CUUUGAAG-- CCGUGGC(GC CA)GCCAUGG UGGAGCCGAA AU-GUGAAAU 3721 ACCACC|CUA A-UGGUUAUG GAU-AUCUAA -CCGCGU--- -UCCC(--UC -AGC)-GGGA 3781 ACCGG-GACA GCGCAUGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(CAA-AGAG 3841 UAAC)GGAGG C|G|U|GCGA AGGUAGGC|U CAGAACGG(U CGGAAA)UCG UUCGUC-GA| 3901 GU(A|UAAUG )GCAUAAGCC UGCCUGACUG CGAGAU(CUA CGA)AUCGAG CAGAGAC(GA 3961 AA)GU-CGGU |CAUAGUGAU CCGGUGGUCC CG(CGUGGA) UGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CGC|CGGG|G AUAACAG|GC UGA--UGACG CCCAAGA(G- UCC-AUA)UC 4081 GACGGCG-UC GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GGAG 4141 A---A)-GGU CCCAAGGGU| UCGGC(UGUU C)GC-CGAUU AAAGUGGUAC G-UGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|UG-UUG 4261 GAAUGUU|GA -|GAGGAUU- UGC------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGGUGA|ACG UACCUCUGGU GGAGCUGU|U GUCGC(GC-C A-)GCGGCA- GUGCAGCAUA 4381 GCU-AUGUAC GGACGGGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAACC CACCUC|AAA 4441 ACGAGCAUUC C|CU|----- -(------)- --------U- GAGA|-AC|C GUGG-(AAGA 4501 CC-A)CCACG -UUGAUAG|G CCGG|AUGUG -GAAGUGCA- -(GUAA-)-- UGCAU|GC-A 4561 GCUU|A|CCG GUACUAAUC- GUUCGAUUG| GCUUGA-UUG C-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS A.vitis 4759 bp RNA RNA 11-JAN-191 DEFINITION Agrobacterium vitis. ACCESSION No information KEYWORDS No information. SOURCE Agrobacterium vitis. ORGANISM Agrobacterium vitis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U28505 LOCUS AVU28505 7534 bp DNA BCT 02-JAN-1996 DEFINITION Agrobacterium vitis ribosomal RNA operon 16S ribosomal RNA, 23S ribosomal RNA, 5S ribosomal RNA, tRNA-Ile, tRNA-Ala, and tRNA-fMet genes, complete sequence. ACCESSION U28505 NID g1143912 KEYWORDS . SOURCE Agrobacterium vitis. ORGANISM Agrobacterium vitis Eubacteria; Proteobacteria; alpha subdivision; Rhizobiaceae; Agrobacterium. REFERENCE 1 (bases 1 to 7534) AUTHORS Otten,L., De,Ruffray,P., de,Lajudie,P. and Michot,B. TITLE Sequence and characterization of a ribosomal RNA operon from Agrobacterium vitis JOURNAL Unpublished REFERENCE 2 (bases 1 to 7534) AUTHORS Otten,L., De,Ruffray,P., de,Lajudie,P. and Michot,B. TITLE Direct Submission JOURNAL Submitted (07-JUN-1995) Leon Otten, Institute of Plant Molecular Biology, Rue Du General Zimmer 12, Strasburg, France COMMENT NCBI gi: 1143912 FEATURES Location/Qualifiers source 1..7534 /organism="Agrobacterium vitis" /strain="S4" repeat_region 621..647 /note="inverted repeat" rRNA 800..2359 /product="16S ribosomal rRNA" repeat_region 2541..2567 /note="inverted repeat" tRNA 2754..2830 /anticodon=(pos:unspecified,aa:Ile) /product="tRNA-Ile" tRNA 2914..2990 /anticodon=(pos:unspecified,aa:Ala) /product="tRNA-Ala" rRNA 3633..6574 /product="23S ribosomal RNA" rRNA 6805..6923 /product="5S ribsomal RNA" tRNA 7041..7165 /anticodon=(pos:unspecified,aa:Met) /product="tRNA-fMet" terminator 7147..7165 BASE COUNT 1886 a 1725 c 2219 g 1703 t 1 others ORIGIN BASE COUNT 791 a 650 c 891 g 610 t 1817 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- ---------A UUAAGUGGA- A-UAAGGGCA UUUGGUGGAU 121 G|CCUUGG|C AUGCAC|AG| GC-GAUGAAG GA|CGUG(AU AC-GC-)U|- GCG-AUAAGC 181 CGUGGG|-GA GCU(G-CG-A AUA-)AGCUU UG-AUC-CAU GGAUU|UCCG AAUGGG(GAA 241 A)CCC|ACCU U---(agaua ucuagaaaau cuguuuugcu agaccaaucu guuuugaccg 301 guuguguggg acgucccaua cagaccggua ggccgucgcc aagcguuugg cgcaccgucu 361 guagcgcagg cucgaagagc cgacagcgug aagacaaaac aaaccccgag uguggggcga 421 ua-ggguucg gcaaaagagg uuucuagaua ucgcaaau)- --AAGGU-AU CU-UACCUU( 481 GA-AUACA-- UA)GGG-GUA -A-G--AAG- C-GAAC|UC- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCG AAGGAAAGGA CAUC(-AACC --)GAGAC|U CC-GCAAGUA GU(GGCGA)G 601 CGA-ACG-CG GA-CCA-GGC C--------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- aguggcaaug aggaauaa-a gcgGAAc-aa g-u(u-ggaa a)g-cuuggc 781 |c(aua)guG GG(UGACAGC )CCCGU-Acg c-guagaaca cucauuguc- ---------- 841 ---------- ---------- -----cuaGA GUAGGGCGGG A(CACGUG-A AA)UCCUGUU 901 CGAACAU-GG G-GA(GACCA C)UC-UCC-A AGCCUAA--- -GUACUCGUG CAUGACCGAU 961 AGCG-AAC-A AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GAC AA-)GGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCGG-AUGCC UACAA-A-CA GUAGGAGGGC ---------- 1081 --------(- ---gaaa--) ---------- -------GCC UGACUGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAACGAC UUAG-UGUA- ACUAGC-AAG CUUAAGCC-( -G-GUA)-GG 1201 U-GUAGGCGC AGC(GAAA-) GCGAGUGU(U AA-UA)GCGC Ga-------- ---------- 1261 ---------- -----uu-ga G-UUAGUUGC AUUA-GACCC GAAAC-CGA- GUGA-UCUAG 1321 CCAUGAG|CA GGUUGAAGGU UGGG(UAAC) AC-CAACUGG AGGACCGAAC C-CGCAUCU( 1381 -GUUGCAAU) AGAUU|GGG- AUGAC-UUGU GGUUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 CGGAAAUAGC UGGUUCUCCG CGAAAACUAU (-UUAG)GUA GUGC|-GUCG AUcga---A| 1501 -UAC|CUCAG G|GGGUAG|A GC-ACUGG-A UGGGCUA-UG |-GGGAC(uc acc)GUCUUA 1561 CUGAUCCUAA -CCAAACUCC GAA-UA-|CC U-G-A-G--A GUAC----U| AAU-CGGCAG 1621 ACACAC--GG C-GGGU(GCU AAC)GUCCGU -CGUG-AAGA GGG(-CAACA A-)CCCUGAC 1681 CUCCAGCUAA G-GU|CCCC- AAGUC-AUGG -C-UAA-GUG ------GGAA AGGAUGUG-A 1741 GGAUCCCAA- AACAACCAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAA 1801 AGC(GUAACA )GC|UCACUG GUcuaaauAA GG-GUC-UU- -UGC|GCCGA AAAU-GUAA- 1861 CGGGGCUAAA GCCAU-G|C| ACCGAAGCU| GAGG|augug cac----(gu aa-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -guguacgu- GG-UAGCGGA G|-----CGU 2221 U-CCG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCUG-U 2341 GAAGGGACA- G-UC(-GUGA -)GAC--AUC CUGG|AGGUA U-CGGAAGUG CGAAUGU-UG 2401 AC|AUG-AGU A--ACGAUAA AGGGGG(UGA GAGA)CCCCC U|CGCC-GAA AGACCAAGGG 2461 UUCCUG-CUU AAAG-(UUAA U)CU|G-AGC AGGGUUAGC| CGG|c-CCCU AAGGCGAGGC 2521 A(GAAA)-U- GCGU-AGUCG AUGG-GAACC ACG-(UU-AA UAUU)C-GUG G|GC|cu-g- 2581 gu-ggu---- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------a g--uga-cgg au--cacaca aauu-g-|ua c-agu(cuua 2761 cuggau-ug- --)au-ugug -|-------- ---------- ---------- ---------- 2821 ---------- ----(----- ---)--|--- ---------- ---------- ---------- 2881 --------|- ---|------ ---------- -(-------) ---------- ---------- 2941 ---cagu-gg agug-----| guuccaggaa a-ua------ ---------- -----gcu-c 3001 caccgu-aua g|a|CCGUAC CCGAAACC(G ACACA)GG|U GG-UCAGGU- A-(GAGUA)U 3061 ACCAAGGCGC ||UUGAGAGA ACUAUGUUG- ---------- ----AAGGAA CUCGGCAAAU 3121 UGCACGCGUA AC(-UUCG)G AAGAAGCGUG |ACCCCU--- -uuu------ --------ua 3181 c(-gcaa-)g ug-------- ------gag- --AGGGG-U| G(GCA)CAGA CCAGGGG-GU 3241 AG|CGACU-- ---GU(UUAU CAAAA)ACAC AGGGCUCUG| CGAAGUC(GC AA------)G 3301 ACGACGU-AU AGGGUCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAAA GGAGAG---- 3361 GU-------- (G-CAA)--- --------GC ------UUUG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-CUUCCCC GCUGUCUCCA ACAUAGACUC 3541 A|GUGAAAUU |GAAUUCC-C CG(UGAAGAU G)CGGGGUUC CUGCGGU-CA GACGGAAAGA 3601 CCCCGUGC|A CCU-UUACUA U|AGCUUUAC ACU|GGCAUU CGUGUCGGCA UGUGUAGGAU 3661 AGGUGGUAGG CUUUGAAG-- CUUGGAC(GC CA)GUUCGAG UGGAGCCAUC -C-UUGAAAU 3721 ACCACC|CUU A-UCGUcAUG GAU-GUCUAA -CCGCGG--- -UCCG(--UU -AUC)-CGGA 3781 UCCGG-GACA GUGUAUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|GCCUC C(GAA-AGAG 3841 UAAC)GGAGG C|G|C|GCGA UGGUGGGC|U CAGACCGG(U CGGAAA)UCG GUCGUC-GA| 3901 GU(G|CAAUG )GCAUAAGCC CGCCUGACUG CGAGAC(UGA CAA)GUCGAG CAGAGAC(GA 3961 AA)GU-CGGU |CAUAGUGAU CCGGUGGUCC CG(CGUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CGC|CGGG|G AUAACAG|GC UGA--UGACC CCCAAGA(G- UCC-AUA)UC 4081 GACGGGG-UU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GGAG 4141 C---A)-GGU CCCAAGGGU| UUGGC(UGUU C)GC-CAAUU AAAGCGGUAC G-UGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|UG-UAG 4261 GAAUAUU|GA -|CAGGAUC- UGU------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACA UAUCUCUGGU GGACCUGU|U GUCGU(GC-C A-)ACGGCA- UAGCAGGGUA 4381 GCU-AUAUAU GGAAUGGAUA ACCGCU(GAA GGCAUCUA)A GCGGGAAACC AACCUG|AAA 4441 ACGAGUAUUC C|CU|----- -(------)- -------AU- CAGA|-GC|C GUGG-(AAGA 4501 CG-A)CCACG -UUGAUAG|G ACGG|GUGUG -GAAGCAGG- -(GUAA-)-- CCUGC|GA-A 4561 GCUU|A|CCG UUACUAAUA- GCUCGAUUG| GCUUAA-UCG U-------|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS B.bacillif 4759 bp RNA RNA 11-JAN-191 DEFINITION Bartonella bacilliformis str. strain KC584. ACCESSION No information KEYWORDS No information. SOURCE Bartonella bacilliformis str. strain KC584. ORGANISM Bartonella bacilliformis. REFERENCE 1 (bases 1 to 2882) AUTHORS Minnick,M.F. and Mitchell,S.J. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: L39095 LOCUS BAORG23S 2821 bp ds-DNA BCT 25-JAN-1995 DEFINITION Bartonella bacilliformis 23S ribosomal RNA (23S rRNA) gene. ACCESSION L39095 KEYWORDS 23S ribosomal RNA. SOURCE Bartonella bacilliformis (strain KC584) DNA. ORGANISM Bartonella bacilliformis Prokaryotae; Gracilicutes; Scotobacteria; Rickettsias; Bartonellaceae. REFERENCE 1 (bases 1 to 2821) AUTHORS Minnick,M.F. and Mitchell,S.J. TITLE Nucleotide sequence of the 23S ribosomal RNA gene of Bartonella bacilliformis JOURNAL Unpublished (1995) STANDARD full automatic COMMENT NCBI gi: 639635 FEATURES Location/Qualifiers source 1..2821 /organism="Bartonella bacilliformis" /strain="KC584" /sequenced_mol="DNA" rRNA 1..2821 /gene="23S rRNA" /product="23S ribosomal RNA" misc_feature 1..41 /note="Sequence previously reported in GENBANK accession # L26364; putative" misc_feature 2776..2821 /note="Sequence previously reported in GENBANK accession # L08503; putative" BASE COUNT 767 a 601 c 829 g 624 t ORIGIN BASE COUNT 767 a 601 c 829 g 624 t 1938 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- ---------A UCAAGUGUC- U-UAAGGGCA UUUGGUGGAU 121 G|CCUUGG|C AUGCAC|AG| GC-GAUGAAG GA|CGUG(AU AC-GC-)U|- GCG-AUAAGC 181 UACGGG|-GA GGU(G-CG-A AUA-)CCCUU UG-AUC-CGU AGAUU|UCCG AAUGGG(GCA 241 A)CCC|ACCU U---(ugacu gcuggaaacg uuaagcuguu uu-------- ---------- 301 ---------- ---------- ----(gcaa) aagacaguuu agguuucuag uugucu---- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uuaau)- --AAGGU-AU CU-UCAUCU( 481 GA-AUAaaa- UA)GGG-UGU -aaG--AAG- C-GAAC|GC- AGGGAACU|G A(AACA)UCU 541 AAGUA-CCUG UAGGAAAGGA CAUC(-AACC --)GAGAC|U CC-GUUAGUA GU(GGCGA)G 601 CGA-ACG-CG GA-CCA-GGC C--------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- aguggcuuaa auuuagaaaa guaGAAu-cg a-u(u-ggaa a)g-ucgaac 781 |c(aaa)gaG GG(UGAUAGU )CCCGU-Aua c-guaaaucu gauuuaaguc ---------- 841 ---------- ---------- -----cuuGA GUAAGGCGGG A(CACGUG-A AA)UCCUGUC 901 UGAACAU-GG G-UC(GACCA C)GA-UCC-A AGCCUAA--- -GUACUCGUG CAUGACCGAU 961 AGCG-CAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G UACCCC(GAC GA-)GGGGA- 1021 -GUGAAA-UA GUACCUGAAA CCGA-AUGCC UACAA-A-CA GUCGGAGCCC -aag-a---- 1081 --------(- --uuugu--) ---------- ---ucu-GGG UGACGGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAG-UCUA- ACGAGC-AAG CUUAAGCC-( -G-AUA)-GG 1201 U-GUAGGCGU AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC GU-------- ---------- 1261 ---------- ------u-ca G-UUCGUUGG AUUA-GACCC GAAAC-CGA- GUGA-UCUAG 1321 CCAUGAG|CA GGCUGAAGGU AAGG(UAAC) AC-UUACUGG AGGGCCGAAC C-CGUAUCU( 1381 -GUUGCAAU) AGAUU|GGG- AUGAC-UUGU GGCUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 CGGAAAUAGC UGGUUCUCCG CGAAAUCUAU (-UUAG)GUA GAGC|-GUUA GUUGA---A| 1501 -UUC|UCCAG G|GGGUAG|A GC-ACUGG-A UGGGCUA-GG |-GGUCC(uc acc)GGAUUA 1561 CCAAACCUAA -CCAAACUCC GAA-UA-|CC U-G-G-A--A GAAC----U| GAC-UGGCAG 1621 ACACAC--GG C-GGGU(GCU AAC)GUCCGU -CGUG-GAAA GGG(-CAACA A-)CCCUAAC 1681 CACCAUCUAA G-GU|CCCC- AAGUU-AUGG -C-UAA-GUG ------GGAA AGGAUGUG-A 1741 GGAUCCCAA- AACAACCAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAA 1801 AGC(GUAACA )GC|UCACUG GUcuaaaUAA GG-GUC-UU- -UGC|GCCGA AAAU-GUAA- 1861 CGGGGCUAAA GCCAU-A|C| ACCGAAGCU| GUGG|auuua cuc----(uu au-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -gaguaagu- GG-UAGCGGA G|-----CGU 2221 U-CCG-UAAg ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --C-CUGU-G 2341 AAGGGAG-A- C-UC(-GCGA -)GAG--CUC CUGG|AGGUA U-CGGAAGUG AGAAUGC-UG 2401 AC|AUG-AGU A--ACGAUAA AGGGAG(UGA GAGA)CUCCC U|CGCC-GAA AGUCCAAGGG 2461 UUCCUG-CUU AAAG-(UUAA U)CU|G-AGC AGGGUGAGU| CGG|C-CCCU AAGGCGAGGC 2521 C(GAAA)-G- GCGU-AGUCG AUGG-GAACC ACG-(UU-AA UAUU)C-GUG G|AC|cu-g- 2581 ug-gga---- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------a g--uga-cgg au-uaggaa- uauu-g-|ua a-ggu(cuua 2761 uuggau-ug- --)au-cuug -|-------- ---------- ---------- ---------- 2821 ---------- ----(----- ---)--|--- ---------- ---------- ---------- 2881 --------|- ---|------ ---------- -(-------) ---------- ---------- 2941 ---cagu-ag aaua-----| aucccaggaa a-uagc---- ---------- ---------u 3001 cccacauaua g|a|CCGUAC CCGAAACC(G ACACA)GG|U GG-ACAGGU- A-(GAGAA)U 3061 ACCAAGGCGC ||UUGAGAGA ACUACGUUG- ---------- ----AAGGAA CUCGGCAAAU 3121 UGCACGCGUA AC(-UUCG)G AAGAAGCGUG |accc----- -uuu------ ------agcg 3181 g(-gcaa-)c cguu------ ------aga- ----ggg-U| G(GCA)CAGA CCAGGGG-GU 3241 AG|CGACU-- ---GU(UUAC CAAAA)ACAC AGGGCUCUG| CGAAGUC(GC AA------)G 3301 ACGAUGU-AU AGGGUCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGAU---- 3361 GU-------- (G-CAA)--- --------GC ------AUUG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-CUUCCCC GCUGUCUCCA ACGUAGACUC 3541 A|GUGAAAUU |GAAUUCCCC CG(UGAAGAU G)CGGGGUUC CUGCGGU-UA GACGGAAAGA 3601 CCCCGUGC|A CCU-UUACUA U|AGCUUUAC ACU|GGCAUU UGUGUCGGCA UGUGUAGGAU 3661 AGGUGGUAGA CUUUGAAG-- CAGGGGC(GC UA)GCCCUUG UGGAGUCAUC -C-UUGAAAU 3721 ACCACC|CUU A-CCGACAUG GAU-GUCUAA -CUGCAG--- -UCCG(--UU -AUC)-CGGA 3781 UUCAA-GACA GUGUAUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AGAG 3841 UAAC)GGAGG C|G|C|GCGA AGGUAGGC|U CAGAACGG(U CGGAAA)UCG UUUGUU-GA| 3901 GU(G|CAAUG )GCAUAAGCC UGCCUGACUG UGAGAC(UGA CAA)GUCGAG CAGAGUC(GA 3961 AA)GA-CGGU |CAUAGUGAU CCGGUGGUCC CG(UGUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CGC|CGGG|G AUAACAG|GC UGA--UGACC CCCAAGA(G- UCC-AUA)UC 4081 GACGGGG-UU GU-UUGGCAC CUCGAUGUC| GACU|C|AUC GC|AUCC|UG GGGCU(GGAG 4141 C---A)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGCGGUAC G-UGAGUUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|UG-UAG 4261 GAAUAUU|GA -|CAGGAUC- UGU------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACG UAUCUCUGGU GGACCUGU|U GUGGC(GC-C A-)GCCGCA- UAGCAGGGUA 4381 GCU-AUAUAC GGACGGGAUA ACCGCU(GAA GGCAUCUA)A GCGGGAAACC CACCUG|AAA 4441 ACGAGUAUUC C|CU|----- -(------)- --------U- GAGA|-AC|C GUGG-(UAGA 4501 CC-A)CCACG -UUGAUAG|G UCAG|GCGUG -GAAGUGUG- -(GUAA-)-- CACAU|GA-A 4561 GCUU|A|CUG AUACUAAUA- GUUCGAUUG| GCUUGA-UCG U-------|u cucauu]u~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS Z.ramigera 4759 bp RNA RNA 03-JUL-1997 DEFINITION Zoogloea ramigera.; 23S ribosomal RNA; 23S rRNA gene. ACCESSION X88894 KEYWORDS 23S ribosomal RNA; 23S rRNA gene. SOURCE Zoogloea ramigera. ORGANISM Zoogloea ramigera. REFERENCE 1 (bases 1 to 2812) AUTHORS Bachleitner,M., Klugbauer,N., Springer,N., Lane,D., Nietupsky ,R., Weizenegger,M. and Schleifer,K.H. Ludwig,W., Rossello-Mora,R., Aznar,R., Klugbauer,S., Spring,S ., Reetz,K., Beimfohr,C., Brockmann,E., Kirchhof,G., Dorn,S., TITLE Comparative sequence analysis of 23S rRNA from proteobacteria JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2812) AUTHORS Ludwig,W. TITLE Direct Submission JOURNAL Submitted (21-JUN-1995) W. Ludwig, Lehrstuhl fuer Mikrobiologie, Technische Universitaet Muenchen, Muenchen, FRG STANDARD No information REFERENCE 3 (bases 1 to 2812) AUTHORS Ludwig,W., Rossello-Mora,R., Aznar,R., Klugbauer,S., Spring,S., Reetz,K., Beimfohr,C., Brockmann,E., Kirchhof,G. , Dorn,S., Bachleitner,M., Klugbauer,N., Springer,N., Lane, D., Nietupsky,R., Weizenegger,M. and Schleifer,K.H. TITLE Comparative sequence analysis of 23S rRNA from proteobacteria JOURNAL Syst. Appl. Microbiol. 18, 164-188 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X88894 BASE COUNT 734 a 631 c 867 g 580 t 1947 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- -ugagaacGA UUAAGUgucg --UAAGGGCA AUUGGUGGAU 121 G|CCUUGG|C AUGCAC|AG| GC-GAUGAAG GA|CGUG(AU AC-GC-)U|- GCG-AUAAGC 181 CGUGGG|-GA GCU(G-CG-A AUG-)AGCUU UG-AUC-CAU GGAUU|UCCG AAUGGG(GAA 241 A)CCC|ACCU UA--(aaugc uuggagaauu uaaguugcuc ---------- ---------- 301 ---------- ---------- ----(guaa) gggcggcuua gguuuccaag cauu------ 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----gaaa)- -UAAGGU-AU CUUACUUUC( 481 GA-AUACA-- UA)GGG-GUA -a-g--aaG- C-GAAC|GC- AGGGAACU|G A(AACA)UCU 541 AAGUA-CCUG CAGGAAAGGA CAUC(-AACC --)GAGAC|U CC-GCAAGUA GU(GGCGA)G 601 CGA-ACG-CG GA-CCA-GGC C--------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- -aguggcaau gcugaauaaa gugGAAc-gg a-a(u-ggaa a)g-uccgGC 781 |C(UUA)GCG GG(UGAUAGC )CCCGU-Aca c-guagaaca ggcauuguc- ---------- 841 ---------- ---------- -----cuuGA GUAGGGCGGG A(CACGUG-A AA)UCCUGUC 901 UGAACAU-GG G-GA(GACCA C)UC-UCC-A AGCCUAA--- -GUACUCGUG CAUGACCGAU 961 AGCG-AAC-A AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GAC AA-)GGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCGG-UUGCC UACAA-G-CA GUCGGAGGCC ---------- 1081 --------(- ---gcaa--) ---------- -------ggC UGACGGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAACGAC UUAG-UGUA- ACUAGC-AAG CUUAAGCC-( -G-GUA)-GG 1201 U-GUAGGCGC AGC(GAAA-) GCGAGUCU(G AA-CA)GGGC GU-------- ---------- 1261 ---------- ------u-ca G-UUAGUUGC AUUA-GACCC GAAAC-CGA- GUGA-UCUAG 1321 CCAUGAG|CA GGUUGAAGGU UGGG(UAAC) AC-CAACUGG AGGACCGAAC C-CGCAUCU( 1381 -GUUGCAAU) AGAUU|GGG- AUGAC-UUGU GGCUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 CGGAGAUAGC UGGUUCUCCG CGAAAUCUAU (-UUAG)GUA GAGC|-GUCG Accga---A| 1501 -UAC|CCUCG G|GGGUAG|A GC-ACUGG-A UGGGCUA-UG |-GGGAC(uc acc)GUCUUA 1561 CUGAUCCUAA -CCAAACUCC GAA-UA-|CC G-A-G-G--a guac----u| agu-CGGCAG 1621 ACACAC--GG C-GGGU(GCU AAC)GUCCGU -CGUG-AAAA GGG(-CAACA A-)CCCUGAC 1681 CUCCAGCUAA G-GU|CCCC- AAGUC-AUGG -C-UAA-GUG ------GGAA AGGAUGUG-A 1741 GACUCCCAA- AACAACCAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAA 1801 AGC(GUAACA )GC|UCACUG GUcuaauUAA GG-GGU-UU- -UGC|GCCGA AAAU-GUAA- 1861 CGGGGCUAAA GCCAU-G|C| ACCGAAGCU| GAGG|auugg ac-----(gc aa-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --guccagu- GG-UAGCGGA G|-----CGU 2221 U-CCG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCUG-C 2341 GAAGGAG-G- ACCC(-GUGA -)GG---CCU CUGG|AGGUA U-CGGAAGUG CGAAUGU-UG 2401 AC|AUG-AGU A--ACGAUAA AGGGAG(UGA GAGA)CUCCC U|CGCC-GAA AGACCAAGGG 2461 UUCCUG-CUU AAAG-(UUAA U)CU|G-AGC AGGGUUAGC| CGG|C-CCCU AAGACGAGGC 2521 G(GACA)-C- GCGU-AGUCG AUGG-GAACC ACG-(UU-AA UAUU)C-GUG G|GC|cu-g- 2581 gu-ggu-a-- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---------- ---------- g--uga-cgg au--ugcgua acuu-g-|uu c-auc(cuua 2761 uuggau-ug- --)gg-uggg -|-------- ---------- ---------- ---------- 2821 ---------- ----(----- ---)--|--- ---------- ---------- ---------- 2881 --------|- ---|------ ---------- -(-------) ---------- ---------- 2941 ---cagg-ga agcg-----| guuccaggaa a-uagc---- ---------- ---------u 3001 ccaccguaua g|a|CCGUAC CCGAAACC(G ACACA)GG|U GG-UCAGGU- A-(GAGCA)U 3061 ACCAAGGCGC ||UUGAGAGA ACUGCGUUG- ---------- ----AAGGAA CUCGGCAAAU 3121 UGCACGCGUA AC(-UUCG)G AAGAAGCGUG |accc----- -caa------ ------ggca 3181 c(-gcaa-)g uguu------ ------uug- ----ggg-U| G(GCA)CAGA CCAGGGG-GU 3241 AG|CGACU-- ---GU(UUAU CAAAA)ACAC AGGGCUCUG| CGAAGUC(GC AA------)G 3301 ACGACGU-AU AGGGUCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGAG---- 3361 GU-------- (G-CAA)--- --------GC ------UUUG AAUCGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-CUUCCCC GCUGUCUCCA ACGCAGACUC 3541 A|GUGAAAUU |GAAUUCC-C CG(UGAAGAU G)CGGGGUUC CUGCGGU-UA GACGGAAAGA 3601 CCCCGUGC|A CCU-UUACUA U|AGCUUUAC ACU|GGCAUU CGUGUCGGCA UGUGUAGGAU 3661 AGGUGGUAGG CUUUGAAG-- CAGGGAC(GC CA)GUUUCUG UGGAGCCAUC -C-UUGAAAU 3721 ACCACC|CUU A-UCGUCAUG GAU-GUCUAA -CCGCGG--- -UCCG(--UU -AUC)-CGGA 3781 UCCGG-GACC GUGUAUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|GCCUC C(GAA-AGAG 3841 UAAC)GGAGG C|G|C|GCGA UGGUGGGC|U CAGACCGG(U CGGAAA)UCG GUCGUC-GA| 3901 GU(G|CAAUG )GCAUAAGCC CGCCUGACUG CGAGAC(UGA CAA)GUCGAG CAGAGAC(GA 3961 AA)GU-CGGU |CAUAGUGAU CCGGUGGUCC CG(CGUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CGC|CGGG|G AUAACAG|GC UGA--UGACC CCCAAGA(G- UCC-AUA)UC 4081 GACGGGG-UU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GGAG 4141 C---A)-GGU CCCAAGGGU| UUGGC(UGUU C)GC-CAAUU AAAGCGGUAC G-UGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|UG-UAG 4261 GAAUAUU|GA -|CAGGAUC- UGU------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACA UAUCUCUGGU GGACCUGU|U GUCCU(GC-C A-)AGGGCA- UAGCAGGGUA 4381 GCU-AUAUAU GGAAUGGAUA ACCGCU(GAA GGCAUCUA)A GCGGGAAACC AACCUG|AAA 4441 ACGAGUAUUC C|CU|----- -(------)- --------U- GAGA|-GC|C GUGG-(AAGA 4501 CG-A)CCACG -UUGAUAG|G CCGG|GUGUG -GAAGCGCA- -(GCAA-)-- UGUGU|GA-A 4561 GCUU|A|CCG GUACUAAUA- GCUCGAUUG| GCUUGA-UCG U-------|u cucauugu-- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS PURPLE.BET 4759 bp RNA RNA 17-JAN-1993 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 4759 others ORIGIN 1 -x~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~-)~|- ~~~~~~~~~~ 181 ~~~~~~|-~~ ~~~(~-~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~--- ---------- ---------- 301 -----~~~~~ ~~~~~~~~~~ ~~~~~~---- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- -----~-~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~- ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~| ~~~-~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- 721 ---~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~-~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~-- -~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ -~~~-~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| -~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 -~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 -~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~-~ ~~~~~~~~~~ |-~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~-~~~~| ~~~~~~~~~~ 1621 ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~-~~~~~ ~-~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~-~~~ ~----~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~-~- -~~-|~~~~~ ~~~~-~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~|-----~~~ 2221 ~-~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~- ~-~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 2401 ~~|~~~~-~~ ~-~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~-~~ ~~~~~~-~~~ ~~~~|~~~~- 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~------~~~ ~~--~~-~~~ ~~~~~~~~~- ~~~~-~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ---------- --~~~~~~~~ ~~~~~~~~-- 2821 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~----~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 --~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~-~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~- ---~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~---~~~~~ 3301 ~~~~~~~~-~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~-~~ ~-~~-~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~( ~~~)~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ 3721 ~~~~~~|~~~ ~~~-~~~~~~ ~~~~~-~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~-~~-~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~|~|~|~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~---~ ~~~~~~-~~~ 3901 ~|~~(~|~~~ ~~)~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~-~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~~~|~~~~ ~~~~~~~~~| 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4381 ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~|| ||~|||||| // LOCUS N.meningit 4759 bp RNA RNA 11-JAN-191 DEFINITION Neisseria meningitidis. ACCESSION No information KEYWORDS No information. SOURCE Neisseria meningitidis. ORGANISM Neisseria meningitidis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X67300 ID NM23SRRNA standard; DNA; PRO; 2890 BP. XX AC X67300; XX DT 21-OCT-1992 (Rel. 33, Created) DT 21-OCT-1992 (Rel. 33, Last updated, Version 2) XX DE N.meningitidis gene for 23S rRNA XX KW 23S ribosomal RNA; ribosomal RNA. XX OS Neisseria meningitidis OC Prokaryota; Bacteria; Gracilicutes; Scotobacteria; OC Aerobic rods and cocci; Neisseriaceae. XX RN [1] RP 1-2890 RA Wolff K.; RT ; RL Submitted (15-JUL-1992) on tape to the EMBL Data Library by: RL K. Wolff, Boehringer Mannheim GmbH, Nonnenwald 2, 8122 Penzberg, RL FRG XX RN [2] RP 1-2890 RA Wolff K., Sperka S., Stern A.; RT "Phylogeny and nucleotide sequence of a 23S rRNA gene from RT Neisseria gonorrhoeae and Neisseria meningitidis"; RL Nucleic Acids Res. 20:4657-4657(1992). XX CC *source: strain=ssp serotype D, strain 3-1; CC *source: clone=23S-2, 23S-9, 23S-16, 23S-23; CC *source: isolate=1941; XX FH Key Location/Qualifiers FH FT rRNA 1..2890 FT /product="23S ribosomal RNA" XX SQ Sequence 2890 BP; 792 A; 619 C; 875 G; 604 T; 0 other; N.meningitidis agtcaagtgaataagtgcatcaggtggatgccttggcgatgataggcgacgaaggacgtg BASE COUNT 792 a 619 c 875 g 604 t 1869 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------AG UCAAGUGAA- --UAAGUGCA UCAGGUGGAU 121 G|CCUUGG|C GAUGAU|AG| GC-GACGAAG GA|CGUG(UA AG-CC-)U|- GCG-AAAAGC 181 GCGGGG|-GA GCU(G-GCAA UAA-)AGCAA UG-AUC-CCG CGAUG|UCCG AAUGGG(GAA 241 A)CCC|acug ca--(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uucug)- -ugcagu-AU CC-UAAGUU( 481 GA-AUACA-- UA)GAC-UUA -GAG--AAG- C-GAAC|CC- GGAGAACU|G A(ACCA)UCU 541 AAGUA-CCCG GAGGAAAAGA AAUC(-AACC --)GAGAU|U CC-GCAAGUA GU(GGCGA)G 601 CGA-ACG-CG GA-GGA-GCC U--------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ------guac gu-aauaacu gucgagau-a gaaGAAc-aa g-c(u-ggga a)g-cuugAC 781 |c(aua)guG GG(UGACAGU )CCCGU-Auu c-gaaaucuc aac-agcggu acuaagcgua 841 c--------- ---------- -----GAAAA GUAGGGCGGG A(CACGUG-A AA)UCCUGUC 901 UGAAUAU-GG G-GG(GACCA U)CC-UCC-A AGGCUAA--- -AUACUCAUC AUCGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGCGAAAA-G AACCCC(GG- GA-)GGGAA- 1021 -GUGAAA-CA GAACCUGAAA CCUG-AUGCA UACAA-A-CA GUGGGAGCGC --C------- 1081 --------(- ---cuaga-) ---------- -----G-GUG UGACUGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAACGAC UUAC-AUUC- AGUAGC-GAG CUUAACC--( -GAAUA)--G 1201 G-GGAGGCGU AGG(GAAA-) CCGAGUCU(U AA-UA)GGGC GA-------- ---------- 1261 ---------- ------u-ga G-UUGCUGGG UGUA-GACCC GAAAC-CGA- GUGA-UCUAU 1321 CCAUGGC|CA GGUUGAAGGU GCCG(UAAC) AG-GUACUGG AGGACCGAAC C-CACGCAU( 1381 -GUUGCAAA) AUGCG|GGG- AUGAG-CUGU GGAUAGGGGU (-GAAAG)GC UAAACAAACU 1441 CGGAGAUAGC UGGUUCUCCC CGAAAACUAU (-UUAG)GUA GUGC|-CUCG Agcaag--A| 1501 -CAC|UGAUG G|GGGUAA|A GC-ACUGU-U AUGGCUA-GG |-GGGUU(au ugc)AACUUA 1561 CCAACCCAUG -GCAAACUCA GAA-UA-|CC A-U-C-A--A GUGG---UU| CCU-CGGGAG 1621 ACAGAC--AG C-GGGU(GCU AAC)GUCCGU -UGUC-AAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCC- AAUGA-UAGA -U-UAA-GUG ------GUAA ACGAAGUG-G 1741 GAAGGCCCA- GACAGCCAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG GU-----CGA GU-CGU-CC- -UGC|GCGGA AGAU-GUAA- 1861 CGGGGCUCAA AUCUA-U|A| ACCGAAGCU| GCGG|augcc ag-----(uu ua-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --cuggcau- GG-UAGGGGA G|-----CGU 2221 U-CUG-UAG- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCGA-U 2341 GAAGGUG-C- A-UU(-GUAA -)AGU--GUG CUGG|AGGUA U-CAGAAGUG CGAAUGU-UG 2401 AC|AUG-AGU A--GCGAUAA AGCGGG(UGA AAAG)CCCGC U|CGCC-GAA AGCCCAAGGU 2461 UUCCUA-CGC AACG-(UUCA U)CG|G-CGU AGGGUGAGU| CGG|C-CCCU AAGGCGAGGC 2521 A(GAAA)-U- GCGU-AGUCG AUGG-GAAAC AGG-(UU-AA UAUU)C-CUG U|AC|uu-g- 2581 au-uca-aau ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga u------gug g--gga-cgg agaagguua- gguu-g-|gc a-agc(ug-- 2761 uuggaa-ua- --)gc-uugu -|uuaa---- ---------- ---gccg-gu aggu------ 2821 -ggaaga-cu uagg(ca-aa -u-)cc|g-- ggucuucuu- --------aa cacc-gagaa 2881 gug-auga|c ga-|------ ------gugu c(-uacg--) gacau----- ------gaag 2941 --uaacc-ga uacc-acg-| cuuccaggaa a-agccac-u aagcuuca-- ------gu-u 3001 -ugaau--ug a|A|CCGUAC CCCAAACC(G ACACA)GG|U GG-GCAGGA- U-(GAGAA)U 3061 UCUAAGGCGC ||UUGAGAGA ACUCAGGAG- ---------- ----AAGGAA CUCGGCAAAU 3121 UGAUACCGUA AC(-UUCG)G GAGAAGGUAU |GCCCUcuaa -gguuaa--- --------gg 3181 a(-cuugc)u cc-------- -guaagccc- uggaggg-U| C(GCA)GAGA AUAGGUG-GC 3241 UG|CGACU-- ---GU(UUAU UAAAA)ACAC AGCACUCUG| CUAACAC(GA AA------)G 3301 UGGACGU-AU AGGGUGUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAUU GAAGAU---- 3361 GU-------- (G-AGA)--- --------GC ------AUCG GAUCGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AUGGCGUAAC GA-UGGCCAC ACUGUCUCCU CCUGAGACUC 3541 A|GCGAAGUU |GAAGUGG-U UG(UGAAGAU G)CAAUCUAC CCGCUGC-UA GACGGAAAGA 3601 CCCCGUGA|A CCU-UUACUG U|AGCUUUGC AUU|GGACUU UGAAGUCACU UGUGUAGGAU 3661 AGGUGGGAGG CUUUGAAG-- CAGAGAC(GC CA)GUCUCUG UGGAGCCGUC -C-UUGAAAU 3721 ACCACC|CUG G-UGUCUUUG AGG-UUCUAA -CCCAGA--- -CCCG(--UC -AUC)-CGGG 3781 UCGGG-GACC GUGCAUGGUA GG-CAGUUUG ACUG(GGG)C GGUC|UCCUC C(CAA-AGCG 3841 UAAC)GGAGG A|G|U|UCGA AGGUUACC|U AGGUCCGG(U CGGAAA)UCG GACUGA-UA| 3901 GU(G|CAAUG )GCAAAAGGU AGCUUAACUG CGAGAC(CGA CAA)GUCGAG CAGGUGC(GA 3961 AA)GC-AGGA |CAUAGUGAU CCGGUGGUUC UG(UAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UGA--UUCCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GA GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGUGGUAC G-UGAGCUGG 4201 GUUUA-AAAC |GUC(GUGA) -GACAGUU-U GGU-CCCUAU -CU|GCAGUG G--|CG-UUG 4261 GAAGUUU|GA -|CGGGG-C- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG AACCUCUGGU GUACCGGU|U GUAAC(GC-C A-)GUUGCA- UAGCCGGGUA 4381 GCU-AAGUUC GGAAGAGAUA AGCGCU(GAA AGCAUCUA)A GCGCGAAACU CGCCUG|AAG 4441 AUGAGACUUC C|CU|UGCGG U(-UUA--)A CCGCA-CUA- AAGA|-GU|C GUUC-(GAGA 4501 CC-A)GGACG -UUGAUAG|G UGGG|GUGUG -GAAGCGCG- -(GUAA-)-- CGCGU|GA-A 4561 GCUA|A|CCC AUACUAAUU- GCUCGUGAG| GCUUGA-CUC U-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS N.gonorrho 4759 bp RNA RNA 11-JAN-191 DEFINITION Neisseria gonorrhoeae. ACCESSION No information KEYWORDS No information. SOURCE Neisseria gonorrhoeae. ORGANISM Neisseria gonorrhoeae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X67293 ID NG23SRRNA standard; DNA; PRO; 2890 BP. XX AC X67293; XX DT 25-SEP-1992 (Rel. 33, Created) DT 25-SEP-1992 (Rel. 33, Last updated, Version 3) XX DE N.gonorrhoeae gene for 23S rRNA XX KW 23S ribosomal RNA; ribosomal RNA. XX OS Neisseria gonorrhoeae OC Prokaryota; Bacteria; Gracilicutes; Scotobacteria; OC Aerobic rods and cocci; Neisseriaceae. XX RN [1] RP 1-2890 RA Wolff K., Sperka S., Stern A.; RT "Phylogeny and nucleotide sequence of a 23S rRNA gene from RT Neisseria gonorrhoeae and Neisseria meningitidis"; RL Nucleic Acids Res. 20:4657-4657(1992). XX RN [2] RP 1-2890 RA Wolff K.; RT ; RL Submitted (15-JUL-1992) on tape to the EMBL Data Library by: RL K. Wolff, Boehringer Mannheim GmbH, Nonnenwald 2, 8122 Penzberg, RL FRG XX CC *source: strain=MS11; CC *source: clone=23S-1, 23S-8, 23S-15, 23S-22; XX FH Key Location/Qualifiers FH FT rRNA 1..2890 FT /product="23S ribosomal RNA" XX SQ Sequence 2890 BP; 783 A; 623 C; 884 G; 600 T; 0 other; BASE COUNT 783 a 623 c 884 g 600 t 1869 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UCAAGUGAA- --UAAGUGCA UCAGGCGGAU 121 G|CCUUGG|C GAUGAU|AG| GC-GACGAAG GA|CGUG(UA AG-CC-)U|- GCG-AAAAGC 181 GCGGGG|-GA GCU(G-GCAA UAA-)AGCUA UG-AUU-CCG CGAUG|UCCG AAUGGG(GAA 241 A)CCC|acug ca--(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uucug)- -ugcagu-AU CC-UAAGUU( 481 GA-AUACA-- UA)GGC-UUA -GAG--AAG- C-GAAC|CC- GGAGAACU|G A(ACCA)UCU 541 AAGUA-CCCG GAGGAAAAGA AAUC(-AACC --)GAGAU|U CC-GCAAGUA GU(GGCGA)G 601 CGA-ACG-CG GA-GGA-GCC U--------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ------guac gu-aauaacu gucgagau-a gaaGAAc-aa g-c(u-ggga a)g-cuugAC 781 |c(aua)gcG GG(UGACAGU )CCCGU-Auu c-gaaaucuc aac-agcggu acuaagcgua 841 c--------- ---------- -----GAAAA GUAGGGCGGG A(CACGUG-A AA)UCCUGUC 901 UGAAUAU-GG G-GG(GACCA U)CC-UCC-A AGGCUAA--- -AUACUCAUC AUCGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGCGAAAA-G AACCCC(GG- GA-)GGGAA- 1021 -GUGAAA-CA GAACCUGAAA CCUG-AUGCA UACAA-A-CA GUGGGAGCGC --C------- 1081 --------(- ---cuagu-) ---------- -----G-GUG UGACUGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAACGAC UUAC-AUUC- AGUAGC-GAG CUUAACC--( -GGAUA)--G 1201 G-GGAGGCGU AGG(GAAA-) CCGAGUCU(U AA-UA)GGGC GA-------- ---------- 1261 ---------- ------u-ga G-UUGCUGGG UGUA-GACCC GAAAC-CGA- GUGA-UCUAU 1321 CCAUGGU|CA GGUUGAAGGU GCCG(UAAC) AG-GUACUGG AGGACCGAAC C-CACGCAU( 1381 -GUUGCAAA) AUGCG|GGG- AUGAG-CUGU GGGUAGGGGU (-GAAAG)GC UAAACAAACU 1441 CGGAGAUAGC UGGUUCUCCC CGAAAACUAU (-UUAG)GUA GUGC|-CUCG Agcaag--A| 1501 -CAC|UGAUG G|GGGUAA|A GC-ACUGU-U AUGGCUA-GG |-GGGUU(au ugc)AACUUA 1561 CCAACCCAUG -GCAAACUCA GAA-UA-|CC A-U-C-A--A GUGG---UU| CCU-CGGGAG 1621 ACAGAC--AG C-GGGU(GCU AAC)GUCCGU -UGUC-AAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCGGCUAA G-GU|CCCA- AAUGA-UAGA -U-UAA-GUG ------GUAA ACGAAGUG-G 1741 GAAGGCACA- GACAGCCAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG GU-----CGA GU-CGU-CC- -UGC|GCGGA AGAU-GUAA- 1861 CGGGGCUCAA AUCUA-U|A| ACCGAAGCU| GCGG|augcc gg-----(uu ua-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --ccggcau- GG-UAGGGGA G|-----CGU 2221 U-CUG-UAG- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CUGA-U 2341 GAAGGUG-C- A-UU(-GUAA -)AGU--GUG CUGG|AGGUA U-CAGAAGUG CGAAUGU-UG 2401 AC|AUG-AGU A--GCGAUAA AGCGGG(UGA AAAG)CCCGC U|CGCC-GAA AGCCCAAGGU 2461 UUCCUA-CGC AACG-(UUCA U)CG|G-CGU AGGGUAAGU| CGG|c-CCCU AAGGCGAGGC 2521 A(GAAA)-U- GCGU-AGUCG AUGG-GAAAC AGG-(UU-AA UAUU)C-CUG U|AC|uu-g- 2581 au-uca-aau ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga u------gug g--gga-cgg agaagguua- gguu-g-|gc a-agc(ug-- 2761 uuggaa-ua- --)gc-uugu -|uuaa---- ---------- ---gccg-gu aggu------ 2821 -ggaaga-cu uagg(ca-aa -u-)cc|g-- gguuuucuu- --------aa cacc-gagaa 2881 gug-auga|c ga-|------ ------gugu c(-uacg--) gacac----- ------gaag 2941 --caacc-ga uacc-acg-| cuuccaggaa a-agccac-u aagcuuca-- ------gu-u 3001 -ugaau--cg a|A|CCGUAC CCCAAACC(G ACACA)GG|U GG-GUAGGA- U-(GAGAA)U 3061 UCUAAGGCGC ||UUGAGAGA ACUCGGGAG- ---------- ----AAGGAA CUCGGCAAAU 3121 UGAUACCGUA AC(-UUCG)G GAGAAGGUAU |GCCCUCuaa -gguuaa--- --------gg 3181 a(-cuugc)u cc-------- -guaagccc- cggaggg-U| C(GCA)GAGA AUAGGUG-GC 3241 UG|CGACU-- ---GU(UUAU UAAAA)ACAC AGCACUCUG| CCAACAC(GA AA------)G 3301 UGGACGU-AU AGGGUGUGA- CGCCUGCCCG GU|GCCG-GA A-GGUUAAUU GAAGAU---- 3361 GU-------- (G-CAA)--- --------GC ------AUCG GAUCGAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AUGGCGUAAC GA-UGGCCAC ACUGUCUCCU CCCGAGACUC 3541 A|GCGAAGUU |GAAGUGG-U UG(UGAAGAU G)CAAUCUAC CCGCUGC-UA GACGGAAAGA 3601 CCCCGUGA|A CCU-UUACUG U|AGCUUUGC AUU|GGACUU UGAAGUCACU UGUGUAGGAU 3661 AGGUGGGAGG CUUGGAAG-- CAGAGAC(GC CA)GUCUCUG UGGAGUCGUC -C-UUGAAAU 3721 ACCACC|CUG G-UGUCUUUG AGG-UUCUAA -CCCAGA--- -CCCG(--UC -AUC)-CGGG 3781 UCGGG-GACC GUGCAUGGUA GG-CAGUUUG ACUG(GGG)C GGUC|UCCUC C(CAA-AGCG 3841 UAAC)GGAGG A|G|U|UCGA AGGUUACC|U AGGUCCGG(U CGGAAA)UCG GACUGA-UA| 3901 GU(G|CAAUG )GCAAAAGGU AGCUUAACUG CGAGAC(CGA CAA)GUCGGG CAGGUGC(GA 3961 AA)GC-AGGA |CAUAGUGAU CCGGUGGUUC UG(UAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UGA--UUCCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GA GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGUGGUAC G-UGAGCUGG 4201 GUUUA-AAAC |GUC(GUGA) -GACAGUU-U GGU-CCCUAU -CU|GCAGUG G--|CG-UUG 4261 GAAGUUU|GA -|CGGGG-C- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG AACCUCUGGU GUACCGGU|U GUAAC(GC-C A-)GUUGCA- UAGCCGGGUA 4381 GCU-AAGUUC GGAAGAGAUA AGCGCU(GAA AGCAUCUA)A GCGCGAAACU CGCCUG|AAG 4441 AUGAGACUUC C|CU|UGCGG U(-UUA--)A CCGCA-CUA- AAGG|-GU|C GUUC-(GAGA 4501 CC-A)GGACG -UUGAUAG|G UGGG|GUGUG -GAAGCGCG- -(GUAA-)-- CGCGU|GA-A 4561 GCUA|A|CCC AUACUAAUU- GCCCGUGAG| GCUUGA-CUC U-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS R.picketti 4759 bp RNA RNA 02-JAN-1998 DEFINITION Ralstonia pickettii. str. PD1515 23S ribosomal RNA gene, partial sequence; . ACCESSION AF0124 1 KEYWORDS . SOURCE Ralstonia pickettii. str. PD1515 23S ribosomal RNA gene, partial sequence. ORGANISM Ralstonia pickettii. REFERENCE 1 (bases 1 to 2816) AUTHORS Wullings,B.A., Van Beuningen,A.R., Janse,J.D. and Akkermans,A .D.L. TITLE FISH detection of the brownrot causing Ralstonia Solanacearum using 23S rRNA-targeted probes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2816) AUTHORS Wullings,B.A. TITLE Direct Submission JOURNAL Submitted (07-JUL-1997) Microbiology, Wageningen Agricultural University, Hesselink van Suchtelenweg 4, Wageningen, - 6703 CT, The Netherlands STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: AF012421 BASE COUNT 732 a 601 c 883 g 598 t 1945 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UCAAGCGAA- --UAAGUGCA UGUGGUGGAU 121 G|CCUUGG|C GAUCAC|AG| GC-GAUGAAG GA|CGUA(GU AG-CC-)U|- GCG-AAAAGC 181 UGCGGG|-GA GCU(G-GCAA ACA-)AGCUU UG-AUC-CGC AGAUG|UCCG AAUGGG(GAA 241 A)CCC|ggcc c---(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----guau)- --ggguc-AU CU-GUUACU( 481 GA-AUACA-- UA)GGU-AAC -A-G--AAG- C-GAAC|GC- AGUGAACU|G A(AACA)UCU 541 AAGUA-GCUG CAGGAACAGA AAUC(-AACC --)GAGAU|U CC-CAAAGUA GU(GGCGA)G 601 CGA-AAU-GG Ga-ucA-GCC U--------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ------ugua cucuuuagca guauuguu-a gcaGAAc-gg a-a(u-ggaa a)g-uccggc 781 |c(aua)guG GG(UGAUAGC )CCCgu-aug c-gaaaacag uau-ugugga acuaggugua 841 c--------- ---------- -----GACAA GUAGGGCGGG A(CACGUG-A AA)UCCUGUC 901 UGAAGAU-GG G-GG(GACCA U)CC-UCC-A AGGCUAA--- -AUACUCGUG AUCGACC-GA 961 UAGU-GAAcc AGUACC(GUG A)-GGGA-AA GGCGAAAA-G AACCCC(GG- GA-)GGGGA- 1021 -GUGAAA-UA GAUCCUGAAA CCGC-AUGCA UACAA-A-CA GUCGGAGCCU --G------- 1081 --------(- ---gaaa--) ---------- -----C-GGG UGACGGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAC-AUUC- AGUGGC-AAG CUUAACC--( -GAUUA)--G 1201 G-GAAGGCGU AGC(GAAA-) GCGAGUCC(G AA-UA)GGGC GU-------- ---------- 1261 ---------- ------u-ca G-UCGCUGGG UGUA-GACCC GAAAC-CAA- GUGA-UCUAU 1321 CCAUGGC|CA GGUUGAAGGU GCGG(UAAC) AC-GUACUGG AGGACCGAAN C-CACUAAC( 1381 -GUUGAAAA) GUUAG|GGG- AUGAG-CUGU GGAUAGGGGU (-GAAAG)GC UAAACAAACU 1441 UGGAAAUAGC UGGUUCUCUC CGAAAACUAU (-UUAG)GUA GUGC|-CUCG UGUC----U| 1501 -CAC|CUUCG G|GGGUAG|A GC-ACUGUca UGGUUGG-GG |-GGUCU(AU UGC)UGAUUA 1561 CC-CCGCCAU aGCAAACUCC GAA-UA-|CC G-A-A-G--A GUGC---AA| UCA-CGGGAG 1621 ACAGAC--AU C-GGGU(GCU AAC)GUCCGG -UGUC-AAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCU- AAA-U-AUGG -C-UAA-GUG ------GGAA ACGAAGUG-G 1741 GAAGGCUAA- AACAGUCAGG AGGUUGGC(U UAGAAGCA)G CCAC-CCU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG AU-----CGA GU-CGU-CC- -UGC|GCGGA AGAU-GUAA- 1861 CGGGGCU-AA GCCAU-A|U| ACCGAAGCU| GCGG|augca c------(gu aa-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ---gugcau- GG-UAGGAGA G|-----CGU 2221 U-CUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCUG-U 2341 GAAGGUG-U- C-UU(-GUAA -)AGG--AUG CUGG|AGGUA U-CAGAAGUG CGAAUGC-UG 2401 AC|AUG-AGU A--GCGAUAA AGGGGG(UGA AAGG)CCCCC U|CGCC-GUA AGCCCAAGGU 2461 UUCCUA-CGC AACG-(UUCA U)CG|G-CGU AGGGUGAGU| CGG|C-CCCU AAGGCGAGGC 2521 A(GAGA)-U- GCGU-AGCUG AUGG-GAAGC AGG-(UU-AA UAUU)C-CUG C|AC|cg-u- 2581 cg-uau-gau ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga u------ggg g--gga-cgg aucgcggaa- gguu-g-|uc c-ggg(ug-- 2761 uuggau-gu- --)cc-cggu -|cccu---- ---------- ---gcau-ug gaga------ 2821 --uggca-cu uagg(ca-aa -u-)cc|g-- ggugcguga- ---------- uuca-agggu 2881 gug--ggg|c ga-|------ ------gcga c(-uuuag-) gucgc----- ------gaag 2941 --caauu--g gaag--ug-| guuccaagaa a-agccuc-u aagcuuca-- ------gu-c 3001 -auacg--a- g|A|CCGUAC CGCAAACC(G ACACA)GG|U GG-GCGAGA- U-(GAGUA)U 3061 UCUAAGGCGC ||UUGAGAGA ACUCGGGAG- ---------- ----AAGGAA CUCGGCAAAU 3121 UGGUACCGUA AC(-UUCG)G GAUAAGGUAC |GCCCUUgua -guuuga--- ------cugg 3181 c(-ucgc-)g ccag------ ---gaggau- gaagggg-U| U(GCA)AUAA AAUGGUG-GC 3241 UG|CGACU-- ---GU(UUAA UAAAA)ACAC AGCACUCUG| CAAACAC(GA AA------)G 3301 UGGACGU-AU AGGGUGUGA- CGCCUGCCCG GU|GCCG-GA A-GAUUAAAU GAUGGG---- 3361 GU-------- (G-CAA)--- --------GC ------UCUU GAUUGAAGUC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-UGGCCAC ACUGUCUCCU CCCGAGACUC 3541 A|GCGAAGUU |GAAGUGU-U UG(UGAUGAU G)CAAUCUCC CCGCGGC-UA GACGGAANGA 3601 CCCCAUGA|A CCU-UUACUG U|AGCUUUGC AUU|GGACUU UGAACCGAUC UGUGUAGGAU 3661 AGGUGGGAGG CUUUGAAA-- CCGGGAC(GC UA)GUUUCGG UGGAGCCGUC -C-UUGAAAU 3721 ACCACC|CUG G-UUUGUUUG AGG-UUCUAA -CCUUGG--- -CCCG(--ug aauc)-CGGG 3781 UCGGG-GACA GUGCAUGGUA GG-CAGUUUG ACUG(GGG)C GGUC|UCCUC C(CAA-AGUG 3841 UAAC)GGAGG A|G|U|UCGA AGGUACGC|U UGGUACGG(U CGGACA)UCG UACCUA-AA| 3901 GU(G|CAAUG )GCAAAAGCG UGCUUAACUG CGAGAC(CGA CAA)GUCGAG CAGGUGC(GA 3961 AA)GC-AGGA |CAUAGUGAU CCGGUGGUUC UG(UAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|UGGG|G AUAACAG|GC UGA--UACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC UC|AUCC|UG GGGCU(GUAG 4141 C---C)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGAGGUAC G-UGAGCUGG 4201 GUUUA-AAAC |GUC(GUGA) -GACAGUU-U GGU-CCCUAU -CU|GCCGUG G-G|CG-UUG 4261 GAAUCUU|GA -|CGGGGGC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG UACCGCUGGU GUACCUGU|U GUCUC(GC-C A-)GAG-CA- UCGCAGGGUA 4381 GCU-AUGUAC GGAAGAGAUA ACCGCU(GAA A-CAUCUA)A GCGGGAAACU UGCCUG|AAG 4441 AUGAGGAUUC C|CU|GGAGA -(cuuga-)- UCUCC-CUG- AAGG|-GU|C GUUC-(GAGA 4501 CC-A)GGACG -UUGAUAG|G CU-G|G~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS R.solana.1 4759 bp RNA RNA 02-JAN-1998 DEFINITION Ralstonia solanacearum. str. PD278 23S ribosomal RNA gene, partial sequence; . ACCESSION AF0124 6 KEYWORDS . SOURCE Ralstonia solanacearum. str. PD278 23S ribosomal RNA gene, partial sequence. ORGANISM Ralstonia solanacearum. REFERENCE 1 (bases 1 to 2816) AUTHORS Wullings,B.A., Van Beuningen,A.R., Janse,J.D. and Akkermans,A .D.L. TITLE FISH detection of the brownrot causing Ralstonia Solanacearum using 23S rRNA-targeted probes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2816) AUTHORS Wullings,B.A. TITLE Direct Submission JOURNAL Submitted (07-JUL-1997) Microbiology, Wageningen Agricultural University, Hesselink van Suchtelenweg 4, Wageningen, - 6703 CT, The Netherlands STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: AF012416 BASE COUNT 731 a 604 c 887 g 591 t 1946 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UCAAGCGAA- --UAAGUGCA UGUGGUGGAU 121 G|CCUUGG|C GAUCAC|AG| GC-GAUGAAG GA|CGUA(GU AG-CU-)U|- GCG-AAAAGC 181 UGCGGG|-GA GCU(G-GCAA ACG-)AGCUU UG-AUC-CGC AGAUG|UCCG AAUGGG(GAA 241 A)CCC|ggcc c---(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----guau)- --ggguc-AU CC-CUUGCU( 481 GA-AUACA-- UA)GGC-AAG -G-G--AGG- C-GAAC|GC- AGUGAACU|G A(AACA)UCU 541 AAGUA-GCUG CAGGAAAAGA AAUC(-AACC --)GAGAU|U CC-CAAAGUA GU(GGCGA)G 601 CGA-AAU-GG GA-ACA-GCC U--------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ------ugua cucuuuagca guauuguu-a gcgGAAc-gg a-a(u-ggaa a)g-uccggc 781 |c(aua)guG GG(UGAUAGC )CCCGU-ACG C-gaaaacag uau-ugugga acuaggugua 841 c--------- ---------- -----GACAA GUAGGGCGGG A(CACGUG-A AA)UCCUGUC 901 UGAAGAU-GG G-GG(GACCA U)CC-UCC-A AGGCUAA--- -AUACUCGUG AUCGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGCGAAAA-G AACCCC(GG- GA-)GGGGA- 1021 -GUGAAA-UA GAUCCUGAAA CCGC-AUGCA UACAA-A-CA GUCGGAGCCU --G------- 1081 --------(- ---gaaa--) ---------- -----C-GGG UGACGGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAC-AUUC- AGUGGC-AAG CUUAACC--( -GAUUA)--G 1201 G-GAAGGCGU AGC(GAAA-) GCGAGUCC(G AA-UA)GGGC GU-------- ---------- 1261 ---------- ------u-ca G-UCGCUGGG UGUA-GACCC GAAAC-CAA- GUGA-UCUAU 1321 CCAUGGC|CA GGUUGAAGGU GCGG(UAAC) AC-GUACUGG AGGACCGAAC N-CACUAAC( 1381 -GUUGAAAA) GUUAG|GGG- AUGAG-CUGU GGAUAGGGGU (-GAAAG)GC UAAACAAACU 1441 UGGAAAUAGC UGGUNCUCUC CGAAAACUAU (-UUAG)GUA GUGC|-CUCG UGUC----U| 1501 -CAC|CUUCG G|GGGUAG|A GC-ACUGUca UGGUUGG-GG |-GGUCU(AU UGC)UGAUUA 1561 CC-CCGCCAU aGCAAACUCC GAA-UA-|CC G-A-A-G--A GUGC---AA| UCA-CGGGAG 1621 ACAGAC--AU C-GGGU(GCU AAC)GUCCGG -UGUC-AAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCU- AAG-A-UUGG -C-UAA-GUG ------GGAA ACGAAGUG-G 1741 GAAGGCUAA- AACAGUCAGG AGGUUGGC(U UAGAAGCA)G CCAC-CCU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG AU-----CGA GU-CGU-CC- -UGC|GCGGA AGAU-GUAA- 1861 CGGGGCU-AA GCCAG-U|C| ACCGAAGCU| GCGG|augca c------(gu aa-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ---gugcau- GG-UAGGAGA G|-----CGU 2221 U-CUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCUG-U 2341 GAAGGUG-U- C-UU(-GUAA -)AGG--AUG CUGG|AGGUA U-CAGAAGUG CGAAUGC-UG 2401 AC|AUG-AGU A--GCGAUAA AGGGGG(UGA AAGG)CCCCC U|CGCC-GUA AGCCCAAGGU 2461 UUCCUA-CGC AACG-(UUCA U)CG|G-CGU AGGGUGAGU| CGG|C-CCCU AAGGCGAGGC 2521 A(GAGA)-U- GCGU-AGCUG AUGG-GAAGC AGG-(UU-AA UAUU)C-CUG C|AC|cg-u- 2581 cg-uau-gau ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga u------ggg g--gga-cgg aucgcggaa- gguu-g-|uc c-ggg(ug-- 2761 uuggaa-gu- --)cc-cggu -|cccu---- ---------- ---acau-ug gaga------ 2821 --uggca-cu uagg(ca-aa -u-)cc|g-- ggugcguga- ---------- uuca-agggu 2881 gug--ggg|c ga-|------ ------gcga c(-guuag-) gucgc----- ------gaag 2941 --caauu--g gaag--ug-| guuccaagaa a-agccuc-u aagcuuca-- ------gu-c 3001 -auacg--a- g|A|CCGUAC CGCAAACC(G ACACA)GG|U GG-GCGAGA- U-(GAGUA)U 3061 UCUAAGGCGC ||UUGAGAGA ACUCGGGAG- ---------- ----AAGGAA CUCGGCAAAU 3121 UGGUACCGUA AC(-UUCG)G GAUAAGGUAC |GCCCUugua -guuuga--- ------cugg 3181 c(-ucgc-)g ccag------ ---aaggau- gaagggg-U| U(GCA)AUAA AAUGGUG-GC 3241 UG|CGACU-- ---GU(UUAA UAAAA)ACAC AGCACUCUG| CAAACAC(GA AA------)G 3301 UGGACGU-AU AGGGUGUGA- CGCCUGCCCG GU|GCCG-GA A-GAUUAAAU GAUGGG---- 3361 GU-------- (G-CAA)--- --------GC ------UCUU GAUUGAAGUC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-UGGCCAC ACUGUCUCCU CCCGAGACUC 3541 A|GCGAAGUU |GAAGUGU-U UG(UGAUGAU G)CAAUCUCC CCGCGGC-UA GACGGAANGA 3601 CCCCAUGA|A CCU-UUACUG U|AGCUUUGC AUU|GGACUU UGAACCGAUC UGUGUAGGAU 3661 AGGUGGGAGG CUUUGAAA-- CCGGGAC(GC UA)GUUUCGG UGGAGCCGAC -C-UUGAAAU 3721 ACCACC|CUG G-UUUGUUUG AGG-UUCUAA -CCUUGG--- -CCCG(--UG aAUC)-CGGG 3781 UCGGG-GACA GUGCAUGGUA GG-CAGUUUG ACUG(GGG)C GGUC|UCCUC C(CAA-AGUG 3841 UAAC)GGAGG A|G|U|UCGA AGGUACGC|U UGGUACGG(U CGGACA)UCG UACCUA-AA| 3901 GU(G|CAAUG )GCAAAAGCG UGCUUAACUG CGAGAC(CGA CAA)GUCGAG CAGGUGC(GA 3961 AA)GC-AGGA |CAUAGUGAU CCGGUGGUUC UG(UAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|UGGG|G AUAACAG|GC UGA--UACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC UC|AUCC|UG GGGCU(GUAG 4141 C---C)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGAGGUAC G-UGAGCUGG 4201 GUUUA-AAAC |GUC(GUGA) -GACAGUU-U GGU-CCCUAU -CU|GCCGUG G-G|CG-UUG 4261 GAAUCUU|GA -|CGGGGGC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG UACCGCUGGU GUACCUGU|U GUCUC(GC-C A-)GAG-CA- UCGCAGGGUA 4381 UCU-AUGUAC GGAAGAGAUA ACCGCU(GAA A-CAUCUA)A GCGGGAAACU CGCCUG|AAG 4441 AUGAGGAUUC C|CU|GGAGA -(cuuga-)- UCUCC-CUG- AAGG|-GU|C GUUC-(GAGA 4501 CC-A)GGACG -UUGAUAU|G CU-G|G~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS R.solana.2 4759 bp RNA RNA 02-JAN-1998 DEFINITION Ralstonia solanacearum. str. PD1445 23S ribosomal RNA gene, partial sequence; . ACCESSION AF0124 7 KEYWORDS . SOURCE Ralstonia solanacearum. str. PD1445 23S ribosomal RNA gene, partial sequence. ORGANISM Ralstonia solanacearum. REFERENCE 1 (bases 1 to 2816) AUTHORS .D.L. Wullings,B.A., Van Beuningen,A.R., Janse,J.D. and Akkermans,A TITLE using 23S rRNA-targeted probes FISH detection of the brownrot causing Ralstonia Solanacearum JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2816) AUTHORS Wullings,B.A. TITLE Direct Submission JOURNAL Submitted (07-JUL-1997) Microbiology, Wageningen Agricultural University, Hesselink van Suchtelenweg 4, Wageningen, - 6703 CT, The Netherlands STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: AF012417 BASE COUNT 731 a 602 c 885 g 596 t 1945 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UCAAGCGAA- --UAAGUGCA UGUGGUGGAU 121 G|CCUUGG|C GAUCAC|AG| GC-GAUGAAG GA|CGUA(GU AG-CU-)U|- GCG-AAAAGC 181 UGCGGG|-GA GCU(G-GCAA ACG-)AGCUU UG-AUC-CGC AGAUG|UCCG AAUGGG(GAA 241 A)CCC|ggcc c---(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----gaau)- --ggguc-AU CU-GUUACU( 481 GA-AUUCA-- UA)GGU-AAC -A-G--AGG- C-GAAC|GC- AGUGAACU|G A(AACA)UCU 541 AAGUA-GCUG CAGGAAAAGA AAUC(-AACC --)GAGAU|U CC-CAAAGUA GU(GGCGA)G 601 CGA-AAU-GG GA-UCA-GCC U--------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ------ugua cucuuuagca guauuguu-a gcaAAAc-gg a-a(u-ggaa a)g-uccggc 781 |c(aua)guG GG(UGAUAGC )CCCGU-AUG C-gaaaacag uau-ugugga acuaggugua 841 c--------- ---------- -----GACAA GUAGGGCGGG A(CACGUG-A AA)UCCUGUC 901 UGAAGAU-GG G-GG(GACCA U)CC-UCC-A AGGCUAA--- -AUACUCGUG AUCGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGCGAAAA-G AACCCC(GG- GA-)GGGGA- 1021 -GUGAAA-UA GAUCCUGAAA CCGC-AUGCA UACAA-A-CA GUCGGAGCCU --G------- 1081 --------(- ---gaaa--) ---------- -----C-GGG UGACGGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAC-AUUC- AGUGGC-AAG CUUAACC--( -GAUUA)--G 1201 G-GAAGGCGU AGC(GAAA-) GCGAGUCC(G AA-UA)GGGC GU-------- ---------- 1261 ---------- ------u-ca G-UCGCUGGG UGUA-GACCC GAAAC-CAA- GUGA-UCUAU 1321 CCAUGGC|CA GGUUGAAGGU GCGG(UAAC) AC-GUACUGG AGGACCGAAC N-CACUAAC( 1381 -GUUGAAAA) GUUAG|GGG- AUGAG-CUGU GGAUAGGGGU (-GAAAG)GC UAAACAAACU 1441 UGGAAAUAGC UGGUUCUCUC CGAAAACUAU (-UUAG)GUA GUGC|-CUCG UGUC----U| 1501 -CAC|CUUCG G|GGGUAG|A GC-ACUGUca UGGUUGG-GG |-GGUCU(AU UGC)UGAUUA 1561 CC-CCGCCAU aGCAAACUCC GAA-UA-|CC G-A-A-G--A GUGC---AA| UCA-CGGGAG 1621 ACAGAC--AU C-GGGU(GCU AAC)GUCCGG -UGUC-AAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCU- AAG-A-UUGG -C-UAA-GUG ------GGAA ACGAAGUG-G 1741 GAAGGCUAA- AACAGUCAGG AGGUUGGC(U UAGAAGCA)G CCAC-CCU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG AU-----CGA GU-CGU-CC- -UGC|GCGGA AGAU-GUAA- 1861 CGGGGCU-AA GCCAG-U|C| ACCGAAGCU| GCGG|augca c------(gu aa-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ---gugcau- GG-UAGGAGA G|-----CGU 2221 U-CUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCUG-U 2341 GAAGGUG-U- C-UU(-GUGA -)AGG--AUG CUGG|AGGUA U-CAGAAGUG CGAAUGC-UG 2401 AC|AUG-AGU A--GCGAUAA AGGGGG(UGA AAGG)CCCCC U|CGCC-GUA AGCCCAAGGU 2461 UUCCUA-CGC AACG-(UUCA U)CG|G-CGU AGGGUGAGU| CGG|C-CCCU AAGGCGAGGC 2521 A(GAGA)-U- GCGU-AGCUG AUGG-GAAGC AGG-(UU-AA UAUU)C-CUG C|AC|cg-u- 2581 cg-uau-gau ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga u------ggg g--gga-cgg aucgcggaa- gguu-g-|uc c-ggg(ug-- 2761 uuggau-gu- --)cc-cggu -|cccu---- ---------- ---acau-ug gaga------ 2821 --uggca-cu uagg(ca-aa -u-)cc|g-- ggugcguga- ---------- uuca-agggu 2881 gug--ggg|c ga-|------ ------gcga c(-uuuag-) gucgc----- ------gaag 2941 --caauu--g gaag--ug-| guuccaagaa a-agccuc-u aagcuuca-- ------gu-c 3001 -auacg--a- g|A|CCGUAC CGCAAACC(G ACACA)GG|U GG-GCGAGA- U-(GAGUA)U 3061 UCUAAGGCGC ||UUGAGAGA ACUCGGGAG- ---------- ----AAGGAA CUCGGCAAAU 3121 UGGUACCGUA AC(-UUCG)G GAUAAGGUAC |GCCCUugua -guuuga--- ------cugg 3181 c(-ucgc-)g ccag------ ---aaggac- gaagggg-U| U(GCA)AUAA AAUgGUG-GC 3241 UG|CGACU-- ---GU(UUAA UAAAA)ACAC AGCACUCUG| CAAACAC(GA AA------)G 3301 UGGACGU-AU AGGGUGUGA- CGCCUGCCCG GU|GCCG-GA A-GAUUAAAU GAUGGG---- 3361 GU-------- (G-CAA)--- --------GC ------UCUU GAUUGAAGUC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-UGGCCAC ACUGUCUCCU CCCGAGACUC 3541 A|GCGAAGUU |GAAGUGU-U UG(UGAUGAU G)CAAUCUCC CCGCGGC-UA GACGGAANGA 3601 CCCCAUGA|A CCU-UUACUG U|AGCUUUGC AUU|GGACUU UGAACCGAUC UGUGUAGGAU 3661 AGGUGGGAGG CUUUGAAA-- CCGGGAC(GC UA)GUUUCGG UGGAGCCGUC -C-UUGAAAU 3721 ACCACC|CUG G-UUUGUUUG AGG-UUCUAA -CCUUGG--- -CCCG(--UG aAUC)-CGGG 3781 UCGGG-GACA GUGCAUGGUA GG-CAGUUUG ACUG(GGG)C GGUC|UCCUC C(CAA-AGUG 3841 UAAC)GGAGG A|G|U|UCGA AGGUACGC|U UGGUACGG(U CGGACA)UCG UACCUA-AA| 3901 GU(G|CAAUG )GCAAAAGCG UGCUUAACUG CGAGAC(CGA CAA)GUCGAG CAGGUGC(GA 3961 AA)GC-AGGA |CAUAGUGAU CCGGUGGUUC UG(UAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|UGGG|G AUAACAG|GC UGA--UACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC UC|AUCC|UG GGGCU(GUAG 4141 C---C)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGAGGUAC G-UGAGCUGG 4201 GUUUA-AAAC |GUC(GUGA) -GACAGUU-U GGU-CCCUAU -CU|GCCGUG G-G|CG-UUG 4261 GAAUCUU|GA -|CGGGGGC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG UACCGCUGGU GUACCUGU|U GUCUC(GC-C A-)GAG-CA- UCGCAGGGUA 4381 GCU-AUGUAC GGAAGAGAUA ACCGCU(GAA A-CAUCUA)A GCGGGAAACU CGCCUG|AAG 4441 AUGAGGAUUC C|CU|GGAGA -(cuuga-)- UCUCC-CUG- AAGG|-GU|C GUUC-(GAGA 4501 CC-A)GGACG -UUGAUAG|G CU-G|G~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS R.solana.3 4759 bp RNA RNA 02-JAN-1998 DEFINITION Ralstonia solanacearum. str. PD1449 23S ribosomal RNA gene, partial sequence; . ACCESSION AF0124 8 KEYWORDS . SOURCE Ralstonia solanacearum. str. PD1449 23S ribosomal RNA gene, partial sequence. ORGANISM Ralstonia solanacearum. REFERENCE 1 (bases 1 to 2816) AUTHORS Wullings,B.A., Van Beuningen,A.R., Janse,J.D. and Akkermans,A .D.L. TITLE FISH detection of the brownrot causing Ralstonia Solanacearum using 23S rRNA-targeted probes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2816) AUTHORS Wullings,B.A. TITLE Direct Submission JOURNAL Submitted (07-JUL-1997) Microbiology, Wageningen Agricultural University, Hesselink van Suchtelenweg 4, Wageningen, - 6703 CT, The Netherlands STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: AF012418 BASE COUNT 729 a 602 c 887 g 595 t 1946 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UCAAGCGAA- --UAAGUGCA UGUGGUGGAU 121 G|CCUUGG|C GAUCAC|AG| GC-GAUGAAG GA|CGUA(GU AG-CU-)U|- GCG-AAAAGC 181 UGCGGG|-GA GCU(G-GCAA ACG-)AGCUU UG-AUC-CGC AGAUG|UCCG AAUGGG(GAA 241 A)CCC|ggcc c---(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----guau)- --ggguc-AU CU-GUUACU( 481 GA-AUUCA-- UA)GGU-AAC -A-G--AGG- C-GAAC|GC- AGUGAACU|G A(AACA)UCU 541 AAGUA-GCUG CAGGAAAAGA AAUC(-AACC --)GAGAU|U CC-CAAAGUA GU(GGCGA)G 601 CGA-AAU-GG GA-ACA-GCC U--------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ------ugua cucuuuagca guauuguu-a gcaAAGc-gg a-a(u-ggaa a)g-uccggc 781 |c(aua)guG GG(UGAUAGC )CCCGU-AUG C-gaaaacag uau-ugugga acuaggugua 841 c--------- ---------- -----GACAA GUAGGGCGGG A(CACGUG-A AA)UCCUGUC 901 UGAAGAU-GG G-GG(GACCA U)CC-UCC-A AGGCUAA--- -AUACUCGUG AUCGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGCGAAAA-G AACCCC(GG- GA-)GGGGA- 1021 -GUGAAA-UA GAUCCUGAAA CCGC-AUGCA UACAA-A-CA GUCGGAGCCU --G------- 1081 --------(- ---gaaa--) ---------- -----C-GGG UGACGGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAC-AUUC- AGUGGC-AAG CUUAACC--( -GAUUA)--G 1201 G-GAAGGCGU AGC(GAAA-) GCGAGUCC(G AA-UA)GGGC GU-------- ---------- 1261 ---------- ------u-ca G-UCGCUGGG UGUA-GACCC GAAAC-CAA- GUGA-UCUAU 1321 CCAUGGC|CA GGUUGAAGGU GCGG(UAAC) AC-GUACUGG AGGACCGAAC N-CACUAAC( 1381 -GUUGAAAA) GUUAG|GGG- AUGAG-CUGU GGAUAGGGGU (-GAAAG)GC UAAACAAACU 1441 UGGAAAUAGC UGGUNCUCUC CGAAAACUAU (-UUAG)GUA GUGC|-CUCG UGUC----U| 1501 -CAC|CUUCG G|GGGUAG|A GC-ACUGUca UGGUUGG-GG |-GGUCU(AU UGC)UGAUUA 1561 CC-CCGCCAU aGCAAACUCC GAA-UA-|CC G-A-A-G--A GUGC---AA| UCA-CGGGAG 1621 ACAGAC--AU C-GGGU(GCU AAC)GUCCGG -UGUC-AAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCU- AAG-A-UUGG -C-UAA-GUG ------GGAA ACGAAGUG-G 1741 GAAGGCUAA- AACAGUCAGG AGGUUGGC(U UAGAAGCA)G CCAC-CCU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG AU-----CGA GU-CGU-CC- -UGC|GCGGA AGAU-GUAA- 1861 CGGGGCU-AA GCCAG-U|C| ACCGAAGCU| GCGG|augca c------(gu aa-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ---gugcau- GG-UAGGAGA G|-----CGU 2221 U-CUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCUG-U 2341 GAAGGUG-U- C-UU(-GUGA -)AGG--AUG CUGG|AGGUA U-CAGAAGUG CGAAUGC-UG 2401 AC|AUG-AGU A--GCGAUAA AGGGGG(UGA AAGG)CCCCC U|CGCC-GUA AGCCCAAGGU 2461 UUCCUA-CGC AACG-(UUCA U)CG|G-CGU AGGGUGAGU| CGG|C-CCCU AAGGCGAGGC 2521 A(GAGA)-U- GCGU-AGCUG AUGG-GAAGC AGG-(UU-AA UAUU)C-CUG C|AC|cg-u- 2581 cg-uau-gau ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga u------ggg g--gga-cgg aucgcggaa- gguu-g-|uc c-ggg(ug-- 2761 uuggau-gu- --)cc-cggu -|cccu---- ---------- ---gcau-ug gaga------ 2821 --uggca-cu uagg(ca-aa -u-)cc|g-- ggugcguga- ---------- uuca-agggu 2881 gug--ggg|c ga-|------ ------gcga c(-uuuag-) gucgc----- ------gaag 2941 --caauu--g gaag--ug-| guuccaagaa a-agccuc-u aagcuuca-- ------gu-c 3001 -auacg--a- g|A|CCGUAC CGCAAACC(G ACACA)GG|U GG-GCGAGA- U-(GAGUA)U 3061 UCUAAGGCGC ||UUGAGAGA ACUCGGGAG- ---------- ----AAGGAA CUCGGCAAAU 3121 UGGUACCGUA AC(-UUCG)G GAUAAGGUAC |GCCCUugua -guuuga--- ------cugg 3181 c(-ucgc-)g ccag------ ---aaggac- gaagggg-U| U(GCA)AUAA AAUGGUG-GC 3241 UG|CGACU-- ---GU(UUAA UAAAA)ACAC AGCACUCUG| CAAACAC(GA AA------)G 3301 UGGACGU-AU AGGGUGUGA- CGCCUGCCCG GU|GCCG-GA A-GAUUAAAU GAUGGG---- 3361 GU-------- (G-CAA)--- --------GC ------UCUU GAUUGAAGUC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-UGGCCAC ACUGUCUCCU CCCGAGACUC 3541 A|GCGAAGUU |GAAGUGU-U UG(UGAUGAU G)CAAUCUCC CCGCGGC-UA GACGGAANGA 3601 CCCCAUGA|A CCU-UUACUG U|AGCUUUGC AUU|GGACUU UGAACCGAUC UGUGUAGGAU 3661 AGGUGGGAGG CUUUGAAA-- CCGGGAC(GC UA)GUUUCGG UGGAGCCGUC -C-UUGAAAU 3721 ACCACC|CUG G-UUUGUUUG AGG-UUCUAA -CCUUGG--- -CCCG(--UG aAUC)-CGGG 3781 UCGGG-GACA GUGCAUGGUA GG-CAGUUUG ACUG(GGG)C GGUC|UCCUC C(CAA-AGUG 3841 UAAC)GGAGG A|G|U|UCGA AGGUACGC|U UGGUACGG(U CGGACA)UCG UACCUA-AA| 3901 GU(G|CAAUG )GCAAAAGCG UGCUUAACUG CGAGAC(CGA CAA)GUCGAG CAGGUGC(GA 3961 AA)GC-AGGA |CAUAGUGAU CCGGUGGUUC UG(UAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|UGGG|G AUAACAG|GC UGA--UACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC UC|AUCC|UG GGGCU(GUAG 4141 C---C)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGAGGUAC G-UGAGCUGG 4201 GUUUA-AAAC |GUC(GUGA) -GACAGUU-U GGU-CCCUAU -CU|GCCGUG G-G|CG-UUG 4261 GAAUCUU|GA -|CGGGGGC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG UACCGCUGGU GUACCUGU|U GUCUC(GC-C A-)GAG-CA- UCGCAGGGUA 4381 GCU-AUGUAC GGAAGAGAUA ACCGCU(GAA A-CAUCUA)A GCGGGAAACU CGCCUG|AAG 4441 AUGAGGAUUC C|CU|GGAGA -(cuuga-)- UCUCC-CUG- AAGG|-GU|C GUUC-(GAGA 4501 CC-A)GGACG -UUGAUAG|G CU-G|G~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS R.solana.4 4759 bp RNA RNA 02-JAN-1998 DEFINITION Ralstonia solanacearum. str. PD1450 23S ribosomal RNA gene, partial sequence; . ACCESSION AF0124 9 KEYWORDS . SOURCE Ralstonia solanacearum. str. PD1450 23S ribosomal RNA gene, partial sequence. ORGANISM Ralstonia solanacearum. REFERENCE 1 (bases 1 to 2816) AUTHORS .D.L. Wullings,B.A., Van Beuningen,A.R., Janse,J.D. and Akkermans,A TITLE using 23S rRNA-targeted probes FISH detection of the brownrot causing Ralstonia Solanacearum JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2816) AUTHORS Wullings,B.A. TITLE Direct Submission JOURNAL Submitted (07-JUL-1997) Microbiology, Wageningen Agricultural University, Hesselink van Suchtelenweg 4, Wageningen, - 6703 CT, The Netherlands STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: AF012419 BASE COUNT 730 a 603 c 889 g 590 t 1947 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UCAAGCGAA- --UAAGUGCA UGUGGUGGAU 121 G|CCUUGG|C GAUCAC|AG| GC-GAUGAAG GA|CGUA(GU AG-CU-)U|- GCG-AAAAGC 181 UGCGGG|-GA GCU(G-GCAA ACG-)AGCUU UG-AUC-CGC AGAUG|UCCG AAUGGG(GAA 241 A)CCC|ggcc c---(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----guau)- --ggguc-AU CC-CUUGCU( 481 GA-AUACA-- UA)GGC-AAG -G-G--AGG- C-GAAC|GC- AGUGAACU|G A(AACA)UCU 541 AAGUA-GCUG CAGGAAAAGA AAUC(-AACC --)GAGAU|U CC-CAAAGUA GU(GGCGA)G 601 CGA-AAU-GG GA-ACA-GCC U--------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ------ugua cucuuuagca guauuguu-a gcgGAAc-gg a-a(u-ggaa a)g-uccggc 781 |c(aua)guG GG(UGAUAGC )CCCGU-ACG C-gaaaacag uau-ugugga acuaggugua 841 c--------- ---------- -----GACAA GUAGGGCGGG A(CACGUG-A AA)UCCUGUC 901 UGAAGAU-GG G-GG(GACCA U)CC-UCC-A AGGCUAA--- -AUACUCGUG AUCGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGCGAAAA-G AACCCC(GG- GA-)GGGGA- 1021 -GUGAAA-UA GAUCCUGAAA CCGC-AUGCA UACAA-A-CA GUCGGAGCCU --G------- 1081 --------(- ---gaaa--) ---------- -----C-GGG UGACGGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAC-AUUC- AGUGGC-AAG CUUAACC--( -GAUUA)--G 1201 G-GAAGGCGU AGC(GAAA-) GCGAGUCC(G AA-UA)GGGC GU-------- ---------- 1261 ---------- ------u-ca G-UCGCUGGG UGUA-GACCC GAAAC-CAA- GUGA-UCUAU 1321 CCAUGGC|CA GGUUGAAGGU GCGG(UAAC) AC-GUACUGG AGGACCGAAC N-CACUAAC( 1381 -GUUGAAAA) GUUAG|GGG- AUGAG-CUGU GGAUAGGGGU (-GAAAG)GC UAAACAAACU 1441 UGGAAAUAGC UGGUNCUCUC CGAAAACUAU (-UUAG)GUA GUGC|-CUCG UGUC----U| 1501 -CAC|CUUCG G|GGGUAG|A GC-ACUGUca UGGUUGG-GG |-GGUCU(AU UGC)UGAUUA 1561 CC-CCGCCAU aGCAAACUCC GAA-UA-|CC G-A-A-G--A GUGC---AA| UCA-CGGGAG 1621 ACAGAC--AU C-GGGU(GCU AAC)GUCCGG -UGUC-AAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCU- AAG-A-UUGG -C-UAA-GUG ------GGAA ACGAAGUG-G 1741 GAAGGCUAA- AACAGUCAGG AGGUUGGC(U UAGAAGCA)G CCAC-CCU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG AU-----CGA GU-CGU-CC- -UGC|GCGGA AGAU-GUAA- 1861 CGGGGCU-AA GCCAG-U|C| ACCGAAGCU| GCGG|augca c------(gu aa-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ---gugcau- GG-UAGGAGA G|-----CGU 2221 U-CUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCUG-U 2341 GAAGGUG-U- C-UU(-GUAA -)AGG--AUG CUGG|AGGUA U-CAGAAGUG CGAAUGC-UG 2401 AC|AUG-AGU A--GCGAUAA AGGGGG(UGA AAGG)CCCCC U|CGCC-GUA AGCCCAAGGU 2461 UUCCUA-CGC AACG-(UUCA U)CG|G-CGU AGGGUGAGU| CGG|C-CCCU AAGGCGAGGC 2521 A(GAGA)-U- GCGU-AGCUG AUGG-GAAGC AGG-(UU-AA UAUU)C-CUG C|AC|cg-u- 2581 cg-uau-gau ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga u------ggg g--gga-cgg aucgcggaa- gguu-g-|uc c-ggg(ug-- 2761 uuggaa-gu- --)cc-cggu -|cccu---- ---------- ---acau-ug gaga------ 2821 --uggca-cu uagg(ca-aa -u-)cc|g-- ggugcguga- ---------- uuca-agggu 2881 gug--ggg|c ga-|------ ------gcga c(-guuag-) gucgc----- ------gaag 2941 --caauu--g gaag--ug-| guuccaagaa a-agccuc-u aagcuuca-- ------gu-c 3001 -auacg--a- g|A|CCGUAC CGCAAACC(G ACACA)GG|U GG-GCGAGA- U-(GAGUA)U 3061 UCUAAGGCGC ||UUGAGAGA ACUCGGGAG- ---------- ----AAGGAA CUCGGCAAAU 3121 UGGUACCGUA AC(-UUCG)G GAUAAGGUAC |GCCCUugua -guuuga--- ------cugg 3181 c(-ucgc-)g ccag------ ---aaggau- gaagggg-U| U(GCA)AUAA AAUGGUG-GC 3241 UG|CGACU-- ---GU(UUAA UAAAA)ACHC AGCACUCUG| CAAACAC(GA AA------)G 3301 UGGACGU-AU AGGGUGUGA- CGCCUGCCCG GU|GCCG-GA A-GAUUAAAU GAUGGG---- 3361 GU-------- (G-CAA)--- --------GC ------UCUU GAUUGAAGUC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-UGGCCAC ACUGUCUCCU CCCGAGACUC 3541 A|GCGAAGUU |GAAGUGU-U UG(UGAUGAU G)CAAUCUCC CCGCGGC-UA GACGGAANGA 3601 CCCCAUGA|A CCU-UUACUG U|AGCUUUGC AUU|GGACUU UGAACCGAUC UGUGUAGGAU 3661 AGGUGGGAGG CUUUGAAA-- CCGGGAC(GC UA)GUUUCGG UGGAGCCGAC -C-UUGAAAU 3721 ACCACC|CUG G-UUUGUUUG AGG-UUCUAA -CCUUGG--- -CCCG(--UG aAUC)-CGGG 3781 UCGGG-GACA GUGCAUGGUA GG-CAGUUUG ACUG(GGG)C GGUC|UCCUU C(CAA-AGUG 3841 UAAC)GGAGG A|G|U|UCGA AGGUACGC|U UGGUACGG(U CGGACA)UCG UACCUA-AA| 3901 GU(G|CAAUG )GCAAAAGCG UGCUUAACUG CGAGAC(CGA CAA)GUCGAG CAGGUGC(GA 3961 AA)GC-AGGA |CAUAGUGAU CCGGUGGUUC UG(UAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|UGGG|G AUAACAG|GC UGA--UACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC UC|AUCC|UG GGGCU(GUAG 4141 C---C)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGAGGUAC G-UGAGCUGG 4201 GUUUA-AAAC |GUC(GUGA) -GACAGUU-U GGU-CCCUAU -CU|GCCGUG G-G|CG-UUG 4261 GAAUCUU|GA -|CGGGGGC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG UACCGCUGGU GUACCUGU|U GUCUC(GC-C A-)GAG-CA- UCGCAGGGUA 4381 GCU-AUGUAC GGAAGAGAUA ACCGCU(GAA A-CAUCUA)A GCGGGAAACU CGCCUG|AAG 4441 AUGAGGAUUC C|CU|GGAGA -(cuuga-)- UCUCC-CUG- AAGG|-GU|C GUUC-(GAGA 4501 CC-A)GGACG -UUGAUAG|G CU-G|G~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS R.solana.5 4759 bp RNA RNA 02-JAN-1998 DEFINITION Ralstonia solanacearum. str. PD2762 23S ribosomal RNA gene, partial sequence; . ACCESSION AF0124 0 KEYWORDS . SOURCE Ralstonia solanacearum. str. PD2762 23S ribosomal RNA gene, partial sequence. ORGANISM Ralstonia solanacearum. REFERENCE 1 (bases 1 to 2816) AUTHORS .D.L. Wullings,B.A., Van Beuningen,A.R., Janse,J.D. and Akkermans,A TITLE using 23S rRNA-targeted probes FISH detection of the brownrot causing Ralstonia Solanacearum JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2816) AUTHORS Wullings,B.A. TITLE Direct Submission JOURNAL Submitted (07-JUL-1997) Microbiology, Wageningen Agricultural University, Hesselink van Suchtelenweg 4, Wageningen, - 6703 CT, The Netherlands STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: AF012420 BASE COUNT 731 a 603 c 885 g 594 t 1946 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UCAAGCGAA- --UAAGUGCA UGUGGUGGAU 121 G|CCUUGG|C GAUCAC|AG| GC-GAUGAAG GA|CGCA(GU AG-CU-)U|- GCG-AAAAGC 181 UGCGGG|-GA GCU(G-GCAA ACG-)AGCUU UG-AUC-CGC AGAUG|UCCG AAUGGG(GAA 241 A)CCC|ggcc c---(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----gaau)- --ggguc-AU CU-GUUACU( 481 GA-AUUCA-- UA)GGU-AAC -A-G--AGG- C-GAAC|GC- AGUGAACU|G A(AACA)UCU 541 AAGUA-GCUG CAGGAAAAGA AAUC(-AACC --)GAGAU|U CC-CAAAGUA GU(GGCGA)G 601 CGA-AAU-GG GA-UCA-GCC U--------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ------ugua cucuuuagca guauuguu-a gcaAAAc-gg a-a(u-ggaa a)g-uccggc 781 |c(aua)guG GG(UGAUAGC )CCCGU-AUG C-gaaaacag uau-ugugga acuaggugua 841 c--------- ---------- -----GACAA GUAGGGCGGG A(CACGUG-A AA)UCCUGUC 901 UGAAGAU-GG G-GG(GACCA U)CC-UCC-A AGGCUAA--- -AUACUCGUG AUCGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGCGAAAA-G AACCCC(GG- GA-)GGGGA- 1021 -GUGAAA-UA GAUCCUGAAA CCGC-AUGCA UACAA-A-CA GUCGGAGCCU --G------- 1081 --------(- ---gaaa--) ---------- -----C-GGG UGACGGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAC-AUUC- AGUGGC-AAG CUUAACC--( -GAUUA)--G 1201 G-GAAGGCGU AGC(GAAA-) GCGAGUCC(G AA-UA)GGGC GU-------- ---------- 1261 ---------- ------u-ca G-UCGCUGGG UGUA-GACCC GAAAC-CAA- GUGA-UCUAU 1321 CCAUGGC|CA GGUUGAAGGU GCGG(UAAC) AC-GUACUGG AGGACCGAAC N-CACUAAC( 1381 -GUUGAAAA) GUUAG|GGG- AUGAG-CUGU GGAUAGGGGU (-GAAAG)GC UAAACAAACU 1441 UGGAAAUAGC UGGUNCUCUC CGAAAACUAU (-UUAG)GUA GUGC|-CUCG UGUC----U| 1501 -CAC|CUUCG G|GGGUAG|A GC-ACUGUca UGGUUGG-GG |-GGUCU(AU UGC)UGAUUA 1561 CC-CCGCCAU aGCAAACUCC GAA-UA-|CC G-A-A-G--A GUGC---AA| UCA-CGGGAG 1621 ACAGAC--AU C-GGGU(GCU AAC)GUCCGG -UGUC-AAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCU- AAG-A-UUGG -C-UAA-GUG ------GGAA ACGAAGUG-G 1741 GAAGGCUAA- AACAGUCAGG AGGUUGGC(U UAGAAGCA)G CCAC-CCU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG AU-----CGA GU-CGU-CC- -UGC|GCGGA AGAU-GUAA- 1861 CGGGGCU-AA GCCAG-U|C| ACCGAAGCU| GCGG|augca c------(gu aa-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ---gugcau- GG-UAGGAGA G|-----CGU 2221 U-CUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCUG-U 2341 GAAGGUG-U- C-UU(-GUGA -)AGG--AUG CUGG|AGGUA U-CAGAAGUG CGAAUGC-UG 2401 AC|AUG-AGU A--GCGAUAA AGGGGG(UGA AAGG)CCCCC U|CGCC-GUA AGCCCAAGGU 2461 UUCCUA-CGC AACG-(UUCA U)CG|G-CGU AGGGUGAGU| CGG|C-CCCU AAGGCGAGGC 2521 A(GAGA)-U- GCGU-AGCUG AUGG-GAAGC AGG-(UU-AA UAUU)C-CUG C|AC|cg-u- 2581 cg-uau-gau ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga u------ggg g--gga-cgg aucgcggaa- gguu-g-|uc c-ggg(ug-- 2761 uuggau-gu- --)cc-cggu -|cccu---- ---------- ---acau-ug gaga------ 2821 --uggca-cu uagg(ca-aa -u-)cc|g-- ggugcguga- ---------- uuca-agggu 2881 gug--ggg|c ga-|------ ------gcga c(-uuuag-) gucgc----- ------gaag 2941 --caauu--g gaag--ug-| guuccaagaa a-agccuc-u aagcuuca-- ------gu-c 3001 -auacg--a- g|A|CCGUAC CGCAAACC(G ACACA)GG|U GG-GCGAGA- U-(GAGUA)U 3061 UCUAAGGCGC ||UUGAGAGA ACUCGGGAG- ---------- ----AAGGAA CUCGGCAAAU 3121 UGGUACCGUA AC(-UUCG)G GAUAAGGUAC |GCCCUugua -guuuga--- ------cugg 3181 c(-ucgc-)g ccag------ ---aaggac- gaagggg-U| U(GCA)AUAA AAUGGUG-GC 3241 UG|CGACU-- ---GU(UUAA UAAAA)ACAC AGCACUCUG| CAAACAC(GA AA------)G 3301 UGGACGU-AU AGGGUGUGA- CGCCUGCCCG GU|GCCG-GA A-GAUUAAAU GAUGGG---- 3361 GU-------- (G-CAA)--- --------GC ------UCUU GAUUGAAGUC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-UGGCCAC ACUGUCUCCU CCCGAGACUC 3541 A|GCGAAGUU |GAAGUGU-U UG(UGAUGAU G)CAAUCUCC CCGCGGC-UA GACGGAANGA 3601 CCCCAUGA|A CCU-UUACUG U|AGCUUUGC AUU|GGACUU UGAACCGAUC UGUGUAGGAU 3661 AGGUGGGAGG CUUUGAAA-- CCGGGAC(GC UA)GUUUCGG UGGAGCCGUC -C-UUGAAAU 3721 ACCACC|CUG G-UUUGUUUG AGG-UUCUAA -CCUUGG--- -CCCG(--UG aAUC)-CGGG 3781 UCGGG-GACA GUGCAUGGUA GG-CAGUUUG ACUG(GGG)C GGUC|UCCUC C(CAA-AGUG 3841 UAAC)GGAGG A|G|U|UCGA AGGUACGC|U UGGUACGG(U CGGACA)UCG UACCUA-AA| 3901 GU(G|CAAUG )GCAAAAGCG UGCUUAACUG CGAGAC(CGA CAA)GUCGAG CAGGUGC(GA 3961 AA)GC-AGGA |CAUAGUGAU CCGGUGGUUC UG(UAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|UGGG|G AUAACAG|GC UGA--UACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC UC|AUCC|UG GGGCU(GUAG 4141 C---C)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGAGGUAC G-UGAGCUGG 4201 GUUUA-AAAC |GUC(GUGA) -GACAGUU-U GGU-CCCUAU -CU|GCCGUG G-G|CG-UUG 4261 GAAUCUU|GA -|CGGGGGC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG UACCGCUGGU GUACCUGU|U GUCUC(GC-C A-)GAG-CA- UCGCAGGGUA 4381 GCU-AUGUAC GGAAGAGAUA ACCGCU(GAA A-CAUCUA)A GCGGGAAACU CGCCUG|AAG 4441 AUGAGGAUUC C|CU|GGAGA -(cuuga-)- UCUCC-CUG- AAGG|-GU|C GUUC-(GAGA 4501 CC-A)GGACG -UUGAUAG|G CU-G|G~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS B.mallei 4759 bp RNA RNA 29-SEP-1998 DEFINITION Burkholderia mallei.; 23S ribosomal RNA; 23S rRNA gene. ACCESSION Y17183 KEYWORDS 23S ribosomal RNA; 23S rRNA gene. SOURCE Burkholderia mallei. ORGANISM Burkholderia mallei. REFERENCE 1 (bases 1 to 2882) AUTHORS Schneider,I. Bauernfeind,A., Roller,C., Meyer,D., Jungwirth,R. and TITLE mallei and Burkholderia pseudomallei Molecular procedure for rapid detection of Burkholderia JOURNAL J. Clin. Microbiol. 36 (9), 2737-2741 (1998) STANDARD No information REFERENCE 2 (bases 1 to 2882) AUTHORS Bauernfeind,A. TITLE Direct Submission JOURNAL Submitted (24-APR-1998) A. Bauernfeind, Max-von-Pettenkofer-Inst.d. LMU Muenchen, Pettenkoferstr. 9a, D- 80336 Muenchen, FRG STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: Y17183 BASE COUNT 742 a 632 c 907 g 601 t 1877 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UCAAGCGAA- --CAAGUGCA UGUGGUGGAU 121 G|CCUUGG|C GAUCAC|AG| GC-GAUGAAG GA|CGCG(GU AG-CC-)U|- GCG-AAAAGC 181 UACGGG|-GA GCU(G-GCAA ACG-)AGCUU UG-AUC-CGU AGAUG|UCCG AAUGGG(GAA 241 A)CCC|ggcc c---(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----uuuu)- --ggguc-AU CC-UAGACU( 481 GA-AUACA-- UA)GGU-CUA -GUG--AGG- C-GAAC|GC- GGUGAACU|G A(AACA)UCU 541 AAGUA-ACCG CAGGAAAAGA AAUC(-AACC --)GAGAU|U CC-CAAAGUA GU(GGCGA)G 601 CGA-AAU-GG GA-AGA-GCC U--------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------gua cucuuuauuu guauuguu-a gccGAAc-gc u-c(u-ggaa a)g-ugcggc 781 |c(aua)gcA GG(UGAUAGC )CCUGU-AGG C-gaaaacag uau-gaaaga acuaggugua 841 c--------- ---------- -----GACAA GUAGGGCGGG A(CACGUG-A AA)UCCUGUC 901 UGAAGAU-GG G-GG(GACCA U)CC-UCC-A AGGCUAA--- -AUACUCGUG AUCGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGCGAAAA-G AACCCC(GG- GA-)GGGGA- 1021 -GUGAAA-UA GAUCCUGAAA CCGC-AUGCA UACAA-A-CA GUCGGAGCCU --C------- 1081 --------(- ---uucg--) ---------- -----G-GGG UGACGGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAC-GUUC- AGUAGC-AAG CUUAACC--( -GAAUA)--G 1201 G-GCAGGCGU AGC(GAAA-) GCGAGUCC(G AA-UA)GGGC Gu-------- ---------- 1261 ---------- ------u-CA G-UUGCUGGG CGUA-GACCC GAAAC-CAG- GUGA-UCUAU 1321 CCAUGGC|CA GGAUGAAGGU GCGG(UAAC) AC-GUACUGG AGGUCCGAAC C-CACUAAC( 1381 -GUUGAAAA) GUUAG|GGG- AUGAG-CUGU GGAUAGGGGU (-GAAAG)GC UAAACAAACC 1441 UGGAAAUAGC UGGUUCUCUC CGAAAACUAU (-UUAG)GUA GUGC|-CUCG UGUc----U| 1501 -CAC|CUUCG G|GGGUAG|A GC-ACUGU-C AUGGUUG-GG |GGGUCU(AU UGC)AGAUUA 1561 CCCCGCCAUA -GCAAACUCC GAA-UA-|CC G-A-A-G--A GUGC---AA| UCA-CGGGAG 1621 ACAGAC--AU C-GGGU(GCU AAC)GUCCGG -UGUC-AAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCC- AAA-U-AUGG -C-UAA-GUG ------GGAA ACGAAGUG-G 1741 GAAGGCUAA- AACAGUCAGG AGGUUGGC(U UAGAAGCA)G CCAC-CCU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG AU-----CGA GU-CGU-CC- -UGC|GCGGA AGAU-GUAA- 1861 CGGGGCU-AA GCCAU-A|U| ACCGAAGCU| GCGG|augcg ag-----(cu agu------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --cucgcau- GG-UAGGAGA G|-----CGU 2221 U-CCG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCUG-C 2341 GAAGGUG-C- G-UU(-GAAA -)AGC--GUG CUGG|AGGUA U-CGGAAGUG CGAAUGC-UG 2401 AC|AUG-AGU A--GCGAUAA AGGGGG(UGA AAGG)CCCCC U|CGCC-GUA AGCCCAAGGU 2461 UUCCUA-CGC AACG-(UUCA U)CG|G-CGU AGGGUGAGU| CGG|C-CCCU AAGGCGAGGC 2521 A(GAAA)-U- GCGU-AGCUG AUGG-GAAGC AGG-(UC-AA UAUU)C-CUG C|AC|cg-u- 2581 cg-uua-gau ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga u------ggg g--gga-cgg aucgcggaa- gguu-g-|uc c-ggg(ug-- 2761 uuggaa-gu- --)cc-cggu -|cgcu---- ---------- ---gcauugg agaa------ 2821 ---ggcg-cu uagg(ca-aa -u-)cc|g-- ggcgcagga- ---------- -uucaagggu 2881 gug--gcg|c ga-|------ ------gcuc c(-uucg--) ggagc----- ------gaag 2941 --caauu--g gaag--ug-| guuccaagaa a-agccuc-u aagcuuca-- ------gu-c 3001 -uaacg--au g|A|CCGUAC CGCAAACC(G ACACA)GG|U GG-GCGAGA- U-(GAGUA)U 3061 UCUAAGGCGC ||UUGAGAGA ACUCGGGAG- ---------- ----AAGGAA CUCGGCAAAU 3121 UGGUACCGUA AC(-UUCG)G GAUAAGGUAC |GCCCUggua -gcuuga--- ------cugg 3181 c(-cugc-)g ccag------ ---aagggu- gaagggg-U| U(GCA)AUAA ACUGGUG-GC 3241 UG|CGACU-- ---GU(UUAA UAAAA)ACAC AGCACUCUG| CAAACAC(GA AA------)G 3301 UGGACGU-AU AGGGUGUGA- CGCCUGCCCG GU|GCCG-GA A-GAUUAAAU GAUGGG---- 3361 GU-------- (G-CAA)--- --------GC ------UCUU GAUUGAAGUC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-UGGCCAC ACUGUCUCCU CCCGAGACUC 3541 A|GCGAAGUU |GAAGUGU-U UG(UGAUGAU G)CAAUCUAC CCGCGGC-UA GACGGAAAGA 3601 CCCCAUGA|A CCU-UUACUG U|AGCUUUGC AUU|GGACUU UGAACCGAUC UGUGUAGGAU 3661 AGGUGGGAGG CUAUGAAA-- CCGGAAU(GC UA)GUUUCGG UGGAGCCGUC -C-UUGAAAU 3721 ACCACC|CUG G-UUUGUUUG AGG-UUCUAA -CCUUGG--- -CCCG(--ug -auc)-CGGG 3781 UCGGG-GACA GUGCAUGGUA GG-CAGUUUG ACUG(GGG)C GGUC|UCCUC C(CAA-AGCG 3841 UAAC)GGAGG A|G|U|ACGA AGGUACGC|U AGGUACGG(U CGGAAA)UCG UGCUGA-UA| 3901 GU(G|CAAUG )GCAUAAGCG UGCUUAACUG CGAGAC(CGA CAA)GUCGAG CAGGUGC(GA 3961 AA)GC-AGGU |CAUAGUGAU CCGGUGGUUC UG(UAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|UGGG|G AUAACAG|GC UGA--UACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC UC|AUCC|UG GGGCU(GUAG 4141 C---C)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGAGGUAC G-UGAGCUGG 4201 GUUUA-AAAC |GUC(GUGA) -GACAGUU-U GGU-CCCUAU -CU|GCCGUG G-G|CG-UUG 4261 GAAGUUU|GA -|AGGGGGC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG AACCUCUGGU GUACCGGU|U GUGAC(GC-C A-)GUCGCA- UCGCCGGGUA 4381 GCU-AUGUUC GGAAGAGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAACU CGCCUU|AAG 4441 AUGAGACUUC C|CC|GGGGA -(cuuga-)- UCCCC-UUG- AAGG|-GU|C GUUC-(GAGA 4501 CC-A)GGACG -UUGAUAG|G UCGG|GUGUG -UAAGCGCA- -(GUAA-)-- UGCGU|UC-A 4561 GCUA|A|CCG AUACUAAUU- GCCCGUACG| GCUUGA-UCC Ua------|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS B.pseudoma 4759 bp RNA RNA 29-SEP-1998 DEFINITION Burkholderia pseudomallei.; 23S ribosomal RNA; 23S rRNA gene. ACCESSION Y17184 KEYWORDS 23S ribosomal RNA; 23S rRNA gene. SOURCE Burkholderia pseudomallei. ORGANISM Burkholderia pseudomallei. REFERENCE 1 (bases 1 to 2882) AUTHORS Bauernfeind,A., Roller,C., Meyer,D., Jungwirth,R. and Schneider,I. TITLE Molecular procedure for rapid detection of Burkholderia mallei and Burkholderia pseudomallei JOURNAL J. Clin. Microbiol. 36 (9), 2737-2741 (1998) STANDARD No information REFERENCE 2 (bases 1 to 2882) AUTHORS Bauernfeind,A. TITLE Direct Submission JOURNAL Submitted (24-APR-1998) A. Bauernfeind, Max-von-Pettenkofer-Inst.d. LMU Muenchen, Pettenkoferstr. 9a, D- 80336 Muenchen, FRG STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: Y17184 BASE COUNT 742 a 633 c 908 g 599 t 1877 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UCAAGCGAA- --CAAGUGCA UGUGGUGGAU 121 G|CCUUGG|C GAUCAC|AG| GC-GAUGAAG GA|CGCG(GU AG-CC-)U|- GCG-AAAAGC 181 UACGGG|-GA GCU(G-GCAA ACG-)AGCUU UG-AUC-CGU AGAUG|UCCG AAUGGG(GAA 241 A)CCC|ggcc c---(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----uuuu)- --ggguc-AU CC-UAGACU( 481 GA-AUACA-- UA)GGU-CUA -GUG--AGG- C-GAAC|GC- GGUGAACU|G A(AACA)UCU 541 AAGUA-ACCG CAGGAAAAGA AAUC(-AACC --)GAGAU|U CC-CAAAGUA GU(GGCGA)G 601 CGA-AAU-GG GA-AGA-GCC U--------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------gua cucuuuauuu guauuguu-a gccGAAc-gc u-c(u-ggaa a)g-ugcggc 781 |c(aua)gcA GG(UGAUAGC )CCUGU-AGG C-gaaaacag uau-gaaaga acuaggugua 841 c--------- ---------- -----GACAA GUAGGGCGGG A(CACGUG-A AA)UCCUGUC 901 UGAAGAU-GG G-GG(GACCA U)CC-UCC-A AGGCUAA--- -AUACUCGUG AUCGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGCGAAAA-G AACCCC(GG- GA-)GGGGA- 1021 -GUGAAA-UA GAUCCUGAAA CCGC-AUGCA UACAA-A-CA GUCGGAGCCU --C------- 1081 --------(- ---uucg--) ---------- -----G-GGG UGACGGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAC-GUUC- AGUAGC-AAG CUUAACC--( -GAAUA)--G 1201 G-GCAGGCGU AGC(GAAA-) GCGAGUCC(G AA-UA)GGGC Gu-------- ---------- 1261 ---------- ------u-CA G-UUGCUGGG CGUA-GACCC GAAAC-CAG- GUGA-UCUAU 1321 CCAUGGC|CA GGAUGAAGGU GCGG(UAAC) AC-GUACUGG AGGUCCGAAC C-CACUAAC( 1381 -GUUGAAAA) GUUAG|GGG- AUGAG-CUGU GGAUAGGGGU (-GAAAG)GC UAAACAAACC 1441 UGGAAAUAGC UGGUUCUCUC CGAAAACUAU (-UUAG)GUA GUGC|-CUCG UGUc----U| 1501 -CAC|CUUCG G|GGGUAG|A GC-ACUGU-C AUGGUUG-GG |GGGUCU(AU UGC)AGAUUA 1561 CCCCGCCAUA -GCAAACUCC GAA-UA-|CC G-A-A-G--A GUGC---AA| UCA-CGGGAG 1621 ACAGAC--AU C-GGGU(GCU AAC)GUCCGG -UGUC-AAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCC- AAA-U-AUGG -C-UAA-GUG ------GGAA ACGAAGUG-G 1741 GAAGGCUAA- AACAGUCAGG AGGUUGGC(U UAGAAGCA)G CCAC-CCU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG AU-----CGA GU-CGU-CC- -UGC|GCGGA AGAU-GUAA- 1861 CGGGGCU-AA GCCAU-A|U| ACCGAAGCU| GCGG|augcg ag-----(cu agu------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --cucgcau- GG-UAGGAGA G|-----CGU 2221 U-CCG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCUG-C 2341 GAAGGUG-C- G-UU(-GAAA -)AGC--GUG CUGG|AGGUA U-CGGAAGUG CGAAUGC-UG 2401 AC|AUG-AGU A--GCGAUAA AGGGGG(UGA AAGG)CCCCC U|CGCC-GUA AGCCCAAGGU 2461 UUCCUA-CGC AACG-(UUCA U)CG|G-CGU AGGGUGAGU| CGG|C-CCCU AAGGCGAGGC 2521 A(GAAA)-U- GCGU-AGCUG AUGG-GAAGC AGG-(UC-AA UAUU)C-CUG C|AC|cg-u- 2581 cg-uua-gau ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga u------ggg g--gga-cgg aucgcggaa- gguu-g-|uc c-ggg(ug-- 2761 uuggaa-gu- --)cc-cggu -|cgcu---- ---------- ---gcauugg agaa------ 2821 ---ggcg-cu uagg(ca-aa -u-)cc|g-- ggcgcagga- ---------- -uucaagggu 2881 gug--gcg|c ga-|------ ------gcgc u(-cuag--) ggcgc----- ------gaag 2941 --caauu--g gaag--ug-| guuccaagaa a-agccuc-u aagcuuca-- ------gu-c 3001 -uaacg--au g|A|CCGUAC CGCAAACC(G ACACA)GG|U GG-GCGAGA- U-(GAGUA)U 3061 UCUAAGGCGC ||UUGAGAGA ACUCGGGAG- ---------- ----AAGGAA CUCGGCAAAU 3121 UGGUACCGUA AC(-UUCG)G GAUAAGGUAC |GCCCUggua -gcuuga--- ------cugg 3181 c(-cugc-)g ccag------ ---aagggu- gaagggg-U| U(GCA)AUAA ACUGGUG-GC 3241 UG|CGACU-- ---GU(UUAA UAAAA)ACAC AGCACUCUG| CAAACAC(GA AA------)G 3301 UGGACGU-AU AGGGUGUGA- CGCCUGCCCG GU|GCCG-GA A-GAUUAAAU GAUGGG---- 3361 GU-------- (G-CAA)--- --------GC ------UCUU GAUUGAAGUC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-UGGCCAC ACUGUCUCCU CCCGAGACUC 3541 A|GCGAAGUU |GAAGUGU-U UG(UGAUGAU G)CAAUCUAC CCGCGGC-UA GACGGAAAGA 3601 CCCCAUGA|A CCU-UUACUG U|AGCUUUGC AUU|GGACUU UGAACCGAUC UGUGUAGGAU 3661 AGGUGGGAGG CUAUGAAA-- CCGGAAC(GC UA)GUUUCGG UGGAGCCGUC -C-UUGAAAU 3721 ACCACC|CUG G-UUUGUUUG AGG-UUCUAA -CCUUGG--- -CCCG(--ug -auc)-CGGG 3781 UCGGG-GACA GUGCAUGGUA GG-CAGUUUG ACUG(GGG)C GGUC|UCCUC C(CAA-AGCG 3841 UAAC)GGAGG A|G|U|ACGA AGGUACGC|U AGGUACGG(U CGGAAA)UCG UGCUGA-UA| 3901 GU(G|CAAUG )GCAUAAGCG UGCUUAACUG CGAGAC(CGA CAA)GUCGAG CAGGUGC(GA 3961 AA)GC-AGGU |CAUAGUGAU CCGGUGGUUC UG(UAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|UGGG|G AUAACAG|GC UGA--UACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC UC|AUCC|UG GGGCU(GUAG 4141 C---C)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGAGGUAC G-UGAGCUGG 4201 GUUUA-AAAC |GUC(GUGA) -GACAGUU-U GGU-CCCUAU -CU|GCCGUG G-G|CG-UUG 4261 GAAGUUU|GA -|AGGGGGC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG AACCUCUGGU GUACCGGU|U GUGAC(GC-C A-)GUCGCA- UCGCCGGGUA 4381 GCU-AUGUUC GGAAGAGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAACU CGCCUU|AAG 4441 AUGAGACUUC C|CC|GGGGA -(cuuga-)- UCCCC-UUG- AAGG|-GU|C GUUC-(GAGA 4501 CC-A)GGACG -UUGAUAG|G UCGG|GUGUG -UAAGCGCA- -(GUAA-)-- UGCGU|UC-A 4561 GCUA|A|CCG AUACUAAUU- GCCCGUACG| GCUUGA-UCC Ua------|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS B.gladioli 4759 bp RNA RNA 24-AUG-1998 DEFINITION Burkholderia gladioli.; 23S ribosomal RNA; 23S rRNA gene. ACCESSION Y17182 KEYWORDS 23S ribosomal RNA; 23S rRNA gene. SOURCE Burkholderia gladioli. ORGANISM Burkholderia gladioli. REFERENCE 1 (bases 1 to 2880) AUTHORS Bauernfeind,A., Schneider,I., Jungwirth,R. and Roller,C. TITLE by PCR Discrimination of burkholderia gladioli from other burkholderia species detectable in cystic fibrosis patients JOURNAL J. Clin. Microbiol. 36 (9), 2748-2751 (1998) STANDARD No information REFERENCE 2 (bases 1 to 2880) AUTHORS Bauernfeind,A. TITLE Direct Submission JOURNAL Submitted (24-APR-1998) A. Bauernfeind, Max-von-Pettenkofer-Inst.d. LMU Muenchen, Pettenkoferstr. 9a, D- 80336 Muenchen, FRG STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: Y17182 BASE COUNT 755 a 620 c 892 g 613 t 1879 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UCAAGCGAA- --CAAGUGCA UGUGGUGGAU 121 G|CCUUGG|C GAUCAC|AG| GC-GAUGAAG GA|CGCG(GU AG-CC-)U|- GCG-AAACGC 181 UACGGG|-GA GCU(G-GCAA ACG-)AGCUU UG-AUC-CGU AGAUG|UCCG AAUGGG(GAA 241 A)CCC|acuc c---(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----uuuu)- --ggagu-AU CC-AUAGCU( 481 GA-AUACA-- UA)GGC-UAU -GUG--AGG- C-GAAC|GC- GGUGAACU|G A(AACA)UCU 541 AAGUA-ACCG CAGGAAAAGA AAUC(-AACC --)GAGAU|U CC-CAAAGUA GU(GGCGA)G 601 CGA-AAU-GG GA-AGA-GCC U--------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------gua cucuuuauuu guauuguu-a gucGAAc-gc u-c(u-ggaa a)g-ugcggc 781 |c(aua)gcA GG(UGAUAGC )CCUGU-AGA C-gaaaacag uau-gaaaga acuaggugua 841 c--------- ---------- -----GACAA GUAGGGCGGG A(CACGUG-A AA)UCCUGUC 901 UGAAGAU-GG G-GG(GACCA U)CC-UCC-A AGGCUAA--- -AUACUCGUG AUCGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGCGAAAA-G AACCCC(GG- GA-)GGGGA- 1021 -GUGAAA-UA GAUCCUGAAA CCGC-AUGCA UACAA-A-CA GUCGGAGCCU --C------- 1081 --------(- ---guaa--) ---------- -----G-GGG UGACGGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAC-GUUC- AGUAGC-AAG CUUAACC--( -GAAUA)--G 1201 G-GCAGGCGU AGC(GAAA-) GCGAGUCC(G AA-UA)GGGC Gu-------- ---------- 1261 ---------- ------u-CA G-UUGCUGGG CGUA-GACCC GAAAC-CAA- GUGA-UCUAU 1321 CCAUGGC|CA GGAUGAAGGU GCGG(UAAC) AC-GUACUGG AGGUCCGAAC C-CACUAAC( 1381 -GUUGAAAA) GUUAG|GGG- AUGAG-CUGU GGAUAGGGGU (-GAAAG)GC UAAACAAACU 1441 UGGAAAUAGC UGGUUCUCUC CGAAAACUAU (-UUAG)GUA GUGC|-CUCG UGUc----U| 1501 -CAC|CUUCG G|GGGUAG|A GC-ACUGU-C AUGGUUG-GG |GGGUCC(AU UGC)GGAUUA 1561 CCCCGCCAUA -GCAAACUCC GAA-UA-|CC G-A-A-G--A GUGC---AA| UCA-CGGGAG 1621 ACAGAC--AU C-GGGU(GCU AAC)GUCCGG -UGUC-AAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCC- AAA-U-AUAG -C-UAA-GUG ------GGAA ACGAAGUG-G 1741 GAAGGCUAA- AACAGUCAGG AGGUUGGC(U UAGAAGCA)G CCAC-CCU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG AU-----CGA GU-CGU-CC- -UGC|GCGGA AGAU-GUAA- 1861 CGGGGCU-AA GCUAU-A|U| ACCGAAGCU| GCGG|augca ua-----(uu ua-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --uaugcau- GG-UAGGAGA G|-----CGU 2221 U-CCG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCUG-C 2341 GAAGGUG-C- A-UU(-GUAA -)AGU--GUG CUGG|AGGUA U-CGGAAGUG CGAAUGC-UG 2401 AC|AUG-AGU A--GCGAUAA AGGGGG(UGA AAGG)CCCCC U|CGCC-GUA AGCCCAAGGU 2461 UUCCUA-CGC AACG-(UUCA U)CG|G-CGU AGGGUGAGU| CGG|C-CCCU AAGGCGAGGC 2521 A(GAAA)-U- GCGU-AGCUG AUGG-GAAGC AGG-(UC-AA UAUU)C-CUG C|AC|ca-u- 2581 ug-uua-aau ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga u------ggg g--gga-cgg aucgcggaa- gguu-g-|uc c-ggg(ug-- 2761 uuggaa-gu- --)cc-cggu -|cgcu---- ---------- ---gcguugg agaa------ 2821 ---ggca-cu uagg(ca-aa -u-)cc|g-- ggugcagaa- ---------- -uucaagggc 2881 gug--gcg|c ga-|------ ------gcuu c(-uuag--) gaagc----- ------gaag 2941 --caauu--g gaag--ug-| guuccaagaa a-agccuc-u aagcuuca-- ------gu-u 3001 -uaaca--gu g|A|CCGUAC CGCAAACC(G ACACA)GG|U GG-GCGAGA- U-(GAGUA)U 3061 UCUAAGGCGC ||UUGAGAGA ACUCGGGAG- ---------- ----AAGGAA CUCGGCAAAU 3121 UGGUACCGUA AC(-UUCG)G GAUAAGGUAC |GCCCCugua -gcuuga--- ------cugg 3181 c(-cugc-)g ccag------ ---aagggu- gaagggg-U| U(GCA)AUAA ACUGGUG-GC 3241 UG|CGACU-- ---GU(UUAA UAAAA)ACAC AGCACUCUG| CAAACAC(GA AA------)G 3301 UGGACGU-AU AGGGUGUGA- CGCCUGCCCG GU|GCCG-GA A-GAUUAAAU GAUGGG---- 3361 GU-------- (G-CAA)--- --------GC ------UCUU GAUUGAAGUC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-UGGCCAC ACUGUCUCCU CCCGAGACUC 3541 A|GCGAAGUU |GAAGUGU-U UG(UGAUGAU G)CAAUCUCC CCGCGGC-UA GACGGAAAGA 3601 CCCCAUGA|A CCU-UUACUG U|AGCUUUGC AUU|GGACUU UGAACCGAUC UGUGUAGGAU 3661 AGGUGGGAGG CUAUGAAA-- CCGGAAC(GC UA)GUUUCGG UGGAGCCGUC -C-UUGAAAU 3721 ACCACC|CUG G-UUUGUUUG AGG-UUCUAA -CCUUGG--- -CCCG(--ug -auc)-CGGG 3781 UCGGG-GACA GUGCAUGGUA GG-CAGUUUG ACUG(GGG)C GGUC|UCCUC C(CAA-AGUG 3841 UAAC)GGAGG A|G|U|ACGA AGGUACGC|U AGGUACGG(U CGGAAA)UCG UGCUGA-UA| 3901 GU(G|CAAUG )GCAUAAGCG UGCUUAACUG CGAGAC(CGA CAA)GUCGAG CAGGUGC(GA 3961 AA)GC-AGGU |CAUAGUGAU CCGGUGGUUC UG(UAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|UGGG|G AUAACAG|GC UGA--UACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GU-UUGGCAC CUCCAUGUC| GGCU|C|AUC UC|AUCC|UG GGGCU(GUAG 4141 C---C)-GGU CCCAAGGGU| AUGGC(UGUG C)GC-CAUUU AAAGAGGUAC G-UGAGCUGG 4201 GUUUA-AAAC |GUC(GUGA) -GACAGUU-U GGU-CCCUAU -CU|GCCGUG G-G|CG-UUG 4261 GAUAUUU|GA -|AGGGGGC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG AACCUCUGGU GUACCGGU|U GUCAC(GC-C A-)GUGGCA- UCGCCGGGUA 4381 GCU-AUGUUC GGAAGAGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAACU CGCCUU|AAG 4441 AUGAGAUAUC C|CU|GGAGG -(cuuga-)- CCUCC-UUG- AAGG|-GU|C GUUC-(GAGA 4501 CC-A)GGACG -UUGAUAG|G UCAG|GUGUG -UAAGCGCA- -(GUAA-)-- UGCGU|UC-A 4561 GCUA|A|CUG AUACUAAUU- GCCCGUAAG| GCUUGA-UCC U-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS A.faecalis 4759 bp RNA RNA 03-JUL-1997 DEFINITION Alcaligenes faecalis.; 23S ribosomal RNA; 23S rRNA gene. ACCESSION X87282 KEYWORDS 23S ribosomal RNA; 23S rRNA gene. SOURCE Alcaligenes faecalis. ORGANISM Alcaligenes faecalis. REFERENCE 1 (bases 1 to 2896) AUTHORS Bachleitner,M., Klugbauer,N., Springer,N., Lane,D., Nietupsky ,R., Weizenegger,M. and Schleifer,K.H. Ludwig,W., Rossello-Mora,R., Aznar,R., Klugbauer,S., Spring,S ., Reetz,K., Beimfohr,C., Brockmann,E., Kirchhof,G., Dorn,S., TITLE Comparative sequence analysis of 23S rRNA from proteobacteria JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2896) AUTHORS Ludwig,W. TITLE Direct Submission JOURNAL Submitted (18-MAY-1995) W. Ludwig, Lehrstuhl fuer Mikrobiologie, Technische Universitaet Muenchen, Muenchen, FRG STANDARD No information REFERENCE 3 (bases 1 to 2896) AUTHORS Ludwig,W., Rossello-Mora,R., Aznar,R., Klugbauer,S., Spring,S., Reetz,K., Beimfohr,C., Brockmann,E., Kirchhof,G. , Dorn,S., Bachleitner,M., Klugbauer,N., Springer,N., Lane, D., Nietupsky,R., Weizenegger,M. and Schleifer,K.H. TITLE Comparative sequence analysis of 23S rRNA from proteobacteria JOURNAL Syst. Appl. Microbiol. 18, 164-188 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X87282 BASE COUNT 767 a 628 c 887 g 614 t 1863 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- -guuauag|- --------GA UCAAGCGAA- --UAAGUGCA UAUGAUGGAU 121 G|CCUUGG|C GAUCAC|AG| GC-GAUGAAG GA|CGCG(GU AG-CC-)U|- GCG-AAAAGC 181 UACGGG|-GA GCU(G-GCAA ACA-)AGCUU UG-AUC-UGU AGAUG|UCCG AAUGGG(GAA 241 A)CCC|accg ua--(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----guaa)- -uacggu-AU CC-CAUGCU( 481 CA-AUACA-- UA)GGC-AUG -U-G--GAG- C-GAAC|CG- AGUGAACU|G A(ACCA)UCU 541 CAGUA-ACUC GAGGAAAAGA AAUC(-AACC --)GAGAU|U CC-GGAAGUA GU(GGCGA)G 601 CGA-AAC-CG GA-CCA-GCC U--------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------gga uguuuuagcg uagugaau-a gucGAAu-gg a-a(u-ggaa a)g-uccagc 781 |c(gua)gcA GG(UGAUAGC )CCUGU-aGG C-gaaauuca gua-cgugga acuaagcauc 841 g--------- ---------- -----AACAA GUAGGGCGGG A(CACGUG-A AA)UCCUGUC 901 UGAAUAU-GG G-GG(GACCA U)CC-UCC-A AGGCUAA--- -AUACUCGUG AUCGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGCGAAAA-G AACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-UA GAUCCUGAAA UCGU-AUGCA UACAA-A-CA GUAGGAGCAC --C------- 1081 --------(- ---uucgu-) ---------- -----G-GUG UGACUGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAC-AUUC- AGUGGC-AAG CUUAACC--( -GAAUA)--G 1201 G-GGAGGCGU AGC(GAAA-) GCGAGUCC(G AA-UA)GGGC Gau------- ---------- 1261 ---------- ------u-CA G-UCGCUGGG UGUA-GACCC GAAAC-CAG- GCGA-UCUAU 1321 CCAUGGC|CA GGUUGAAGGC ACGG(UAAC) AC-GUGCUGG AGGACCGAAC C-CACUAAU( 1381 -GUUGAAAA) AUUAG|GGG- AUGAG-CUGU GGAUCGGAGU (-GAAAG)GC UAAACAAGCC 1441 UGGAGAUAGC UGGUUCUCUC CGAAAACUAU (-UUAG)GUA GUGC|-CUCG UAUa----U| 1501 -UAC|UGCCG G|GGGUAG|A GC-ACUGU-U AUGGCUA-GG |-GGGUC(ac agc)GACUUA 1561 CCAACCCAUG -GCAAACUCC GAA-UA-|CC G-G-C-A--A GUAC----A| GUA-CGGGAG 1621 ACAGAG-CAC C-GGGU(GCU AAC)GUCCGG -ACUC-AAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCU- AAC-U-AUGG -C-UAA-GUG ------GGAA ACGAAGUG-G 1741 GAAGGCAUA- GACAGUCAGG AGGUUGGC(U UAGAAGCA)G CCAU-CCU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG AU-----CGA GU-CGU-CC- -UGC|GCGGA AGAU-GUAA- 1861 CGGGGCU-AA GCCAU-A|G| ACCGAAGCU| GCGG|augug uac----(ua u--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -guacacau- GG-UAGGAGA G|-----CGU 2221 U-CCG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCUG-U 2341 GAAGGUG-U- U-CC(-GUGA -)GGA--AUG CUGG|AGGUA U-CGGAAGUG AGAAUGC-UG 2401 AC|AUG-AGU A--GCGAUAA AGGGGG(UGA AAAG)CCCCC U|CGCC-GUA AGUCCAAGGU 2461 UUCCUG-CGC AACG-(UUCA U)CG|G-CGC AGGGUGAGU| CGG|C-CCCU AAGGCGAGGC 2521 A(GAGA)-U- GCGU-AGCUG AUGG-GAAGC GGG-(UU-AA UAUU)C-CCG C|AC|cg-u- 2581 cg-uag-agu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga u------ggg g--gga-cgg auugcagaa- uguu-a-|uc g-ggg(ug-- 2761 uuggau-gu- --)cc-ccgu -|uggc---- ---------- ---gcaucau agaa------ 2821 ---ggca-cu uagg(ca-aa -u-)cc|g-- ggugcguaa- ---------- -uucaagggu 2881 gug-acug|- ga-|------ -----uagag c(-uucg--) gcucua---- -------aac 2941 --uaacu--g gaag--ca-| guuccaagaa a-agccuc-u aagcuuca-- ------gc-u 3001 -cuacg--a- g|A|CCGUAC CGCAAACC(G ACACA)GG|U GG-ACGGGA- U-(GAAUA)U 3061 UCCAAGGCGC ||UUGAGAGA ACUCAGGAG- ---------- ----AAGGAA CUCGGCAAAU 3121 UAAUACCGUA AC(-UUCG)G GAGAAGGUAU |GCCUCauua -guguga--- ------ugug 3181 c(-cugc-)g caca------ ---aagcau- gaagagg-C| C(GCA)GUGA AUCGGUG-GC 3241 UG|CGACU-- ---GU(UUAC UAAAA)ACAC AGCACUCUG| CAAACAC(GA AA------)G 3301 UGGACGU-AU AGGGUGUGA- CGCCUGCCCG GU|GCCG-GA A-GGUUAAGU GAUGGG---- 3361 GU-------- (G-CAA)--- --------GC ------UCUU GAUCGAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-UGGCCAC ACUGUCUCCU CCUGAGACUC 3541 A|GCGAAGUU |GACAUGG-U UG(UGAUGAU G)CAAUCUCC CCGCGGC-UA GACGGAAAGA 3601 CCCCAUGA|A CCU-UUACUG U|AGCUUUGC AUU|GGAUUG UGAACCGGCC UGUGUAGGAU 3661 AGGUGGGAGA CGUUGAAG-- CGUGGUC(GC CA)GAUCGCG UGGAGUCAUC -C-UUGAAAU 3721 ACCACC|CUG G-UCUGUUUG CGG-UUCUAA -CCUAGG--- -UCCC(--UU -AUC)-GGGA 3781 UCGGG-GACC GUGCAUGGUG GG-CAGUUUG ACUG(GGG)C GGUC|UCCUC C(UAA-AGUG 3841 UAAC)GGAGG A|G|U|UCGA AGGUACGC|U AGAGACGG(U CGGAAA)UCG UCUUGA-UA| 3901 GU(G|CAAUG )GCAUAAGCG UGCUUGACUG UGAGAC(UGA CAA)GUCGAA CAGGUAC(GA 3961 AA)GU-AGGA |CAUAGUGAU CCGGUGGUUC UG(UAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|UGGG|G AUAACAG|GC UGA--UACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC UC|AUCC|UG GGGCU(GUAG 4141 C---C)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGAGGUAC G-UGAGCUGG 4201 GUUUA-AAAC |GUC(GUGA) -GACAGUU-U GGU-CCCUAU -CU|GCCGUG G-G|CG-UUG 4261 GAUAUUU|GA -|CGGA-GCC UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG UACCACUGGU GUAUCGGU|U GUCAU(GC-C A-)AUGGCA- UUGCCGAGUA 4381 GCU-ACGUAC GGAAGAGAUA ACCGCU(GAA GGCAUCUA)A GCGGGAAACU CGUCUG|AAG 4441 AUUAGAUAUC C|C-|GGAGG -(cuuga-)- CCUCC-CUG- UAGG|-GU|C GUCC-(GAGA 4501 CC-A)GGACG -UUGAUAG|G CUGG|GUGUG -GAAGUGCA- -(GUAA-)-- UGCAU|GU-A 4561 GCUA|A|CCA GUACUAAUU- GCCCGUGUG| GCUUGA-UCC U-------|a uaaccc---- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS B.avium 4759 bp RNA RNA 11-JAN-191 DEFINITION Bordetella avium. ACCESSION No information KEYWORDS No information. SOURCE Bordetella avium. ORGANISM Bordetella avium. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X70370 ID BA23SRRA standard; DNA; PRO; 2867 BP. XX AC X70370; XX DT 23-FEB-1993 (Rel. 35, Created) DT 23-FEB-1993 (Rel. 35, Last updated, Version 1) XX DE B.avium gene for 23S rRNA XX KW 23S ribosomal RNA. XX OS Bordetella avium OC Prokaryota; Bacteria; Gracilicutes; Scotobacteria; OC Aerobic rods and cocci; Alcaligenaceae. XX RN [1] RA Mueller M.; RT ; RL Unpublished. XX RN [2] RP 1-2867 RA Mueller M.; RT ; RL Submitted (09-FEB-1993) on tape to the EMBL Data Library by: RL M. Mueller, University of Bremen, Dept. of Biology, FB2, AG RL Hildebrandt, D-2800 Bremen 33, FRG XX CC *source: tissue_library=ATCC 35086; XX FH Key Location/Qualifiers FH XX SQ Sequence 2867 BP; 753 A; 621 C; 889 G; 603 T; 1 other; BASE COUNT 753 a 621 c 889 g 603 t 1893 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GA UCAAGCGAC- --UAAGUGCA CAUGGUGGAU 121 G|CCUUGG|C GAUCAC|AG| GC-GAUGAAG GA|CGUG(GU AG-CC-)U|- GCG-AAAAGC 181 UACGGG|-GA GCU(G-GCAA ACA-)AGCUU UG-AUC-CGU AGAUG|UCCG AAUGGG(GAA 241 A)CCC|acgc ----(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----gcaa)- --gcagu-AU CC-CUGGCU( 481 GA-AUACA-- UA)GGU-CAG ug-G--AAG- C-GAAC|CG- GGUGAACU|G A(AACA)UCU 541 CAGUA-GCUC GAGGAAAAGA AAUC(-AACC --)GAGAU|U CC-GAUAGUA GU(GGCGA)G 601 CGA-AAU-CG GA-AGA-GCC U--------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------uua cgauuuagcc auccguau-a a-cGAAc-ag u-c(u-ggaa c)g-ucuggc 781 |c(gua)gcA GG(UGAUAGC )CCUGU-Aga u-ga-augcg g-u-ggugga acua-gcgua 841 a--------- ---------- -----GAGAA GUAGGGCGGG A(CACGUG-A AA)UCCUGUU 901 UGAAGAU-GG G-GG(GACCA U)CC-UCC-A AGGCUAA--- -AUACUCGUG AUCGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GG-A-AA GGCGAAAA-G AACCCC(GG- AA-)--GGA- 1021 -GUGAAA-UA GAUCCUGAAA CCGU-GUGCA UACA--A-CA GUCGGAGCCU --C------- 1081 --------(- ---cuugu-) ---------- -----G-GGG UGACGGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAC-AUUC- AGUGGC-AAG CUUAACC--( -GAAUA)--G 1201 G-GAAGGCGU CA-(GAANA) GC-AGUCC(G AA-UA)GGGC GU-------- ---------- 1261 ---------- ------u-gA G-UCGCUGGG UGUA-GACCC GAAAC-CAG- AUGA-UCUAC 1321 CCAUGGC|CA GGUUGAAGGC ACGU(GAAC) AC-GUGUUGG AGGACCGAAC C-CACUAGU( 1381 -GUUGAAAA) ACUAG|GGG- AUGAG-CUGU GGAUAGGGGU (-GAAAG)GC UAAACAAAUC 1441 UGGAAAUAGC UGGUUCUCUC CGAAAACUAU (-UUAG)GUA GUGC|-CUCA AGua----U| 1501 -UAC|UGCAG G|GGGUAG|A GC-ACUGU-U AUGGCUA-GG |-GGGUA(cu ggc)GACUUA 1561 CCAAACCAUG -GCAAACUCC GAA-UA-|CC U-G-C-A--A GUAC----A| GCU-UGGGAG 1621 ACAGAC-GAC C-GGGU(GCU AAC)GUCCGG -ACUC-AAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAU-U-AUCA -C-UAA-GUG ------GGAA ACGAAGUG-G 1741 GAAGGCAUA- GACAGUCAGG AGGUUGGC(U UAGAAGCA)G CCAC-CCU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG AU-----CGA GU-CGU-CC- -UGC|GCGGA AGAU-GUAA- 1861 C-GG-CU-AA GUGAU-A|A| ACCGAAGCU| GCGG|gugug uacu---(uu u--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -aguacagc- GG-UAGGAGA G|-----CGU 2221 U-CUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCUG-C 2341 GAAGGUG-G- C-UU(-GUGA -)AGG--CUG CUGG|AGGUA U-CAGAAGUG CGAAUGC-UG 2401 AC|AUG-AGU A--GCGAUAA AGGGGG(UGA AAAG)CCCCC U|CGCC-GUA AGUCCAAGGU 2461 UUCCUG-CGC AACG-(UUCA U)CG|G-CGC AGGGUGAGU| CGG|C-CCCU AAGGCGAGGC 2521 A(GAGA)-U- GCGU-AGCUG AUGG-GAAGC UGG-(UU-AA UAUU)C-CAG C|AC|cg-u- 2581 cg-uac-agu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga u------ggg g--gga-cgg aucgcggaa- gauc-a-|uc a-ggg(ug-- 2761 uuggau-gu- --)cc-cugu -|ugcu---- ---------- ---gcauuga agau------ 2821 ---ggcg-cu uagg(ca-aa -u-)cc|g-- ggcgcguaa- ---------- -aucaagggu 2881 gug--gcu|c ga-|------ ------gcga g(-caugu-) cucgc----- ------gaag 2941 --ugauu-g- gaag--ug-| guuccaagaa a-agccuc-u aagcuuca-- ------gc-u 3001 -guacg--a- g|A|CCGUAC CGCAAACC(G ACACA)GG|U GGGACGGGA- U-(GAAUA)U 3061 UCCAAGGCGC ||UUGAGAGA ACUC-GGAG- ---------- ----AAGGAA CUCGGCAAAU 3121 UAAUACCGUA AC(-UUCG)G GAGAAGGUAU |GCCCCggua -guguga--- -------agc 3181 c(-ugcg-)c gcu------- ---gagcau- gaugggg-U| C(GCA)GAGA AUCGGUG-GC 3241 UG|CGACU-- ---GU(UUAU UAAAA)ACAC AGCACUCUG| CAAAGAC(GA AA------)G 3301 UCGACGU-AU AGGGUGUGA- CGCCUGCCCG GU|GCCG-GA A-GGUUAAGU GAUGGG---- 3361 GU-------- (G-CAA)--- --------GC ------UCUU GAUCGAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-UGGCCAC ACUGUCUCCU CCCGAGACUC 3541 A|GCGAAGUU |GAAGUGU-U UG(UGAUGAU G)CAAUCUAC CCGCGGC-UA GACGGAAAGA 3601 CCCCAUGA|A CCU-UUACUG U|AGCUUUGC AUU|GAACUG UGAACCGGCC UGUGUAGGAU 3661 AGGUGGGAGG CGCAGAAC-- UCGAGUC(GC CA)GAUUCGA GGGAGCCG-C -C-UUGAAAU 3721 ACCACC|CUG G-UUUGUUUG CGG-UUCUAA -CCUUGG--- -UCCG(--UU -AUC)-CGGA 3781 UCGGG-GACA GUGCAUGGUG GG-CAGUUUG ACUG(GGG)C GGUC|UCCUC C(CAA-AGUG 3841 UAAC)GGAGG A|G|C|UCGA AGGUACGC|U AGGUACGG(U CGGAAA)UCG UGCUGA-UA| 3901 GU(G|CAAUG )GCAUAAGCG UGCUUGACUG UGAGAC(UGA CA-)GUCGCA CAGGAGC(GA 3961 A-)-C-GGGA |CAUAGUGAU CCGGUGGUUC UG(AAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAA-GGUA CUC|UGGG|- AUAACAG|GC UGA--UACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC UC|AUCC|U- GGGCU(GUAG 4141 C---C)-GGU CC-AAGGGU| AUG-C(UGUU C)GC-CAUUU AAAGAGGUAC G-UGAGCUGG 4201 GUUUA-AAAC |GUC(GUGA) -GACAGUU-U GGU-CCCUAU -CU|GCCGUG G-G|CG-UUG 4261 GAUACUU|GA A|CAGGAGCC UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG UACCUCUGGU GUACCGGU|U GUCAU(GC-C A-)AU-GCA- UUGCCGGGUA 4381 GCU-AAGUAC G-AAGAGAUA ACCGCU(GAA GGCAUCUA)A GCGG-AAACU CGUCUG|AAG 4441 AUUAGGUAUC C|C-|AGAGA -(cuaga-)- ucucu-CUA- AAGG|-GU|C GUUC-(AAGA 4501 CC-A)GGACG -UUGAUAG|G UCGG|GUGUG -GA-AGGCA- -(GUAA-)-- UGCGU|UA-A 4561 GCUA|A|CCG AUACUAAUU- GCC-GUGCG| GCUUGA-UCC U-------|a uaacucuuua 4621 g~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS B.bronchis 4759 bp RNA RNA 11-JAN-191 DEFINITION Bordetella bronchiseptica. ACCESSION No information KEYWORDS No information. SOURCE Bordetella bronchiseptica. ORGANISM Bordetella bronchiseptica. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X70371 ID BB23SRRA standard; DNA; PRO; 2880 BP. XX AC X70371; XX DT 23-FEB-1993 (Rel. 35, Created) DT 23-FEB-1993 (Rel. 35, Last updated, Version 1) XX DE B.bronchiseptica gene for 23S rRNA XX KW 23S ribosomal RNA. XX OS Bordetella bronchiseptica OC Prokaryota; Bacteria; Gracilicutes; Scotobacteria; OC Aerobic rods and cocci; Alcaligenaceae. XX RN [1] RA Mueller M.; RT ; RL Unpublished. XX RN [2] RP 1-2880 RA Mueller M.; RT ; RL Submitted (09-FEB-1993) on tape to the EMBL Data Library by: RL M. Mueller, University of Bremen, Dept. of Biology, FB2, AG RL Hildebrandt, D-2800 Bremen 33, FRG XX CC *source: tissue_library=ATCC 19395; XX FH Key Location/Qualifiers FH XX SQ Sequence 2880 BP; 761 A; 628 C; 900 G; 590 T; 1 other; BASE COUNT 761 a 628 c 900 g 590 t 1880 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GA UCAAGCGAC- --UAAGUGCA UAUGGUGGAU 121 G|CCUUGG|C GAUCAC|AG| GCGGAUGAAG GA|CGUA(GU AG-CC-)U|- GCG-AAAAGC 181 UGCGGG|-GA GCU(G-GCAA ACA-)AGCAU UG-AUC-CGC AGAUA|UCCG AAUGGG(GAA 241 A)CCC|acg- ----(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----gcaa)- --gcggu-AU CC-CUGGCU( 481 GA-AUACA-- UA)GGC-CAG ug-G--AGG- C-GAAC|CG- GGUGAACU|G A(AACA)UCU 541 CAGUA-GCUC GAGGAAAAGA AAUC(-AACC --)GAGAU|U CC-GAAAGUA GU(GGCGA)G 601 CGA-AAU-CG GA-AGA-GCC U--------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------uua cgauuuagca uuuugcau-a gucGAAc-gg a-a(u-ggaa a)g-uccggc 781 |c(gua)gcA GG(UGAUAGC )CCUGU-Aga c-ga-augca gag-ugugga acuaggcgua 841 a--------- ---------- -----GAGAA GUAGGGCGGG A(CACGUG-A AA)UCCUGUC 901 UGAAGAU-GG G-GG(GACCA U)CC-UCC-A AGGCUAA--- -AUACUCGUG AUCGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GG-A-AA GGCGAAAA-G AACCCC(GG- AA-)--GGA- 1021 -GUGAAA-UA GAUCCUGAAA CCGU-AUGCA UACA--A-CA GUCGGAGCCU --C------- 1081 --------(- ---uuuau-) ---------- -----G-GGG UGACGGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAC-AUUC- AGUGGC--AG CUUAACC--( -GAAUA)--G 1201 G-GAAGGCGU CA-(GAANA) GC-AGUCC(G AA-UA)GGGC GU-------- ---------- 1261 ---------- -----uc-cA G-UCGCUGGG UGUA-GACCC GAAAC-CAG- AUGA-UCUAC 1321 CCAUGGC|CA GGUUGAAGGC ACGG(UAAC) AC-GUGCUGG AGGACCGAAC C-CACUAGU( 1381 -GUUGAAAA) ACUAG|GGG- AUGAG-CUGU GGAUAGGGGU (-GAAAG)GC UAAACAAAUC 1441 UGGAAAUAGC UGGUUCUCUC CGAAAACUAU (-UUAG)GUA GUGC|-CUCA AGua----U| 1501 -UAC|UGCAG G|GGGUAG|A GC-ACUGU-U AUGGCUA-GG |-GGGUC(au ggc)GACUUA 1561 CCAAACCAUG -GCAAACUCC GAA-UA-|CC U-G-C-A--A GUAC----A| GCU-UGGGAG 1621 ACAGAC-GAC C-GGGU(GCU AAC)GUCCGG -ACUC-AAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCG- AAU-U-AUCG -C-UAA-GUG ------GGAA ACGAAGUG-G 1741 GAAGGCAUA- GACAGUCAGG AGGUUGGC(U UAGAAGCA)G CCAC-CCU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG AU-----CGA GU-CGU-CC- -UGC|GCGGA AGAU-GUAA- 1861 C-GG-CU-AA GCGAU-A|A| ACCGAAGCU| GCGG|gugug cacu---(uu u--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -agugcagc- GG-UAGGAGA G|-----CGU 2221 U-CUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCUG-C 2341 GAAGGUG-G- C-UU(-GUAA -)AGG--CUG CUGG|AGGUA U-CAGAAGUG CGAAUGC-UG 2401 AC|AUG-AGU A--GCCAUAA AGGGGG(UGA AAAG)CCCCC U|CGCC-GUA AGUCCAAGGU 2461 UUCCUG-CGC AACG-(UUCA U)CG|G-CGC AGGGUGAGU| CGG|C-CCCU AAGGCGAGGC 2521 A(GAGA)-U- GCGU-AGCUG AUGG-GAAGC UGG-(UU-AA UAUU)C-CAG C|AC|cg-u- 2581 cg-uac-agu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga u------ggg g--gga-cgg aucgcggaa- gguc-a-|uc a-ggg(ug-- 2761 uuggac-gu- --)cc-cugu -|ugcu---- ---------- ---gcauuga agau------ 2821 ---ggcg-cu uagg(ca-aa -u-)cc|g-- ggcgcgaga- ---------- -aucaagggu 2881 gug--gca|c ga-|------ ------gcga g(-caagu-) cucgc----- ------gaag 2941 --ugauu-g- gaag--ug-| guuccaagaa a-agccuc-u aagcuuca-- ------gc-u 3001 -guacg--a- g|A|CCGUAC CGCAAACC(G ACACA)GG|U GGGACGGGA- U-(GAAUA)U 3061 UCCAAGGCGC ||UUGAGAGA ACUCAGGAG- ---------- ----AAGGAA CUCGGCAAAU 3121 UGAUACCGUA AC(-UUCG)G GAGAAGGUAU |ACCCUggua -guguga--- -------agc 3181 c(-ugcg-)c gcu------- ---gagcau- gaagggg-U| C(GCA)GAGA AUCGGUG-GC 3241 UG|CGACU-- ---GU(UUAU UAAAA)ACAC AGCACUCUG| CAAAGAC(GA AA------)G 3301 UCGACGU-AU AGGGUGUGA- CGCCUGCCCG GU|GCCG-GA A-GGUUAAGU GAUGGG---- 3361 GU-------- (G-CAA)--- --------GC ------UCUU GAUCGAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-UGGCCAC ACUGUCUCCU CCUGAGACUC 3541 A|GCGAAGUU |GAAGUGU-U UG(UGAUGAU G)CAAUCUAC CCGCGGC-UA GACGGAAAGA 3601 CCCCAUGA|A CCU-UUACUG U|AGCUUUGC AUU|GGACUG UGAACCGGCC UGUGUAGGAU 3661 AGGUGGGAGG CGCAGAAC-- UCGAGUC(GC CA)GAUUCGA GGGAGCCAUC -C-UUGAAAU 3721 ACCACC|CUG G-UUUGUUUG CGG-UUCUAA -CCUUGG--- -UCCG(--UU -AUC)-CGGA 3781 UCGGG-GACA GUGCAUGGUA GG-CAGUUUG ACUG(GGG)C GGUC|UCCUC C(CAA-AGCG 3841 UAAC)GGAGG A|G|U|UCGA AGGUACGC|U AGGUACGG(U CGGAAA)UCG UGCUGA-UA| 3901 GU(G|CAAUG )GCAUAAGCG UGCUUGACUG UGAGAC(UGA CA-)GUGA-A CAGGUGC(GA 3961 A-)-C-GGGA |CAUAGUGAU CCGGUGGUUC UG(-AUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAA-GGUA CUC|UGGG|- AUAACAG|GC UGA--UACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC UC|AUCC|UG GGGCU(GAAG 4141 C---A)-GGU CC-AAGGGU| AUG-C(UGUU C)GC-CAUUU AAAGAGGUAC GcUGAGCUGG 4201 GUUUAGAAAC |GUC(GUGA) -GACAGUUCU GGU-CCCUAU -CU|GCCGUG G-G|CGcUUG 4261 GAAACUU|GA G|CAGGAACC UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG UACCUCUGGU GUACCGGU|U GUCAU(GC-C A-)AUGGCA- UUGCCGGGUA 4381 GCU-AAGUAC GGAAGAGAUA ACCGCU(GAA GGCAUCUA)A GCGGGAAACU CGUCUG|AAG 4441 AUUAGGUAUC C|C-|GGGGA -(cuaga-)- ucccc-CUG- AAGG|-GU|C GUUC-(GAGA 4501 CC-A)GGACG -UUGAUAG|G UCGG|GUGUG -GAAGCGCA- -(GUAA-)-- UGCGU|UA-A 4561 GCUA|A|CCG AUACUAAUU- GCCCGUGAG| GCUUAA-UCC U-------|a uaacucucaa 4621 g~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS B.parapert 4759 bp RNA RNA 11-JAN-191 DEFINITION Bordetella parapertussis. ACCESSION No information KEYWORDS No information. SOURCE Bordetella parapertussis. ORGANISM Bordetella parapertussis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X68368 ID BP23SRRA standard; DNA; PRO; 3013 BP. XX AC X68368; XX DT 14-OCT-12 (Rel. 33, Created) DT 14-OCT-1992 (Rel. 33, Last updated, Version 1) XX DE B.parapertussis gene for 23S ribosomal RNA XX KW 23S ribosomal RNA. XX OS Bordetella parapertussis OC Prokaryota; Bacteria; Gracilicutes; Scotobacteria; OC Aerobic rods and cocci; Alcaligenaceae. XX RN [1] RP 1-3013 RA Mueller M.; RT ; RL Submitted (22-SEP-1992) on tape to the EMBL Data Library by: RL M. Mueller, University of Bremen, Dept of Biology, FB2 AG RL Hildebrandt, 2800 Bremen 33, FRG XX RN [2] RP 1-3013 RA Mueller M.; RT ; RL Unpublished. XX CC *source: tissue_library=ATCC 15311; XX FH Key Location/Qualifiers FH FT rRNA <1..>3013 FT /gene="23S rRNA" /product="23S ribosomal RNA" XX SQ Sequence 3013 BP; 796 A; 672 C; 927 G; 616 T; 2 other; BASE COUNT 796 a 672 c 927 g 616 t 1748 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GA UCAAGCGAC- --UAAGUGCA UAUGGUGGAU 121 G|CCUUGG|C GAUCAC|AG| GC-GAUGAAG GA|CGUA(GU AG-CC-)U|- GCG-AAAAGC 181 UGCGGG|-GA GCU(G-GCAA ACA-)AGCAU UG-AUC-CGC AGAUA|UCCG AAUGGG(GAA 241 A)CCC|acg- ----(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----gcaa)- --gcggu-AU CC-CUGGCU( 481 GA-AUACA-- UA)GGC-CAG ug-G--AGG- C-GAAC|CG- GGUGAACU|G A(AACA)UCU 541 CAGUA-GCUC GAGGAAAAGA AAUC(-AACC --)GAGAU|U CC-GAAAGUA GU(GGCGA)G 601 CGA-AAU-CG GA-AGA-GCC U--------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------uua cgauuuagca uuuugcau-a gucGAAc-gg a-a(u-ggaa a)g-uccggc 781 |c(gua)gcA GG(UGAUAGC )CCUGU-Aga c-gaaaugca gag-ugugga acuaggcgua 841 a--------- ---------- -----GAGAA GUAGGGCGGG A(CACGUG-A AA)UCCUGUC 901 UGAAGAU-GG G-GG(GACCA U)CC-UCC-A AGGCUAA--- -AUACUCGUG AUCGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GG-A-AA GGCGAAAA-G AACCCC(GG- AA-)--GGA- 1021 -GUGAAA-UA GAUCCUGAAA CCGU-AUGCA UACAA-A-CA GUCGGAGCCU --C------- 1081 --------(- ---uuuau-) ---------- -----G-GGG UGACGGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAC-AUUC- AGUGGC-GAG CUUAACC--( -GAAUA)--G 1201 G-GAAGGCGU CA-(gaana) GCAgnUCC(G AA-UA)GGGC GU-------- ---------- 1261 ---------- ------c-CA G-UCGCUGGG UGUA-GACCC GAAAC-CAG- AUGA-UCUAC 1321 CCAUGGC|CA GGUUGAAGGC ACGG(UAAC) AC-GUCGUGG AGGACCGAAC C-CACUAGU( 1381 -GUUGAAAA) ACUAG|GGG- AUGAG-CUGU GGAUAGGGGU (-GAAAG)GC UAAACAAAUC 1441 UGGAAAUAGC UGGUUCUCUC CGAAAACUAU (-UUAG)GUA GUGC|-CUCA AGua----U| 1501 -UAC|UGCAG G|GGGUAG|A GC-ACUGU-U AUGGCUA-GG |-GGGUC(au ggc)GACUUA 1561 CCAAACCAUG -GCAAACUCC GAA-UA-|CC U-G-C-A--A GUAC----A| GCU-UGGGAG 1621 ACAGAC-GAC C-GGGU(GCU AAC)GUCCGG -ACUC-AAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCG- AAU-U-AUCG -C-UAA-GUG ------GGAA ACGAAGUG-G 1741 GAAGGCAUA- GACAGUCAGG AGGUUGGC(U UAGAAGCA)G CCAC-CCU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG AU-----CGA GU-CGU-CC- -UGC|GCGGA AGAU-GUAA- 1861 CGGGGCU-AA GCGAU-A|A| ACCGAAGCU| GCGG|gugug cacu---(uu u--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- agu-caggcg GG-UAGGAGA G|-----CGU 2221 U-CUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCUG-C 2341 AAAGGUG-G- C-UU(-GUAA -)AGG--CUG CUGG|AGGUA U-CAGAAGUG CGAAUGC-UG 2401 AC|AUG-AGU A--GCGAUAA AGGGGG(UGA AAAG)CCCCC U|CGCC-GUA AGUCCAAGGU 2461 UUCCUG-CGC AACG-(UUCA U)CG|G-CGC AGGGUGAGU| CGG|C-CCCU AAGGCGAGGC 2521 A(GAGA)-U- GCGU-AGCUG AUGG-GAAGC UGG-(UU-AA UAUU)C-CAG C|AC|cg-u- 2581 cg-uac-agu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga u------ggg g--gga-cgg aucgcggaa- gguc-a-|uc a-ggg(ug-- 2761 uuggac-gu- --)cc-cugu -|ugcu---- ---------- ---gcauuga agau------ 2821 ---ggcg-cu uagg(ca-aa -u-)cc|g-- ggcgcgaga- ---------- -aucaagggu 2881 gug--gca|c ga-|------ ------gcga g(-caagu-) cucgc----- ------gaag 2941 --ugauu-g- gaag--ug-| guuccaagaa a-agccuc-u aagcuuca-- ------gc-u 3001 -guacg--a- g|A|CCGUAC CGCAAACC(G ACACA)GG|U GGGACGGGA- U-(GAAUA)U 3061 UCCAAGGCGC ||UUGAGAGA ACUCAGGAG- ---------- ----AAGGAA CUCGGCAAAU 3121 UGAUACCGUA AC(-UUCG)G GAGAAGGUAU |ACCCUggua -guguga--- -------agc 3181 c(-ugcg-)c gcu------- ---gagcau- gaagggg-U| C(GCA)GAGA AUCGGUG-GC 3241 UG|CGACU-- ---GU(UUAU UAAAA)ACAC AGCACUCUG| CAAAGAC(GA AA------)G 3301 UCGACGU-AU AGGGUGUGA- CGCCUGCCCG GU|GCCG-GA A-GGUUAAGU GAUGGG---- 3361 GU-------- (G-CAA)--- --------GC ------UCUU GAUCGAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-UGGCCAC ACUGUCUCCU CCUGAGACUC 3541 A|GCGAAGUU |GAAGUGU-U UG(UGAUGAU G)CAAUCUAC CCGCGGC-UA GACGGAAAGA 3601 CCCCAUGA|A CCU-UUACUG U|AGCUUUGC AUU|GGACUG UGAACCGGCC UGUGUAGGAU 3661 AGGUGGGAGG CGCAGAAC-- UCGAGUC(GC CA)GAUUCGA GGGAGCCAUC -C-UUGAAAU 3721 ACCACC|CUG G-UUUGUUUG CGG-UUCUAA -CCUUGG--- -UCCG(--UU -AUC)-CGGA 3781 UCGGG-GACA GUGCAUGGUA GG-CAGUUUG ACUG(GGG)C GGUC|UCCUC C(CAA-AGCG 3841 UAAC)GGAGG A|G|U|UCGA AGGUACGC|U AGGUACGG(U CGGAAA)UCG UGCUGA-UA| 3901 GU(G|CAAUG )GCAUAAGCG UGCUUGACUG UGAGAC(UGA CA-)GUCGAA CAGGUGC(GA 3961 A-)-C-GGGA |CAUAGUGAU CCGGUGGUUC UG(-AUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAA-GGUA CUC|UGGG|- AUAACAG|GC UGA--UACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC UC|AUCC|UG GGGCU(GAAG 4141 C---A)-GGU CC-AAGGGU| AUG-C(UGUU C)GC-CAUUU AAAGAGGUAC GCUGAGCUGG 4201 GUUUAGAAAC |GUC(GUGA) AGACAGUUGU GGU-CCCUAU -CU|GCCGUG G-G|CGCUUG 4261 GAAACUU|GA g|CAGGAACC UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG UACCUCUGGU GUACCGGU|U GUCAU(GC-C A-)AUGGCA- UUGCCGGGUA 4381 GCU-AAGUAC GGAAGAGAUA ACCGCU(GAA GGCAUCUA)A GCGG-AAACU CGUCUG|AAG 4441 AUUAGGUAUC C|C-|GGGA- -(cuaga-)- -UCCCCCUG- AAGG|-GU|C GUUC-(GAGA 4501 CC-A)GGACG -UUGAUAG|G UCGG|GUGUG -GAAGCGCA- -(GUAA-)-- UGCGU|UA-A 4561 GCUA|A|CCG AUACUAAUU- GCCCGUGAG| GCUUGA-UCC U-------|a uaacucucaa 4621 gucuuaauua uuaccgcugg acaguaacgc cagcgccguu cauaccaaca caacauacac 4681 agcaacccgu cgcugccagu cccaaccgac ugccaggcga cgcugugcuu cuuccagauu 4741 caagccguu~ ~~~|||||| // LOCUS B.pertussi 4759 bp RNA RNA 11-JAN-191 DEFINITION Bordetella pertussis. ACCESSION No information KEYWORDS No information. SOURCE Bordetella pertussis. ORGANISM Bordetella pertussis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X68323 ID BPG23S standard; DNA; PRO; 3009 BP. XX AC X68323; XX DT 22-SEP-1992 (Rel. 33, Created) DT 22-SEP-1992 (Rel. 33, Last updated, Version 1) XX DE B.pertussis gene for 23S ribosomal RNA XX KW 23S ribosomal RNA. XX OS Bordetella pertussis OC Prokaryota; Bacteria; Gracilicutes; Scotobacteria; OC Aerobic rods and cocci; Alcaligenaceae. XX RN [1] RP 1-3009 RA Mueller M.; RT ; RL Submitted (10-SEP-1992) on tape to the EMBL Data Library by: RL M. Mueller, Dept of Biology, FB2 AG Hildelbrandt, University of RL Bremen, D-2800 Bremen 33, FRG XX RN [2] RP 1-3009 RA Mueller M.; RT ; RL Unpublished. XX CC *source: strain=Tohama; XX FH Key Location/Qualifiers FH FT rRNA 1..3009 FT /product="23S ribosomal RNA" XX SQ Sequence 3009 BP; 793 A; 669 C; 927 G; 618 T; 2 other; BASE COUNT 793 a 669 c 927 g 618 t 1752 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GA UCAAGCGAC- --UAAGUGCA UAUGGUGGAU 121 G|CCUUGG|C GAUCAC|AG| GC-GAUGAAG GA|CGUA(GU AG-CC-)U|- GCG-AAAAGC 181 UGCGGG|-GA GCU(G-GCAA ACA-)AGCAU UG-AUC-CGC AGAUA|UCCG AAUGGG(GAA 241 A)CCC|acg- ----(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----gcaa)- --gcggu-AU CC-CUGGCU( 481 GA-AUACA-- UA)GGC-CAG ug-G--AGG- C-GAAC|CG- GGUGAACU|G A(AACA)UCU 541 CAGUA-GCUC GAGGAAAAGA AAUC(-AACC --)GAGAU|U CC-GAAAGUA GU(GGCGA)G 601 CGA-AAU-CG GA-AGA-GCC U--------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------uua cgauuuagca uuuugcau-a gucGAAc-gg a-a(u-ggaa a)g-uccgGC 781 |c(gua)gcA GG(UGAUAGC )CCUGU-Aga c-gaaaugca gag-ugugga acuaggcgua 841 a--------- ---------- -----GAGAA GUAGGGCGGG A(CACGUG-A AA)UCCUGUC 901 UGAAGAU-GG G-GG(GACCA U)CC-UCC-A AGGCUAA--- -AUACUCGUG AUCGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GG-A-AA GGCGAAAA-G AACCCC(GG- AA-)--GGA- 1021 -GUGAAA-UA GAUCCUGAAA CCGU-AUGCA UACAA-A-CA GUCGGAGCCU --C------- 1081 --------(- ---uuuau-) ---------- -----G-GGG UGACGGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAC-AUUC- AGUGGC-GAG CUUAACC--( -GAAUA)--G 1201 G-GAAGGCGU CA-(gaana) GCAgnUCC(G AA-UA)GGGC GU-------- ---------- 1261 ---------- ------c-CA G-UCGCUGGG UGUA-GACCC GAAAC-CAG- AUGA-UCUAC 1321 CCAUGGC|CA GGUUGAAGGC ACGG(UAAC) AC-GUCGUGG AGGACCGAAC C-CACUAGU( 1381 -GUUGAAAA) ACUAG|GGG- AUGAG-CUGU GGAUAGGGGU (-GAAAG)GC UAAACAAAUC 1441 UGGAAAUAGC UGGUUCUCUC CGAAAACUAU (-UUAG)GUA GUGC|-CUCA AGua----U| 1501 -UAC|UGCAG G|GGGUAG|A GC-ACUGU-U AUGGCUA-GG |-GGGUC(au ggc)GACUUA 1561 CCAAACCAUG -GCAAACUCC GAA-UA-|CC U-G-C-A--A GUAC----A| GCU-UGGGAG 1621 ACAGAC-GAC C-GGGU(GCU AAC)GUCCGG -ACUC-AAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCG- AAU-U-AUCG -C-UAA-GUG ------GGAA ACGAAGUG-G 1741 GAAGGCAUA- GACAGUCAGG AGGUUGGC(U UAGAAGCA)G CCAC-CCU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG AU-----CGA GU-CGU-CC- -UGC|GCGGA AGAU-GUAA- 1861 CGGGGCU-AA GCGAU-A|A| ACCGAAGCU| GCGG|gugug cacu---(uu u--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- agu-caggcg GG-UAGGAGA G|-----CGU 2221 U-CUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCUG-C 2341 AAAGGUG-G- C-UU(-GUAA -)AGG--CUG CUGG|AGGUA U-CAGAAGUG CGAAUGC-UG 2401 AC|AUG-AGU A--GCGAUAA AGGGGG(UGA AAAG)CCCCC U|CGCC-GUA AGUCCAAGGU 2461 UUCCUG-CGC AACG-(UUCA U)CG|G-CGC AGGGUGAGU| CGG|C-CCCU AAGGCGAGGC 2521 A(GAGA)-u- GCGU-AGCUG AUGG-GAAGC UGG-(UU-AA UAUU)C-CAG C|AC|cg-u- 2581 cg-uac-agu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga u------ggg g--gga-cgg aucgcggaa- gguc-a-|uc a-ggg(ug-- 2761 uuggac-gu- --)cc-cugu -|ugcu---- ---------- ---gcauuga agau------ 2821 ---ggcg-cu uagg(ca-aa -u-)cc|g-- ggcgcgaga- ---------- -aucaagggu 2881 gug--gca|c ga-|------ ------gcga g(-caagu-) cucgc----- ------gaag 2941 --ugauu-g- gaag--ug-| guuccaagaa a-agccuc-u aagcuuca-- ------gc-u 3001 -guacg--a- g|A|CCGUAC CGCAAACC(G ACACA)GG|U GGGACGGGA- U-(GAAUA)U 3061 UCCAAGGCGC ||UUGAGAGA ACUCAGGAG- ---------- ----AAGGAA CUCGGCAAAU 3121 UGAUACCGUA AC(-UUCG)G GAGAAGGUAU |ACCCUggua -guguga--- -------agc 3181 c(-ugcg-)c gcu------- ---gagcau- gaagggg-U| C(GCA)GAGA AUCGGUG-GC 3241 UG|CGACU-- ---GU(UUAU UAAAA)ACAC AGCACUCUG| CAAAGAC(GA AA------)G 3301 UCGACGU-AU AGGGUGUGA- CGCCUGCCCG GU|GCCG-GA A-GGUUAAGU GAUGGG---- 3361 GU-------- (G-CAA)--- --------GC ------UCUU GAUCGAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-UGGCCAC ACUGUCUCCU CCUGAGACUC 3541 A|GCGAAGUU |GAAGUGU-U UG(UGAUGAU G)CAAUCUAC CCGCGGC-UA GACGGAAAGA 3601 CCCCAUGA|A CCU-UUACUG U|AGCUUUGC AUU|GGACUG UGAACCGGCC UGUGUAGGAU 3661 AGGUGGGAGG CGCAGAAC-- UCGAGUC(GC CA)GAUUCGA GGGAGCCAUC -C-UUGAAAU 3721 ACCACC|CUG G-UUUGUUUG CGG-UUCUAA -CCUUGG--- -UCCG(--UU -AUC)-CGGA 3781 UCGGG-GACA GUGCAUGGUA GG-CAGUUUG ACUG(GGG)C GGUC|UCCUC C(CAA-AGCG 3841 UAAC)GGAGG A|G|U|UCGA AGGUACGC|U AGGUACGG(U CGGAAA)UCG UGCUGA-UA| 3901 GU(G|CAAUG )GCAUAAGCG UGCUUGACUG UGAGAC(UGA CAG)UGCGAA CAGGUGC(GA 3961 A-)-C-GGGA |CAUAGUGAU CCGGUGGUUC UG(-AUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAA-GGUA CUC|UGGG|- AUAACAG|GC UGA--UACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC UC|AUCC|U- GGGCU(GUAG 4141 C---C)-GGU CC-AAGGGU| AUG-C(UGUU C)GC-CAUUU AAAGAGGUAC G-UGAGCUGG 4201 GUUUA-AAAC |GUC(GUGA) AGACAGUU-U GGU-CCCUAU -CU|GCCGUG G-G|CG-UUG 4261 GAUACUU|GA A|CAGGAGCC UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG UACCUCUGGU GUACCGGU|U GUCAU(GC-C A-)AUGGCA- UUGCCGGGUA 4381 GCU-AAGUAC GGAAGAGAUA ACCGCU(GAA GGCAUCUA)A GCGG-AAACU CGUCUG|AAG 4441 AUUAGGUAUC C|C-|GGGA- -(cuaga-)- -UCCCCCUG- AAGG|-GU|C GUUC-(GAGA 4501 CC-A)GGACG -UUGAUAG|G UCGG|GUGUG -GAAGCGCA- -(GUAA-)-- UGCGU|UA-A 4561 GCUA|A|CCG AUACUAAUU- GCCCGUGAG| GCUUGA-UCC U-------|a uaacucucaa 4621 gucuuaauua uuaccgcugg acaguaacgc cagcgccguu cauaccaaca caacauacac 4681 agcaacgggu cgcugccagu cccaaccgac ugccaggcga cgcugugcuu cuuccagauu 4741 caagccguu~ ~~~|||||| // LOCUS T.ferrooxi 4759 bp RNA RNA 11-JAN-191 DEFINITION Thiobacillus ferrooxidans. ACCESSION No information KEYWORDS No information. SOURCE Thiobacillus ferrooxidans. ORGANISM Thiobacillus ferrooxidans. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U18089 LOCUS TFU18089 4415 bp DNA BCT 28-DEC-1994 DEFINITION Thiobacillus ferrooxidans 16S rRNA gene, partial sequence, 23S and 5S rRNA genes, complete sequence, and Ile-tRNA and Ala-tRNA sequences. ACCESSION U18089 KEYWORDS . SOURCE Thiobacillus ferrooxidans. ORGANISM Thiobacillus ferrooxidans Eubacteria; Proteobacteria; gamma subdivision. REFERENCE 1 (bases 1 to 4415) AUTHORS Flores-Rozas,H., Sanchez,H., Alvarado-Urbina,G. and Venegas,A. TITLE Sequences of the 23S and 5S rRNA genes of a Thiobacillus ferrooxidans rRNA operon JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 4415) AUTHORS Flores-Rozas,H.A. TITLE Direct Submission JOURNAL Submitted (03-DEC-1994) Hernan A. Flores-Rozas, Molecular Biology, Memorial Sloan-Kettering Cancer Center, New York, NY 10021, USA STANDARD full automatic COMMENT NCBI gi: 604373 FEATURES Location/Qualifiers source 1..4415 /clone="ptTF92" /strain="A4" /organism="Thiobacillus ferrooxidans" rRNA <1..96 /note="rRNA16S" /product="16S ribosomal RNA" misc_feature 97..141 /note="intergenic sequence between 16S rRNA gene and tRNA1" tRNA 142..218 /note="tRNA1" /product="Ile-tRNA" tRNA 221..296 /note="tRNA2" /product="Ala-tRNA" misc_feature 297..532 /note="intergenic sequence between tRNA2 and 23S rRNA gene" rRNA 533..3398 /note="rRNA23S" /product="23S ribosomal RNA" misc_feature 3399..3482 /note="intergenic sequence between 23S and 5S rRNA genes" rRNA 3483..3600 /note="rRNA5S" /product="5S ribosomal RNA" misc_feature 3601..3612 /note="intergenic sequence between 5S rRNA gene and transcription terminator" terminator 3613..3653 /note="putative rho independent transcription terminator" BASE COUNT 1088 a 1062 c 1361 g 904 t ORIGIN BASE COUNT 729 a 650 c 912 g 575 t 1893 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UCAAGUGAA- --UAAGGGCA UACGGUGGAU 121 G|CCUUGG|C AGAGAC|AG| GC-GAUGAAG GA|CGUG(GA UA-CC-)U|- GCG-AAAAGC 181 CUCGGG|-GA GCU(G-GUAA GCA-)AGCUU UG-AUC-CGG GGAUA|UCCG AAUGGG(GCA 241 A)CCC|agcc aga-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----guga)- ucugguu-AU UG-CACACU( 481 GA-AUACA-- ua)GGU-GUG -U-A--AAG- C-caAC|GC- GGUGAACU|G A(AACA)UCU 541 CAGUA-GCUG CAGGAAAAGA AAUC(-AACC --)GAGAU|U CC-CGUAGUA GC(GGCGA)G 601 CGA-ACC-GG GA-GCA-GCC uuca------ ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------uga ug---uagcg uaagacuu-a ggaGAAc-ga c-c(u-ggga a)g-guuggc 781 |c(gua)guG G-(UGAUAGC )CCCGU-AUC --gaaaagac uuu-cgugga acuaggcaug 841 a--------- ---------- -----GCAAA GUAGGGCGGG A(CACGUG-G AA)UCCUGUC 901 UGAAGAU-GG G-GG(GACCA U)CC-UCC-A AGGCUAA--- -AUACUCGUC UCUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)aGGCA-AA GGCGAAAA-G AACCGC(GGA GA-)G-GCA- 1021 -GUGAAA-UA GAUCCUGAAA CCGU-AUGCC UACAA-G-CA GUGGGAGCCC --G------- 1081 --------(- --uuuu-a-) ---------- -----C-GGG UGACUGCGUA CCU(UUU-GU 1141 AU|C)AUGG| -GUCAGCGAC UUAC-UUUUC UGUGGC-gAG CUUAACC--( gAAGUA)--G 1201 GuGAAGCCGU AGG(GAAA-) CCGAGUCU(G AA-UA)GGGC AC-------- ---------- 1261 ---------- ------a--u G-UCGCAGGG AGUA-GACCC -AAAC-C-G- ACGA-UCUAU 1321 CCAUGGU|CA G-AUGAAGGU GGG-(UAAA) AC-CUACUGG AGGUCCGAAC CcCAcgccc( 1381 cGUUGAAAA) gguc-|GGG- AU-AA-CUGU G-AUAGGAGU (-GAAAG)GC UAAACAAGUC 1441 C-GAGAUAGC UGGUUCUCCC CGAAAGCUAU (-UGAG)GUA G-GC|CGUCG CGua----U| 1501 -uac|CUGCC G|GGGUAG|A GC-ACUGU-U ACGGCUA--G |-GGGCU(gu cac)GGCUUA 1561 GGAACCCGUU -GCAAACUCC GAA-UAc|CG G-C-A-G--- uag----AG| -CG-CGGCAG 1621 ACAGUCUCGG C-GGGU(GCU AAG)CUCCGU -CGUC-AAGA GGG(AUGAAA AC)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCC- AAA-U-AUGG -C-UCA-GU- ------GGAA ACGAUGUG-G 1741 -AAGGCCCA- GACAGCUAGG AGGUUGGC(U UAGAAGCA)G CCAU-CCU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUA GU-----CGA GU-CGG-CC- -CGC|GCGGA AGAU-UUAA- 1861 CGGGGCUCAA GCCAU-A|U| ACCGAAGCU| GCGG|gugug ucc----(uu ag-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -ggacacgc- GG-UAGGGGA G|-----CGU 2221 U-CGG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCGA-U 2341 -AAGGUG-U- G-UU(-GUGA -)GGC--AUG CUGG|AGGUA U-CCGAAGUG CGAAUG--UG 2401 AC|AUG-AGU A--GCGAUAA AGGGUG(UGA AAAC)CACCC U|CGCC-GUA AGCCCAAGGU 2461 U-CCUG-CGC A-AG-(UCAA U)CU|G-CGC AGGGUGAGU| CGG|C-CCCU AAGGCGAGGC 2521 C(GAGA)-G- GCGU-AGCUG AUGG-GAAAU CGG-(UU-AA UAUU)C-CGA U|AC|ug-u- 2581 ua-caa-gau ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga u------gga g--uga-cgg agaaaggua- gcuc-a-|gc c-ggg(ug-- 2761 uuggau-gu- --)cu-gggu -|uuag---- ---------- ---gcgu-ua ggga------ 2821 ---gucu-cu cagg(ca-aa -u-)cg|g-- gaaggcca-- ---------- -uuc-gaggc 2881 gug-auga|c ga-|------ ------uccu c(-uacg--) gagga----- ------gaag 2941 --ugagu--g aacu-acg-| cuuccaggaa a-agcuuc-u aagcucua-- ------gu-c 3001 -uugug--au g|A|CCGUAC CCCAAACC(G ACACA)GG|U GG-GCAGGA- A-(GAAUA)U 3061 UCCAAGGCGC ||UUGAGAGA CCUCGGGUG- ---------- ----AAGGAA CUCGGCAAAU 3121 UGACACCGUA AC(-UUCG)G AAGAAGGUGU |GCCCUgaua -gguug---- -----uacuc 3181 c(-cuugc)g gag------- ---aaggcc- gaagggg-U| C(GCA)GAGA U-CGGUG-GC 3241 UG|CAACU-- ---GU(UUAA CAAAA)ACAC AGG-CUCUG| CAAAGAC(GA AA------)G 3301 UCGACGU-AU AGGGUCUGA- CGCCUGCCCG GU|GCCG-GA A-GGUUAAGU GAGGGG---- 3361 GU-------- (G-CAA)--- --------GC ------UCUU GAUCGAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAU GA-UGGCCAC ACUGUCUCCA CCCGAGACUC 3541 A|GCGAAGUU |GAAGUCG-C UG(UGAAGAU A)CAGCGUUC CCGUGGC-AA GACGGAAAGA 3601 CCCCGUGC|A CCU-UUACUA C|AACUUAGC AUG|GGACCU UGAGAUGAUU UGUGUAGGAU 3661 AGGUGGGAGG CUGUGAAA-- CCGGGAC(GC UA)GUUCUGG UGGAGCCAGU CC-UUGAAAU 3721 ACCACC|CUG G-UGAUCUUG GGG-UUCUAA -CCUCGG--- -UCCG(--ug -auc)-CGGA 3781 UCAGG-GACA GUGUUUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|UCCUC C(CAA-AGAG 3841 UAAC)GGAGG A|G|C|ACGA AGGUACCC|U CAGCGCGG(U CGGAAA)UCG CGCAGU-GA| 3901 GU(G|CAAAG )GCACAAGGG UGCUUGACUG CGAGAC(AGA CAA)GUCGAG CAGGUGC(GA 3961 AA)GC-AGGU |CUUAGUGAU CCGGUGGUUC UG(UAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CGC|CGGG|G AUAACAG|GC UGA--UUCCC CCCAAGA(G- UUC-ACA)UC 4081 GACGGGG-GA GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GUAG 4141 C---C)uGGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGCGGUAC G-CGACCUGG 4201 GUUCA-GAAC |GU-(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCAUG G-G|CG-UUG 4261 GAGAUUU|GA -|AGGAAGC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG UACU-CUGGU GUUCCGGU|U GUUCU(GC-C A-)AGGGCA- UUGCCGGGUA 4381 GCU-AUGUAC GGUCGGGAUA ACCGCU(GAA AGCAUCUA)A GCGGAAG-CC A-UCCU|AAG 4441 AUGAGAUCUC C|C-|-GGGC -(-auaa-)- GCCCC-CUG- AAGG|-GA|C GUGG-(AAGA 4501 CU-A)CCACG -UUGAU-G|G CUCC|-UGUG -GAAGCGCA- -(GCAA-)-- UGCGU|GC-A 4561 GCUA|A|GGA GUACUAAUC- GGCCGUGCG| GCUUGA-CCA U-------|- ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS X.fragaria 4759 bp RNA RNA 30-MAR-1997 DEFINITION Xanthomonas fragariae.; . ACCESSION U60338 KEYWORDS . SOURCE Xanthomonas fragariae. ORGANISM Xanthomonas fragariae. REFERENCE 1 (bases 1 to 791) AUTHORS Buchholz-Cleven,B.E.E., Rattunde,B. and Straub,K.L. TITLE Fe(II)-oxidizing bacteria using DGGE and whole-cell hybridization Screening for genetic diversity of isolates of anaerobic JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 791) AUTHORS Buchholz-Cleven,B.E.E., Rattunde,B. and Straub,K.L. TITLE Direct Submission JOURNAL Submitted (11-JUN-1996) Molecular Ecology, Max-Planck-Institute, Celsiusstr. 1, Bremen 28359, Germany STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U60338 BASE COUNT 221 a 183 c 236 g 149 t 3970 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ 901 ~~~~~~~~UG G-GG(GACCA C)CC-UCC-A AGCCUAA--- -GUACUCCUC UACGACCGAU 961 AGUG-AAC-A AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCG(GAC AA-)GGGGA- 1021 -GUGAAA-CA GAUCCUGAAA UCGG-AAGCC UACAA-G-CA GUCGGAGCCG --C------- 1081 --------(- ---caag--) ---------- ---cGC-G-G UGACGGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUCA-UGUG- UCGAGC-AAG CUUAAGCC-( -G-UUA)-GG 1201 U-GUAGGCGC AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC Gc-------- ---------- 1261 ---------- ------U-AA G-UUCGACGU AUGAcGACCC GAAAC-CAG- GUGA-UCUAU 1321 CCAUGAG|CA GGAUGAAGGU UGGG(UAAC) AC-CAACUGG AGGUCCGAAC C-GGUGACU( 1381 -GUUGAAAA) AGCCU|CGG- AUGAC-UUGU GGAUAGGGGU (-GAAAG)GC CAAUCAAACC 1441 UGGACAUAGC UGGUUCUCCG CGAAAUCUAU (-UUAG)GUA GAGC|-gucc gacga---A- 1501 -UUC|CUUGG G|GGGUAG|A GC-ACUGG-A UGGUUGC-GG |-GCUGC(gc ga-)GCGGUA 1561 CCAAUACUAA -CCAAACUCC GAA-UA-|CC C-A-A-G--A GAAC----U| AUC-GGGCAG 1621 ACACAC--GG C-GGGU(GCU AAC)GUCCGU -CGUG-AAAA GGG(-AAACA A-)CCCUAAC 1681 CAUCAUCUAA G-GC|CCCC- AAGUC-ACGG -C-UAA-GUG ------GGAA ACGAUGUG-G 1741 GAUUGCUUU- GACAAUCAGG AGGUUGGC(U UAGAAGCA)G CCAU-CCU|U (UAA)A|GAA 1801 AGC(GUAACA )GC|UCACUG AU-----CAA GC-GAU-CC- -UGC|GCGGA AAAU-GUWA- 1861 CGGGGCUCAA GCCGU-G|C| GCCGAAGAU| AUGG|guuug cag----(uu ua-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -cugcaagc- GG-UAGCGGA R|-----CGU 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS T.cuprin.1 4759 bp RNA RNA 11-JAN-191 DEFINITION Thiomonas cuprina.. ACCESSION No information KEYWORDS No information. SOURCE Thiomonas cuprina. ORGANISM Thiomonas cuprina. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X75567 ID TCRNA23S standard; DNA; PRO; 2858 BP. XX AC X75567; XX DT 30-NOV-1994 (Rel. 41, Created) DT 30-NOV-1994 (Rel. 41, Last updated, Version 2) XX DE T.cuprinus gene for 23S ribosomal RNA XX KW 23S ribosomal RNA. XX OS Thiobacillus cuprinus OC Prokaryota; Bacteria; Gracilicutes; Scotobacteria; OC Aerobic chemolithotrophic bacteria; Colorless sulfur bacteria. XX RN [1] RA Moreira D., Amils R., Marin I.; RT "Complete primary structure of the 23S rRNA gene from Thiobacilus RT cuprinus and its similarity with that of Burkholderia cepaci"; RL Syst. Appl. Microbiol. 0:0-0(0). XX RN [2] RP 1-2858 RA Moreira D.; RT ; RL Submitted (02-NOV-1993) to the EMBL/GenBank/DDBJ databases. RL D. Moreira, Centro de Biol. Molecular 'Severo Ochoa', Facultad de RL Biologie, Universidad Autonoma de Madrid, 28049 Madrid, SPAIN XX FH Key Location/Qualifiers FH FT source 1..2858 FT /organism="Thiobacillus cuprinus" FT /strain="DSM5495" FT rRNA 1..2858 FT /gene="23S-RRNA" FT /product="23S ribosomal RNA" XX SQ Sequence 2858 BP; 761 A; 622 C; 870 G; 605 T; 0 other; BASE COUNT 761 a 622 c 870 g 605 t 1901 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GA UCAAGCGAC- --UAAGUGCA UACGGUGGAU 121 G|CCUUGG|C GAGUAC|AG| GC-GAC-AAG GA|CGUG(GA AG-CC-)U|- GCG-UUAAGC 181 UGCGGG|-GA GCU(GUGCAA UCA-)AGCUU UG-AUC-CGU AAAUG|UCCG AAUGGG(GAA 241 A)CCC|accc ----(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----guaa)- ----ggu-AU CU---UGCU( 481 GA-AUACA-- UA)GGC-A-- aa-g--aAG- G-cgAC|CG- AGUGAACU|G A(AACA)UCU 541 AAGUA-ACUC GAGGAAAAGA AAUC(cAACC --)GAGAU|U CC-GAAAGUA GU(GGCGA)G 601 CGA-AAU-CG -A-cCA-GCC ugg------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 --------ua cguuuuagcg uagauauc-a gggGAAu-cu c-u(u-ggaa a)a-gagagc 781 |c(aca)guG GG(UGAUAGC )CCCGU-ACC U-aaaaauau uug-cgugga acuaggcgua 841 c--------- ---------- -----GACAA GUAGGGCGGG A(CACGUG-U AA)UCCUGUC 901 UGAACAU-GG G-GG(GACCA U)CC-UCC-A AGGCUAA--- -AUACUCGUA GUCGACC-AU 961 AGUG-AAC-A AGUACC(GUG A)-GGGAAAA GGUGAAAA-G AACCCC(GG- GA-)GGGGA- 1021 -GUGAAA-UA GAUCCUGAAA CCGU-AUGCA UACAAAA-AA GUCGGAGCCU --C------- 1081 --------(- ---gcaa--) ---------- -----G-GGG UGACGGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAC-AUUC- AGUGGC-AAG CUUAACC--( -GAAUA)--G 1201 G-GAAGGCGU AGG(GAAA-) CCGAGUCC(G AA-CA)GGGC GU-------- ---------- 1261 ---------- ------u-ca G-UCGCUGGG UGUA-GACCC GAAAC-CGG- AUGA-UCUAU 1321 CCAUGGC|CA GGAUGAAGGC UGGG(UAAC) AC-CAGCUGG AGGUCCGGAU C-CACUAGU( 1381 -GUUGCAAA) AUUAG|CGG- AUGAG-CUGU GGAUAGGGGU (-GAAAG)GC UAAACAAAUC 1441 CGGAAAUAGC UGGUUCUCCU CGAAAACUAU (-UUAG)GUA GUGC|-CUCG UGUa----U| 1501 -CAC|CUUCG G|GGGUAG|A GC-ACUGU-U UUGGCUA-GG |-GGGUC(au ggc)GAGUUA 1561 CCAAACCAAG -GCAAACUCC GAA-UA-|CC G-A-A-G--A GUGU---CA| GCA-CGGGAG 1621 ACAGAC--AC C-GGGU(CGU AAC)GCUCGG -ACAC-AAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCU- AAA-U-AUAG -C-UAA-GUG ------GGAA ACGAAGUG-G 1741 GAAGGCUUU- GACAGUCAGG AAGUUGGC(U UAGAAGCA)G CCAU-CC-|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG AU-----CGA GU-CGU-CC- -UGC|GCGGA AGAU-GUAA- 1861 CGGGGCU-AA GCUAU-A|U| ACCGAAGCU| GCGG|augug c------(gu aa-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ------cgu- GG-UAGAGGA G|cguucCGU 2221 U-CCG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCUG-C 2341 GAGGGUG-U- U-CU(-GUAA -)GGA--AUG CUGG|AGGUA U-CGGAAGUU CGAAUCG-UG 2401 AC|AUG-AGU A--GCGUUAA AGGGGG(UGA AAGC)UCCCC U|CGCC-GUA AGUCCAAGGU 2461 UUCCUA-CGC AACG-(UUCA U)CG|G-CGU AGGGU-AGU| CGG|C-CCCU AAGGCGAGGC 2521 A(GAAA)-U- GCGU-AGCUG AUGG-GAAAC AGG-(UU-AA UAUU)CACUG U|AC|ca-ca 2581 ug-ucu-agu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga u------gug g--gga-cgg agaaaguua- gguu-a-|uc c-agg(ug-- 2761 uuggau-gu- --)cc-uggu -|ucaa---- ---------- ---gcag-gu aggc------ 2821 -gugccc-cu uagg(ca-aa -u-)cc|g-- gggggcua-- ---------- agcu-gagau 2881 gug-auga|c g--|------ ------agcg g(ggcuug-) ccgcu----- ------gaag 2941 --uaacu-ga uacu-cug-| cuuccaagaa a-agccac-u aagcuuc--- ------ac-u 3001 -agac---gu g|A|CCGUAC CGCAAACC(G ACACU)GG|U GC-GCGAGA- U-(GAGUA)U 3061 UCUCAGGCGC ||UUGAGAGA ACUCGGGAG- ---------- ----AAGGAA CUCGGCAAAU 3121 UUGUACCGUA AC(-UUCG)G GAUAAGGUAC |GCCCCuagu -auguga--- -------cgc 3181 c(-guaca)g gcu------- ---gagcag- aaugggg-C| C(GAC)GUGA AAAGGUG-GC 3241 UG|CGACU-- ---GU(UUAU UAAAA)ACAC AGCACUCUG| CAAACAC(GA AA------)G 3301 UGGACGU-AU AGGGUGUGA- CGCCUGCCCG GU|GCCG-GA A-GGUUAAGU GAUGGG---- 3361 GU-------- (G-CAA)--- --------GC ------UCUU GAUCGAAGC- |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-UGGCCAC ACUGUCUCCU CCCGAGACUC 3541 A|GCGAAGUU |GAAAUGU-U UG(UGAUGAU G)CAAUCUCC CCGCGGA-AA GACGGAAAGA 3601 CCCCAUGA|A CCU-UUACUG U|AGCUUUGC AUU|GGACUU UGAACAGAUC UGUGUAGGAU 3661 AGGUGGGAGG CUUUGAAG-- CCGGGAU(GC UA)GUUCCGG UGGAGCCAAC -C-UUGAAAU 3721 ACCACC|CUG G-UGUGUUUG AGG-UUCUAA -CCUUGG--- -UCCU(--ug aauc)-AGGA 3781 CUGGG-GACA GUGCAUGGUG GG-CAGUUUG ACUG(GGG)C GGUC|UCCUC C(UAA-AGCG 3841 UAAC)GGAGG A|G|U|UCGA AGGUACGC|U AGGUACGG(U CGGAAA)UCG UGCUGA-UA| 3901 GU(G|C-AU- )GCAUA-GCG UGCUU-ACUG CGAGAC(UGA CAC)GUGACG AAU--GC(GA 3961 AA)-C--GGA |CAUAGUGAU CCGa-gaa-c aG(UAU-GA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|UGGG|- AUAACAG|GC UGAagUACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GUuUUGGCAC CUCGAUGUC| GGCU|C|AUC UC|AUCC|UG GGGCU(GUAG 4141 C---C)-GGU CCCAAGGGU| AUC-C(UGUU C)GC-CAUUU AAAGAGGUAC G-UGAGCUGG 4201 GUUUA-AAAC |GUC(GUGA) -GACAGUU-U UGU-CCCUAU -CU|UCCGUG G-G|CG-CUG 4261 GAAGCUU|GA -|GAGGGGC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG CACCCCUGGU GUACCGGU|U GUCAC(GC-C A-)GUG-CA- UCGCCGGGUA 4381 GCU-AUGUGC GGAAGAGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAACU CGCCUC|AAG 4441 AUUAGGCUUC C|CU|GGAGA -(cuuga-)- UCUCC-CUAA AAGG|-GU|C GUUG-(AAGA 4501 CG-A)CAACG -UUGAUAG|G CU-G|GUGUG -GAAGCGCA- -(GUAA-)-- UGCGU|UG-A 4561 GCUA|A|C-A GUACUAAUU- GCCC-U-A-| GCUUGA-UC- --------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS T.cuprin.2 4759 bp RNA RNA 03-JUL-1997 DEFINITION Thiomonas cuprina; 23S ribosomal RNA; 23S rRNA gene. ACCESSION X87292 KEYWORDS 23S ribosomal RNA; 23S rRNA gene. SOURCE Thiomonas cuprina. ORGANISM Thiomonas cuprina. REFERENCE 1 (bases 1 to 2877) AUTHORS Ludwig,W., Rossello-Mora,R., Aznar,R., Klugbauer,S., Spring,S ., Reetz,K., Beimfohr,C., Brockmann,E., Kirchhof,G., Dorn,S., Bachleitner,M., Klugbauer,N., Springer,N., Lane,D., Nietupsky ,R., Weizenegger,M. and Schleifer,K.H. TITLE Comparative sequence analysis of 23S rRNA from proteobacteria JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2877) AUTHORS Ludwig,W. TITLE Direct Submission JOURNAL Submitted (18-MAY-1995) W. Ludwig, Lehrstuhl fuer Mikrobiologie, Technische Universitaet Muenchen, Muenchen, FRG STANDARD No information REFERENCE 3 (bases 1 to 2877) AUTHORS Ludwig,W., Rossello-Mora,R., Aznar,R., Klugbauer,S., Spring,S., Reetz,K., Beimfohr,C., Brockmann,E., Kirchhof,G. , Dorn,S., Bachleitner,M., Klugbauer,N., Springer,N., Lane, D., Nietupsky,R., Weizenegger,M. and Schleifer,K.H. TITLE Comparative sequence analysis of 23S rRNA from proteobacteria JOURNAL Syst. Appl. Microbiol. 18, 164-188 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X87292 BASE COUNT 760 a 626 c 887 g 604 t 1882 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UCAAGCGAC- --UAAGUGCA UACGGUGGAU 121 G|CCUUGG|C GACUAC|AG| GC-GACGAAG GA|CGUG(GA AG-CC-)U|- GCG-UUAAGC 181 UGCGGG|-GA GCU(G-GCAA UCA-)AGCUU UG-AUC-CGU AGAUG|UCCG AAUGGG(GAA 241 A)CCC|accc ----(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----gcaa)- ---gggu-AU UC-UUUGCU( 481 GA-AUACA-- UA)GGC-AAA -g-a--agg- c-gaAC|CG- AGUGAACU|G A(AACA)UCU 541 AAGUA-ACUC GAGGAAAAGA AAUC(-AACC --)GAGAU|U CC-GAAAGUA GU(GGCGA)G 601 CGA-AAU-CG Ga-CCA-GCC ug-------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 --------ua cguuuuagcg uagauauc-a gggGAAu-cu c-u(u-ggaa a)a-gagagc 781 |c(aca)guG GG(UGAUAGC )CCCGU-ACC U-aaaaauau uug-cgugga acuaggcgua 841 c--------- ---------- -----GACAA GUAGGGCGGG A(CACGUG-U AA)UCCUGUC 901 UGAACAU-GG G-GG(GACCA U)CC-UCC-A AGGCUAA--- -AUACUCGUA GUCGACCGAU 961 AGUG-AAC-A AGUACC(GUG A)-GGGA-AA GGUGAAAA-G AACCCC(GG- GA-)GGGGA- 1021 -GUGAAA-UA GAUCCUGAAA CCGU-AUGCA UACAA-A-AA GUCGGAGCCC ---------- 1081 --------(- ---gcaa--) ---------- -------GGG UGACGGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAC-AUUC- AGUGGC-AAG CUUAACC--( -GAAUA)--G 1201 G-GAAGGCGU AGG(GAAA-) CCGAGUCC(G AA-CA)GGGC GU-------- ---------- 1261 ---------- ------u-ca G-UCGCUGGG UGUA-GACCC GAAAC-CGG- AUGA-UCUAU 1321 CCAUGGC|CA GGAUGAAGGC UGGG(UAAC) AC-CAGCUGG AGGUCCGAAC C-GACUAGU( 1381 -GUUGCAAA) AUUAG|CGG- AUGAG-CUGU GGAUAGGGGU (-GAAAG)GC UAAACAAAUC 1441 CGGAAAUAGC UGGUUCUCCU CGAAAACUAU (-UUAG)GUA GUGC|-CUCG UGUa----U| 1501 -CAC|CUUCG G|GGGUAG|A GC-ACUGU-U UUGGCUA-GG |-GGGUC(au ggc)GACUUA 1561 CCAAACCAAG -GCAAACUCC GAA-UA-|CC G-A-A-G--A GUGU---CA| GCA-CGGGAG 1621 ACAGUG-CAC C-GGGU(GCU AAC)GUCCGG -ACAC-AAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCU- AAA-U-AUAG -C-UAA-GUG ------GGAA ACGAAGUG-G 1741 GAAGGCUUU- GACAGUCAGG AAGUUGGC(U UAGAAGCA)G CCAU-CCU|U (UAA)A|GAA 1801 AG(CGUAAUA )GC|UCACUG AU-----CGA GU-CGU-CC- -UGC|GCGGA AGAU-GUAA- 1861 CGGGGCU-AA GCUAU-A|U| ACCGAAGCU| GCGG|augug c------(gu aa-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ---gcacau- GG-UAGAGGA G|-----CGU 2221 U-CCG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCUG-C 2341 GAAGGUG-U- U-CU(-GUAA -)GGA--AUG CUGG|AGGUA U-CGGAAGUG CGAAUGC-UG 2401 AC|AUG-AGU A--GCGUUAA AGGGGG(UGA AAAG)CCCCC U|CGCC-GUA AGCGCAAGGU 2461 UUCCUA-CGC AACG-(UUCA U)CG|G-CGU AGGGUGAGU| CGG|C-CCCU AAGGCGAGGC 2521 A(GAAA)-U- GCGU-AGCUG AUGG-GAAAC AGG-(UU-AA UAUU)C-CUG U|AC|ca-c- 2581 ug-ucu-agu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga u------gug g--gga-cgg agaaaguua- gguu-a-|uc c-agg(ug-- 2761 uuggau-gu- --)cc-uggu -|ucaa---- ---------- ---gcag-gu aggc------ 2821 -gugccc-cu uagg(ca-aa -u-)cc|g-- gggggcua-- ---------- agcu-gagau 2881 gug-auga|c ga-|------ ------ggcg g(--cuug-) ccgcu----- ------gaag 2941 --uaacu-ga uacu-cug-| cuuccaagaa a-agccac-u aagcuuca-- ------gc-u 3001 -agac---gu g|A|CCGUAC CGCAAACC(G ACACU)GG|U GC-GCGAGA- U-(GAGUA)U 3061 UCUCAGGCGC ||UUGAGAGA ACUCGGGAG- ---------- ----AAGGAA CUCGGCAAAU 3121 UUGUACCGUA AC(-UUCG)G GAUAAGGUAC |GCCCCuagu -auguga--- -------cgc 3181 c(-guaca)g gcu------- ---gagcag- aaugggg-C| C(GCA)GUGA AAAGGUG-GC 3241 UG|CGACU-- ---GU(UUAU UAAAA)ACAC AGCACUCUG| CAAACAC(GA AA------)G 3301 UGGACGU-AU AGGGUGUGA- CGCCUGCCCG GU|GCCG-GA A-GGUUAAGU GAUGGG---- 3361 GU-------- (G-CAA)--- --------GC ------UCUU GAUCGAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-UGGCCAC ACUGUCUCCU CCCGAGACUC 3541 A|GCGAAGUU |GAAAUGU-U UG(UGAUGAU G)CAAUCUCC CCGCGGA-AA GACGGAAAGA 3601 CCCCAUGA|A CCU-UUACUG U|AGCUUUGC AUU|GGACUU UGAACACAUC UGUGUAGGAU 3661 AGGUGGGAGG CUUUGAAG-- CCGGGAU(GC UA)GUUCCGG UGGAGCCAAC -C-UUGAAAU 3721 ACCACC|CUG G-UGUGUUUG AGG-UUCUAA -CCUUGG--- -UCCU(--ug -auc)-AGGA 3781 CUGGG-GACA GUGCAUGGUG GG-CAGUUUG ACUG(GGG)C GGUC|UCCUC C(UAA-AGCG 3841 UAAC)GGAGG A|G|U|UCGA AGGUACGC|U AGGUACGG(U CGGAAA)UCG UGCUGA-UA| 3901 GU(G|CAAUG )GCAUAAGCG UGCUUAACUG CGAGAC(UGA CAA)GUCGAG CAGAUGC(GA 3961 AA)GC-AGGA |CAUAGUGAU CCGGUGGUUC UG(UAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|UGGG|G AUAACAG|GC UGA--UACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC UC|AUCC|UG GGGCU(GUAG 4141 C---C)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGAGGUAC G-UGAGCUGG 4201 GUUUA-AAAC |GUC(GUGA) -GACAGUU-U UGU-CCCUAU -CU|GCCGUG G-G|CG-CUG 4261 GAAGCUU|GA -|GAGGGGC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG CACCCCUGGU GUACCGGU|U GUCAC(GC-C A-)GUGGCA- UCGCCGGGUA 4381 GCU-AUGUGC GGAAGAGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAACU CGCCUC|AAG 4441 AUUAGGCUUC C|CU|GGAGA -(cuuga-)- UCUCC-CUA- AAGG|-GU|C GUUG-(AAGA 4501 CG-A)CAACG -UUGAUAG|G CUGG|GUGUG -GAAGCGCA- -(GUAA-)-- UGCGU|UG-A 4561 GCUA|A|cCA GUACUAAUU- GCCCGUGAG| GCUUGA-UCC U-------|a ua-------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS M.bispor.1 4759 bp RNA RNA 30-JUN-1997 DEFINITION Microbispora bispora.; . ACCESSION U83912 KEYWORDS . SOURCE Microbispora bispora. ORGANISM Microbispora bispora. REFERENCE 1 (bases 1 to 5386) AUTHORS Wang,Y., Zhang,Z. and Ramanan,N. TITLE The actinomycete Thermobispora bispora contains two distinct types of transcriptionally active 16S rRNA genes JOURNAL J. Bacteriol. 179, 3270-3276 (1997) STANDARD No information REFERENCE 2 (bases 1 to 5386) AUTHORS Wang,Y. TITLE Heterogeneity of rRNA genes in T. bispora JOURNAL Thesis (1997) Institute of Molecular and Cell Biology, National University of Singapore STANDARD No information REFERENCE 3 (bases 1 to 5386) AUTHORS Wang,Y. TITLE Direct Submission JOURNAL Submitted (07-JAN-1997) Institute of Molecular and Cell Biology, National University of Singapore, 10 Kent Ridge Crescent, Singapore 119260, Singapore STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U83912,U83911 BASE COUNT 635 a 734 c 1099 g 574 t 1717 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------AG UCAAGUUAC- --UAAGGGCA CACGGUGGAU 121 G|CCUUGG|C ACCAGG|AG| CC-GAUGAAG GA|CGUG(GG AG-CC-)U|- GCG-AUAAGC 181 CUCGGG|-GA GCC(G-GCUA CCA-)GGCGU UG-AUC-CGG GGAUU|UCCG AAUGGG(GGA 241 A)CCU|GGCC CGA-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --guugug)- UCGGGUC-GC CG-CCGUCU( 481 GA-ACGCA-- UA)GGA-CGG -UUG--GUG- G-GAAC|GC- GGGGAAGU|G A(AACA)UCU 541 CAGUA-CCCG CAGGAAGAGA AAGC(-AAUC --)GCGAU|U CC-CUGAGUA GU(GGUGA)G 601 CGA-AAG-GG GA-AGA-GGC UAAACCGGUG -GCGUGUUAA AGCC-(GGCA -)---GGGC- 661 UUGCGUUACC GGGGUUGUGG GACGCUCCUU -----UGCA- GUCUC(-UGC C-)GGGGCUG 721 C---gggcag ugagaaaucg gug-ggau-a gccGAAc-gc u-c(u-ggaa u)g-ggcggc 781 |c(gua)gaC CG(UGAGAGC )CGGGU-Agg c-gaaaucuu gcc-ga-cug ccu------- 841 ---------- ---gggggug uuccc---ga guaGCACGGG G(CCCGAG-G AA)UCCUGUG 901 CGAAUCU-GC C-AG(GACCA C)CU-GGU-A AGCCUAA--- -AUACUCCCU GGUGACCGAU 961 AGUG-GAC-G AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CGCCCC(GGU GA-)GGGGUU 1021 -GUGAAA-UA GUACCUGAAA CCGU-GUGCC UACAA-G-CC GUGGGAGCUU ggca-gcgcc 1081 c-------(- ---uuug--) ---gguguug ucg-UG-AUG UGACCGCGUG CCU(UUU-GA 1141 AG|A)AUGA| -GCCUGCGAG UUGA-CGUG- CGUGGC-GAG GUUAACCC-( --GUGU)-GG 1201 G-GGAGCCGU AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC GU-------- ---------- 1261 ---------- ------u-ga G-UCGCGUGC GUCAAGACCC GAAGC-CGG- GUGA-UCUAC 1321 CCGUGGG|CA GGGUGAAGCU CAGG(UAAG) AC-UGGGUGG AGGCCCGAAC C-CACCAGG( 1381 -GUUGCAAA) CCUGG|GGG- AUGAC-CUGC GGGUAGCGGU (-GAAAA)GC CAAUCGAACU 1441 CGGUGAUAGC UGGUUCUCCC CGAAAUGCAU (-UUAG)GUG CAGC|-GUCA CGUGG---U| 1501 -CCU|UGCC- G|AGGUAG|A GC-ACUGG-U UGGCCGA-UG |-GGCCC(Uc ac-)agGUUA 1561 CUGAGGUCAG -CCAAACUCC GAA-UG-|CC G-G-U-A--- AGUG--UGA| GCG-UGGCAG 1621 UGAGAC--CG C-GGGG(GAU AAG)CUUCGU -GGUC-GAGA GGG(-AAACA G-)CCCAGAU 1681 CACCGGCUAA G-GC|CCCG- AAGCG-UGUG -C-UGA-GUG ------GGAA AGGAUGUG-A 1741 AGCCGCUGU- GACAGCCAGG AGGUUGGC(U UAGAAGCA)G CCAU-CCU|C (UAA)G|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CUA GU-GGU-UU- -UGC|GCCGA CAAU-GUAG- 1861 CGGGGCUCAA GCACA-C|C| GCCGAAGCC| GUGG|cgucu uccg---(cg ugug------ 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- cgggggacg- GG-UAGGGGA G|-----CGU 2221 C-GUG-CG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CGGG-U 2341 GAAGCGG-C- G-GG(-GUGA -)CCC-AGCC GUGG|ACGCC G-UGCGAGUG AGAAUGC-AG 2401 GC|AUG-AGU A--GCGUU-U CAGAAG(UGA GAAA)CUUCU G|CGCC-GGA UGACCAAGGG 2461 UUCCUG-GGG CAGG-(UUGA U)CC|G-CCC AGGGUAAGU| CGG|G-ACCU AAGGCGAGGC 2521 C(GAUA)-G- GCGU-AGUCG AUGG-GCAAC GGG-(UU-GA UAUU)C-CCG U|AC|cc-g- 2581 cc-gug-gcg c--------- ---------- ---------- --------gu -----ucug- 2641 -----ccgc( uuc-g)gugg ---------- -------cag g--------- ---------- 2701 ---uaagcga u------ggg g--gga-cgc aggaaggua- gccc-au|cc c-agg(cg-- 2761 gugguu-gu- --)cc-uggg -|guaa---- ---------- ---gcau-gu aggg------ 2821 -ug-cgg-gg uagg(ca-aa -u-)cc|g-- ccccg-uguu a--------a gccc-gagau 2881 gcg-augc|c ga-|------ -------gcc g(-auug--) uggc------ ------gaag 2941 --ugggu-ga uccu-cua-| cugccgagaa a-agccuc-u a-gcga---- ------gc-g 3001 cuaugg--cg g|C|CCGUAC CCUAAACC(G ACUCU)GG|U GG-UCAGGU- A-(GAGAA)U 3061 ACCGAGGCGU ||UCGGGCGA ACCGCGGUU- ---------- ----AAGGAA CUAGGCAAAU 3121 UGCCCCCGUA AC(-UUCG)G GAGAAGGGGG |GCCUCUGCU -GGUGUA--- -------ggc 3181 a(-cgugc)u gccga----- ---agcugg- -uggggg-C| C(GCA)GAGA AUAGGCC-CA 3241 GG|CGACU-- ---GU(UUAC UAAAA)ACAC AGGUCCGUG| CGAAGUC(GU AA------)G 3301 ACGAAGU-AU ACGGACUGA- CGCCUGCCCG GU|GCCG-GA A-CGUUAAGG GGACGGGUUA 3361 GCGGC-CU-- (U-UCG)-GG GUU-----GC GA-AGCUCGG AACCUAAGCG |CCGGUAAAC 3421 |-GGC|GGUG GU(AACUAUA )ACCAUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GG-UCUGGGC ACUGUCUCAA CCGCGGACCC 3541 G|GCGAAAUU |GCACUAC-G AG(UAAAGAU G)CUCGUUAC GCGCAGC-AG GACGGAAAGA 3601 CCCCG-GG|A CCU-UCACUG C|AGCUUGGC AUU|GGCGUU UGGAAUGGCU UGUGUAGGAU 3661 AGGCGGGAGA CUGUGAAG-- CGGGCAC(GC CA)GUGUCCG UGGAGUCGCC -G-UUGAAAU 3721 ACCACU|CUG G-CUGUUUCG GAC-GUCUAA -CCCGGG--- -UCCC(--UU -AUC)-GGGA 3781 UCGGG-GACA GUGCCUGGUG GG-UAGUUUG ACUG(GGG)C GGUU|GCCUC C(UAA-AGGG 3841 UAAC)GGAGG C|G|C|CCAA AGGUCCCC|U CAGCCUGG(U UGGAAA)UCA GGCGUU-GA| 3901 GU(G|UAAGG )GCACAAGGG GGCUUAACUG UGAGAC(CGA CGG)GUCGAG CAGAUGC(GA 3961 AA)GC-AGGG |CCUAGUGAU CCGGCGGUGG CG(AGUGGA) AGC|GCCGUC GCUCAAC|GG 4021 CUAAAAGGUA CCC|CGGG|G AUAACAG|GC UGA--UCAUC CCCAAGA(G- UCC-AUA)UC 4081 GACGGGA-UG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GGAG 4141 U---A)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GCGA) -GACAGUU-C GGU-CCCUAU -CC|GCUGCG C-G|CG-UAG 4261 GAGACUU|GA -|GGGGGGC- UGU------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAACGG|ACG AACCUCUGGU GUGCCAGU|U GUGCC(GC-C A-)GGUGCA- CGGCUGGUUG 4381 GCU-ACGUUC GGUUGGGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAGCC CGCCCC|GAG 4441 AUGAGGUCUC C|CU|CCGG- -(GUUAA-)- -CCGG--GU- AAGG|-CU|C CCAG-(UAGA 4501 UG-A)CUGGG -UUGAUAG|G CCGG|UGGUG -GAAGCGCG- -(GUAA-)-- CGUGU|GG-A 4561 GCCG|A|CCG GUACUAAUA- AGCCGAGAG| GCUUGA-CUU CA~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS M.bispor.2 4759 bp RNA RNA 30-JUN-1997 DEFINITION Microbispora bispora.; . ACCESSION U83909 KEYWORDS . SOURCE Microbispora bispora. ORGANISM Microbispora bispora. REFERENCE 1 (bases 1 to 5153) AUTHORS Wang,Y., Zhang,Z. and Ramanan,N. TITLE types of transcriptionally active 16S rRNA genes The actinomycete Thermobispora bispora contains two distinct JOURNAL J. Bacteriol. 179, 3270-3276 (1997) STANDARD No information REFERENCE 2 (bases 1 to 5153) AUTHORS Wang,Y. TITLE Heterogeneity of rRNA genes in T. bispora JOURNAL Thesis (1997) Institute of Molecular and Cell Biology, National University of Singapore STANDARD No information REFERENCE 3 (bases 1 to 5153) AUTHORS Wang,Y. TITLE Direct Submission JOURNAL Submitted (07-JAN-1997) Institute of Molecular and Cell Biology, National University of Singapore, 10 Kent Ridge Crescent, Singapore 119260, Singapore STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U83909 BASE COUNT 633 a 732 c 1098 g 572 t 1724 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------AG UCAAGUUAC- --UAAGGGCA CACGGUGGAU 121 G|CCUUGG|C ACCAGG|AG| CC-GAUGAAG GA|CGUG(GG AG-CC-)U|- GCG-AUAAGC 181 CUCGGG|-GA GCC(G-GCUA CCA-)GGCGU UG-AUC-CGG GGAUU|UCCG AAUGGG(GGA 241 A)CCU|GGCC CGA-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --guugug)- UCGGGUC-GC CG-CCGUCU( 481 GA-ACGCA-- UA)GGA-CGG -UUG--GUG- G-GAAC|GC- GGGGAAGU|G A(AACA)UCU 541 CAGUA-CCCG CAGGAAGAGA AAGC(-AAUC --)GCGAU|U CC-CUGAGUA GU(GGUGA)G 601 CGA-AAG-GG GA-AGA-GGC UAAACCGGUG -GCGUGUUAA AGCC-(GGCA -)---GGGC- 661 UUGCGUUACC GGGGUUGUGG GACGCUCCUU -----UGCA- GUCUC(-UGC C-)GGGGCUG 721 C---gggcag ugagaaaucg gug-ggau-a gccGAAc-gc u-c(u-ggaa u)g-ggcggc 781 |c(gua)gaC CG(UGAGAGC )CGGGU-Agg c-gaaaucuu gcc-ga-cug ccu------- 841 ---------- ---gggggug uuccc---ga guaGCACGGG G(CCCGAG-G AA)UCCUGUG 901 CGAAUCU-GC C-AG(GACCA C)CU-GGU-A AGCCUAA--- -AUACUCCCU GGUGACCGAU 961 AGUG-GAC-G AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CGCCCC(GGU GA-)GGGGUU 1021 -GUGAAA-UA GUACCUGAAA CCGU-GUGCC UACAA-G-CC GUGGGAGCUU ggca-gcgcc 1081 c-------(- ---uuug--) ---gguguug ucg-UG-AUG UGACCGCGUG CCU(UUU-GA 1141 AG|A)AUGA| -GCCUGCGAG UUGA-CGUG- CGUGGC-GAG GUUAACCC-( --GUGU)-GG 1201 G-GGAGCCGU AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC GU-------- ---------- 1261 ---------- ------u-ga G-UCGCGUGC GUCAAGACCC GAAGC-CGG- GUGA-UCUAC 1321 CCGUGGG|CA GGGUGAAGCU CAGG(UAAG) AC-UGGGUGG AGGCCCGAAC C-CACCAGG( 1381 -GUUGCAAA) CCUGG|GGG- AUGAC-CUGC GGGUAGCGGU (-GAAAA)GC CAAUCGAACU 1441 CGGUGAUAGC UGGUUCUCCC CGAAAUGCAU (-UUAG)GUG CAGC|-GUCA CGUGG---U| 1501 -CCU|UGCC- G|AGGUAG|A GC-ACUGG-U UGGCCGA-UG |-GGCCC(Uc ac-)agGUUA 1561 CUGAGGUCAG -CCAAACUCC GAA-UG-|CC G-G-U-A--- AGUG--UGA| GCG-UGGCAG 1621 UGAGAC--CG C-GGGG(GAU AAG)CUUCGU -GGUC-GAGA GGG(-AAACA G-)CCCAGAU 1681 CACCGGCUAA G-GC|CCCG- AAGCG-UGUG -C-UGA-GUG ------GGAA AGGAUGUG-A 1741 AGCCGCUGU- GACAGCCAGG AGGUUGGC(U UAGAAGCA)G CCAU-CCU|C (UAA)G|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CUA GU-GGU-UU- -UGC|GCCGA CAAU-GUAG- 1861 CGGGGCUCAA GCACA-C|C| GCCGAAGCC| GUGG|cgucu uccg---(cg ugug------ 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- cgggggacg- GG-UAGGGGA G|-----CGU 2221 C-GUG-CG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CGGG-U 2341 GAAGCGG-C- G-GG(-GUGA -)CCC-AGCC GUGG|ACGCC G-UGCGAGUG AGAAUGC-AG 2401 GC|AUG-AGU A--GCGUU-U CAGAAG(UGA GAAA)CUUCU G|CGCC-GGA UGACCAAGGG 2461 UUCCUG-GGG CAGG-(UUGA U)CC|G-CCC AGGGUAAGU| CGG|G-ACCU AAGGCGAGGC 2521 C(GAUA)-G- GCGU-AGUCG AUGG-GCAAC GGG-(UU-GA UAUU)C-CCG U|AC|cc-g- 2581 cc-gug-gcg c--------- ---------- ---------- --------gu -----ucug- 2641 -----ccgc( uuc-g)gugg ---------- -------cag g--------- ---------- 2701 ---uaagcga u------ggg g--gga-cgc aggaaggua- gccc-au|cc c-agg(cg-- 2761 gugguu-gu- --)cc-uggg -|guaa---- ---------- ---gcau-gu aggg------ 2821 -ug-cgg-gg uagg(ca-aa -u-)cc|g-- ccccg-uguu a--------a gccc-gagau 2881 gcg-augc|c ga-|------ -------gcc g(-auug--) uggc------ ------gaag 2941 --ugggu-ga uccu-cua-| cugccgagaa a-agccuc-u a-gcga---- ------gc-g 3001 cuaugg--cg g|C|CCGUAC CCUAAACC(G ACUCU)GG|U GG-UCAGGU- A-(GAGAA)U 3061 ACCGAGGCGU ||UCGGGCGA ACCGCGGUU- ---------- ----AAGGAA CUAGGCAAAU 3121 UGCCCCCGUA AC(-UUCG)G GAGAAGGGGG |GCCUCUGCU -GGUGUA--- -------ggc 3181 a(-cgugc)u gccga----- ---agcugg- -uggggg-C| C(GCA)GAGA AUAGGCC-CA 3241 GG|CGACU-- ---GU(UUAC UAAAA)ACAC AGGUCCGUG| CGAAGUC(GU AA------)G 3301 ACGAAGU-AU ACGGACUGA- CGCCUGCCCG GU|GCCG-GA A-CGUUAAGG GGACGGGUUA 3361 GCGGC-CU-- (U-UCG)-GG GUU-----GC GA-AGCUCGG AACCUAAGCG |CCGGUAAAC 3421 |-GGC|GGUG GU(AACUAUA )ACCAUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GG-UCUGGGC ACUGUCUCAA CCGCGGACCC 3541 G|GCGAAAUU |GCACUAC-G AG(UAAAGAU G)CUCGUUAC GCGCAGC-AG GACGGAAAGA 3601 CCCCG-GG|A CCU-UCACUG C|AGCUUGGC AUU|GGCGUU UGGAAUGGCU UGUGUAGGAU 3661 AGGCGGGAGA CUGUGAAG-- CGGGCAC(GC CA)GUGUCCG UGGAGUCGCC -G-UUGAAAU 3721 ACCACU|CUG G-CUGUUUCG GAC-GUCUAA -CCCGGG--- -UCCC(--UU -AUC)-GGGA 3781 UCGGG-GACA GUGCCUGGUG GG-UAGUUUG ACUG(GGG)C GGUU|GCCUC C(UAA-AGGG 3841 UAAC)GGAGG C|G|C|CCAA AGGUCCCC|U CAGCCUGG(U UGGAAA)UCA GGCGUU-GA| 3901 GU(G|UAAGG )GCACAAGGG GGCUUAACUG UGAGAC(CGA CGG)GUCGAG CAGAUGC(GA 3961 AA)GC-AGGG |CCUAGUGAU CCGGCGGUGG CG(AGUGGA) AGC|GCCGUC GCUCAAC|GG 4021 CUAAAAGGUA CCC|CGGG|G AUAACAG|GC UGA--UCAUC CCCAAGA(G- UCC-AUA)UC 4081 GACGGGA-UG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GGAG 4141 U---A)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GCGA) -GACAGUU-C GGU-CCCUAU -CC|GCUGCG C-G|CG-UAG 4261 GAGACUU|GA -|GGGGGGC- UGU------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAACGG|ACG AACCUCUGGU GUGCCAGU|U GUGCC(GC-C A-)GGUGCA- CGGCUGGUUG 4381 GCU-ACGUUC GGUUGGGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAGCC CGCCCC|GAG 4441 AUGAGGUCUC C|CU|CCGG- -(GUUAA-)- -CCGG--GU- AAGG|-CU|C CCAG-(UAGA 4501 UG-A)CUGGG -UUGAUAG|G CCGG|UGGUG -GAAGCGCG- -(GUAA-)-- CGUGU|GG-A 4561 GCCG|A|CCG GUACUAAUA- AGCCGAGAG| GCUU~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS PURPLE.GAM 4759 bp RNA RNA 17-JAN-1993 DEFINITION PROTEOBACTERIA - GAMMA SUBDIVISION. ACCESSION No information KEYWORDS No information. SOURCE PROTEOBACTERIA - GAMMA SUBDIVISION. ORGANISM PROTEOBACTERIA - GAMMA SUBDIVISION. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 4759 others ORIGIN 1 -x~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~-)~|- ~~~~~~~~~~ 181 ~~~~~~|-~~ ~~~(~-~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~---- ---------- ---------- 301 ----~~~~~~ ~~~~~~~~~~ ~~~~~~---- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ------~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~|~ ~~-~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- 721 ---~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~-~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~-- -~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ -~~~-~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| -~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~-~~ ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 -~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 -~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~-~ ~~~~~~~~~~ |-~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~-~~~~| ~~~~~~~~~~ 1621 ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~-~~~~~ ~-~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~-~~~ ----~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~-~~- -~~~|~~~~~ ~~~~-~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~|-----~~~ 2221 ~-~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~- ~-~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 2401 ~~|~~~-~~~ ~-~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~-~~ ~~~~~~-~~~ ~~~~|~~~~- 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~------~~~ ~--~~~-~~~ ~~~~~~~~~- ~~~~-~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---- ---------- -~~~~~~~~~ ~~~~~~~~-- 2821 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~-----~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 --~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~-~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~-- --~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~---~~~~~ 3301 ~~~~~~~-~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~-~~ ~-~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~( ~~~)~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ 3721 ~~~~~~|~~~ ~~~-~~~~~~ ~~~~~-~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~-~~-~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~|~|~|~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~---~ ~~~~~~-~~~ 3901 ~|~~(~|~~~ ~~)~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~-~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~~~|~~~~ ~~~~~~~~~| 4021 ~~~~~~~~~~ ~~~~~|~~~~ |~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~|~~ ~~~(~~~~~~ 4141 ~~~--)-~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ -~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ -|~~~~~~~~ ~~~------- -------~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4381 ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~|~ ~~~~-~~~~~ 4501 ~~-~~~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS L.mucor 4759 bp RNA RNA 03-JUL-1997 DEFINITION Leucothrix mucor.; 23S ribosomal RNA; 23S rRNA gene. ACCESSION X87285 KEYWORDS 23S ribosomal RNA; 23S rRNA gene. SOURCE Leucothrix mucor. ORGANISM Leucothrix mucor. REFERENCE 1 (bases 1 to 2883) AUTHORS Bachleitner,M., Klugbauer,N., Springer,N., Lane,D., Nietupsky ,R., Weizenegger,M. and Schleifer,K.H. Ludwig,W., Rossello-Mora,R., Aznar,R., Klugbauer,S., Spring,S ., Reetz,K., Beimfohr,C., Brockmann,E., Kirchhof,G., Dorn,S., TITLE Comparative sequence analysis of 23S rRNA from proteobacteria JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2883) AUTHORS Ludwig,W. TITLE Direct Submission JOURNAL Submitted (18-MAY-1995) W. Ludwig, Lehrstuhl fuer Mikrobiologie, Technische Universitaet Muenchen, Muenchen, FRG STANDARD No information REFERENCE 3 (bases 1 to 2883) AUTHORS Ludwig,W., Rossello-Mora,R., Aznar,R., Klugbauer,S., Spring,S., Reetz,K., Beimfohr,C., Brockmann,E., Kirchhof,G. , Dorn,S., Bachleitner,M., Klugbauer,N., Springer,N., Lane, D., Nietupsky,R., Weizenegger,M. and Schleifer,K.H. TITLE Comparative sequence analysis of 23S rRNA from proteobacteria JOURNAL Syst. Appl. Microbiol. 18, 164-188 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X87285 BASE COUNT 773 a 629 c 870 g 611 t 1876 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------AA UCAAGUGAC- --UAAGCGUA UGUGGUGGAU 121 G|CCUAGG|C GAUAAG|AG| GC-GAUGAAG GA|CGUA(GU AA-UC-)U|- GCG-AAAAGC 181 CCCGGU|-GA GCU(G-AUAA ACA-)AGCUG UG-ACC-CGA GGAUG|UCCG AAUGGG(GAA 241 A)CCC|ggca c-u-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----auaa)- g-guguc-AU CG-UAAUCU( 481 GA-AUACA-- UA)GGA-UUA -C-G--AAG- C-UAAC|CC- GGAGAACU|G A(AACA)UCU 541 AAGUA-CCCG GAGGAACAGA AAUC(-AACC --)GAGAU|U CC-CUUAGUA GC(GGCGA)G 601 CGA-ACG-GG GA-CCA-GCC C--------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------uua a---gcggcu uuaaugau-a agaGAAc-ac g-u(u-ggga a)g-cgugac 781 |c(aga)guG GG(UGAUAGU )CCCGU-Auc u-gaaaucau uuu-agucgu -----gaa-- 841 ---------- ---------- -----AACGA GUAGGUCGGG A(CACGUG-A UA)UCCUGAU 901 UGAACAU-GG G-GG(GACCA U)CC-UCC-A AGGCUAA--- -AUACUCCUU AUCGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGCGAAAA-G AACCCC(GGA GA-)GGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCGC-AUACG UACAA-G-CA GUGGGAGCCU --GA-A---- 1081 --------(- ---uuua--) ---------- ---UUC-GGG UGACUGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAC-UCAU- CGUGGC-AAG CUUAAGC--( -GUAUA)--G 1201 C-GUAGGCGU AGG(GAAA-) CCGAGUCU(U AA-UA)GGGC GA-------- ---------- 1261 ---------- ------c-aa G-UCGCGGUC AGUA-GACCC GAAAC-CGA- GCGA-UCUAU 1321 CCAUGGC|CA GGUUGAAGGU GGGG(UAAC) AC-CUACUGG AGGACCGAAC C-CACGUAU( 1381 -GUUGAAAA) AUGCG|GGG- AUGAG-CUGU GGAUCGGAGU (-GAAAG)GC UAAUCAAGCU 1441 CGGAGAUAGC UGGUUCUCCU CGAAAUCUAU (-UUAG)GUA GAGC|-CUCA UGUA----U| 1501 -UAC|UCACG G|GGGUAG|A GC-ACUGU-U AUGGCUAGGG |-GGGCc(ug aCC)GCCUUA 1561 CCAACCCAUU -GCAAACUCC GAA-UA-|CC G-U-G-A--A GUA---GCA| GCA-UGGGAG 1621 UCACAC--GG C-GGGU(GCU AAC)GUCCGU -CGUG-GAAA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAAUU-ACAG -C-UCA-GUG ------GGAA ACGAUGUG-G 1741 GAAGGCACA- GACAGCCAGG AGGUUGGC(U UAGAAGCA)G CCAU-CCU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG GU-----CGA GU-CGG-CC- -UGC|GCGGA AGAU-UUAA- 1861 CGGGGCUCAA GCUGU-A|U| ACCGAAGCU| GCGG|aaucg ga-----(uu ua-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --uccgauu- GG-UAGAGGA G|-----CGU 2221 U-CUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCAA-U 2341 GAAGGUG-A- A-uc(-GUAA -)GGU--UUG CUGG|AGGUA U-CAGAAGUG CGAAUGC-UG 2401 AC|AUA-AGU A--ACGAUAA GACGGG(UGA AAAA)CCCGU C|CGCC-GAA AAUCCAAGGU 2461 UUCCUG-CGC AACG-(UUAA U)CG|G-CGC AGGGUUAGU| CGG|C-CCCU AAGGCGAGGC 2521 A(GAGA)-U- GCGU-AGUCG AUGG-GAAAC AGG-(UU-AA UAUU)C-CUG U|AC|cg-c- 2581 ua-aua-agu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga u------ggg g--uga-cgg agaaggcua- ggcu---|ag a-aca(ca-- 2761 guug-g-ug- --)ug-uauc -|-uaa---- ---------- ---gcgu-uu aggc------ 2821 -agagaa-cu uagg(ca-aa -u-)cc|g-- gguucuuaa- ---------- ugcu-gaggc 2881 gug-augg|c ga-|------ -----cgguu c(-uacg--) gaacugga-- ------guag 2941 -----uc-ga ugcc-aug-| cuuccaggaa a-aaccuc-u aagcuuca-- ------gc-u 3001 -uauua--gu g|A|CCGUAC UCUAAACG(G ACACA)CG|U GG-AUAGGA- U-(GAGAA)U 3061 UCCAAGGCGC ||UUGAGAGA ACUCUGGUG- ---------- ----AAGGAA CUAGGCAAAA 3121 UAGCACCGUA AC(-UUCG)G GAGAAGGUGC |GCCCCU--- -gacgguu-- ---------c 3181 a(-uagc-)u g--------- -----uu--- --ggggg-C| C(GCA)GAGA CCAGGUG-GC 3241 UG|CGACU-- ---GU(UUAU CAAAA)ACAC AGCACUCUG| CUAACGC(GA AA------)G 3301 CGGACGU-AU AGGGUGUGA- CGCCUGCCCG GU|GCCG-GA A-GGUUAAUU GAUGGGGUUA 3361 GC-------- (U-UCG)--- --------GC GA-AGCUCUU GAUCGAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-CGGCCAC ACUGUCUCCA CCAGAGGCUC 3541 A|GUGAAAUU |GAAAUCG-C AG(UUAAGAU G)CUGCGUAC CCGCGGC-UA GACGGAAAGA 3601 CCCCGUGC|A CCU-UUACUA C|AGCUUUGC ACU|GAACAU CGGGCCUACU UGUGUAGGAU 3661 AGCUGGGAGG CUUUGAAA-- CCGGGAC(GC UA)GUUCCGG UGGAGCCAAU -C-UUGAAAU 3721 ACCAGC|CUG G-UAGUUCUG AUG-UUCUAA -CCACGG--- -CCCC(--UG -AUC)-GGGG 3781 UUUGG-GACA GUGUAUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|UCCUC C(UAA-AGCG 3841 UAAC)GGAGG A|G|C|GCGA AGGUUCAC|U AAUCAUGG(U CGGAAA)UCA UGAGGU-UU| 3901 GU(G|CAAAG )GCAUAAGUG AGCUUGACUG CGAGAC(AGA CAC)GUCGAG CAGGUAC(GA 3961 AA)GU-AGGU |CUUAGUGAU CCGGUGGUUC UG(UAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CGC|CGGG|G AUAACAG|GC UGA--UACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GAAG 4141 C---G)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGUGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|CG-UUA 4261 GAAUAUU|GA -|GGAAAGC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG AACCUCUGGU GUACCGGU|U GUCAC(GC-C A-)GUGGCA- UAGCCGGGUA 4381 GCU-AAGUUC GGACAGGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAGCC CCUUCC|AAG 4441 AUGAGUAUGC U|CU|-GGAG A(cuaga-)U CUCC--CUA- AAGG|-GC|C GUUG-(AAGA 4501 CU-A)CGACG -UUGAUAG|G CACC|AUGUG -GAAGCGCA- -(GUAA-)-- UGUGU|GU-A 4561 GCUA|A|GGU GUACUAAUU- GCCCGUGAG| GCUUGA-UUC Uauaaccc|u g--------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ----||||| // LOCUS C.burnetii 4759 bp RNA RNA 11-JAN-191 DEFINITION Coxiella burnetii. ACCESSION No information KEYWORDS No information. SOURCE Coxiella burnetii. ORGANISM Coxiella burnetii. REFERENCE 1 (bases 1 to 2883) AUTHORS Afseth,G., Mo,Y. and Mallavia,L.P. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X79704 LOCUS CB23SRR 3509 bp DNA BCT 13-JUN-1994 DEFINITION C.burnetii 23Sr RNA gene ACCESSION X79704 KEYWORDS 23S ribosomal RNA; 23S rRNA gene. SOURCE Coxiella burnetii ORGANISM Coxiella burnetii Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Rickettsias and Chlamydias; Rickettsiales; Rickettsiaceae. REFERENCE 1 (bases 1 to 3509) AUTHORS Afseth,G., Mo,Y. and Mallavia,L.P. TITLE Identification of an IVS in the 23S rRNA gene of C. burnetii JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 3509) AUTHORS Afseth,G. JOURNAL Submitted (13-JUN-1994) to the EMBL/GenBank/DDBJ databases. G. Afseth, Washington State University, Dept of Microbiology, Pullman, WA 99164-4233, USA STANDARD full automatic COMMENT NCBI gi: 499172 FEATURES Location/Qualifiers source 1..3509 /organism="Coxiella burnetii" /isolate="RSA 493" /note="Nine mile" rRNA 22..1174 /gene="23S rRNA" rRNA 1617..3347 /gene="23S rRNA" rRNA 3392..3509 /gene="5s rRNA" misc_feature 1175..1616 /note="intervening sequence" misc_feature 3348..3391 /note="23S-5S intergenic spacer" CDS 1206..1520 /note="NCBI gi: 499173" /codon_start=1 /translation="MKKEISSFEDLVVFQKAYKLSLKLHKLTLSMPKEEQYGLQAKSV KQETICANIAEGFGKQSVSTAEFKRFILIAMGSADEMRVWLRYCFDLGYLNEKTWVGL PQ" BASE COUNT 972 a 711 c 1001 g 825 t ORIGIN BASE COUNT 896 a 645 c 923 g 740 t 1555 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- -------ugg 61 aaucauuuag gguugcau|- --------GG UCAAGUGAA- --UAAGCGCA UAUGGUGGAU 121 G|CCUUGG|C AGUAAG|AG| GC-GAUGAAG GA|CGUA(GU AG-CC-)U|- GCG-AUAACU 181 UCGGGG|-A- GCU(G-GCAA ACA-)AGCGA UG-AUC-CGg aCAUU|UCCG AAUGGG(GAA 241 A)CCC|aacc u---(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----uucg)- --agguu-au -g-uauacu( 481 ga-AUUCA-- ua)ggu-aua -c-g--aGG- C-gaAC|CU- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCA GAGGAAAAGA AAUC(-AACC --)GAGAU|U CC-GUCAGUA GC(GGCGA)G 601 CGA-AAG--- -A-ACA-GCC CAGUU----- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 --------ac uaaaucauua uuuguucu-a gcaGAAu-gu u-c(u-ggaa a)g-uucagc 781 |c(aua)gcG GG(UGAUAGC )CCGGU-Acc c-gaaagagu aaa-uaaugu ggg----uaa 841 c--------- ---------- -----gauGA GUAGGUCGGG A(CACGUG-G UA)UCUUGAC 901 UGAACAU-GG G-GG(GACCA U)CC-UCC-A AGGCUAA--- -AUACUCCUU ACUGACCGAU 961 AGCG-AAC-C AGUACC(GUG A)-GGAA-AG GUGAAAAA-G AACCCC(GGC GA-)GGG-A- 1021 -GUGAAA-UA GAACCUGAAA CCGU-AUGCG UACAA-G-CU GUAGGAGCAU --uu-c---- 1081 --------(- ---uucg--) ---------- ---gaa-auG UGACUGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAC-UUGU- UGUAGC-GAG CUUAACC--( -GUCUA)--G 1201 G-GGAGGCGU AGG(GAAA-) CCGAGUCC(G AA-AU)GGGC GU-------- ---------- 1261 ---------- ------u-ua G-UUGCAACG AGUA-GACCG AACCC-GAA- GCGA-UCUAU 1321 CUAUGGC|CA GGGUGAAGGU CAGG(UAAC) AC-UGACUGG AGG-CCGAAC C--ACUAAU( 1381 -GUGAAAAA) GUUAG|GGG- AUGAG-CUGU GGAUAGGAGU (-GAAAG)GC UAAUCAAGCU 1441 CGGAGAUAGC UGGUUCUCCU CGAAAGCUAU (-UUAG)GUA GCGC|-CUCG UGUA----U| 1501 -gac|ucuug g|GGGUAG|A GC-ACUGU-U UCGGCUA-GG |-GGGCC(AU CCC)GGCCUA 1561 CCAAACCGAG -GCAAACUCC GAA-UA-|CC A-a-g-a--a guuu---uA| gca-CGGGAG 1621 ACACAC--ug cuGGGU(GAU AAG)GUCCGU -GGUG-GAAA GG-(--AACG --)-CCAGAU 1681 CGCCAGAUCG C-AG|CU-A- AGGUCcaaau -a-cac-gua gu----GGAA ACGAUGUG-G 1741 GAAGGCUCA- GACAGCCAGG ACCUUGGC(U UAGAAGCA)G CCAU-CCU|U (UAA)A|GAA 1801 AGC(CUAAUA )GC|UCACUG GU-----CGA GU-CGU-CC- -UGC|GCGGA AGAU-UUAA- 1861 CGGGGCUCAA ACUGU-G|U| ACCGAAGCU| GCGG|cauca gaagaca(ga ugacagauga 1921 cagaaauaug aaaaaagaaa uaucuagcuu ugaagauuua gugguuuuuc agaaagcgua 1981 uaagcuuucu uuaaagcuuc auaaacuaac uuuaaguaug ccuaaagaag agcaauaugg 2041 a>.1078 /note="large subunit ribosomal RNA" /evidence=experimental /product="23S rRNA" BASE COUNT 311 a 225 c 302 g 223 t 17 others ORIGIN BASE COUNT 311 a 225 c 302 g 223 t 3698 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGUGAC- --UAAGCGUA CACGGUGGAU 121 G|CCUUGG|C AGUCAG|AG| GC-GAUGAAG GA|CGUA(GU AA-CU-)U|- GCG-AUAAGC 181 GUAGAU|-GA GGC(A-GU-A ACA-)SCCAC UUGAGU-CUA CGAUU|UCCG AAUGGG(GAA 241 A)CCC|acug gc--(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----auaa)- -gccagu-au ca-uugagu( 481 GA-AUACA-- UA)GCU-CAA -U-G--AAG- C-GAAC|CG- GGAGAACU|G A(AACA)UCU 541 AAGUA-CCCC GAGGAAAAGA AAUC(-aacc --)GAGAU|U CC-GAAAGUA GC(GGCGA)G 601 CGA-AAU-UK GR-UUA-GCC CU-------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- u-aagcuuua cauguguu-a gacGAAc-gg u-c(u-ggaa a)g-uccgac 781 |g(aua)cAG GG(UGAUAGU )CCCGU-Agu u-gwcgaugc aug-uucag- ----ugaaau 841 c--------- ---------- --------GA GUAGGGCGGG A(CACGUG-U UA)UCCUGUC 901 UGAAUAU-GG G-GG(GACCA U)CC-UWCCA AGGCURR--- -AUACUCCUG ACUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGr-rA gsCGmAAA-G AACCCC(UGU GA-)GGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCGU-GUACG UACAA-r-CA GUAGGAGCAC --C------- 1081 --------(- ---uucg--) ---------- ----UG-GUG UGACUKCGUA CCU(UUU-GU 1141 AU|W)AUGG| -GUCAGCGAC UUAU-AUUC- AGUGGC-AAG GUUAACC--( -AUCUA)--G 1201 G-GGAGCCGU AGG(GAAM-) CCGAGUCU(U AA-CU)GGGC SC-------- ---------- 1261 ---------- ------caua G-UCUCUGGA UAUA-GACCC GAAAC-CGA- GUGA-UCUAG 1321 CCAUGGg|CA GGUUGAAGGU UGAG(UAAC) AU-CAACUGG AGGACCGAAC C-GACUAAU( 1381 -GUUGAAAA) AUUAG|CGG- AUGAC-UUGU GGCUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 CGGAGAUAGC UGGUUCUCCC CGAAAGCUAU (-UUAG)GUA GCGC|-CUCG GACGA---A| 1501 -UAC|UACUG G|GGGUAG|A GC-ACUGU-U AAGGCUA-GG |-GGGUC(AU CCC)GACUUA 1561 CCAACCCUUU -GCAAACUCC GAA-UA-|CC A-G-U-A--A GUAC----U| AUC-CGGGAG 1621 ACACAC--GG C-GGGU(GCU AAC)GUCCGU -CGUG-GAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAUU--ACAG -C-UAA-GUG ------GGAA ACGAUGUG-G 1741 GAAGGCUUA- GACAGCUAGG AUGUUGRC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAA 1801 A~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~-~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~<~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS V.vulnif.2 4759 bp RNA RNA 03-JUL-1997 DEFINITION Vibrio vulnificus.; 23S ribosomal RNA; 23S rRNA gene. ACCESSION X87293 KEYWORDS 23S ribosomal RNA; 23S rRNA gene. SOURCE Vibrio vulnificus. ORGANISM Vibrio vulnificus. REFERENCE 1 (bases 1 to 2888) AUTHORS Bachleitner,M., Klugbauer,N., Springer,N., Lane,D., Nietupsky ,R., Weizenegger,M. and Schleifer,K.H. Ludwig,W., Rossello-Mora,R., Aznar,R., Klugbauer,S., Spring,S ., Reetz,K., Beimfohr,C., Brockmann,E., Kirchhof,G., Dorn,S., TITLE Comparative sequence analysis of 23S rRNA from proteobacteria JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2888) AUTHORS Ludwig,W. TITLE Direct Submission JOURNAL Submitted (18-MAY-1995) W. Ludwig, Lehrstuhl fuer Mikrobiologie, Technische Universitaet Muenchen, Muenchen, FRG STANDARD No information REFERENCE 3 (bases 1 to 2888) AUTHORS Ludwig,W., Rossello-Mora,R., Aznar,R., Klugbauer,S., Spring,S., Reetz,K., Beimfohr,C., Brockmann,E., Kirchhof,G. , Dorn,S., Bachleitner,M., Klugbauer,N., Springer,N., Lane, D., Nietupsky,R., Weizenegger,M. and Schleifer,K.H. TITLE Comparative sequence analysis of 23S rRNA from proteobacteria JOURNAL Syst. Appl. Microbiol. 18, 164-188 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X87293 BASE COUNT 767 a 613 c 878 g 630 t 1871 others ORIGIN 1 ~~-------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGUGAC- --UAAGCGUA CACGGUGGAU 121 G|CCUUGG|C AGUCAG|AG| GC-GAUGAAG GA|CGUA(GU AA-CU-)U|- GCG-AUAAGC 181 GUAGAU|-GA GGC(A-GU-A ACA-)GCCAC UUGAGU-CUA CGAUU|UCCG AAUGGG(GAA 241 A)CCC|ACUG GC--(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----AUAA)- -GCCAGU-AU CA-UUGAGU( 481 GA-AUACA-- UA)GCU-CAA -U-G--AAG- C-GAAC|CG- GGAGAACU|G A(AACA)UCU 541 AAGUA-CCCC GAGGAAAAGA AAUC(-AACC --)GAGAU|U CC-GAAAGUA GC(GGCGA)G 601 CGA-AAU-UG GA-UUA-GCC CU-------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- u-aagcuuua cauguguu-a gacGAAc-gg u-c(u-ggaa a)g-uccgac 781 |g(aua)cAG GG(UGAUAGU )CCCGU-Agu u-gacgaugc aug-uucag- ----ugaaau 841 c--------- ---------- --------GA GUAGGGCGGG A(CACGUG-U UA)UCCUGUC 901 UGAAUAU-GG G-GG(GACCA U)CC-UCC-A AGGCUAA--- -AUACUCCUG ACUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGCGAAAA-G AACCCC(UGU GA-)GGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCGU-GUACG UACAA-G-CA GUAGGAGCAC --C------- 1081 --------(- ---uucg--) ---------- ----UG-GUG UGACUGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAU-AUUC- AGUGGC-AAG GUUAACC--( -AUCUA)--G 1201 G-GGAGCCGU AGG(GAAA-) CCGAGUCU(U AA-CU)GGGC GC-------- ---------- 1261 ---------- ------caua G-UCUCUGGA UAUA-GACCC GAAAC-CGA- GUGA-UCUAG 1321 CCAUGGG|CA GGUUGAAGGU UGAG(UAAC) AU-CAACUGG AGGACCGAAC C-GACUAAU( 1381 -GUUGAAAA) AUUAG|CGG- AUGAC-UUGU GGCUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 CGGAGAUAGC UGGUUCUCCC CGAAAGCUAU (-UUAG)GUA GCGC|-CUCG GACGA---A| 1501 -UAC|UACUG G|GGGUAG|A GC-ACUGU-U AAGGCUA-GG |-GGGUC(AU CCC)GACUUA 1561 CCAACCCUUU -GCAAACUCC GAA-UA-|CC A-G-U-A--A GUAC----U| AUC-CGGGAG 1621 ACACAC--GG C-GGGU(GCU AAC)GUCCGU -CGUG-GAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAU-U-ACAG -C-UAA-GUG ------GGAA ACGAUGUG-G 1741 GAAGGCUUA- GACAGCUAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUA GU-----CGA GU-CGG-CC- -UGC|GCGGA AGAU-GUAA- 1861 CGGGGCU-AA GUUGU-A|A| ACCGAAGCU| GCGG|caaug u------(uc uauga----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ---acauug- GG-UAGGGGA G|-----CGU 2221 U-CUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCGU-U 2341 GAAGGUG-U- G-UU(-GUAA -)AGC--AUG CUGG|AGGUA U-CAGAAGUG CGAAUGC-UG 2401 AC|AUG-AGU A--ACGACAA GGGGGG(UGA AAAA)CCUCC C|CGCC-GGA AGACCAAGGG 2461 UUCCUG-UCC AACG-(UUAA U)CG|G-GGC AGGGUAAGU| CGA|C-CCCU AAGGCGAGGC 2521 U(GAAA)-A- GCGU-AGUCG AUGG-GAAAC GGG-(UU-AA UAUU)C-CCG U|AC|UU-c- 2581 uu-aca-auu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga u------ggg g--gga-cgg agaaggcua- ggug-g-|gc c-ugg(cg-- 2761 acgg-u-ugu --)cc-aggu -|ucaa---- ---------- ---gugc-gu aggc------ 2821 -ugagug-uu uagg(ua-aa -u-)cc|g-- gauacucuua a--------- ggcu-gagac 2881 acg-acgu|c ga-|------ ------gcua c(-uacg--) guagu----- ------gaag 2941 --ucauu-ga ugcc-aug-| cuuccaggaa a-agccuc-u aagcuucag- -------a-u 3001 -uguaa--gg a|A|UCGUAC CCCAAACC(G ACACA)GG|U GG-UCGGGU- A-(GAGAA)U 3061 ACCAAGGCGC ||UUGAGAGA ACUCGGGUG- ---------- ----AAGGAA CUAGGCAAAA 3121 UGGUACCGUA AC(-UUCG)G GAGAAGGUAC |gcucuug-a -ugg-ug--- -----aaguc 3181 c(-cuugc)g gaug------ ---gagcug- acgagag-U| C(GCA)GAUA CCAGGUG-GC 3241 UG|CAACU-- ---GU(UUAU UAAAA)ACAC AGCACUGUG| CAAAAUC(GU AA------)G 3301 AUGACGU-AU ACGGUGUGA- CGCCUGCCCG GU|GCCG-GA A-GGUUAAUU GAUGGGGUUA 3361 GC-------- (G-UAA)--- --------GC GA-AGCUCUU GAUCGAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAU GA-UGGCCAC GCUGUCUCCA CCCGAGACUC 3541 A|GUGAAAUU |GAAAUCG-C UG(UGAAGAU G)CAGUGUAC CCGCGGC-UA GACGGAAAGA 3601 CCCCGUGA|A CCU-UUACUA C|AGCUUGGC ACU|GAACAU UGAACCUACA UGUGUAGGAU 3661 AGGUGGGAGG CUUUGAAG-- ACGUGAC(GC CA)GUUGCGU UGGAGCCGUC -C-UUGAAAU 3721 ACCACC|CUU G-UAUGUUUG AUG-UUCUAA -CGUUGG--- -CCCC(--UA -AUC)-GGGG 3781 UUGCG-GACA GUGCCUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|UCCUC C(CAA-AGAG 3841 UAAC)GGAGG A|G|C|ACGA AGGUGGGC|U AAUCACGG(U UGGACA)UCG UGAGGU-UA| 3901 GU(G|CAAUG )GCAUAAGCC CGCUUAACUG CGAGAA(UGA CGG)UUCGAG CAGGUGC(GA 3961 AA)GC-AGGU |CAUAGUGAU CCGGUGGUUC UG(AAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UGA--UACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GAAG 4141 U---C)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGUGGUAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|CG-UUG 4261 GAAGAUU|GA -|AGGGGGC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG AACCUCUGGU GUUCGGGU|U GUGUC(GC-C A-)GACGCA- UUGCCCGGUA 4381 GCU-AAGUUC GGAAUCGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAGCG AGCCCU|GAG 4441 AUGAGUCUUC C|CU|Gauac u(-uuc--)a guauc-CUA- AAGG|-GU|U GUUC-(GAGA 4501 CU-A)GAACG -UUGAUAG|G CAGG|GUGUG -UAAGCGCU- -(GUGA-)-- GGCGU|UG-A 4561 GCUA|A|CCU GUACUAAUU- GCCCGUGAG| GCUUAA-CCA U-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS V.vulnif.3 4759 bp RNA RNA 03-JUL-1997 DEFINITION Vibrio vulnificus.; 23S ribosomal RNA; 23S rRNA gene. ACCESSION X87294 KEYWORDS 23S ribosomal RNA; 23S rRNA gene. SOURCE Vibrio vulnificus. ORGANISM Vibrio vulnificus. REFERENCE 1 (bases 1 to 2888) AUTHORS ,R., Weizenegger,M. and Schleifer,K.H. Ludwig,W., Rossello-Mora,R., Aznar,R., Klugbauer,S., Spring,S ., Reetz,K., Beimfohr,C., Brockmann,E., Kirchhof,G., Dorn,S., Bachleitner,M., Klugbauer,N., Springer,N., Lane,D., Nietupsky TITLE proteobacteria Comparative sequence analysis of 23S rRNA from JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2888) AUTHORS Ludwig,W. TITLE Direct Submission JOURNAL Submitted (18-MAY-1995) W. Ludwig, Lehrstuhl fuer Mikrobiologie, Technische Universitaet Muenchen, Muenchen, FRG STANDARD No information REFERENCE 3 (bases 1 to 2888) AUTHORS Ludwig,W., Rossello-Mora,R., Aznar,R., Klugbauer,S., Spring,S., Reetz,K., Beimfohr,C., Brockmann,E., Kirchhof,G. , Dorn,S., Bachleitner,M., Klugbauer,N., Springer,N., Lane, D., Nietupsky,R., Weizenegger,M. and Schleifer,K.H. TITLE Comparative sequence analysis of 23S rRNA from proteobacteria JOURNAL Syst. Appl. Microbiol. 18, 164-188 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X87294 BASE COUNT 767 a 613 c 878 g 630 t 1871 others ORIGIN 1 ~~-------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGUGAC- --UAAGCGUA CACGGUGGAU 121 G|CCUUGG|C AGUCAG|AG| GC-GAUGAAG GA|CGUA(GU AA-CU-)U|- GCG-AUAAGC 181 GUAGAU|-GA GGC(A-GU-A ACA-)GCCAC UUGAGU-CUA CGAUU|UCCG AAUGGG(GAA 241 A)CCC|ACUG GC--(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----AUAA)- -GCCAGU-AU CA-UUGAGU( 481 GA-AUACA-- UA)GCU-CAA -U-G--AAG- C-GAAC|CG- GGAGAACU|G A(AACA)UCU 541 AAGUA-CCCC GAGGAAAAGA AAUC(-AACC --)GAGAU|U CC-GAAAGUA GC(GGCGA)G 601 CGA-AAU-UG GA-UUA-GCC CU-------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- u-aagcuuua cauguguu-a gacGAAc-gg u-c(u-ggaa a)g-uccgac 781 |g(aua)cAG GG(UGAUAGU )CCCGU-Agu u-gacgaugc aug-uucag- ----ugaaau 841 c--------- ---------- --------GA GUAGGGCGGG A(CACGUG-U UA)UCCUGUC 901 UGAAUAU-GG G-GG(GACCA U)CC-UCC-A AGGCUAA--- -AUACUCCUG ACUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGCGAAAA-G AACCCC(UGU GA-)GGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCGU-GUACG UACAA-G-CA GUAGGAGCAC --C------- 1081 --------(- ---uucg--) ---------- ----UG-GUG UGACUGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAU-AUUC- AGUGGC-AAG GUUAACC--( -AUCUA)--G 1201 G-GGAGCCGU AGG(GAAA-) CCGAGUCU(U AA-CU)GGGC GC-------- ---------- 1261 ---------- ------caua G-UCUCUGGA UAUA-GACCC GAAAC-CGA- GUGA-UCUAG 1321 CCAUGGG|CA GGUUGAAGGU UGAG(UAAC) AU-CAACUGG AGGACCGAAC C-GACUAAU( 1381 -GUUGAAAA) AUUAG|CGG- AUGAC-UUGU GGCUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 CGGAGAUAGC UGGUUCUCCC CGAAAGCUAU (-UUAG)GUA GCGC|-CUCG GACGA---A| 1501 -UAC|UACUG G|GGGUAG|A GC-ACUGU-U AAGGCUA-GG |-GGGUC(AU CCC)GACUUA 1561 CCAACCCUUU -GCAAACUCC GAA-UA-|CC A-G-U-A--A GUAC----U| AUC-CGGGAG 1621 ACACAC--GG C-GGGU(GCU AAC)GUCCGU -CGUG-GAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAU-U-ACAG -C-UAA-GUG ------GGAA ACGAUGUG-G 1741 GAAGGCUUA- GACAGCUAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUA GU-----CGA GU-CGG-CC- -UGC|GCGGA AGAU-GUAA- 1861 CGGGGCU-AA GUUGU-A|A| ACCGAAGCU| GCGG|caaug u------(uc uauga----- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ---acauug- GG-UAGGGGA G|-----CGU 2221 U-CUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCGU-U 2341 GAAGGUG-U- G-UU(-GUAA -)AGC--AUG CUGG|AGGUA U-CAGAAGUG CGAAUGC-UG 2401 AC|AUG-AGU A--ACGACAA GGGGGG(UGA AAAA)CCUCC C|CGCC-GGA AGACCAAGGG 2461 UUCCUG-UCC AACG-(UUAA U)CG|G-GGC AGGGUAAGU| CGA|C-CCCU AAGGCGAGGC 2521 U(GAAA)-A- GCGU-AGUCG AUGG-GAAAC GGG-(UU-AA UAUU)C-CCG U|AC|UU-c- 2581 uu-aca-auu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga u------ggg g--gga-cgg agaaggcua- ggug-g-|gc c-ugg(cg-- 2761 acgg-u-ugu --)cc-aggu -|ucaa---- ---------- ---gugc-gu aggc------ 2821 -ugagug-uu uagg(ua-aa -u-)cc|g-- gauacucuua a--------- ggcu-gagac 2881 acg-acgu|c ga-|------ ------gcua c(-uacg--) guagu----- ------gaag 2941 --ucauu-ga ugcc-aug-| cuuccaggaa a-agccuc-u aagcuucag- -------a-u 3001 -uguaa--gg a|A|UCGUAC CCCAAACC(G ACACA)GG|U GG-UCGGGU- A-(GAGAA)U 3061 ACCAAGGCGC ||UUGAGAGA ACUCGGGUG- ---------- ----AAGGAA CUAGGCAAAA 3121 UGGUACCGUA AC(-UUCG)G GAGAAGGUAC |gcucuug-a -ugg-ug--- -----aaguc 3181 c(-cuugc)g gaug------ ---gagcug- acgagag-U| C(GCA)GAUA CCAGGUG-GC 3241 UG|CAACU-- ---GU(UUAU UAAAA)ACAC AGCACUGUG| CAAAAUC(GU AA------)G 3301 AUGACGU-AU ACGGUGUGA- CGCCUGCCCG GU|GCCG-GA A-GGUUAAUU GAUGGGGUUA 3361 GC-------- (G-UAA)--- --------GC GA-AGCUCUU GAUCGAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAU GA-UGGCCAC GCUGUCUCCA CCCGAGACUC 3541 A|GUGAAAUU |GAAAUCG-C UG(UGAAGAU G)CAGUGUAC CCGCGGC-UA GACGGAAAGA 3601 CCCCGUGA|A CCU-UUACUA C|AGCUUGGC ACU|GAACAU UGAACCUACA UGUGUAGGAU 3661 AGGUGGGAGG CUUUGAAG-- ACGUGAC(GC CA)GUUGCGU UGGAGCCGUC -C-UUGAAAU 3721 ACCACC|CUU G-UAUGUUUG AUG-UUCUAA -CGUUGG--- -CCCC(--UA -AUC)-GGGG 3781 UUGCG-GACA GUGCCUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|UCCUC C(CAA-AGAG 3841 UAAC)GGAGG A|G|C|ACGA AGGUGGGC|U AAUCACGG(U UGGACA)UCG UGAGGU-UA| 3901 GU(G|CAAUG )GCAUAAGCC CGCUUAACUG CGAGAA(UGA CGG)UUCGAG CAGGUGC(GA 3961 AA)GC-AGGU |CAUAGUGAU CCGGUGGUUC UG(AAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UGA--UACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GAAG 4141 U---C)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGUGGUAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|CG-UUG 4261 GAAGAUU|GA -|AGGGGGC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG AACCUCUGGU GUUCGGGU|U GUGUC(GC-C A-)GACGCA- UUGCCCGGUA 4381 GCU-AAGUUC GGAAUCGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAGCG AGCCCU|GAG 4441 AUGAGUCUUC C|CU|Gauac u(-uuc--)a guauc-cuA- AAGG|-GU|U GUUC-(GAGA 4501 CU-A)GAACG -UUGAUAG|G CAGG|GUGUG -UAAGCGCU- -(GUGA-)-- GGCGU|UG-A 4561 GCUA|A|CCU GUACUAAUU- GCCCGUGAG| GCUUAA-CCA U-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS V.choler.1 4759 bp RNA RNA 11-JAN-191 DEFINITION Vibrio cholerae. ACCESSION No information KEYWORDS No information. SOURCE Vibrio cholerae. ORGANISM Vibrio cholerae. REFERENCE 1 (bases 1 to 2888) AUTHORS Bennison,B.W., Reeves,R.H. and LaRock,P.A JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U10952 LOCUS VCU10952 1082 bp DNA BCT 01-JAN-1995 DEFINITION Vibrio cholerae ATCC 35971 23S rRNA gene, partial sequence. ACCESSION U10952 KEYWORDS . SOURCE Vibrio cholerae. ORGANISM Vibrio cholerae Eubacteria; Proteobacteria; gamma subdivision; Vibrionaceae; Vibrio. REFERENCE 1 (bases 1 to 1082) AUTHORS Bennison,B.W., Reeves,R.H. and LaRock,P.A. TITLE Ribosomal DNA Probes for Vibrio Species JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 1082) AUTHORS Reeves,R.H. TITLE Direct Submission JOURNAL Submitted (16-JUN-1994) Robert H. Reeves, Florida State University, Department of Biological Science, Tallahassee, FL 32306-2043, USA STANDARD full automatic COMMENT NCBI gi: 606869 FEATURES Location/Qualifiers source 1..1082 /strain="ATCC 35971" /organism="Vibrio cholerae" rRNA 1..>1082 /note="large subunit ribosomal RNA" /evidence=experimental /product="23S rRNA" BASE COUNT 262 a 212 c 285 g 188 t 135 others ORIGIN BASE COUNT 262 a 212 c 285 g 188 t 3812 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAANUGGC- ucaccGCGau -gnGNUGGAU 121 G|CCUGGA|G AAUCAG|AN| GC-GGUGCNG GA|CGUA(CU AA-GA-)U|- ANG-AUAAGG 181 GCAGAc|ugu gac(A-GU-n AGA-)unnGC CUGAGN-CUU CGGUU|UNCG GGuggn(gaa 241 n)auc|agcu auau(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- -----cau)- --cagau-cc ug-augugu( 481 ga-AUANA-- ua)gug-uca -g-a--gAG- C-agAC|CG- GGAGAACU|G A(AACA)UCU 541 WAGUa-cscc gAGGAGRAGA MAUC(-aacc --)GAGAU|U CC-GGUAGUW GC(GKCGA)G 601 Cgm-amC-UG GA-UUa-scC CA-------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------uay gmacucggug awgua-gu-- gu-gmkc-ar g-c(u-kgaa a)g-cuuggc 781 |g(aua)cAG GG(UGAUAKC )CCCGU-Aac c-gacgcnuc auc-gagcg- ----ugaaau 841 c--------- ---------- --------GA GUAGGGCGGG A(CACGUG-A UA)UCCUGUC 901 UGAAUAU-GG G-GG(GACCA U)CC-UCC-A AGRCUAA--- -AUACUCCUG WCUGMCCGAU 961 AGUG-wrC-C AGUACC(GUG w)-GGGA-AA GrCGmrAA-G AACCCC(UGU GA-)GGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCGU-GUACG wnccA-G-CA GYAGGARCAC --c------- 1081 --------(- ---uncgk-) ---------- -----g-GUG UGACUGCGYA CCU(Ugucgk 1141 au|w)RUGG| -NKCAGCGAC UCAW-AUUC- AKUSGC-rAG knUACCC--( -SUAUW)--G 1201 G-GGAGCCGU AGC(GAAA-) GCGAGUCU(K AA-CU)GGGC GU-------- ---------- 1261 ---------- ------u-na g-ucucugga yaua-GACCC GAAAC-CGG- GUGA-UCUAS 1321 CCAUGGK|CA GGUUGAAGGU UGAG(UAAC) AY-CRACUGG AGGACCGAAC C-GACUAAU( 1381 -GUUGAAAA) AUUAG|CGG- AUGAC-YUGU GGCUAGGGGU (aGAAAG)SC CAAUCMAACU 1441 CGGAGAWARC UGGUUCUCCC CGAAARCYAU (-UURG)gya rcsc|-yycr gwcgw---a| 1501 -wAC|UAYUG G|GGGUAR|A RC-MCUKU-U WGGGcgurGG |-GSSYC(WU YCC)GAYUUM 1561 CCAACYCWRU -SCAAMCYCS GAA-UM-|CC A-G-U-A--a guwc----W| AUY-SGGRAK 1621 AMRCAC--GK S-GGKU(RCU ARC)GYCCKU -CGUG-GAGR GGG(-AAMCA A-)CCMAGMC 1681 CSCCASCUAR G-KU|CCCM- AAGW--AWUG -C-UAA-GUG ------GGAA ACGAUGUG-G 1741 GAAkGCUCA- GACARCUAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAA 1801 A~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~-~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~<~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS V.choler.2 4759 bp RNA RNA 11-JAN-191 DEFINITION Vibrio cholerae. ACCESSION No information KEYWORDS No information. SOURCE Vibrio cholerae. ORGANISM Vibrio cholerae. REFERENCE 1 (bases 1 to 2888) AUTHORS Bennison,B.W., Reeves,R.H. and LaRock,P.A. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U10956 LOCUS VCU10956 1077 bp DNA BCT 01-JAN-1995 DEFINITION Vibrio cholerae ATCC 14035 23S rRNA gene, partial sequence. ACCESSION U10956 KEYWORDS . SOURCE Vibrio cholerae. ORGANISM Vibrio cholerae Eubacteria; Proteobacteria; gamma subdivision; Vibrionaceae; Vibrio. REFERENCE 1 (bases 1 to 1077) AUTHORS Bennison,B.W., Reeves,R.H. and LaRock,P.A. TITLE Ribosomal DNA Probes for Vibrio Species JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 1077) AUTHORS Reeves,R.H. TITLE Direct Submission JOURNAL Submitted (16-JUN-1994) Robert H. Reeves, Florida State University, Department of Biological Science, Tallahassee, FL 32306-2043, USA STANDARD full automatic COMMENT NCBI gi: 606872 FEATURES Location/Qualifiers source 1..1077 /strain="ATCC 14035 (type strain)" /organism="Vibrio cholerae" rRNA 1..>1077 /note="large subunit ribosomal RNA" /evidence=experimental /product="23S rRNA" BASE COUNT 299 a 229 c 301 g 210 t 38 others ORIGIN BASE COUNT 299 a 229 c 301 g 210 t 3720 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGUGAC- --UAAGCGUA CACGGUGGAU 121 N|CCUGGG|C AGUCAG|AG| GC-GAUGNAG GA|CGUA(CU AA-CU-)U|- GCG-AUAAGC 181 GCAGAU|-AA GGC(A-GU-A AGA-)GCCGU UUGAGU-CUG CGAUU|UCCG AAUGGG(GAA 241 A)CCC|aacu gc--(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----auaa)- -gcaguu-ac ug-uuaacu( 481 ga-AUACA-- ua)ggu-uaa -c-a--gAn- C-aaAC|CG- GGGGAACU|G A(AACA)UCU 541 AAGUa-cccc gAGGAGAAGA AAUC(-acac c-)GAGAU|U CC-GGUAGUA AC(GGCGA)G 601 CGA-acC-UG GA-UUA-GCC CU-------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -------uaa gcacucggug ragua----- gguGAAc-aa g-c(u-ggaa a)r-cuuggc 781 |g(aua)cAG GG(UGAUAGC )CCCGU-AAc c-gacgcuuc auc-gagck- ----ugaaau 841 c--------- ---------- --------GA GUAGGGCGGG A(CACGUG-A UA)UCCUGUC 901 UGAAUAU-GG G-GG(GACCA U)CC-UCC-A AGGCUAA--- -AUACUCCUG WCUGMCCGAU 961 AGUG-wrC-C AGUACC(GUG w)-GGGA-rA GGCGmAAA-G AACCCC(UGU GA-)GGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCgu-guwCG wACmA-G-CA GUAGGAGCAC --cy------ 1081 --------(- ---ucgu--) ---------- -----G-GUG UGACUGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAU-AUUC- AGUGGC-AAG GUUAACC--( -GUAUA)--G 1201 G-GGAGCCGU AGC(GAAA-) GCGAGUCY(U AA-CU)GGGC GC-------- ---------- 1261 ---------- ------u-ca g-ucucugga uaua-GACCC GAAAC-CGG- GUGA-UCUAK 1321 CCAUGGG|CA GGWUGAAGGU UGAG(UAAC) AU-CAACUGG AGGACCGAAC C-GACUAAU( 1381 -GUUGAAAA) AUUAG|CGG- AUGAC-YUGU GGCUAGGGGU (-GAAAG)SC CAAUCAAACU 1441 CGGAGAUASC UGGUUCUCCC CGAAASCUAU (-UUAG)GUA kcsc|-CUCk gwcGA---A| 1501 -UAC|UACUG G|GGGUAG|A GC-wCUGU-U RAGKCUA-GG |-GGGUC(AU CCC)GACUUM 1561 CCAACCCUUU -SCAAACUCC GAA-UA-|CC A-G-U-A--a kumc----U| AUC-CGGGAG 1621 ACACAC--GG C-GGGU(GCU AAC)GUCCGU -YGUG-GAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCm- AARU--AUUG -C-UAA-GUG ------GGAA ACGAUGUG-G 1741 GAAGGCUCA- GACAGCUAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAA 1801 A~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~-~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~<~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS R.amylophi 4759 bp RNA RNA 12-JAN-1988 DEFINITION Ruminobacter amylophilus. ACCESSION No information KEYWORDS No information. SOURCE Ruminobacter amylophilus. ORGANISM Ruminobacter amylophilus. REFERENCE 1 (bases 1 to 2888) AUTHORS No information JOURNAL Tue Apr 12 19:03:38 1988 STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X06765 published in NAR 16:2345(1988)Spiegl H., Ludwig W., Schleifer K.H., Stackebrandt E. LOCUS RUARRN23S 2867 bp ss-mRNA BCT 30-SEP-1988 DEFINITION Ruminobacter amylophilus 23S rRNA. ACCESSION X06765 KEYWORDS 23S ribosomal RNA; ribosomal RNA. SOURCE Ruminobacter amylophilus. ORGANISM Ruminobacter amylophilus Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Anaerobic gram-negative straight, curved and helical rods; Bacteroidaceae. REFERENCE 1 (bases 1 to 2867) AUTHORS Stackebrandt,E. JOURNAL Unpublished (1988) U of Kiel, Olshausenstr., 2800 Iel. STANDARD simple automatic REFERENCE 2 (bases 1 to 2867) AUTHORS Spiegl,H., Ludwig,W., Schleifer,K.M. and Stackenbrandt,E.U. JOURNAL Unpublished (1988) STANDARD simple automatic FEATURES Location/Qualifiers rRNA 1..2867 /note="23S rRNA" BASE COUNT 839 a 546 c 878 g 604 t ORIGIN Phylo:Eubacteria,Purple,gamma,3 BASE COUNT 839 a 546 c 878 g 604 t 1892 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGUGAA- --UAAGCGUA CAUGGUGGAU 121 G|CCUAGG|C AAUAAG|AG| GC-GAAGAAG GA|CGUG(CU AA-CC-)U|- GCG-AAAAGU 181 CAUGAU|-GA GCU(G-GU-A AGA-)AGCGC AAAAGU-CAU GGAUG|UCCG AAUGGG(GGA 241 A)CCC|AGCA UCA-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----GUUA)- UGAUGUU-AU CA-------( 481 GA-gcaa--- UC)------- -U-G--AGG- C-gaAC|CG- GGAGAAGU|G A(AACA)UCU 541 CAGUA-CCCC GAGGAAAAGA AAUC(-AACC --)GAGAU|U UC-CUAAGUA GU(GGCGA)A 601 CGA-ACG-GG AA-GCA-GCC CA-------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------a aa--guugua uaagucau-a guuGAAu-ua u-c(u-ggaa a)g-guaaac 781 |g(aaa)gaG AG(UGAUAGU )CUCGU-Aga c-gaaguggc uua-uaugau ---gaug--- 841 ---------- ---------- -----aaaGA GUAGGACGGA A(CACGUG-G AA)UUCUGUC 901 UGAAGAU-AG G-GG(GACCA U)CC-UCU-A AGGCUAA--- -AUACUACUU AUUGACCGAU 961 AGUG-AAC-A AGUACC(GUG A)-GGGA-AA GGCGAAAA-G AACCCC(UGU UA-)GGGGA- 1021 -GUGAAA-UA GAAACUGAAA CCGU-GUACG UACAA-G-CA GUGGGAGCAC ---------- 1081 --------(- ---uacg--) ---------- -------GUG UGACUGCGUA CCU(UUU-GU 1141 AU|A)AUCG| -GUCAGCGAG UUAC-UUUC- AGUGGC-GAG GUUAACC--( -GCAUA)--G 1201 G-GGAGCCGA AGG(GAAAA) CCGAGUUU(U AA-CU)GAGC Gc-------- ---------- 1261 ---------- --------ga G-UCGCUGGG AGUA-GACCC GAAAC-CUG- AUGA-UCUAG 1321 UCAUGGG|CA GGAUGAAGGC AAGG(UAAC) AC-UUGCUGG AGGGCCGAAC C-CACUAAC( 1381 -GUUGCAAA) GUUAG|GGG- AUGAC-CUGU GACUAGGGGU (-GAAAG)GC CAAUCAAAUC 1441 AGGUGAUAUC UGGUUCUCCC CGAAAGCUAU (-UUAG)GUA GCGC|-CUCA AAUGA---A| 1501 -AGU|UAUGG G|AGGUAG|A GC-ACUGU-U UCGAUAA-GG |-GGUCC(AU CCC)GGAUUG 1561 CCGAGUCGAU -GCAAACUCC GAA-UA-|CU C-A-U-AAGG AC------U| AUU-UGGGAG 1621 ACAGAC--AG C-GGGU(GCU AAG)GUCCGU -UGUC-GAGA GGG(-AAAGA G-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCG- AAGUU-AAGG -U-UAA-GUG ------GGAA ACGAUGUG-G 1741 GAAGGCAUA- GACAGCUAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (AAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUA GU-----CGA GU-CGG-CC- -UGC|GCGGA AGAU-GUAA- 1861 CGGGGCUAAA ACCUU-A|C| ACCGAAGCU| GCGG|aauua a------(ga aa-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ---uuaauu- GG-UAGGGGA G|-----CGU 2221 U-CUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCUG-U 2341 GAAGGGC-A- A-CU(-GGAA -)GGU--UGA CUGG|AGCUA U-CAGAAGUG CGAAUGC-UG 2401 AC|GUG-AGU A--ACGAUAA UAUAUG(UGA AAAA)CAUAU A|CGCC-GAA AGACCAAGGG 2461 UUUCUG-UCC AACG-(UUAA U)CG|G-GGC AGAGUGAGU| CGG|U-ACCU AAuguAAGGC 2521 U(GAAA)-A- GCGU-AgacG AUGG-AUAUU CGG-(UU-AA UAUU)C-CGA A|AC|uagg- 2581 ca-uug-au- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------ugug a------gga a--gga-cgg agaaggcua- gugc-u-|gc u-uac(ug-- 2761 uuggaa-ua- --)gu-aagu -|ggaa---- ---------- ---ggcg-gu aguu------ 2821 -ccggug-ug uacg(aa-ga aa-)ag|g-- cacgcugaa- ---------- ggac-gagag 2881 ccg-a-ga|g ga-|------ ------uuac a(cuacg-g) uguaa----- ------gaag 2941 --agcau-ga ugcc-agg-| cuuccaggaa a-aguucc-g uacacguu-- ------aa-u 3001 -uaaug--cu g|G|CCGUAC CCGAAACC(G ACACA)GG|U GG-UCGGGU- A-(GAGAA)U 3061 ACCAAGGCGC ||UUGAGAGA ACUCGGGUG- ---------- ----AAGGAA CUAGGCAAAA 3121 UAGUACCGUA AC(-UUAG)G GAGAAGGUAU |GCUGAggag -auuga---- ------gcau 3181 c(-cgcgc)g augu------ ---aagguu- gaaUCAG-U| G(ACA)GCAA AGAGGUG-GC 3241 UG|GGACU-- ---GU(UUAA CAAAA)ACAC AGCACACUG| CGAACAC(GG AA------)G 3301 UGGAAGU-AU AGUGUGUGA- CACCUGCCCG GU|GCCG-GA A-GGUUAAAU GAUGAAGUCA 3361 UC-------- (G-CAA)--- --------GA GA-AGCUUCU GAUUGAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(C 3481 AAGU)UCCGA C|CUGCACGA AUGGUGUAAC CA-UGGCCAC GCUGUCUCCA CCCGAGACUC 3541 A|GUGAAAUC |GAAAUCG-C UG(UGAAGAU G)CAGUGUAC CCGCGGC-UA GACGGAAAGA 3601 CCCCGUGA|A CCU-UUACUA U|AGCUUGAC ACU|GAACAU UGAGUCUGUC UGUGUAGGAU 3661 AGAUGGGAGA CAGAGAAG-- CGAGUAC(GC CA)GUAUUCG UGGAGUCGGC -cGGUGAAAU 3721 ACCAUU|CUG G-GAGACUUG GUG-UUCUAA -CCAAAU--- -AUU-(---A -ACA)--GAU 3781 AAUGG-GACA GUGUCUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|UCCUC C(UAA-AGGG 3841 UAAC)GGAGG A|G|C|ACGA AGGUUGGC|U AAUCACGG(U CGGACA)UCG UGAGGU-UA| 3901 GU(G|UAAUG )GUAGAAGCC AGCUUAACUG CGAGAC(AGA CGA)GUCGAG CAGGUGC(GA 3961 AA)GC-AGGU |CAUAGUGAU CCGGUGGUUC UG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|UGGG|G AUAACAG|GC UGA--UACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GAAG 4141 U---U)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGUGGUAC G-CGAGCUGG 4201 GUUCA-AAAC |GUC(GUGA) -GACAGUU-U GGU-CCCUAU -CU|GCCGUG G-G|CG-CUG 4261 GAUGAUU|GA -|AGGGAGU- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGA|ACG AACCGCUGGU GUAUGGGU|U GUCAU(GC-C A-)AUGGCA- CUGCCCGGUA 4381 GCU-ACGUUC GGAAUCGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAGCG AGCCUU|AAG 4441 AUAAGUCAUC C|CG|--AAC U(-AUA--)A GUU---UGU- AAGG|-GA|C GUUG-(GAGA 4501 CU-A)CGACG -UUGAUAG|G CUGG|GAGUG -GAAGUGCA- -(GUGA-)-- UGCAU|GU-A 4561 GCGG|A|CCA GUACUAAUG- ACCCGAGAG| GCUUAA-CCA U-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS A.hydrop.1 4759 bp RNA RNA 11-JAN-191 DEFINITION Aeromonas hydrophila str. Purple, gamma. ACCESSION No information KEYWORDS No information. SOURCE Aeromonas hydrophila str. Purple, gamma. ORGANISM Aeromonas hydrophila. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X67946 ID AH23SRRN standard; DNA; PRO; 2743 BP. XX AC X67946; XX DT 16-FEB-1993 (Rel. 34, Created) DT 17-FEB-1993 (Rel. 34, Last updated, Version 3) XX DE A.hydrophila rrn gene for 23S rRNA XX KW 23S ribosomal RNA; ribosomal RNA. XX OS Aeromonas hydrophila OC Prokaryota; Bacteria; Gracilicutes; Scotobacteria; OC Facultatively anaerobic rods; Vibrionaceae. XX RN [1] RP 1-2743 RA East A.K.; RT ; RL Submitted (31-JUL-1992) on tape to the EMBL Data Library by: RL A.K. East, AFRC Inst. of Food Research, Reading Laboratory, RL Microbiology Dept., Earley Gate, Whiteknights Rd., Reading RG6 2EF, RL UK XX RN [2] RP 1-2743 RA East A.K., Collins M.D.; RT "Molecular characterization of DNA encoding 23S rRNA and 16S-23S RT rRNA intergenic spacer regions of aeromonas hydrophila"; RL FEMS Microbiol. Lett. 106:129-134(1993). XX CC *source: strain=ATCC 7966; CC *source: clone=pAEA3; XX FH Key Location/Qualifiers FH FT rRNA 1..2743 FT /product="23S ribosomal RNA" XX SQ Sequence 2743 BP; 725 A; 604 C; 856 G; 558 T; 0 other; BASE COUNT 725 a 604 c 856 g 558 t 2016 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGUGGC- --UAAGCGUA CAUGGUGGAU 121 G|CCUUGG|C AGUCAG|AG| GC-GAUGAAG GA|CGUA(CU AA-CC-)U|- GCG-AUAAGC 181 CGUGAG|-CA GUC(G-GU-A AGA-)GACAU UACGAC-CAC GGAUU|UUCG AA-AGG(GGA 241 A)UCC|Acuu agc-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----auaa)- gc-agg--ua cg-cuaCGU( 481 GA-AUACA-- UA)GCG---- -a-G--AGG- C--aAG|CG- GGAGAACU|G A(AACA)UCU 541 AAGU---UUU GAG--AAAGA A-UC(-accg a-)GAu--|u cc--ucAGUA GC(GGCGA)G 601 CGAuACG--g gauUAA-GCC Uu-------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ----agcauc uugga-gu-a gugGA-c-gu u-c(u----- g)a-agcggc 781 |g(aua)caG GG(UGAUAGC )CCCGU-Aca cgaaaacaac cuu-gaugu- -----gaaau 841 c--------- ---------- --------GA GUAG--CGGG A(CACGUG-A CA)UCCUGUC 901 UGAAUAUacG G-GG(GACCA U)CC-UCC-A AGGCUAA--- -AUACUCCUG ACUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)CGGGA-AA GGCGAAAA-G AACCCC(UGU GA-)GGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCGU-GUACG UACAA-G-CA GUGGGAGCCC ---------- 1081 --------(- ---uucg--) ---------- -------GGG UGACUGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAC-AUUU- UGUAGC-GAG GUUAACC--( -GUAUA)--G 1201 G-GGAGCCGU AGG(GAAA-) CCGAGUCU(U AA-CU)GGGC GU-------- ---------- 1261 ---------- ------c-ua G-UUGCAAGG UGUA-GACCC GAAAC-CGG- GUGA-UCUAG 1321 CCAUGGG|CA GGUUGAAGGU UGAG(UAAC) AU-CAACUGG AGGACCGAAC C-CACUAAC( 1381 -GUUGCAAG) GUUAG|GGG- AUGAC-CUGU GGCUGGGGGU (-GAAAG)GC CAAUCAAACU 1441 CGGAGAUAGC UGGUUCUCCC CGAAAGCUAU (UUUAG)GUA GCGC|-CUCG GACGa---A| 1501 -UAC|UACUG G|GGGUAG|A GC-ACUGU-U UGGGCUA-GG |-GGGUC(AU CCC)GACUUA 1561 CCAACCCCAU -GCAAACUCC GAA-UA-|CC A-G-U-A--A GUAC----U| AUC-CGGGAG 1621 ACACAC--GG C-GGGU(GCU AAC)GUCCGU -CGUG-AAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCGGCUAA G-GU|CCCA- AAGUU-CUGG -U-UAA-GUG ------GGAA ACGAUGUG-G 1741 GAAGGCUCA- GACAGCUAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUA GU-----CGA GU-CGG-CC- -UGC|GCGGA AGAU-GUAA- 1861 CGGGGCUCAA ACCAG-G|C| ACCGAAGCC| GCGG|auuca cgc----(ua a--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -gcgugagu- GG-UAGGGGA G|-----CGU 2221 U-CUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-UCUG-C 2341 GAAGGUG-U- G-UC(-GAGA -)GGC--AUG CUGG|AGAUA U-CAGAAGUG CGAAUGC-UG 2401 AC|GUA-AGU A--ACGAUAA AGGGGG(UGA AAAG)CCUCC U|CGCC-GGA AGACCAAGGG 2461 UUCCUG-UCC AACG-(UUAA U)CG|G-GGC AGGGUGAGU| CGA|C-CCCU AAGGCGAGGC 2521 C(GAAA)-G- G--U-AGUCG AUGG-GAAGC AGG-(UU-AA UAUU)C-CUG C|AC|ga-c- 2581 uu-gua-auu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga u------ggg g--gga-cgg agaaggcua- ggug-g-|gc c-agg(cg-- 2761 acgg-u-ugu --)cc-uggu -|gaaa---- ---------- ---gugc-gu aggu------ 2821 -gguguu-uc uagg(ca-aa -u-)cc|g-- gagacacaa- ---------- cacu-gagac 2881 acg-a-ga|c gaa|------ ------cgca c(-uacg--) gugcg----- ------gaag 2941 --ccauu-ga ugcc-cug-| cuuccaggaa a-agccuc-u aagcuuca-- ------ga-u 3001 -uacaa--gu c|A|UCGUAC CCCAAACC(G ACACA)GG|U GG-UCGGGU- A-(GAGAA)U 3061 ACCAAGGCGC ||UUGAGAGA ACUCGGGUGa agggaacuaa agagAAGGAA CUAGGCAAAA 3121 UAGAACCGUA AC(-UUCG)G GAGAAGGUUC |GCUCUUga- -cag-ug--- -----aaguc 3181 c(-cuugc)g gaug------ ---gagcag- uuGGGAG-U| C(GCA)GUGA CCAGAUG-GC 3241 UG|GGACU-- ---GU(UUAU CAAAA)ACAC AGCACUCUG| CAAACAC(GA AA------)G 3301 UGGACGU-AU AGGGUGUGA- CACCUGCCCG GU|GCCG-GA A-GGUUAAUU GAUGGGGUUA 3361 GC-------- (G-CAA)--- --------GC GA-AGCUCUU GAUCGAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGUGUAAC CA-UGGCCAU GCUGUCUCCA CCCGAGACUC 3541 A|GUGAAAUC |GAAUUCG-C CG(UGAAGAU G)CGGUGUAC CCGCGGC-UA GACGGAAAGA 3601 CCCCGUGA|A CCU-UUACUA C|AGCUUGGC ACU|GAACAU UGAACCUACA UGUGUAGGAU 3661 AGGUGGGAGG CUUUGAAGgg CGUGAAC(GC CA)GUUUCGC UGGAGCCGUC -C-UUGAAAU 3721 ACCACC|CUU G-UAUGUUUG AUG-UUCUAA -CGCAGG--- -CCCG(--UG -AAU)CCGGG 3781 UcGCG-GACA GUGCCUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|UCCUC C(CAA-AGAG 3841 UAAC)GGAGG A|G|C|ACGA AGGUUGGC|U AAUCCUGG(U CGGACA)UCA GGAGGU-UA| 3901 GU(G|CAAUG )GCAUAAGCC AGCUUAACUG CGAGAC(GGA CAG)GUCGAG CAGGUAC(GA 3961 AA)GU-AGGU |CAUAGUGAU CCGGUGGUUC UG(AAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UGA--UACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GAAG 4141 U---C)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGUGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|CG-UUG 4261 GAUGAUU|GA -|AGGGAGU- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGA|ACG AGCCUCUGGU GUUCGGGU|U GUCAC(GC-C A-)GUGGCA- CUGCCCGGUA 4381 GCU-AAGUUC GGAAUCGAUA ACCGCU(GAA AGCAUCUA)A GCGUGAAAnn nnnnnn|nnn 4441 nnnnnnnnnn n|nn|nnnnn n(-nnn--)n nnnnn-nnn- nnnn|-nn|n nnnn-(nnnn 4501 nn-n)nnnnn -nnnnnnn|n nnnn|nnnnn -nnnnnnnn- -(nnnn-)-- nnnnn|nn-n 4561 nnnn|n|nnn nnnnnnnnn- nnnnnnnnn| nnnnnn-nnn n-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS A.hydrop.2 4759 bp RNA RNA 03-JUL-1997 DEFINITION Aeromonas hydrophila.; 23S ribosomal RNA; 23S rRNA gene. ACCESSION X87281 KEYWORDS 23S ribosomal RNA; 23S rRNA gene. SOURCE Aeromonas hydrophila. ORGANISM Aeromonas hydrophila. REFERENCE 1 (bases 1 to 2895) AUTHORS Ludwig,W., Rossello-Mora,R., Aznar,R., Klugbauer,S., Spring,S ., Reetz,K., Beimfohr,C., Brockmann,E., Kirchhof,G., Dorn,S., Bachleitner,M., Klugbauer,N., Springer,N., Lane,D., Nietupsky ,R., Weizenegger,M. and Schleifer,K.H. TITLE Comparative sequence analysis of 23S rRNA from proteobacteria JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2895) AUTHORS Ludwig,W. TITLE Direct Submission JOURNAL Submitted (18-MAY-1995) W. Ludwig, Lehrstuhl fuer Mikrobiologie, Technische Universitaet Muenchen, Muenchen, FRG STANDARD No information REFERENCE 3 (bases 1 to 2895) AUTHORS Ludwig,W., Rossello-Mora,R., Aznar,R., Klugbauer,S., Spring,S., Reetz,K., Beimfohr,C., Brockmann,E., Kirchhof,G. , Dorn,S., Bachleitner,M., Klugbauer,N., Springer,N., Lane, D., Nietupsky,R., Weizenegger,M. and Schleifer,K.H. TITLE Comparative sequence analysis of 23S rRNA from proteobacteria JOURNAL Syst. Appl. Microbiol. 18, 164-188 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X87281 BASE COUNT 754 a 646 c 902 g 592 t 1865 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- -guuguauGG UUAAGUGAC- --UAAGCGUA CAUGGUGGAU 121 G|CCUUGG|C AGUCAG|AG| GC-GAUGAAG GA|CGUA(CU AA-CC-)U|- GCG-AUAAGC 181 CGUGAG|-CA GUC(G-GU-A AGA-)GACAU UACGACUCAC GGAUU|UCCG AAUGGG(GAA 241 A)CCC|ACUU AGC-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----AUAA)- GCUAGGU-AU CG-CUACGU( 481 GA-AUACA-- UA)GCG-UAG -C-G--AGG- C-gaAC|CG- GGAGAACU|G A(AACA)UCU 541 AAGUA-CCCC GAGGAAAAGA AAUC(-AACC --)GAGAU|U CC-CUCAGUA GC(GGCGA)G 601 CGA-ACG-GG GA-UUA-GCC CU-------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- uga-gcaucu uggaaguu-a gugGAAc-gg ucc(u-ggaa a)g-gccggc 781 |g(aua)caG GG(UGAUAGC )CCCGU-Aca c-gaaaacaa ccuugaugu- -----gaaau 841 c--------- ---------- --------GA GUAGGGCGGG A(CACGUG-A CA)UCCUGUC 901 UGAAUAU-GG G-GG(GACCA U)CC-UCC-A AGGCUAA--- -AUACUCCUG ACUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGCGAAAA-G AACCCC(UGU GA-)GGGGA- 1021 -GUGAAA-UA GNACCUGAAA CCGU-GUACG UACAA-G-CA GUGGGAGCCU --UC------ 1081 --------(- ---gggg--) ---------- ---------- UGACUGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAC-AUUU- UGUAGC-GAG GUUAACC--( -GUAUA)--G 1201 G-GGAGCCGU AGG(GAAA-) CCGAGUCU(U AA-CU)GGGC GU-------- ---------- 1261 ---------- ------c-ua G-UUGCAAGG UGUA-GACCC GAAAC-CGG- GUGA-UCUAG 1321 CCAUGGG|CA GGUUGAAGGU UGAG(UAAC) AU-CAACUGG AGGACCGAAC C-CACUAAC( 1381 -GUUGCAAA) GUUAG|GGG- AUGAC-CUGU GGCUGGGGGU (-GAAAG)GC CAAUCAAACU 1441 CGGAGAUAGC UGGUUCUCCC CGAAAGCUAU (-UUAG)GUA GCGC|-CUCG GACGA---A| 1501 -UAC|UACUG G|GGGUAG|A GC-ACUGU-U UGGGCUA-GG |-GGGUC(AU CCC)GACUUA 1561 CCAACCCCAU -GCAAACUCC GAA-UA-|CC A-G-U-A--A GUAC----U| AUC-CGGGAG 1621 ACACAC--GG C-GGGU(GCU AAC)GUCCGU -CGUG-AAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCGGCUAA G-GU|CCCA- AAGUU-CUGG -U-UAA-GUG ------GGAA ACGAUGUG-G 1741 GAAGGCUCA- GACAGCUAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUA GU-----CGA GU-CGG-CC- -UGC|GCGGA AGAU-GUAA- 1861 CGGGGCUCAA ACCAG-G|C| ACCGAAGCU| GCGG|auuca cgc----(ua a--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -gcgugagu- GG-UAGGGGA G|-----CGU 2221 U-CUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-UCUG-C 2341 GAAGGUG-U- A-UC(-GAGA -)GGU--AUG CUGG|AGAUA U-CAGAAGUG CGAAUGC-UG 2401 AC|GUA-AGU A--ACGAUAA AGGGGG(UGA AAAG)CCUCC U|CGCC-GGA AGACCAAGGG 2461 UUCCUG-UCC AACG-(UUAA U)CG|G-GGC AGGGUGAGU| CGA|C-CCCU AAGGUGAGGC 2521 C(GAAA)-G- GCGU-AGUCG AUGG-GAAGC AGG-(UU-AA UAUU)C-CUG C|AC|ga-c- 2581 uu-gua-auu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga u------ggg g--gga-cgg agaaggcua- ggug-g-|gc c-agg(cg-- 2761 acgg-u-ugu --)cc-uggu -|gaaa---- ---------- ---gugc-gu agg------- 2821 ugguguu-uc uagg(ca-aa -u-)cc|g-- gagacacaa- ---------- cacu-gagac 2881 acg-a-ga|c gaa|------ ------cgca c(-uacg--) gugcg----- ------gaag 2941 --ccauu-ga ugcc-cug-| cuuccaggaa a-agccuc-u aagcuuca-- ------ga-u 3001 -uacaa--gu c|A|UCGUAC CCCAAACC(G ACACA)GG|U GG-UCGGGU- A-(GAGAA)U 3061 ACCAAGGCGC ||UUGAGAGA ACUCGGGUG- ---------- ----AAGGAA CUAGGCAAAA 3121 UAGAACCGUA AC(-UUCG)G GAGAAGGUUC |GCUCUUga- -ugg-ug--- -----aaguc 3181 c(-cuugc)g gaug------ ---gagcug- ucGGGAG-U| C(GCA)GUGA CCAGAUG-GC 3241 UG|GGACU-- ---GU(UUAU CAAAA)ACAC AGCACUCUG| CAAACAC(GA AA------)G 3301 UGGACGU-AU AGGGUGUGA- CACCUGCCCG GU|GCCG-GA A-GGUUAAUU GAUGGGGUUA 3361 GC-------- (G-CAA)--- --------GC GA-AGCUCUU GAUCGAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGUGUAAC CA-UGGCCAU GCUGUCUCCA CCCGAGACUC 3541 A|GUGAAAUC |GAAUUCG-C CG(UGAAGAU G)CGGUGUAC CCGCGGC-UA GACGGAAAGA 3601 CCCCGUGA|A CCU-UUACUA C|AGCUUGGC ACU|GAACAU UGAACCUACA UGUGUAGGAU 3661 AGGUGGGAGG CUUUGAAG-- GCGUGAC(GC CA)GUUGCGC UGGAGCCGUC -C-UUGAAAU 3721 ACCACC|CUU G-UAUGUUUG AUG-UUCUAA -CGCAGG--- -GCCC(-UGA -AUC)-GGGC 3781 UCGCG-GACA GUGCCUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|UCCUC C(CAA-AGAG 3841 UAAC)GGAGG A|G|C|ACGA AGGUUGGC|U AAUCCUGG(U CGGACA)UCA GGAGGU-UA| 3901 GU(G|CAAUG )GCAUAAGCC AGCUUAACUG CGAGAC(GGA CAG)GUCGAG CAGGUAC(GA 3961 AA)GU-AGGU |CAUAGUGAU CCGGUGGUUC UG(AAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UGA--UACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GAAG 4141 U---C)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGUGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|CG-UUG 4261 GAUGAUU|GA -|AGGGAGU- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGA|ACG AACCUCUGGU GUUCGGGU|U GUCAC(GC-C A-)GUGGCA- CUGCCCGGUA 4381 GCU-AAGUUC GGCCUCGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAGCG AGCCCU|GAG 4441 AUGAGUCAUC C|CU|GACCC C(-UUG--)A GGGUC-CUA- AAGG|-GC|C GUUG-(GAGA 4501 CC-A)CAACG -UUGAUAG|G UGGG|GUGUG -UAAGCGUA- -(GCGA-)-- UACGU|UG-A 4561 GCUA|A|CCC AUACUAAUU- ACCCGUGAG| GCUUAA-CCA U-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS S.typhi 4759 bp RNA RNA 30-MAY-1996 DEFINITION Salmonella typhi.. ACCESSION No information KEYWORDS No information. SOURCE Salmonella typhi. ORGANISM Salmonella typhi. REFERENCE 1 (bases 1 to 2895) AUTHORS Zhu,Q., Lim,C.K. and Chan,Y.N. TITLE Detection of Salmonella typhi by polymerase chain reaction JOURNAL J. Appl. Bacteriol. 80 (3), 244-251 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U04734 LOCUS STU04734 2326 bp DNA BCT 30-MAY-1996 DEFINITION Salmonella typhi Rawlings 5S ribosomal RNA gene, complete sequence and 23S ribosomal RNA gene, partial sequence. ACCESSION U04734 NID g1335722 KEYWORDS . SOURCE Salmonella typhi. ORGANISM Salmonella typhi Eubacteria; Proteobacteria; gamma subdivision; Enterobacteriaceae; Salmonella. REFERENCE 1 (bases 1 to 2326) AUTHORS Zhu,Q., Lim,C.K. and Chan,Y.N. TITLE Detection of Salmonella typhi by polymerase chain reaction JOURNAL J. Appl. Bacteriol. 80 (3), 244-251 (1996) MEDLINE 97005372 REFERENCE 2 (bases 1 to 2326) AUTHORS Lim,C.-K. TITLE Direct Submission JOURNAL Submitted (27-DEC-1993) Dr. Chor-Kiang Lim, Dept. of Microbiology, National University of Singapore, Faculty of Medicine, Singapore 0511 FEATURES Location/Qualifiers source 1..2326 /organism="Salmonella typhi" /strain="Rawlings" /db_xref="taxon:601" rRNA 50..165 /product="5S ribosomal RNA" misc_feature 166..242 /note="23S to 5S spacer" rRNA 243..>2326 /product="23S ribosomal RNA" BASE COUNT 487 a 721 c 521 g 597 t BASE COUNT 520 a 463 c 647 g 428 t 2701 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 1141 ~~|~)~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ 1201 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 1381 ~~~~~~~~~) ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|~~~~~ ~GAAU---U| 1501 -CAU|CUCCG G|GGGUAG|A GC-ACUGU-U UCGGCUA-GG |-GGGCC(AU CCC)GGCUUA 1561 CCAACCCGAU -GCAAACUGC GAA-UA-|CC G-G-A-G--A AUGU---UA| UCA-CGGGAG 1621 ACACAC--GG C-GGGU(GCU AAU)GUCCGU -CGUG-AAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAGUC-AUGG -U-UAA-GUG ------GGAA ACGAUGUG-G 1741 GAAGGCCCA- GACAGCCAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG GU-----CGA GU-CGG-CC- -UGC|GCGGA AGAU-GUAA- 1861 CGGGGCU-AA ACCAU-G|C| ACCGAAGCU| GCGG|cagcg acac---(cg u--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- guguuguug- GG-UAGGGGA G|-----CGU 2221 U-CUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCUG-U 2341 GAAGGUG-U- G-CU(-GUGA -)GGC--AUG CUGG|AGGUA U-CAGAAGUG CGAAUGC-UG 2401 AC|AUA-AGU A--ACGAUAA AGCGGG(UGA AAAG)CCCGC U|CGCC-GGA AGACCAAGGG 2461 UUCCUG-UCC AACG-(UUAA U)CG|G-GGC AGGGUGAGU| CGA|C-CCCU AAGGCGAGGC 2521 C(GAAA)-G- GCGU-AGUCG AUGG-GAAAC GGG-(UU-AA UAUU)C-CCG U|AC|uu-g- 2581 gu-guu-acu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga a------ggg g--gga-cgg agaaggcua- uguu-g-|gc c-ggg(cg-- 2761 acgg-u-ugu --)cc-cggu -|uuaa---- ---------- ---gcgu-gu aggu------ 2821 -augugu-uc cagg(ua-aa -u-)cc|g-- guucacuuua a--------- cacu-gaggc 2881 gug-acga|c ga-|------ ------ggca c(-uacg--) gugcu----- ------gaag 2941 --caaca-aa ugcc-cug-| cuuccaggaa a-agccuc-u aagcauca-- ------gg-u 3001 -aacau--ca a|A|UCGUAC CCCAAACC(G ACACA)GG|U GG-UCAGGU- A-(GAGAA)U 3061 ACCAAGGCGC ||UUGAGAGA ACUCGGGUG- ---------- ----AAGGAA CUAGGCAAAA 3121 UGGUGCCGUA AC(-UUCG)G GAGAAGGCAC |GCUGACacg -uaggug--- -----aagug 3181 a(-uuuac)u cacg------ ---gagcug- aaGUCAG-C| C(GAA)GAUA CCAGCUG-GC 3241 UG|CAACU-- ---GU(UUAU UAAAA)ACAC AGCACUGUG| CAAACAC(GA AA------)G 3301 UGGACGU-AU ACGGUGUGA- CGCCUGCCCG GU|GCCG-GA A-GGUUAAUU GAUGGGGUCA 3361 GC-------- (G-CAA)--- --------GC GA-AGCUCCU GAUCGAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAU GA-UGGCCAG GCUGUCUCCA CCCGAGACUC 3541 A|GUGAAAUU |GAACUCG-C UG(UGAAGAU G)CAGUGUAC CCGCGGC-AA GACGGAAAGA 3601 CCCCGUGA|A CCU-UUACUA U|AGCUUGAC ACU|GAACAU UGAGCCUUGA UGUGUAGGAU 3661 AGGUGGGAGG CUUUGAAG-- UGUGGAC(GC CA)GUCUGCA UGGAGCCGAC -C-UUGAAAU 3721 ACCACC|CUU U-AAUGUUUG AUG-UUCUAA -CGUGGA--- -CC-G(--UG -AUC)-CGGG 3781 UUGCG-GACA GUGUCUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|UCCUC C(UAA-AGAG 3841 UAAC)GGAGG A|G|C|ACGA AGGUUGGC|U AAUCCUGG(U CGGACA)UCA GGAGGU-UA| 3901 GU(G|CAAUG )-CAUAAGCC AGCUUGACUG CGACUG(UGA CGG)CGCGAG CAGGUGC(GA 3961 AA)GC-AGGU |CAUAGUGAU CCGGUGGUUC UG(AAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|CGGG|- AUAACAG|GC UGA--UACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GAAG 4141 U---A)-GGU CCCAAGGGU| AU-GC(UGUU C)GC-CAUUU AAAGUGGUAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|CG-CUG 4261 GAGAACU|GA -|GGGGGGC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG CAUCACUGGU GUUCGGGU|U GUCAU(GC-C A-)AUG-CA- CUGCCCGGUA 4381 GCU-AAAUGC GGAAGAGAUA AGUGCU(GAA AGCAUCUA)A GCACGAAACU UGCCCC|GAG 4441 AUGAGUUCUC C|CU|GAGAC U(-UUA--)G GUCUC-CUG- AAGG|-AA|C GUUG-(AAGA 4501 CG-A)CGACG -UUGAUAG|G CCGG|GUGUG -UAAGCGCA- -(GCGA-)-- UGCGU|UG-A 4561 GCUA|A|CCG GUACUAAUG- AACCGUGAG| GCUUAA-CCU U-------|- ---------- 4621 ---------- ---------- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS S.enteri.1 4759 bp RNA RNA 22-JUL-1998 DEFINITION Salmonella enterica.; . ACCESSION U77919 KEYWORDS . SOURCE Salmonella enterica. ORGANISM Salmonella enterica. REFERENCE 1 (bases 1 to 2908) AUTHORS Christensen,H., Nordentoft,S. and Olsen,J.E. TITLE sequences Phylogenetic relationships of Salmonella based on rRNA JOURNAL Int. J. Syst. Bacteriol. 48, 605-610 (1998) STANDARD No information REFERENCE 2 (bases 1 to 2908) AUTHORS Christensen,H. TITLE Direct Submission JOURNAL Submitted (12-NOV-1996) Veterinary Microbiology, Royal Veterinary and Agricultural University, Bulowsvej 13, Frederiksberg 1870, Denmark STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U77919 BASE COUNT 759 a 641 c 912 g 593 t 1854 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGCGAC- --UAAGCGUA CACGGUGGAU 121 G|CCCUGG|C AGUCAG|AG| GC-GAUGAAG GG|CGUG(CU AA-UC-)U|- GCG-AUAAGC 181 GCCGGU|-AA GGU(G-AU-A UGA-)ACCGU UAUAAC-CGG CGAUA|CCCG AAUGGG(GAA 241 A)CCC|AGUG UGA-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----CUCG)- UCACACU-AU CA-UUAACU( 481 GA-AUCCA-- UA)GGU-UAA -U-G--AGG- C-GAAC|CG- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCC GAGGAAAAGA AAUC(-AACC --)GAGAU|U CC-CCCAGUA GC(GGCGA)G 601 CGA-ACG-GG GA-GGA-GCC CA-------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----gagcc ugaaucagca uguguguu-a gugGAAg-cg u-c(u-ggaa a)g-gcgcgc 781 |g(aua)cAG GG(UGACAGC )CCCGU-Aca c-aaaagcgc aug-ugcug- ----ugagcu 841 c--------- ---------- -----gauGA GUAGGGCGGG A(CACGUG-G UA)UCCUGUC 901 UGAAUAU-GG G-GG(GACCA U)CC-UCC-A AGGCUAA--- -AUACUCCUG ACUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGCGAAAA-G AACCCC(GGC GA-)GGGGA- 1021 -GUGAAA-AA GAACCUGAAA CCGU-GUACG UACAA-G-CA GUGGGAGCAC --AG-g---- 1081 --------(- ---uuua--) ---------- ---cCU-GUG UGACUGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAU-AUUC- UGUAGC-AAG GUUAACC--( -GAAUA)--G 1201 G-GGAGCCGG AGG(GAAA-) CCGAGUCU(U AA-UU)GGGC GU-------- ---------- 1261 ---------- ------u-aa G-UUGCAGGG UAUA-GACCC GAAAC-CCG- GUGA-UCUAG 1321 CCAUGGG|CA GGUUGAAGGU UGGG(UAAC) AC-UAACUGG AGGACCGAAC C-GACUAAU( 1381 -GUUGAAAA) AUUAG|CGG- AUGAC-CUGU GGCUGGGGGU (-GAAAG)GC CAAUCAAACC 1441 GGGAGAUAGC UGGUUCUCCC CGAAAGCUAU (-UUAG)GUA GCGC|-CUCG UGAAU---U| 1501 -CAU|CUCCG G|GGGUAG|A GC-ACUGU-U UCGGCUA-GG |-GGGCC(AU CCC)GGCUUA 1561 CCAACCCGAU -GCAAACUGC GAA-UA-|CC G-G-A-G--A AUGU---UA| UCA-CGGGAG 1621 ACACAC--GG C-GGGU(GCU AAC)GUCCGU -CGUG-AAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAGUC-AUGG -U-UAA-GUG ------GGAA ACGAUGUG-G 1741 GAAGGCCCA- GACAGCCAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAA 1801 AGC(GUAAUA )GN|UCACUG NU-----CGA GU-CGG-CC- -UGC|GCGGA AGAU-GUAA- 1861 CGGGGCU-AA ACCAU-G|C| ACCGAAGCU| GCGG|cagcg acgc---(uu au-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- gcguuguug- GG-UAGGGGA G|-----CGU 2221 U-CUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCUG-U 2341 GAAGGUG-U- S-UC(-GUGA -)GGC--AUG CUGG|AGGUA U-CAGAAGUG CGAAUGC-UG 2401 AC|AUA-AGU A--ACGAUAA AGCGGG(UGA AAAG)CCCGC U|CGCC-GGA AGACCAAGGG 2461 UUCCUG-UCC AACG-(UUAA U)CG|G-GGC AGGGUGAGU| CGA|C-CCCU AAGGCGAGGC 2521 C(GAAA)-G- GCGU-AGUCG AUGG-GAAAC GGG-(UU-AA UAUU)C-CCG U|AC|uu-g- 2581 gu-guu-acu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga a------ggg g--gga-cgg agaaggcua- uguu-g-|gc c-ggg(cg-- 2761 acgg-u-ugu --)cc-cggu -|uuaa---- ---------- ---gcgu-gu aggu------ 2821 -gugugu-uc cagg(ua-aa -u-)cc|g-- guucacuuua a--------- cacu-gaggc 2881 gug-auga|c ga-|------ ------ggca c(-uacg--) gugcu----- ------gaag 2941 --uaaca-aa ugcc-cug-| cuuccaggaa a-agccuc-u aagcauca-- ------gg-u 3001 -aacau--ca a|A|UCGUAC CCCAAACC(G ACACA)GG|U GG-UCAGGU- A-(GAGAA)U 3061 ACCAAGGCGC ||UUGAGAGA ACUCGGGUG- ---------- ----AAGGAA CUAGGCAAAA 3121 UGGUGCCGUA AC(-UUCG)G GAGAAGGCAC |GCUGACacg -uaggug--- -----aagug 3181 a(-uuuac)u caug------ ---gagcug- aaGUCAG-U| C(GAA)GAUA CCAGCUG-GC 3241 UG|CAACU-- ---GU(UUAU UAAAA)ACAC AGCACUGUG| CAAACAC(GA AA------)G 3301 UGGACGU-AU ACGGUGUGA- CGCCUGCCCG GU|GCCG-GA A-GGUUAAUU GAUGGGGUCA 3361 GC-------- (G-CAA)--- --------GC GA-AGCUCCU GAUCGAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAU GA-UGGCCAG GCUGUCUCCA CCCGAGACUC 3541 A|GUGAAAUU |GAACUCG-C UG(UGAAGAU G)CAGUGUAC CCGCGGC-AA GACGGAAAGA 3601 CCCCGUGA|A CCU-UUACUA U|AGCUUGAC ACU|GAACAU UGAGCCUUGA UGUGUAGGAU 3661 AGGUGGGAGG CUUUGAAG-- UGUGGAC(GC CA)GUCUGCA UGGAGCCGAC -C-UUGAAAU 3721 ACCACC|CUU U-AAUGUUUG AUG-UUCUAA -CGUGGA--- -CCCG(--UA -AUC)-CGGG 3781 UUGCG-GACA GUGUCUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|UCCUC C(UAA-AGAG 3841 UAAC)GGAGG A|G|C|ACGA AGGUUGGC|U AAUCCUGG(U CGGACA)UCA GGAGGU-UA| 3901 GU(G|CAAUG )GCAUAAGCC AGCUUGACUG CGAGCG(UGA CGG)CGCGAG CAGGUGC(GA 3961 AA)GC-AGGU |CAUAGUGAU CCGGUGGUUC UG(AAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UGA--UACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GAAG 4141 U---A)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGUGGUAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|CG-CUG 4261 GAGAACU|GA -|GGGGGGC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG CAUCACUGGU GUUCGGGU|U GUCAU(GC-C A-)AUGGCA- CUGCCCGGUA 4381 GCU-AAAUGC GGAAGAGAUA AGUGCU(GAA AGCAUCUA)A GCACGAAACU UGCCCC|GAG 4441 AUGAGUUCUC C|CU|GAGAC U(-UUA--)A GUCUC-CUG- AAGG|-AA|C GUUG-(AAGA 4501 CG-A)CGACG -UUGAUAG|G CCGG|GUGUG -UAAGCGCA- -(GCGA-)-- UGCGU|UG-A 4561 GCUA|A|CCG GUACUAAUG- AACCGUGAG| GCUUAA-CCU U-------|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS S.enteri.2 4759 bp RNA RNA 22-JUL-1998 DEFINITION Salmonella enterica 1,4,[5],12,:i:1,2.; . ACCESSION U77920 KEYWORDS . SOURCE Salmonella enterica 1,4,[5],12,:i:1,2. ORGANISM Salmonella enterica 1,4,[5],12,:i:1,2. REFERENCE 1 (bases 1 to 2908) AUTHORS Christensen,H., Nordentoft,S. and Olsen,J.E. TITLE Phylogenetic relationships of Salmonella based on rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 48, 605-610 (1998) STANDARD No information REFERENCE 2 (bases 1 to 2908) AUTHORS Christensen,H. TITLE Direct Submission JOURNAL Submitted (12-NOV-1996) Veterinary Microbiology, Royal Veterinary and Agricultural University, Bulowsvej 13, Frederiksberg 1870, Denmark STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U77920 BASE COUNT 754 a 639 c 906 g 584 t 1876 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGCGAC- --UAAGCGUA CACGGUGGAU 121 G|CCCUGG|C AGUCAG|AG| GC-GAUGAAG GG|CGUG(CU AA-UC-)U|- GCG-AUAAGC 181 GCCGGU|-AA GGU(G-AU-A UGA-)ACCGU UAUAAC-CGG CGAUA|CCCG AAUGGG(GAA 241 A)CCC|AGUG UGA-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----UUCG)- UCACACU-AU CA-UUAACU( 481 GA-AUCCA-- UA)GGU-UAA -U-G--AGG- C-GAAC|CG- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCC GAGGAAAAGA AAUC(-AACC --)GAGAU|U CC-CCCAGUA GC(GGCGA)G 601 CGA-ACG-GG GA-GGA-GCC CA-------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----gagcc ugaaucagca uguguguu-a gugGAAg-cg u-c(u-ggaa a)g-gcgcgc 781 |g(aua)gAG GG(UGACAGC )CCCGU-Aca c-aaaagcgc aug-ugcug- ----ugagcu 841 c--------- ---------- -----gauGA GUAGGGCGGG A(CACGUG-G UA)UCCUGUC 901 UGAAUAU-GG G-GG(GACCA U)CC-UCC-A AGGCUAA--- -AUACUCCUG ACUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGCGAAAA-G AACCCC(GGC GA-)GGGGA- 1021 -GUGAAA-AA GAACCUGAAA CCGU-GUACG UACAA-G-CA GUGGGAGCAC --AG-g---- 1081 --------(- ---uuua--) ---------- ---cCU-GUG UGACUGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAU-AUUC- UGUAGC-AAG GUUAACC--( -GUAUA)--G 1201 G-GGAGCCGW AGG(GAAA-) CCGAGUCU(U AA-YY)GGGC GU-------- ---------- 1261 ---------- ------u-aa G-UUGCAGGG UAUA-GACCC GAAAC-CCG- GUGA-UCUAG 1321 CCAUGGG|CA GGUUGAAGGU UGGG(UAAC) AC-UAACUGG AGGACCGAAC C-GACUAAU( 1381 -GUUGAAAA) AUUAG|CGG- AUGAC-CUGU GGCUGGGGGU (-GAAAG)GC CAAUCAAACC 1441 GGGAGAUAGC UGGUUCUCCC CGAAAGCUAU (-UUAG)GUA GCGC|-CUCG UGAAU---U| 1501 -CAU|CUCCG G|GGGUAG|A GC-ACUGU-U UCGGCUA-GG |-GGGCC(AU CCC)GGCUUA 1561 CCAACCCGAU -GCAAACUGC GAA-UA-|CC G-G-A-G--A AUGU---UA| UCA-CGGGAG 1621 ACACAC--GG C-GGGU(GCU AAC)GUCCGU -CGUG-AAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAGUC-AUGG -U-UAA-GUG ------GGAA ACGAUGUG-G 1741 GAAGGCCCA- GACAGCCAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG RU-----CGA GU-CGG-CC- -UGC|GCGGA AGAU-GUAA- 1861 CGGGGCU-AA ACCAU-G|C| ACCGAAGCU| GCGG|cagcg nnnn---(nn nn-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- nnnnnnnnn- NN-NNGGGGA G|-----CGU 2221 U-CUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCUG-U 2341 GAAGGUG-U- G-UC(-GUGA -)GGC--AUG CUGG|AGGUA U-CAGAAGUG CGAAUGC-UG 2401 AC|AUA-AGU A--ACGAUAA AGCGGG(UGA AAAG)CCCGC U|CGCC-GGA AGACCAAGGG 2461 UUCCUG-UCC AACG-(UUAA U)CG|G-GGC AGGGUGAGU| CGA|C-CCCU AAGGCGAGGC 2521 C(GAAA)-G- GCGU-AGUCG AUGG-GAAAC GGG-(UU-AA UAUU)C-CCG U|AC|uu-g- 2581 gu-guu-acu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga a------ggg g--gga-cgg agaaggcua- uguu-g-|gc c-ggg(cg-- 2761 acgg-u-ugu --)cc-cggu -|uuaa---- ---------- ---gcgu-gu aggu------ 2821 -gugugu-uc cagg(ua-aa -u-)cc|g-- guucacuuua a--------- cacu-gaggc 2881 gug-acga|c ga-|------ ------ggca c(-uacg--) gugcu----- ------gaag 2941 --caaca-aa ugcc-cug-| cuuccaggaa a-agccuc-u aagcauca-- ------gg-u 3001 -aacau--ca a|A|UCGUAC CCCAAACC(G ACACA)GG|U GG-UCAGGU- A-(GAGAA)U 3061 ACCAAGGCGC ||UUGAGAGA ACUCGGGUG- ---------- ----AAGGAA CUAGGCAAAA 3121 UGGUGCCGUA AC(-UUCG)G GAGAAGGCAC |GCUGACacg -uaggug--- -----aagug 3181 a(-uuuac)u caug------ ---gagcug- aaGUCAG-U| C(GAA)GAUA CCAGCUG-GC 3241 UG|CAACU-- ---GU(UUAU UAAAA)ACAC AGCACUGUG| CAAACAC(GA AA------)G 3301 UGGACGU-AU ACGGUGUGA- CGCCUGCCCG GU|GCCG-GA A-GGUUAAUU GAUGGGGUCA 3361 GC-------- (G-CAA)--- --------GC GA-AGCUCCU GAUCGAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAU GA-UGGCCAG GCUGUCUCCA CCCGAGACUC 3541 A|GUGAAAUU |GAACUCG-C UG(UGAAGAU G)CAGUGUAC CCGCGGC-AA GACGGAAAGA 3601 CCCCGUGA|A CCU-UUACUA U|AGCUUGAC ACU|GAACAU UGAGCCUUGA UGUGUAGGAU 3661 AGGUGGGAGG CUUUGAAG-- UGUGGAC(GC CA)GUCUGCA UGGAGCCGAC -C-UUGAAAU 3721 ACCACC|CUU U-AAUGUUUG AUG-UUCUAA -CGUGGA--- -CCCG(--UA -AUC)-CGGG 3781 UUGCG-GACA GUGUCUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|UCCUC C(UAA-AGAG 3841 UAAC)GGAGG A|G|C|ACGA AGGUUGGC|U AAUCCUGG(U CGGACA)UCA GGAGGU-UA| 3901 GU(G|CAAUG )GCAUAAGCC AGCUUGACUG CGAGCG(UGA CGG)CGCGAG CAGGUGC(GA 3961 AA)GC-AGGU |CAUAGUGAU CCGGUGGUUC UG(AAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UGA--UACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GAAG 4141 U---A)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGUGGUAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|CG-CUG 4261 GAGAACU|GA -|GGGGGGC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG CAUCACUGGU GUUCGGGU|U GUCAU(GC-C A-)AUGGCA- CUGCCCGGUA 4381 GCU-AAAUGC GGAAGAGAUA AGUGCU(GAA AGCAUCUA)A GCACGAAACU UGCCCC|GAG 4441 AUGAGUUCUC C|CU|GAGAC U(-UUA--)A GUCUC-CUG- AAGG|-AA|C GUUG-(AAGA 4501 CG-A)CGACG -UUGAUAG|G CCGG|GUGUG -UAAGCGCA- -(GCGU-)-- UGCGU|UG-A 4561 GCUA|A|CCG GUACUAAUG- AACCGUGAG| GCUUAA-CCU U-------|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS S.enteri.3 4759 bp RNA RNA 22-JUL-1998 DEFINITION Salmonella enterica II 1,9,12:1,w:e,n,x.; . ACCESSION U77921 KEYWORDS . SOURCE Salmonella enterica II 1,9,12:1,w:e,n,x. ORGANISM Salmonella enterica II 1,9,12:1,w:e,n,x. REFERENCE 1 (bases 1 to 2906) AUTHORS Christensen,H., Nordentoft,S. and Olsen,J.E. TITLE sequences Phylogenetic relationships of Salmonella based on rRNA JOURNAL Int. J. Syst. Bacteriol. 48, 605-610 (1998) STANDARD No information REFERENCE 2 (bases 1 to 2906) AUTHORS Christensen,H. TITLE Direct Submission JOURNAL Submitted (12-NOV-1996) Veterinary Microbiology, Royal Veterinary and Agricultural University, Bulowsvej 13, Frederiksberg 1870, Denmark STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U77921 BASE COUNT 760 a 644 c 906 g 579 t 1870 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGCGAC- --CAAGSGUA CACGGUGGAU 121 G|CCCUGG|C AGUCAG|AG| GC-GAUGAAG GA|CGUG(CU AA-UC-)U|- GCG-AUAAGC 181 GCCGGU|-AA GGU(G-AU-A UGA-)ACCGU UAUAAC-CGG CGAUU|UCCG AAUGGG(GAA 241 A)CCC|AGUG UGA-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----UUCG)- UCACACU-AU CA-UUAACU( 481 GA-AUCCA-- UA)GGU-UAA -U-G--AGG- C-GAAC|CG- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCC GAGGAAAAGA AAUC(-AACC --)GAGAU|U CC-CCCAGUA GC(GGCGA)G 601 CGA-ACG-GG GA-GGA-GCC CA-------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----gaguc ugaaucagca uguguguu-a gugGAAg-cg u-c(u-ggaa a)g-gcgcgc 781 |g(aua)cAG GG(UGACAGC )CCCGU-Aca c-aaaagcgc aca-uguug- ----ugagcu 841 c--------- ---------- -----gauGA GUAGGGCGGG A(CACGUG-G UA)UCCUGUC 901 UGAAUAU-GG G-GG(GACCA U)CC-UCC-A AGGCUAA--- -AUACUCCUG ACUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGCGAAAA-G AACCCC(GGC GA-)GGGGA- 1021 -GUGAAA-AA GAACCUGAAA CCGU-GUACG UACAA-G-CA GUGGGAGCAC --NN-g---- 1081 --------(- ---uuua--) ---------- ---ccu-GUG UGACUGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAU-AUUC- UGUAGC-AAG GUUAACC--( -GCAUA)--G 1201 G-GGAGCCGA AGG(AAAA-) CCGAGUCU(U AA-CC)GGGC GU-------- ---------- 1261 ---------- ------u-aa G-UUGCAGGG UAUA-GACCC GAAAC-CCG- GUGA-UCUAG 1321 CCAUGGG|CA GGUUGAAGGU UGGG(UAAC) AC-UAACUGG AGGACCGAAC C-GACUAAU( 1381 -GUUGAAAA) AUUAG|CGG- AUGAC-CUGU GGCUGGGGGU (-GAAAG)GC CAAUCAAACC 1441 GGGAGAUAGC UGGUUCUCCC CGAAAGCUAU (-UUAG)GUA GCGC|-CUCG UGAAC---U| 1501 -CAU|CUCCG G|GGGUAG|A GC-ACUGU-U UCGGCUA-GG |-GGGCC(AU CCC)GGCUUA 1561 CCAACCCGAU -GCAAACUGC GAA-UA-|CC G-G-A-G--A AUGU---UA| UCA-CGGGAG 1621 ACACAC--GG C-GGGU(GCU AAC)GUCCGU -CGUG-AAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAGUC-AUGG -U-UAA-GUG ------GGAA ACGAUGUG-G 1741 GAAGGCCCA- GACAGCCAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG VA-----CGA GU-CGG-CC- -UGC|GCGGA AGAU-GUAA- 1861 CGGGGCU-AA ACCAU-G|C| ACCGAAGCU| GCGG|cagcg aacg---(ua uc-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- acuunnnnn- NN-NNGGGGA G|-----CGU 2221 U-CUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCUG-U 2341 GAAGGUG-U- G-CU(-GUGA -)GGG--UUG CUGG|AGGUA U-CAGAAGUG CGAAUGC-UG 2401 AC|AUA-AGU A--ACGAUAA AGCGGG(UGA AAAG)CCCGC U|CGCC-GGA AGACCAAGGG 2461 UUCCUG-UCC AACG-(UUAA U)CG|G-GGC AGGGUGAGU| CGA|C-CCCU AAGGCGAGGC 2521 C(GAAA)-G- GCGU-AGUCG AUGG-GAAAC GGG-(UU-AA UAUU)C-CCG U|AC|uu-g- 2581 gu-guu-acu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga a------ggg g--gga-cgg agaaggcua- uguu-g-|gc c-ggg(cg-- 2761 acgg-u-ugu --)cc-cggu -|uuaa---- ---------- ---gcgu-gu aggc------ 2821 -ugacuu-uc cagg(ca-aa -u-)cc|g-- gagagucaa- ---------- ggcu-gaggc 2881 gug-acga|c ga-|------ ------ggca c(-uacg--) gugcu----- ------gaag 2941 --caaca-aa ugcc-cug-| cuuccaggaa a-agccuc-u aagcauca-- ------gg-u 3001 -aacau--ca a|A|UCGUAC CCCAAACC(G ACACA)GG|U GG-UCAGGU- A-(GAGAA)U 3061 ACCAAGGCGC ||UUGAGAGA ACUCGGGUG- ---------- ----AAGGAA CUAGGCAAAA 3121 UGGUGCCGUA AC(-UUCG)G GAGAAGGCAC |GCUGACacg -uaggug--- -----aagug 3181 g(-uuuac)c caug------ ---gagcug- aaGUCAG-U| C(GAA)GAUA CCAGCUG-GC 3241 UG|CAACU-- ---GU(UUAU UAAAA)ACAC AGCACUGUG| CAAACAC(GA AA------)G 3301 UGGACGU-AU ACGGUGUGA- CGCCUGCCCG GU|GCCG-GA A-GGUUAAUU GAUGGGGUCA 3361 GC-------- (G-CAA)--- --------GC GA-AGCUCCU GAUCGAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAU GA-UGGCCAG GCUGUCUCCA CCCGAGACUC 3541 A|GUGAAAUU |GAACUCG-C UG(AGAAGAU G)CAGUGUAC CCGCGGC-AA GACGGAAAGA 3601 CCCCGUGA|A CCU-UUACUA U|AGCUUGAC ACU|GAACAU UGAGCCUUGA UGUGUAGGAU 3661 AGGUGGGAGG CUUUGAAG-- CGUGGAC(GC CA)GUCUGCG UGGAGCCGAC -C-UUGAAAU 3721 ACCACC|CUU U-AAUGUUUG AUG-UUCUAA -CGUGGA--- -CCCG(--UG -AUC)-CGGG 3781 UUGCG-GACA GUGUCUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|UCCUC C(UAA-AGAG 3841 UAAC)GGAGG A|G|C|ACGA AGGUUGGC|U AAUCCUGG(U CGGACA)UCA GGAGGU-UA| 3901 GU(G|CAAUG )GCAUAAGCC AGCUUGACUG CGAGCG(UGA CGG)CGCGAG CAGGUGC(GA 3961 AA)GC-AGGU |CAUAGUGAU CCGGUGGUUC UG(AAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UGA--UACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GAAG 4141 U---A)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGUGGUAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|CG-CUG 4261 GAGAAUU|GA -|GGGGGGC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG CAUCACUGGU GUUCGGGU|U GUCAU(GC-C A-)AUGGCA- CUGCCCGGUA 4381 GCU-AAAUGC GGAAGAGAUA AGUGCU(GAA AGCAUCUA)A GCACGAAACU UGCCCC|GAG 4441 AUGAGUUCUC C|CU|GAGAC U(-AUA--)A GUCUC-CUG- AAGG|-AA|C GUUA-(AAGA 4501 CG-A)UGACG -UUGAUAG|G CCGG|GUGUG -UAAGCGCV- -(VVVU-)-- GGCGU|UG-A 4561 GCUA|A|CCG GUACUAAUG- AACCGUGAG| GCUUAA-CCU U-------|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS S.enteri.4 4759 bp RNA RNA 22-JUL-1998 DEFINITION Salmonella enterica IIIb 61:i:z.; . ACCESSION U77922 KEYWORDS . SOURCE Salmonella enterica IIIb 61:i:z. ORGANISM Salmonella enterica IIIb 61:i:z. REFERENCE 1 (bases 1 to 2906) AUTHORS Christensen,H., Nordentoft,S. and Olsen,J.E. TITLE sequences Phylogenetic relationships of Salmonella based on rRNA JOURNAL Int. J. Syst. Bacteriol. 48, 605-610 (1998) STANDARD No information REFERENCE 2 (bases 1 to 2906) AUTHORS Christensen,H. TITLE Direct Submission JOURNAL Submitted (12-NOV-1996) Veterinary Microbiology, Royal Veterinary and Agricultural University, Bulowsvej 13, Frederiksberg 1870, Denmark STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U77922 BASE COUNT 760 a 640 c 910 g 587 t 1862 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGCGAC- --UAAGCGUA CACGGUGGAU 121 G|CCCUGG|C AGUCAG|AG| GC-GAUGAAG GA|CGUG(CU AA-UC-)U|- GCG-AAAAGC 181 GCCGGU|-AA GGU(G-AU-A UGA-)ACCGU UAUAAC-CGG CGAUU|UCCG AAUGGG(GAA 241 A)CCC|AGUG UGA-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----CUCG)- UCACACU-AU CA-UUAACU( 481 GA-AUCCA-- UA)GGU-UAA -U-G--AGG- C-GAAC|CG- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCC GAGGAAAAGA AAUC(-AACC --)GAGAU|U CC-CCCAGUA GC(GGCGA)G 601 CGA-ACG-GG GA-GGA-GCC CA-------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----gagcc ugaaucagca uguguguu-a gugGAAg-cg u-c(u-ggaa a)g-gcgcgc 781 |g(aua)cAG GG(UGAGAGC )CCCGU-Aca c-aaaagcgc aya-ugyug- ----ugagcu 841 c--------- ---------- -----gauGA GUAGGGCGGG A(CACGUG-G UA)UCCUGUC 901 UGAAUAU-GG G-GG(GACCA U)CC-UCC-A AGGCUAA--- -AUACUCCUG ACUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGCGAAAA-G AACCCC(GGC GA-)GGGGA- 1021 -GUGAAA-CA GAACCUGAAA CCGU-GUACG UACAA-G-CA GUGGGAGCAC --AG-g---- 1081 --------(- ---uuua--) ---------- ---cCU-GUG UGACUGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAU-AUUC- UGUAGC-AAG GUUAACC--( -GCAUA)--G 1201 G-GGAGCCGA AGG(GAAA-) CCGAGUCU(U AA-UU)GGGC GU-------- ---------- 1261 ---------- ------u-aa G-UUGCAGGG UAUA-GACCC GAAAC-CCG- GUGA-UCUAG 1321 CCAUGGG|CA GGUUGAAGGU UGGG(UAAC) AC-UAACUGG AGGACCGAAC C-GACUAAU( 1381 -GUUGAAAA) AUUAG|CGG- AUGAC-CUGU GGCUGGGGGU (-GAAAG)GC CAAUCAAACC 1441 GGGAGAUAGC UGGUUCUCCC CGAAAGCUAU (-UUAG)GUA GCGC|-CUCG UGAAC---U| 1501 -CAU|CUCCG G|GGGUAG|A GC-ACUGU-U UCGGCUA-GG |-GGGCC(AU CCC)GGCUUA 1561 CCAACCCGAU -GCAAACUGC GAA-UA-|CC G-G-A-G--A AUGU---UA| UCA-CGGGAG 1621 ACACAC--GG C-GGGU(GCU AAC)GUCCGU -CGUG-AAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAGUC-AUGG -U-UAA-GUG ------GGAA ACGAUGUG-G 1741 GAAGGCCCA- GACAGCCAGG AUGUUGGC(U UVGACGCA)G CCAY-CAU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG GU-----CGA GU-CGG-CN- -NGC|GCGGA AGAU-GUAA- 1861 CGGGGCU-AA ACCAU-G|C| ACCGAAGCU| GCGG|cagcg acac---(uu ua-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- guguuguug- GG-UAGGGGA G|-----CGU 2221 U-CUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCGU-U 2341 GAAGGUG-U- C-CU(-GUGA -)GGG--GUG CUGG|AGGUA U-CAGAAGUG CGAAUGC-UG 2401 AC|AUA-AGU A--ACGAUAA AGCGGG(UGA AAAG)CCCGC U|CGCC-GGA AGACCAAGGG 2461 UUCCUG-UCC AACG-(UUAA U)CG|G-GGC AGGGUGAGU| CGA|C-CCCU AAGGCGAGGC 2521 C(GAAA)-G- GYGU-AGUCG AUGG-GAAAC AGG-(UU-AA UAUU)C-CCG U|AC|uu-g- 2581 gu-guu-acu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga a------ggg g--gga-cgg agaaggcua- uguu-g-|gc c-ggg(cg-- 2761 acgg-u-ugu --)cc-cggu -|uuaa---- ---------- ---gcgu-gu aggc------ 2821 -ugguuu-uc cagg(ca-aa -u-)cc|g-- gaaaaucaa- ---------- ggcu-gaggc 2881 gug-auga|c ga-|------ ------ggca c(-uacg--) gugcu----- ------gaag 2941 --caaca-aa ugcc-cug-| cuuccaggaa a-agccuc-u aagcauca-- ------gg-u 3001 -aacau--ca a|A|UCGUAC CCCAAACC(G ACACA)GG|U GG-UCAGGU- A-(GAGAA)U 3061 ACCAAGGCGC ||UUGAGAGA ACUCGGGUG- ---------- ----AAGGAA CUAGGCAAAA 3121 UGGUGCCGUA AC(-UUCG)G GAGAAGGCAC |GCUGACacg -uaggug--- -----aagug 3181 a(-uuuac)u caug------ ---gagcug- aaGUCAG-U| C(GAA)GAUA CCAGCUG-GC 3241 UG|CAACU-- ---GU(UUAU UAAAA)ACAC AGCACUGUG| CAAACAC(GA AA------)G 3301 UGGACGU-AU ACGGUGUGA- CGCCUGCCCG GU|GCCG-GA A-GGUUAAUU GAUGGGGUCA 3361 GC-------- (G-CAA)--- --------GC GA-AGCUCCU GAUCGAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAU GA-UGGCCAG GCUGUCUCCA CCCGAGACUC 3541 A|GUGAAAUU |GAACUCG-C UG(UGAAGAU G)CAGUGUAC CCGCGGC-AA GACGGAAAGA 3601 CCCCGUGA|A CCU-UUACUA U|AGCUUGAC ACU|GAACAU UGAGCCUUGA UGUGUAGGAU 3661 AGGUGGUAGG CUUUGAAG-- CGUGGAC(GC CA)GUCUGCG UGGAGCCGAC -C-UUGAAAU 3721 ACCACC|CUU U-AAUGUUUG AUG-UUCUAA -CGUGGA--- -CCCG(--UA -AUC)-CGGG 3781 UUGCG-GACA GUGUCUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|UCCUC C(UAA-AGAG 3841 UAAC)GGAGG A|G|C|ACGA AGGUUGGC|U AAUCCUGG(U CGGACA)UCA GGAGGU-UA| 3901 GU(G|CAAUG )GCAUAAGCC AGCUUGACUG CGAGCG(UGA CGG)CGCGAG CAGGUGC(GA 3961 AA)GC-AGGU |CAUAGUGAU CCGGUGGUUC UG(AAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UGA--UACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GAAG 4141 U---A)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGUGGUAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|CG-CUG 4261 GAAGACU|GA -|GGGGGGC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG CAUCACUGGU GUUCGGGU|U GUCAU(GC-C A-)AUGGCA- CUGCCCGGUA 4381 GCU-AAAUGC GGAAAAGAUA AGUGCU(GAA AGCAUCUA)A GCACGAAACU UGCCCC|GAG 4441 AUGAGUCUUC C|CU|GAGAC U(-UUG--)A GUCUC-CUG- AAGG|-AA|C GUUA-(AAGA 4501 CG-A)UGACG -UUGAUAG|G CCGG|GUGUG -UAAGCGCA- -(RRGU-)-- UGCGU|UG-A 4561 GCUA|A|CCG GUACUAAUG- AACCGUGAG| GCUUAA-CCU U-------|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS S.enteri.5 4759 bp RNA RNA 22-JUL-1998 DEFINITION Salmonella enterica IIIa.; . ACCESSION U77923 KEYWORDS . SOURCE Salmonella enterica IIIa. ORGANISM Salmonella enterica IIIa. REFERENCE 1 (bases 1 to 2906) AUTHORS Christensen,H., Nordentoft,S. and Olsen,J.E. TITLE sequences Phylogenetic relationships of Salmonella based on rRNA JOURNAL Int. J. Syst. Bacteriol. 48, 605-610 (1998) STANDARD No information REFERENCE 2 (bases 1 to 2906) AUTHORS Christensen,H. TITLE Direct Submission JOURNAL Submitted (12-NOV-1996) Veterinary Microbiology, Royal Veterinary and Agricultural University, Bulowsvej 13, Frederiksberg 1870, Denmark STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U77923 BASE COUNT 753 a 647 c 913 g 564 t 1882 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGCGAC- --CAAGCGUA CACGGUGGAU 121 G|CCCUGG|C AGUCAG|AG| GC-GAUGAAG GA|CGUG(CU AA-UC-)U|- GCG-AAAAGC 181 GCCGGU|-AA GGU(G-AU-A UGA-)ACCGU UAUAAC-CGG CGAUG|UCCG AAUGGG(GAA 241 A)CCC|AGUG UGA-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----CUCG)- UCACACU-AU CA-UUAACU( 481 GA-AUCCA-- UA)GGU-UAA -U-G--AGG- C-GAAC|CG- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCC GAGGAAAAGA AAUC(-AACC --)GAGAU|U CC-CCCAGUA GC(GGCGA)G 601 CGA-ACG-GG GA-GGA-GCC CA-------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----gagcc ugaaucagca uguguguu-a gugGAAg-cg u-c(u-ggaa a)g-gcgcgc 781 |g(aua)cAG GG(UGACAGC )CCCGU-Aca c-aaaagcgc aug-ugcug- ----ugagcu 841 c--------- ---------- -----gauGA GUAGGGCGGG A(CACGUG-G UA)UCCUGUC 901 UGAAUAU-GG G-GG(GACCA U)CC-UCC-A AGGCUAA--- -AUACUCCUG ACUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGCGAAAA-G AACCCC(GGC GA-)GGGGA- 1021 -GUGAAA-AA GAACCUGAAA CCGU-GUACG UACAA-G-CA GUGGGAGCnn --nn-n---- 1081 --------(- ---nnnn--) ---------- ---nnn-nnG UGACUGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAU-AUUC- UGUAGC-AAG GUUAACC--( -GUAUA)--G 1201 G-GGAGCCGg AGG(GAAA-) CCGAGUCU(U AA-CC)GGGC GU-------- ---------- 1261 ---------- ------u-aa G-UUGCAGGG UAUA-GACCC GAAAC-CCG- GUGA-UCUAG 1321 CCAUGGG|CA GGUUGAAGGU UGGG(UAAC) AC-UAACUGG AGGACCGAAC C-GACUAAU( 1381 -GUUGAAAA) AUUAG|CGG- AUGAC-CUGU GGCUGGGGGU (-GAAAG)GC CAAUCAAACC 1441 GGGAGAUAGC UGGUUCUCCC CGAAAGCUAU (-UUAG)GUA GCGC|-CUCG UGAAU---U| 1501 -CAU|CUCCG G|GGGUAG|A GC-ACUGU-U UCGGCCA-GG |-GGGCC(AU CCC)GGCUUA 1561 CCAACCCGAU -GCAAACUGC GAA-UA-|CC G-G-A-G--A AUGU---UA| UCA-CGGGAG 1621 ACACAC--GG C-GGGU(GCU AAC)GUCCGU -CGUG-AAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAGUC-AUGG -U-UAA-GUG ------GGAA ACGAUGUG-G 1741 GAAGGCCCA- GACAGCCAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG GU-----CGA GU-CGG-CC- -NNS|VCGGA AGAU-GUAA- 1861 CGGGGCU-AA ACCAU-G|C| ACCGAAGCU| GCGG|cagcg acac---(ug an-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- guguunnng- GG-UAGGGGA G|-----CGU 2221 U-CUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCKK-Y 2341 GAAGGUG-U- G-CU(-GUGA -)GGC--AUG CUGG|AGGUA U-SAGAAGUG CGAAUGC-UG 2401 AC|AUA-AGU A--ACGAUAA AGCGGG(UGA AAAG)CCCGC A|CGCC-GGA AGACCAAGGG 2461 UUCCUG-UCC AACG-(UUAA U)CG|G-GGC AGGGUGAGU| CGA|C-CCCU AAGGCGAGGC 2521 C(GAAA)-G- GCGU-AGUCG AUGG-GAAAC AGG-(UU-AA UAUU)C-CUG U|AC|cu-g- 2581 gu-guu-acu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga a------ggg g--gga-cgg agaaggcua- uguu-g-|gc c-ggg(cg-- 2761 acgg-u-ugu --)cc-cggu -|uuaa---- ---------- ---gcgu-gu aggc------ 2821 -ugguuu-uc cagg(ca-aa -u-)cc|g-- gaaaaucaa- ---------- ggcu-gaggc 2881 gug-ayga|c ga-|------ ------ggca c(-uacg--) gugcu----- ------gaag 2941 --caaca-aa ugcc-cug-| cuuccaggaa a-agccuc-u aagccuca-- ------gg-u 3001 -aacau--ca g|A|UCGUAC CCGAAACC(G ACACA)GG|U GG-UCAGGU- A-(GAGAA)U 3061 ACCAAGGCGC ||UUGAGAGA ACCCGGGUG- ---------- ----AAGGAA CUAGGCAAAA 3121 UGGUGCCGUA AC(-UUCG)G GAGAAGGCAC |GCUGACacg -uaggug--- -----aagcg 3181 g(-uuuac)c cgug------ ---gagcug- aaGUCAG-U| C(GAA)GAUA CCAGCUG-GC 3241 UG|CAACU-- ---GU(UUAU UAAAA)ACAC AGCACUGUG| CAAACAC(GA AA------)G 3301 UGGACGU-AU ACGGUGUGA- CGCCUGCCCG GU|GCCG-GA A-GGUUAAUU GAUGGGGUCA 3361 GC-------- (G-CAA)--- --------GC GA-AGCUCCU GAUCGAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAU GA-UGGCCAG GCUGUCUCCA CCCGGGACUC 3541 A|GUGAAAUU |GAACUCG-C UG(UGAAGAU G)CAGUGUAC CCGCGGC-AA GACGGAAAGA 3601 CCCCGUGA|A CCU-UUACUA U|AGCUUGAC ACU|GAACAC UGGUCCUUGA UGUGCAGGAU 3661 AGGUGGGAGG CUUUGAAG-- UGUGGAC(GC CA)GUCUGCA UGGAGCCGUC -C-UUGAAAU 3721 ACCACC|CUU U-AAUGGCUG GUG-UUCUAA -CGUAGA--- -CCCG(--UG -AAC)-CGGG 3781 UUGCG-GACA GUGUCUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|UCCUC C(UAA-AGCG 3841 UAAC)GGAGG A|G|C|ACGA AGGUUGGC|U AAUCCUGG(U CGGACA)UCA GGAGGU-UA| 3901 GU(G|CAAUG )GCAUAAGCC AGCUUGACUG CGAGCG(UGA CGG)CGCGAG CAGGUGC(GA 3961 AA)GC-AGGU |CAUAGUGAU CCGGUGGUUC UG(AAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UGA--UACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GAAG 4141 U---A)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGUGGUAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|CG-CUG 4261 GAGAACU|GA -|GGGGGGC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG CAUCACUGGU GUUCGGGU|U GUCAU(GC-C A-)AUGGCA- CUGCCCGGUA 4381 GCU-AAAUGC GGAAGAGAUA AGUGCU(GAA AGCAUCUA)A GCACGAAACU UGCCCC|GAG 4441 AUGAGUUCUC C|CU|GAGAC U(-ACA--)A GUCUC-CUG- AAGG|-AA|C GUUG-(AAGA 4501 CG-A)CGACG -UUGAUAG|G CCGG|GUGUG -UAAGCGCA- -(GRRU-)-- UGCGU|UG-A 4561 GCUA|A|CCG GUACUAAUG- AACCGUGAG| GCUUAA-CCU U-------|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS S.enteri.6 4759 bp RNA RNA 22-JUL-1998 DEFINITION Salmonella enterica IIIa 51:z4,z23:-.; . ACCESSION U77924 KEYWORDS . SOURCE Salmonella enterica IIIa 51:z4,z23:-. ORGANISM Salmonella enterica IIIa 51:z4,z23:-. REFERENCE 1 (bases 1 to 2906) AUTHORS Christensen,H., Nordentoft,S. and Olsen,J.E. TITLE Phylogenetic relationships of Salmonella based on rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 48, 605-610 (1998) STANDARD No information REFERENCE 2 (bases 1 to 2906) AUTHORS Christensen,H. TITLE Direct Submission JOURNAL Submitted (12-NOV-1996) Veterinary Microbiology, Royal Veterinary and Agricultural University, Bulowsvej 13, Frederiksberg 1870, Denmark STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U77924 BASE COUNT 753 a 650 c 917 g 568 t 1871 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGCGAC- --CAAGCGUA CACGGUGGAU 121 G|CCCUGG|C AGUCAG|AG| GC-GAUGAAG GA|CGUG(CU AA-UC-)U|- GCG-AAAAGC 181 GCCGGU|-AA GGU(G-AU-A UGA-)ACCGU UAUAAC-CGG CGAUG|UCCG AAUGGG(GAA 241 A)CCC|AGUG UGA-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----CUCG)- UCACACU-AU CA-UUAACU( 481 GA-AUCCA-- UA)GGU-UAA -U-G--AGG- C-GAAC|CG- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCC GAGGAAAAGA AAUC(-AACC --)GAGAU|U CC-CCCAGUA GC(GGCGA)G 601 CGA-ACG-GG GA-GGA-GCC CA-------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----gagcc ugaaucagca uguguguu-a gugGAAg-cg u-c(u-ggaa a)g-gcgcgc 781 |g(aua)cAG GG(UGACAGC )CCCGU-Aca c-aaaagcgc aug-ugcug- ----ugagcu 841 c--------- ---------- -----gauGA GUAGGGCGGG A(CACGUG-G UA)UCCUGUC 901 UGAAUAU-GG G-GG(GACCA U)CC-UCC-A AGGCUAA--- -AUACUCCUG ACUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGCGAAAA-G AACCCC(GGC GA-)GGGGA- 1021 -GUGAAA-CA GAACCUGAAA CCGU-GUACG UACAA-G-CA GUGGGAGCnn --nn-n---- 1081 --------(- ---nnnn--) ---------- ---nnn-nnG UGACUGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAU-AUUC- UGUAGC-AAG GUUAACC--( -GUAUA)--G 1201 G-GGAGCCGG AGG(GAAA-) CCGAGUCU(U AA-CC)GGGC GU-------- ---------- 1261 ---------- ------u-aa G-UUGCAGGG UAUA-GACCC GAAAC-CCG- GUGA-UCUAG 1321 CCAUGGG|CA GGUUGAAGGU UGGG(UAAC) AC-UAACUGG AGGACCGACC C-GACUAAU( 1381 -GUUGAAAA) AUUAG|CGG- AUGAC-CUGU GGCUGGGGGU (-GAAAG)GC CAAUCAAACC 1441 GGGAGAUAGC UGGUUCUCCC CGAAAGCUAU (-UUAG)GUA GCGC|-CUCG UGAAU---U| 1501 -CAU|CUCCG G|GGGUAG|A GC-ACUGU-U UCGGCCA-GG |-GGGCC(AU CCC)GGCUUA 1561 CCAACCCGAU -GCAAACUGC GAA-UA-|CC G-G-A-G--A AUGU---UA| UCA-CGGGAG 1621 ACACAC--GG C-GGGU(GCU AAC)GUCCGU -CGUG-AAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAGUC-AUGG -U-UAA-GUG ------GGAA ACGAUGUG-G 1741 GAAGGCCCA- GACAGCCAGG AUGUUGGC(U UAGAAGCA)G CCAB-YAU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG BU-----CGA GU-CGG-CC- -NGC|GCGGA AGAU-GUAA- 1861 CGGGGCU-AA ACCAU-G|C| ACCGAAGCU| GCGG|cagcg acac---(ug au-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- guguuguug- GG-UAGGGGA G|-----CGU 2221 U-CUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCUG-C 2341 GAAGGUG-U- G-CU(-GUGA -)GGG--UUG CUGG|AGGUA U-CAGAAGUG CGAAUGC-UG 2401 AC|AUA-AGU A--ACGAUAA AGCGGG(UGA AAAA)CCCGC A|CGCC-GGA AGACCAAGGG 2461 UUCCUG-UCC AACG-(UUAA U)CG|G-GGC AGGGUGAGU| CGA|C-CCCU AAGGCGAGGC 2521 C(GAAA)-G- GCGU-AGUCG AUGG-GAAAC AGG-(UU-AA UAUU)C-CUG U|AC|cu-g- 2581 gu-guu-acu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga a------ggg g--gga-cgg agaaggcua- uguu-g-|gc c-ggg(cg-- 2761 acgg-u-ugu --)cc-cggu -|uuaa---- ---------- ---gcgu-gu aggc------ 2821 -ugguuu-uc cagg(ca-aa -u-)cc|g-- gaaaaucaa- ---------- ggcu-gaggc 2881 gug-acga|c ga-|------ ------ggca c(-uacg--) gugcu----- ------gaag 2941 --caaca-aa ugcc-cug-| cuuccaggaa a-agccuc-u aagccuca-- ------gg-u 3001 -aacau--ca a|A|UCGUAC CCGAAACC(G ACACA)GG|U GG-UCAGGU- A-(GAGAA)U 3061 ACCAAGGCGC ||UUGAGAGA ACCCGGGUG- ---------- ----AAGGAA CUAGGCAAAA 3121 UGGUGCCGUA AC(-UUCG)G GAGAAGGCAC |GCUGACacg -uaggug--- -----aagcg 3181 g(-uuuac)c cgug------ ---gagcug- aaGUCAG-U| C(GAA)GAUA CCAGCUG-GC 3241 UG|CAACU-- ---GU(UUAU UAAAA)ACAC AGCACUGUG| CAAACAC(GA AA------)G 3301 UGGACGU-AU ACGGUGUGA- CGCCUGCCCG GU|GCCG-GA A-GGUUAAUU GAUGGGGUCA 3361 GC-------- (G-CAA)--- --------GC GA-AGCUCCU GAUCGAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAU GA-UGGCCAG GCUGUCUCCA CCCGGGACUC 3541 A|GUGAAAUU |GAACUCG-C UG(UGAAGAU G)CAGUGUAC CCGCGGC-AA GACGGAAAGA 3601 CCCCGUGA|A CCU-UUACUA U|AGCUUGAC ACU|GAACAC UGGUCCUUGA UGUGCAGGAU 3661 AGGUGGGAGG CUUUGAAG-- UGUGGAC(GC CA)GUCUGCA UGGAGCCGUC -C-UUGAAAU 3721 ACCACC|CUU U-AAUGGCUG GUG-UUCUAA -CGUAGA--- -CCCG(--UG -AAC)-CGGG 3781 UUGCG-GACA GUGUCUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|UCCUC C(UAA-AGCG 3841 UAAC)GGAGG A|G|C|ACGA AGGUUGGC|U AAUCCUGG(U CGGACA)UCA GGAGGU-UA| 3901 GU(G|CAAUG )GCAUAAGCC AGCUUGACUG CGAGCG(UGA CGG)CGCGAG CAGGUGC(GA 3961 AA)GC-AGGU |CAUAGUGAU CCGGUGGUUC UG(AAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UGA--UACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GAAG 4141 U---A)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGUGGUAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|CG-CUG 4261 GAGAAUU|GA -|GGGGGGC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG CAUCACUGGU GUUCGGGU|U GUCAU(GC-C A-)AUGGCA- CUGCCCGGUA 4381 GCU-AAAUGC GGAAGAGAUA AGUGCU(GAA AGCAUCUA)A GCACGAAACU UGCCCC|GAG 4441 AUGAGUUCUC C|CU|GAGAC U(-AUA--)A GGCUC-CUG- AAGG|-AA|C GUUG-(AAGA 4501 CG-A)CGACG -UUGAUAG|G CCGG|GUGUG -UAAGCGCA- -(GCGA-)-- UGCGU|UG-A 4561 GCUA|A|CCG GUACUAAUG- AACCGUGAG| GCUUAA-CCU U-------|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS S.enteri.7 4759 bp RNA RNA 22-JUL-1998 DEFINITION Salmonella enterica IV 43:z4,z23:-.; . ACCESSION U77926 KEYWORDS . SOURCE Salmonella enterica IV 43:z4,z23:-. ORGANISM Salmonella enterica IV 43:z4,z23:-. REFERENCE 1 (bases 1 to 2908) AUTHORS Christensen,H., Nordentoft,S. and Olsen,J.E. TITLE Phylogenetic relationships of Salmonella based on rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 48, 605-610 (1998) STANDARD No information REFERENCE 2 (bases 1 to 2908) AUTHORS Christensen,H. TITLE Direct Submission JOURNAL Submitted (12-NOV-1996) Veterinary Microbiology, Royal Veterinary and Agricultural University, Bulowsvej 13, Frederiksberg 1870, Denmark STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U77926 BASE COUNT 753 a 647 c 917 g 585 t 1857 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGCGAC- --CAAGCGUA CACGGUGGAU 121 G|CCYWGG|C AGUCAG|AG| GC-GAUGAAG GA|CGUG(CU AA-UC-)U|- GCG-AAAAGC 181 GCCGGU|-AA GGU(G-AU-A UGA-)ACCGU UAUAGC-CGG CGAUG|UCCG AAUGGG(GAA 241 A)CCC|AGUG UGA-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----CUCG)- UCACACU-AU CA-UUAACU( 481 GA-AUCCA-- UA)GGU-UAA -U-G--AGG- C-GAAC|CG- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCC GAGGAAAAGA AAUC(-AACC --)GAGAU|U CC-CCCAGUA GC(GGCGA)G 601 CGA-ACG-GG GA-GGA-GCC CA-------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----gagcc ugaaucagca uguguguu-a gugGAAg-cg u-c(u-ggaa a)g-gcgcgc 781 |g(aua)cAG GG(UGACAGC )CCCGU-Aca c-aaaagcgc aug-ugcug- ----ugagcu 841 c--------- ---------- -----gauGA GUAGGGCGGG A(CACGUG-G UA)UCCUGUC 901 UGAAUAU-GG G-GG(GACCA U)CC-UCC-A AGGCUAA--- -AUACUCCUG ACUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-AGGA-AA GGCGAAAA-G AACCCC(GGC GA-)GGGGA- 1021 -GUGAAA-CA GAACCUGAAA CCGU-GUACG UACAA-G-CA GUGGGAGCAC --ag-g---- 1081 --------(- ---uuua--) ---------- ---ccu-GUG UGACUGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAU-AUUC- UGUAGC-AAG GUUAACC--( -GCAUA)--G 1201 G-GGAGCCGA AGG(GAAA-) CCGAGUCU(U AA-UU)GGGC GU-------- ---------- 1261 ---------- ------u-aa G-UUGCAGGG UAUA-GACCC GAAAC-CCG- GUGA-UCUAG 1321 CCAUGGG|CA GGUUGAAGGU UGGG(UAAC) AC-UAACUGG AGGACCGAAC C-GACUAAU( 1381 -GUUGAAAA) AUUAG|CGG- AUGAC-CUGU GGCUGGGGGU (-GAAAG)GC CAAUCAAACC 1441 GGGAGAUAGC UGGUUCUCCC CGAAAGCUAU (-UUAG)GUA GCGC|-CUCG UGAAU---U| 1501 -CAU|CUCCG G|GGGUAG|A GC-ACUGU-U UCGGCCA-GG |-GGGCC(AU CCC)GGCUUA 1561 CCAAUCCGAU -GCAAACUGC GAA-UA-|CC G-G-A-G--A AUGU---UA| UCA-CGGGAG 1621 ACACAC--GG C-GGGU(GCU AAC)GUCCGU -CGUG-AAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAGUC-AUGG -U-UAA-GUG ------GGAA ACGAUGUG-G 1741 GAAGGCCCA- GACAGCCAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG GU-----CGA GU-CGG-CC- -UGC|GCGGA AGAU-GUAA- 1861 CGGGGCU-AA ACCAU-G|C| ACCGAAGCU| GCGG|cas-g acac---(ug gau------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- guguuguug- GG-UAGGGGA G|-----CGU 2221 U-CUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCGU-U 2341 GAAGGUG-U- G-UC(-GUGA -)GGC--AUG CUGG|AGGUA U-CAGAAGUG CGAAUGC-UG 2401 AC|AUA-AGU A--ACGAUAA AGCGGG(UGA AAAG)CCCGC U|CGCC-GGA AGACCAAGGG 2461 UUCCUG-UCC AACG-(UUAA U)CG|G-GGC AGGGUGAGU| CGA|C-CCCU AAGGCGAGGC 2521 C(GAAA)-G- GCGU-AGUCG AUGG-GAAAC GGG-(UU-AA UAUU)C-CCG U|AC|uu-g- 2581 gu-guu-acu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga a------ggg g--gga-cgg agaaggcua- uguu-g-|gc c-ggg(cg-- 2761 acgg-u-ugu --)cc-cggu -|uuaa---- ---------- ---gcgu-gu aggu------ 2821 -gugugu-uc cagg(ua-aa -u-)cc|g-- guucacuuua a--------- cacu-gaggc 2881 gug-acga|c ga-|------ ------ggca c(-uacg--) gugcu----- ------gaag 2941 --caaca-aa ugcc-cug-| cuuccaggaa a-agccuc-u aagcauca-- ------gg-u 3001 -aacau--ca a|A|UCGUAC CCCAAACC(G ACACA)GG|U GG-UCAGGU- A-(GAGAA)U 3061 ACCAAGGCGC ||UUGAGAGA ACUCGGGUG- ---------- ----AAGGAA CUAGGCAAAA 3121 UGGUGCCGUA AC(-UUCG)G GAGAAGGCAC |GCUGACacg -uaggug--- -----aagug 3181 g(-uuuac)c caug------ ---gagcug- aaGUCAG-U| C(GAA)GAUA CCAGCUG-GC 3241 UG|CAACU-- ---GU(UUAU UAAAA)ACAC AGCACUGUG| CAAACAC(GA AA------)G 3301 UGGACGU-AU ACGGUGUGA- CGCCUGCCCG GU|GCCG-GA A-GGUUAAUU GAUGGGGUCA 3361 GC-------- (G-CAA)--- --------GC GA-AGCUCCU GAUCGAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAU GA-UGGCCAG GCUGUCUCCA CCCGGGACUC 3541 A|GUGAAAUU |GAACUCG-C UG(UGAAGAU G)CAGUGUAC CCGCGGC-AA GACGGAAAGA 3601 CCCCGUGA|A CCU-UUACUA U|AGCUUGAC ACU|GAACAC UGGUCCUUGA UGUGCAGGAU 3661 AGGUGGGAGG CUUUGAAG-- UGUGGAC(GC CA)GUCUGCA UGGAGCCAUC -C-UUGAAAU 3721 ACCACC|CUU U-AAUGGCUG GUG-UUCUAA -CGUGGG--- -CCCG(--UG -AAC)-CGGG 3781 UUGCG-GACA GUGUCUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|UCCUC C(UAA-AGAG 3841 UAAC)GGAGG A|G|C|ACGA AGGUUGGC|U AAUCCUGG(U CGGACA)UCA GGAGGU-UA| 3901 GU(G|CAAUG )GCAUAAGCC AGCUUGACUG CGAGCG(UGA CGG)CGCGAG CAGGUGC(GA 3961 AA)GC-AGGU |CAUAGUGAU CCGGUGGUUC UG(AAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UGA--UACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GAAG 4141 U---A)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGUGGUAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|CG-CUG 4261 GAGAACU|GA -|GGGGGGC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG CAUCACUGGU GUUCGGGU|U GUCAU(GC-C A-)AUGGCA- CUGCCCGGUA 4381 GCU-AMAUGC GGAAGAGAUA AGUGCU(GAA AGCAUCUA)A GCACGAAACU UGCCCC|GAG 4441 AUGAGUCUUC C|CU|GAGCC U(-UUA--)A GKCUC-CUG- AAGG|-AA|C GUUG-(AAGA 4501 CG-A)CGACG -UUGAUAG|G CCGG|GUGUG -UAAGCGCA- -(RAGU-)-- UGCGU|UG-A 4561 GCUA|A|CCG GUACUAAUG- AACCGUGAG| GCUUAA-CCU U-------|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS S.enteri.8 4759 bp RNA RNA 22-JUL-1998 DEFINITION Salmonella enterica V 1,6,14,25:a:e,n,x.; . ACCESSION U77929 KEYWORDS . SOURCE Salmonella enterica V 1,6,14,25:a:e,n,x. ORGANISM Salmonella enterica V 1,6,14,25:a:e,n,x. REFERENCE 1 (bases 1 to 2908) AUTHORS Christensen,H., Nordentoft,S. and Olsen,J.E. TITLE Phylogenetic relationships of Salmonella based on rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 48, 605-610 (1998) STANDARD No information REFERENCE 2 (bases 1 to 2908) AUTHORS Christensen,H. TITLE Direct Submission JOURNAL Submitted (12-NOV-1996) Veterinary Microbiology, Royal Veterinary and Agricultural University, Bulowsvej 13, Frederiksberg 1870, Denmark STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U77929 BASE COUNT 753 a 637 c 899 g 576 t 1894 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGCGAC- --UAAGCGUA CACGGUGGAU 121 G|CCCUGG|C AGUCAG|AG| GC-GAUGAAG GG|CGUG(CU AA-UC-)U|- GCG-AUAAGC 181 GCCGGU|-AA GGU(G-AU-A UGA-)ACCGU UAUAAC-CGG CGAUU|UCCG AAUGGG(GAA 241 A)CCC|AGUG UGA-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----CUCG)- UCACACU-AU CA-UUAACU( 481 GA-AUCCA-- UA)GGU-UAA -U-G--AGG- C-GAAC|CG- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCC GAGGAAAAGA AAUC(-AACC --)GAGAU|U CC-CCCAGUA GC(GGCGA)G 601 CGA-ACG-GG GA-GGA-GCC CA-------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----gagcc ugaaucagca uguguguu-a gugGAAg-cg u-c(u-ggaa a)g-gcgcgc 781 |g(aua)cAG GG(UGACAGC )CCCGU-Aca c-aaaagcgc aug-ugcug- ----ugagcu 841 c--------- ---------- -----gauGA GUAGGGCGGG A(CACGUG-G UA)UCCUGUC 901 UGAAUAU-GG G-GG(GACCA U)CC-UCC-A AGGCUAA--- -AUACUCCUG ACUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-AGGA-AA GGCGAAAA-G AACCCC(GGC GA-)GGGGA- 1021 -GUGAAA-AA GAACCUGAAA CCGU-GUACG UACAA-G-CA GUGGGAGCnn --nn-n---- 1081 --------(- ---nnnn--) ---------- ---nnn-nnG UGACUGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAU-AUUC- UGUAGC-AAG GUUAACC--( -GUAUA)--G 1201 G-GGAGCCGA AGG(GAAA-) CCGAGUCU(U AA-YH)GKGC GU-------- ---------- 1261 ---------- ------u-aa G-UUGCAGGG UAUA-GACCC GAAAC-CCG- GUGA-UCUAG 1321 CCAUGGG|CA GGUUGAAGGU UGGG(UAAC) AC-UAACUGG AGGACCGAAC C-GACUAAU( 1381 -GUUGAAAA) AUUAG|CGG- AUGAC-CUGU GGCUGGGGGU (-GAAAG)GC CAAUCAAACC 1441 GGGAGAUAGC UGGUUCUCCC CGAAAGCUAU (-UUAG)GUA GCGC|-CUCG UGAAU---U| 1501 -CAU|CUCCG G|GGGUAG|A GC-ACUGU-U UCGGCUA-GG |-GGGCC(AU CCC)GGCUUA 1561 CCAACCCGAU -GCAAACUGC GAA-UA-|CC G-G-A-G--A AUGU---UA| UCA-CGGGAG 1621 ACACAC--GG C-GGGU(GCU AAC)GUCCGU -CGUG-AAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAGUC-AUGG -U-UAA-GUG ------GGAA ACGAUGUG-G 1741 GAAGGCCCA- GACAGCCAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG GU-----CGA GU-CGG-CC- -UGC|GCGGA AGAU-GUAA- 1861 CGGGGCU-AA ACCAU-G|C| ACCGAAGCU| GCGG|cagcg nnnn---(nn nn-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- nnnnnnnnn- NN-NNGGGGA G|-----CGU 2221 U-CUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCGU-U 2341 GAAGGUG-U- G-UC(-GUGA -)GGC--AUG CUGG|AGGUA U-CAGAAGUG CGAAUGC-UG 2401 AC|AUA-AGU A--ACGAUAA AGCGGG(UGA AAAG)CCCGC U|CGCC-GGA AGACCAAGGG 2461 UUCCUG-UCC AACG-(UUAA U)CG|G-GGC AGGGUGAGU| CGA|C-CCCU AAGGCGAGGC 2521 C(GAAA)-G- GCGU-AGUCG AUGG-GAAAC GGG-(UU-AA UAUU)C-CCG U|AC|uu-g- 2581 gu-guu-acu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga a------ggg g--gga-cgg agaaggcua- uguu-g-|gc c-ggg(cg-- 2761 acgg-u-ugu --)cc-cggu -|uuaa---- ---------- ---gcgu-gc aggu------ 2821 -gugugu-uc cagg(ca-aa -u-)cc|g-- guucacuuya a--------- cacu-gaggc 2881 gug-acga|c ga-|------ ------ggca c(-uacg--) gugcu----- ------gaag 2941 --caaca-aa ugcc-cug-| cuuccaggaa a-agccuc-u aagcauca-- ------gg-u 3001 -aacau--ca a|A|UCGUAC CCCAAACC(G ACACA)GG|U GG-UCAGGU- A-(GAGAA)U 3061 ACCAAGGCGC ||UUGAGAGA ACUCGGGUG- ---------- ----AAGGAA CUAGGCAAAA 3121 UGGUGCCGUA AC(-UUCG)G GAGAAGGCAC |GCUGACacg -uaggug--- -----aagug 3181 a(-uuuac)u uaug------ ---gagcug- aaGUCAG-U| C(GAA)GAUA CCAGCUG-GC 3241 UG|CAACU-- ---GU(UUAU UAAAA)ACAC AGCACUGUG| CAAACAC(GA AA------)G 3301 UGGACGU-AU ACGGUGUGA- CGCCUGCCCG GU|GCCG-GA A-GGUUAAUU GAUGGGGUCA 3361 GC-------- (G-CAA)--- --------GC GA-AGCUCCU GAUCGAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAU GA-UGGCCAG GCUGUCUCCA CCCGAGACUC 3541 A|GUGAAAUU |GAACUCG-C UG(UGAAGAU G)CAGUGUAC CCGCGGC-AA GACGGAAAGA 3601 CCCCGUGA|A CCU-UUACUA U|AGCUUGAC ACU|GAACAU UGAGCCUUGA UGUGUAGGAU 3661 AGGUGGGAGG CUUUGAAG-- YGUGGAC(GC CA)GUCUGCA UGGAGCCGAC -C-UUGAAAU 3721 ACCACC|CUU U-AAUGUUUG AUG-UUCUAA -CGUGGA--- -CCCG(--UA -AUC)-CGGG 3781 UUGCG-GACA GUGUCUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|UCCUC C(UAA-AGAG 3841 UAAC)GGAGG A|G|C|ACGA AGGUUGGC|U AAUCCUGG(U CGGACA)UCA GGAGGU-UA| 3901 GU(G|CAAUG )GCAUAAGCC AGCUUGACUG CGAGCG(UGA CGG)CGCGAG CAGGUGC(GA 3961 AA)GC-AGGU |CAUAGUGAU CCGGUAGUUC UG(AAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UGA--UACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GAAG 4141 U---A)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGUGGUAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|CG-CUG 4261 GAGAACU|GA -|GGGGGGC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG CAUCACUGGU GUUCGGGU|U GUCAU(GC-C A-)AUGGCA- CUGCCCGGUA 4381 GCU-AAAUGC GGAAGAGAUA AGUGCU(GAA AGCAUCUA)A GCACGAAACU UGCCCC|GAG 4441 AUGAGUUCUC C|CU|GAGAC U(-UAG--)A GUCUC-CUG- AAGG|-AA|C GUUG-(AAGA 4501 CG-A)CGACG -UUGAUAG|G CCGG|GUGUG -UAAGCGCA- -(RRRU-)-- UGCGU|UG-A 4561 GCUA|A|CCG GUACUAAUG- AACCGUGAG| GCUUAA-CCU U-------|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS S.bongori 4759 bp RNA RNA 22-JUL-1998 DEFINITION Salmonella bongori 66:z41:-.; . ACCESSION U77927 KEYWORDS . SOURCE Salmonella bongori 66:z41:-. ORGANISM Salmonella bongori 66:z41:-. REFERENCE 1 (bases 1 to 2906) AUTHORS Christensen,H., Nordentoft,S. and Olsen,J.E. TITLE sequences Phylogenetic relationships of Salmonella based on rRNA JOURNAL Int. J. Syst. Bacteriol. 48, 605-610 (1998) STANDARD No information REFERENCE 2 (bases 1 to 2906) AUTHORS Christensen,H. TITLE Direct Submission JOURNAL Submitted (12-NOV-1996) Veterinary Microbiology, Royal Veterinary and Agricultural University, Bulowsvej 13, Frederiksberg 1870, Denmark STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U77927 BASE COUNT 755 a 652 c 923 g 571 t 1858 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGCGAC- --CAAGCGUA CACGGUGGAU 121 G|CCCUGG|C AGUCAG|AG| GC-GAUGAAG GA|CGUG(CU AA-UC-)U|- GCG-AAAAGC 181 GCCGGC|-GA GGU(G-AU-A UGA-)ACCCG UUGACC-CGG CGAUG|UCCG AAUGGG(GAA 241 A)CCC|AGUG UGA-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----CUCG)- UCACACU-AU CA-UUAACU( 481 GA-AUCCA-- UA)GGU-UAA -U-G--AGG- C-gaAC|CG- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCC GAGGAAAAGA AAUC(-AACC --)GAGAU|U CC-CCCAGUA GC(GGCGA)G 601 CGA-ACG-GG GA-GGA-GCC CA-------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----GAGCC UGAAUCAGCA GGUGUGUU-A GUGGAAG-CG U-C(U-ggaa a)G-GCACGC 781 |G(AUA)CAG GG(UGAGAGC )CCCGU-Aca c-gaaaaugc acc-ugcug- ----ugagcu 841 c--------- ---------- -----gauGA GUAGGGCGGG A(CACGUG-G UA)UCCUGUC 901 UGAAUAU-GG G-GG(GACCA U)CC-UCC-A AGGCUAA--- -AUACUCCUG ACUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGCGAAAA-G AACCCC(GGC GA-)GGGGA- 1021 -GUGAAA-AA GAACCUGAAA CCGU-GUACG UACAA-G-CA GUGGGAGCAC --ag-g---- 1081 --------(- ---uuua--) ---------- ---cCU-GUG UGACUGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAU-AUUC- UGUAGC-AAG GUUAACC--( -GAAUA)--G 1201 G-GGAGCCGG AGG(GAAA-) CCGAGUCU(U AA-CU)GGGC GU-------- ---------- 1261 ---------- ------u-aa G-UUGCAGGG UAUA-GACCC GAAAC-CCG- GUGA-UCUAG 1321 CCAUGGG|CA GGUUGAAGGU UGGG(UAAC) AC-UAACUGG AGGACCGAAC C-GACUAAU( 1381 -GUUGAAAA) AUUAG|CGG- AUGAC-CUGU GGCUGGGGGU (-GAAAG)GC CAAUCAAACC 1441 GGGAGAUAGC UGGUUCUCCC CGAAAGCUAU (-UUAG)GUA GCGC|-CUCG UGAAC---U| 1501 -CAU|CUCCG G|GGGUAG|A GC-ACUGU-U UCGGCUA-GG |-GGGCC(AU CCC)GGCUUA 1561 CCAACCCGAU -GCAAACUGC GAA-UA-|CC G-G-A-G--A AUGU---UA| UCA-CGGGAG 1621 ACACAC--GG C-GGGU(GCU AAC)GUCCGU -CGUG-AAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAGUC-AUGG -U-UAA-GUG ------GGAA ACGAUGUG-G 1741 GAAGGCCCA- GACAGCCAGG AUGUUGGC(U UAGAAGCA)G CCAA-MAU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG GU-----CGA GU-CGG-CC- -NVM|VCGGA AGAU-GUAA- 1861 CGGGGCA-AA ACCAU-G|C| ACCGAAGCU| GCGG|cagcg gcac---(gc aa-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- guguuguug- GG-UAGGGGA G|-----CGU 2221 U-CUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCGU-U 2341 GAAGGUG-U- G-CU(-GUGA -)GGC--AUG CUGG|AGGUA U-CAGAAGUG CGAAUGC-UG 2401 AC|AUA-AGU A--ACGAUAA AGCGGG(UGA AAAG)CCCGC U|CGCC-GGA AGACCAAGGG 2461 UUCCUG-UCC AACG-(UUAA U)CG|G-GGC AGGGUGAGU| CGA|C-CCCU AAGGCGAGGC 2521 C(GAAA)-G- GCGU-AGUCG AUGG-GAAAC GGG-(UU-AA UAUU)C-CCG U|AC|uu-g- 2581 gu-guu-acu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga a------ggg g--gga-cgg agaaggcua- uguu-g-|gc c-ggg(cg-- 2761 acgg-u-ugu --)cc-cggu -|uuaa---- ---------- ---gcgu-gu aggc------ 2821 -ugguuu-uc cagg(ca-aa -u-)cc|g-- gaaaaucaa- ---------- ggcu-gaggc 2881 gug-acga|c ga-|------ ------ggca c(-cacg--) gugcu----- ------gaag 2941 --caaca-aa ugcc-cug-| cuuccaggaa a-agccuc-u aagcguca-- ------gg-u 3001 -aacau--ca a|A|UCGUAC CCCAAACC(G ACACA)GG|U GG-UCAGGU- A-(GAGAA)U 3061 ACCAAGGCGC ||UUGAGAGA ACUCGGGUG- ---------- ----AAGGAA CUAGGCAAAA 3121 UGGUGCCGUA AC(-UUCG)G GAGAAGGCAC |GCUGACaug -uaggug--- -----aagcg 3181 g(-uuuac)c cgug------ ---gagcug- aaGUCAG-U| C(GAA)GAUA CCAGCUG-GC 3241 UG|CAACU-- ---GU(UUAU UAAAA)ACAC AGCACUGUG| CAAACAC(GA AA------)G 3301 UGGACGU-AU ACGGUGUGA- CGCCUGCCCG GU|GCCG-GA A-GGUUAAUU GAUGGGGUCA 3361 GC-------- (G-CAA)--- --------GC GA-AGCUCCU GAUCGAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAU GA-UGGCCAG GCUGUCUCCA CCCGAGACUC 3541 A|GUGAAAUU |GAACUCG-C UG(UGAAGAU G)CAGUGUAC CCGCGGC-AA GACGGAAAGA 3601 CCCCGUGA|A CCU-UUACUA U|AGCUUGAC ACU|GAACAC UGGUCCUUGA UGUGCAGGAU 3661 AGGUGGGAGG CUUUGAAG-- CGUGGAC(GC CA)GUCUGCG UGGAGCCGUC -C-UUGAAAU 3721 ACCACC|CUU U-AAUGGCUG GUG-UUCUAA -CGUGGG--- -CCCG(--UG -AAC)-CGGG 3781 UUGCG-GACA GUGUCUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|UCCUC C(CAA-AGAG 3841 UAAC)GGAGG A|G|C|ACGA AGGUUGGC|U AAUCCUGG(U CGGACA)UCA GGAGGU-UA| 3901 GU(G|CAAUG )GCAUAAGCC AGCUUGACUG CGAGCG(UGA CGG)CGCGAG CAGGUGC(GA 3961 AA)GC-AGGU |CAUAGUGAU CCGGUGGUUC UG(AAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UGA--UACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GAAG 4141 U---A)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGUGGUAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|CG-CUG 4261 GAAGAUU|GA -|GGGGGGC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG CAUCACUGGU GUUCGGGU|U GUCAU(GC-C A-)AUGGCA- CUGCCCGGUA 4381 GCU-AAAUGC GGAAGAGAUA AGUGCU(GAA AGCAUCUA)A GCACGAAACU UGCCCC|GAG 4441 AUGAAUCUUC C|CU|GAGAC U(-UUA--)A GUCUC-CUG- AAGG|-AA|C GUUG-(AAGA 4501 CG-A)CGAGG -UUGAUAG|G CCGG|GUGUG -UAAGCGCA- -(GCUU-)-- UGCGU|UG-A 4561 GCUA|A|CCG GUACUAAUG- AACCGUGAG| GCUUAA-CCU U-------|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS E.coli.A1 4759 bp RNA RNA 11-JAN-191 DEFINITION Escherichia coli subsp. strain K-12. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli subsp. strain K-12. ORGANISM Escherichia coli. REFERENCE 1 (bases 1 to 2906) AUTHORS Young,R.A. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: M87049 LOCUS ECOUW85U 91408 bp ds-DNA BCT 08-SEP-1993 DEFINITION E. coli genomic sequence of the region from 84.5 to 86.5 minutes. ACCESSION M87049 KEYWORDS acetohydroxy acid isomeroreductase; aspT gene; f133 gene; f198 gene; f516 gene; ilvC gene; ilvY gene; ketol-acid reductoisomerase; o137 gene; o221 gene; terminator; trpT gene. SOURCE Escherichia coli (strain K-12) DNA. ORGANISM Escherichia coli Prokaryotae; Gram-negative facultatively anaerobic rods; Enterobacteriaceae. REFERENCE 1 (sites) AUTHORS Young,R.A. TITLE Transcription termination in the Escherichia coli ribosomal RNA operon rrnC JOURNAL J. Biol. Chem. 254, 12725-12731 (1979) STANDARD full automatic REFERENCE 2 (sites) AUTHORS Nargang,F.E., Subrahmanyam,C.S. and Umbarger,H.E. TITLE Nucleotide sequence of ilvGEDA operon attenuator region of Escherichia coli JOURNAL Proc. Natl. Acad. Sci. U.S.A. 77, 1823-1827 (1980) STANDARD full automatic REFERENCE 3 (sites) AUTHORS Lawther,R.P. and Hatfield,G.W. TITLE Multivalent translational control of transcription termination at attenuator of ilvGEDA operon of Escherichia coli K-12 JOURNAL Proc. Natl. Acad. Sci. U.S.A. 77, 1862-1866 (1980) STANDARD full automatic REFERENCE 4 (sites) AUTHORS Lawther,R.P., Calhoun,D.H., Adams,C.W., Hauser,C.A., Gray,J. and Hatfield,G.W. TITLE Molecular basis of valine resistance in Escherichia coli K-12 JOURNAL Proc. Natl. Acad. Sci. U.S.A. 78, 922-925 (1981) STANDARD full automatic REFERENCE 5 (sites) AUTHORS Raftery,L.A., Egan,J.B., Cline,S.W. and Yarus,M. TITLE Defined set of cloned termination suppressors: In vivo activity of isogenic UAG, UAA, and UGA suppressor tRNAs JOURNAL J. Bacteriol. 158, 849-859 (1984) STANDARD full automatic REFERENCE 6 (sites) AUTHORS Harms,E.H., Hsu,J.-H., Subrahmanyam,C.S. and Umbarger,H.E. TITLE Comparison of the regulatory regions of ilvGEDA operons from several enteric organisms JOURNAL J. Bacteriol. 164, 207-216 (1985) STANDARD full automatic REFERENCE 7 (sites) AUTHORS Coppola,G., Huang,F., Riley,J., Cox,J.L., Hantozopoulos,P., Zhou,L.-B. and Calhoun,D.H. TITLE Sequence and transcriptional activity of the Escherichia coli K-12 chromosome region between rrnC and ilvGMEDA JOURNAL Gene 97, 21-27 (1991) STANDARD full automatic REFERENCE 8 (sites) AUTHORS Pagel,J.M., Winkelman,J.W., Adams,C.W. and Hatfield,G.W. TITLE DNA topology-mediated regulation of transcription initiation from the tandem promoters of the ilvGMEDA operon of Escherichia coli JOURNAL J. Mol. Biol. 224, 919-935 (1992) STANDARD full automatic REFERENCE 9 (bases 1 to 91408) AUTHORS Daniels,D.L., Plunkett,G.III., Burland,V.D. and Blattner,F.R. TITLE Analysis of the Escherichia coli genome: DNA Sequence of the region from 84.5 to 86.5 minutes JOURNAL Science 257, 771-778 (1992) STANDARD full automatic COMMENT This sequence was determined as part of the E. coli Genome Project (Frederick R. Blattner, director) at the University of Wisconsin-Madison. Supported by award HG00301 from the NIH Human Genome Project. A preliminary report was presented at the Cold Spring Harbor meeting 'The Genome of E. coli' Oct. 16-19,1991. The entire sequence was independently determined from E. coli MG1655; overlaps and conflicts with other sequence determinations are annotated. Data kindly submitted in computer readable form by: Donna L. Daniels Laboratory of Genetics University of Wisconsin 445 Henry Mall Madison WI 53706 USA Phone: 608-262-2534 Email: donna@genetics.wisc.edu Fax: 608-263-7459 [Science (1992) In press] Author requested hold until publication. NCBI gi: 148169 FEATURES Location/Qualifiers source 1..91408 /organism="Escherichia coli" many many lines deleted. many many lines deleted. rRNA 88585..90126 /gene="rrsA (CGSC No. 189)" /product="16S ribosomal RNA" misc_feature 89608..90323 /note="K01057 may be rrnD or rrnH instead of rrnA" misc_difference 89624 /note="C in K01057; T here" misc_difference 89633..89634 /note="TNG in K01057; TG here" misc_difference 89649..89650 /note="T in K01057; TC here" misc_difference 89654..89655 /note="T in K01057; TC here" misc_difference 89737 /note="GA in K01057; G here" misc_difference 89791 /note="GA in K01057; G here" misc_difference 89808 /note="G in K01057; T here" misc_difference 89845 /note="AA in K01057; A here" misc_difference 90141 /note="A in K01057; T here" misc_difference 90147 /note="C in K01057; A here" tRNA 90195..90271 /gene="ileT (CGSC No. 612)" /product="transfer RNA-Ile1" tRNA 90314..90389 /gene="alaT (CGSC No. 1038)" /product="transfer RNA-Ala1B" misc_difference 90314..90317 /note="GG in K01057; GGGG here" misc_difference 90320..90321 /note="A in K01057; AT here" rRNA 90564..>91408 /gene="rrlA (CGSC No. 203)" /product="23S ribosomal RNA" BASE COUNT 21251 a 23089 c 24848 g 22107 t 113 others ORIGIN EcoRI site at 3974.776 kb in EcoMap5 84.7 min on genetic map; 85.0. BASE COUNT 241 a 177 c 261 g 165 t 3915 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGCGAC- --UAAGCGUA CACGGUGGAU 121 G|CCCUGG|C AGUCAG|AG| GC-GAUGAAG GA|CGUG(CU AA-UC-)U|- GCG-AUAAGC 181 GUCGGU|-AA GGU(G-AU-A UGA-)ACCGU UAUAAC-CGG CGAUU|UCCG AAUGGG(GAA 241 A)CCC|AGUG UGU-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----UUCG)- ACACACU-AU CA-UUAACU( 481 GA-AUCCA-- UA)GGU-UAA -U-G--AGG- C-GAAC|CG- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCC GAGGAAAAGA AAUC(-AACC --)GAGAU|U CC-CCCAGUA GC(GGCGA)G 601 CGA-ACG-GG GA-GCA-GCC CA-------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----gagcc ugaaucagug uguguguu-a guggaag-cg u-c(u-ggaa a)g-gcgygc 781 |g(aua)caG GG(UGACAGC )CCCGU-Aca c-aaaaaugc aca-ugcug- ----ugagcu 841 c--------- ---------- -----gauGA GUAGGGCGGG A(CACGUG-G UA)UCCUGUC 901 UGAAUAU-GG G-GG(GACCA U)CC-UCC-A AGGCUAA--- -AUACUCCUG ACUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGCGAAAA-G AACCCC(GGC GA-)GGGGA- 1021 -GUGAAA-AA GAACCUGAAA CCGU-GUACG UACAA-G-CA GUGGGAGCAC --GC------ 1081 --------(- ---uuag--) ---------- ----GC-GUG UGACUGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAU-AUUC- UGUAGC-AAG GUUAACC--( -GAAUA)--G 1201 G-GGAGCCGA AGG(GAAA-) CCGAGUCU(U AA-CU)GGGC GU-------- ---------- 1261 ---------- ------u-aa G-UUGCAGGG UAUA-GACCC GAAAC-CCG- GUGA-UCUAG 1321 CCAUGGG|CA GGUUGAAGGU UGGG(UAAC) AC-UAACUGG AGGACCGAAC C-GACUAAU( 1381 -GUUGAAAA) AUUAG|CGG- AUGAC-UUGU GGCUGGGGGU (-GAAAG)GC CAAUCAAACC 1441 GGGAGAUAGC UGGUUCUCCC CGAAAGCUAU (-UUAG)GUA GCGC|-CUCG UGAA~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS E.coli.A2 4759 bp RNA RNA 11-JAN-191 DEFINITION Escherichia coli. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli. ORGANISM Escherichia coli. REFERENCE 1 (bases 1 to 2906) AUTHORS Plunkett,G., Burland,V., Daniels,D.L. and Blattner,F.R. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: L19201 LOCUS ECOUW87 96484 bp ds-DNA BCT 29-OCT-1993 DEFINITION E. coli chromosomal region from 87.2 to 89.2 minutes. ACCESSION L19201 KEYWORDS 23S ribosomal RNA; 5,10 methylenetetrahydrofolate reductase; 50S ribosomal protein L31; 5S ribosomal RNA; 6-phosphofructokinase; CDP-diglyceride hydrolase; DNA polymerase I; L-rhamnose isomerase; Spot 42 RNA; aspartokinase II/homoserine; attP2II; catalase HPI; catalase hydroperoxidase I; cdh gene; chemosensory transducer; cpxA gene; cystathionine; cytR gene; dehydrogenase II; dsbA gene; extragenic palindromic element; fdhD gene; fdhE gene; fdoG gene; fdoH gene; fdoI gene; formate dehydrogenase-O alpha subunit; formate dehydrogenase-O beta subunit; formate dehydrogenase-O gamma; gamma-synthase; glnA gene; glnG gene; glnL gene; glpF gene; glpK gene; glpX gene; glutamine synthetase; glycerol kinase; hslU gene; hslV gene; katG gene; kdgT gene; manganese superoxide dismutase; metB gene; metF aporepressor; metF gene; metJ gene; metL gene; mob gene; msgA gene; periplasmic sulphate binding protein; pfkA gene; polA gene; priA gene; primosomal protein replication factor; rhaA gene; rhaB gene; rhaD gene; rhaR gene; rhaS gene; rhaT gene; rhamnose permease; rhamnulokinase; rhamnulose kinase; rhamnulose-1-phosphate aldolase; rpmE gene; rrfA gene; rrlA gene; sbp gene; sodA gene; spf gene; suppressor; tpiA gene; triosephosphate isomerase; triosephosphate mutase.. SOURCE Escherichia coli (sub_strain MG1655, strain K-12) (library: lambda) DNA. ORGANISM Escherichia coli Prokaryotae; Gram-negative facultatively anaerobic rods; Enterobacteriaceae. REFERENCE 1 (bases 1 to 96484) AUTHORS Plunkett,G., Burland,V., Daniels,D.L. and Blattner,F.R. TITLE Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes JOURNAL Nucleic Acids Res. 21, 3391-3398 (1993) STANDARD full automatic COMMENT This sequence was determined as part of the E. coli Genome Project (Frederick R. Blattner, director) at the University of Wisconsin-Madison. Supported by award HG00301 from the NIH Human Genome Project. A preliminary report was presented at the Small Genomes meeting, March 28-30 1993, Paris, France. The entire sequence was independently determined from E. coli MG1655; overlaps and conflicts with other sequence determinations are annotated. The start of this entry overlaps the end of the entry ECOUW85U (M87049) by the three bases of an EcoRI half-site. Data kindly submitted in computer readable form by: Guy Plunkett III Laboratory of Genetics University of Wisconsin 445 Henry Mall Madison WI 53706 USA Phone: 608-262-2534 Email: ecoli@genetics.wisc.edu Fax: 608-263-7459. NCBI gi: 304961 FEATURES Location/Qualifiers source 1..96484 /organism="Escherichia coli" /sub_strain="MG1655" /strain="K-12" /sequenced_mol="DNA" /tissue_lib="lambda" /note="This sequence comprises the following lambda clones: EC21-16, EC27-1225, EC27-649, EC19-119, EC23A58, EC27-267, EC18-126. M13mp19 or Janus vectors were used for subcloning" rRNA <1..2063 /gene="rrlA" /standard_name="23S rRNA" /note="CG Site No. 203" /product="23S ribosomal RNA" misc_feature 1..3 /note="Eco RI half-site is 3bp overlap with end of M87049 ECOWU85U" misc_feature 1..19281 /note="corresponds to lambda clone EC21-16" rRNA 2157..2276 /gene="rrfA" /standard_name="5S rRNA" /note="CG Site No. 210" /product="5S ribosomal RNA" terminator 2282..2321 /note="putative" terminator 2459..2483 /note="putative" many many lines deleleted. many many lines deleleted. BASE COUNT 23614 a 24221 c 25104 g 23525 t 20 others ORIGIN Eco RI site at 4067.648 in EcoMap5. BASE COUNT 525 a 458 c 650 g 428 t 2698 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ 1201 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 1381 ~~~~~~~~~) ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|~~~~~ ~GAAU---U| 1501 -CAU|CUCCG G|GGGUAG|A GC-ACUGU-U UCGGCAA-GG |-GGGUC(AU CCC)GACUUA 1561 CCAACCCGAU -GCAAACUGC GAA-UA-|CC G-G-A-G--A AUGU---UA| UCA-CGGGAG 1621 ACACAC--GG C-GGGU(GCU AAC)GUCCGU -CGUG-AAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAGUC-AUGG -U-UAA-GUG ------GGAA ACGAUGUG-G 1741 GAAGGCCCA- GACAGCCAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG GU-----CGA GU-CGG-CC- -UGC|GCGGA AGAU-GUAA- 1861 CGGGGCU-AA ACCAU-G|C| ACCGAAGCU| GCGG|cagcg acac---(u- au-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- guguuguug- GG-UAGGGGA G|-----CGU 2221 U-CUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCUG-U 2341 GAAGGUG-U- G-CU(-GUGA -)GGC--AUG CUGG|AGGUA U-CAGAAGUG CGAAUGC-UG 2401 AC|AUA-AGU A--ACGAUAA AGCGGG(UGA AAAG)CCCGC U|CGCC-GGA AGACCAAGGG 2461 UUCCUG-UCC AACG-(UUAA U)CG|G-GGC AGGGUGAGU| CGA|C-CCCU AAGGCGAGGC 2521 C(GAAA)-G- GCGU-AGUCG AUGG-GAAAC AGG-(UU-AA UAUU)C-CUG U|AC|uu-g- 2581 gu-guu-acu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga a------ggg g--gga-cgg agaaggcua- uguu-g-|gc c-ggg(cg-- 2761 acgg-u-ugu --)cc-cggu -|uuaa---- ---------- ---gcgu-gu aggc------ 2821 -ugguuu-uc cagg(ca-aa -u-)cc|g-- gaaaaucaa- ---------- ggcu-gaggc 2881 gug-auga|c ga-|------ ------gssa c(-uacg--) gugcu----- ------gaag 2941 --caaca-aa ugcc-cug-| cuuccaggaa a-agccuc-u aagcauca-- ------gg-u 3001 -aacau--ca a|A|UCGUAC CCCAAACC(G ACACA)GG|U GG-UCAGGU- A-(GAGAA)U 3061 ACCAAGGCGC ||UUGAGAGA ACUCGGGUG- ---------- ----AAGGAA CUAGGCAAAA 3121 UGGUGCCGUA AC(-UUCG)G GAGAAGGCAC |GCUGAUaug -uaggug--- -----aagcg 3181 a(-cuugc)u cgug------ ---gagcug- aaAUCAG-U| C(GAA)GAUA CCAGCUG-GC 3241 UG|CAACU-- ---GU(UUAU UAAAA)ACAC AGCACUGUG| CAAACAC(GA AA------)G 3301 UGGACGU-AU ACGGUGUGA- CGCCUGCCCG GU|GCCG-GA A-GGUUAAUU GAUGGGGUUA 3361 GCc------- (G-CAA)--- -------gGC GA-AGCUCUU GAUCGAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAU GA-UGGCCAG GCUGUCUCCA CCCGAGACUC 3541 A|GUGAAAUU |GAACUCG-C UG(UGAAGAU G)CAGUGUAC CCGCGGC-AA GACGGAAAGA 3601 CCCCGUGA|A CCU-UUACUA U|AGCUUGAC ACU|GAACAU UGAGCCUUGA UGUGUAGGAU 3661 AGGUGGGAGG CUUUGAAG-- UGUGGAC(GC CA)GUCUGCA UGGAGCCGAC -C-UUGAAAU 3721 ACCACC|CUU U-AAUGUUUG AUG-UUCUAA -CGUUGA--- -CCCG(--UA -AUC)-CGGG 3781 UUGCG-GACA GUGUCUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|UCCUC C(UAA-AGAG 3841 UAAC)GGAGG A|G|C|ACGA AGGUUGGC|U AAUCCUGG(U CGGACA)UCA GGAGGU-UA| 3901 GU(G|CAAUG )GCAUAAGCC AGCUUGACUG CGAGCG(UGA CGG)CGCGAG CAGGUGC(GA 3961 AA)GC-AGGU |CAUAGUGAU CCGGUGGUUC UG(AAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UGA--UACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GAAG 4141 U---A)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGUGGUAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|CG-CUG 4261 GAGAACU|GA -|GGGGGGC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG CAUCACUGGU GUUCGGGU|U GUCAU(GC-C A-)AUGGCA- CUGCCCGGUA 4381 GCU-AAAUGC GGAAGAGAUA AGUGCU(GAA AGCAUCUA)A GCACGAAACU UGCCCC|GAG 4441 AUGAGUUCUC C|CU|GACUC C(-UUG--)A GAGUC-CUG- AAGG|-AA|C GUUG-(AAGA 4501 CG-A)CGACG -UUGAUAG|G CCGG|GUGUG -UAAGCGCA- -(GCGA-)-- UGCGU|UG-A 4561 GCUA|A|CCG GUACUAAUG- AACCGUGAG| GCUUAA-CCU U-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS E.coli.B 4759 bp RNA RNA 11-JAN-191 DEFINITION Escherichia coli subsp. sub_strain MG1655, strain K-12. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli subsp. sub_strain MG1655, strain K-12. ORGANISM Escherichia coli. REFERENCE 1 (bases 1 to 2906) AUTHORS Blattner,F.R., Burland,V.D., Plunkett,G.,III, Sofia, H.J. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U00006 LOCUS ECOUW89 176195 bp ds-DNA BCT 17-DEC-1993 DEFINITION E. coli chromosomal region from 89.2 to 92.8 minutes. ACCESSION U00006 KEYWORDS . SOURCE Escherichia coli (sub_strain MG1655, strain K-12) (library: lambda) DNA. ORGANISM Escherichia coli Eubacteria; Gracilicutes; Scotobacteria; Facultatively anaerobic rods; Enterobacteriaceae; Escherichia. REFERENCE 1 (bases 1 to 176195) AUTHORS Blattner,F.R., Burland,V.D., Plunkett,G.,III, Sofia, H.J. and Daniels,D.L. TITLE Analysis of the Escherichia coli genome IV. DNA sequence of the region from 89.2 to 92.8 minutes JOURNAL Nucleic Acids Res. 21, 5408-5417 (1993) STANDARD full automatic COMMENT This sequence was determined as part of the E. coli Genome Project (Frederick R. Blattner, director) at the University of Wisconsin-Madison. Supported by award HG00301 from the NIH Human Genome Project. The entire sequence was independently determined from E. coli MG1655; overlaps and conflicts with other sequence determinations are annotated. The start of this entry overlaps the end of the entry ECOUW87 (L19201) by 93 bp. NOTE: An update was submitted on 25-OCT-1993, reflecting a correction to the hemE sequence. NCBI gi: 409785 FEATURES Location/Qualifiers source 1..176195 /organism="Escherichia coli" /strain="K-12" /sub_strain="MG1655" /sequenced_mol="DNA" /note="This sequence comprises the following lambda clones: EC18-126, EC14-54, EC21-52, EC17-24, EC17-203, EC19-105, EC18-208, EC18-110, EC17-200, EC18-33, EC30-262, EC30-41, EC30K637-2a, EC30K637-5, EC27-975, EC22-27; M13mp19 or Janus vectors were used for subcloning" many many lines deleleted. many many lines deleleted. rRNA 31901..33442 /gene="rrsB" /standard_name="16S rRNA of rrnB operon" /note="CG Site No. 188" /product="16S ribosomal RNA" tRNA 33614..33689 /gene="gltT" /standard_name="glutamate tRNA 2 of rrnB operon" /note="CG Site No. 680; alternate gene name tgtB" /product="glutamate transfer RNA 2" misc_structure 33666..33810 /note="predicted bend of 77 degrees" misc_difference 33760 /note="T in J10695; N in V00348; A here" rRNA 33883..36786 /gene="rrlB" /standard_name="23S rRNA of rrnB operon" /note="CG Site No. 202" /product="23S ribosomal RNA" misc_feature 36875..37000 /note="corresponds to M25630; ECORRB(1..126)" rRNA 36879..36998 /gene="rrfB" /standard_name="5S rRNA of rrnB operon" /note="CG Site No. 209" /product="5S ribosomal RNA" misc_feature 36999..39489 /note="corresponds to M10123; ECOBIRA(1..2491)" terminator 37003..37044 /note="putative" terminator 37175..37205 /note="putative" many many lines deleleted. many many lines deleleted. rRNA 73388..74929 /gene="rrsE" /standard_name="16S rRNA of rrnE operon" /note="CG Site No. 185" /product="16S ribosomal RNA" misc_difference 73413 /note="G in J01697, V00335; A here" tRNA 75015..75090 /gene="gltV" /standard_name="glutamate tRNA 2 of rrnE operon" /note="CG Site No. 678; alternate gene name tgtE" /product="glutamate transfer RNA 2" misc_structure 75098..75209 /note="predicted bend of 72 degrees" rRNA 75285..78188 /gene="rrlE" /standard_name="23S rRNA of rrnE operon" /note="CG Site No. 199" /product="23S ribosomal RNA" misc_feature 78282..79725 /note="corresponds to X02800; ECORRNE(1..1444)" rRNA 78282..78401 /gene="rrfE" /standard_name="5S rRNA of rrnE operon" /note="CG Site No. 206" /product="5S ribosomal RNA" terminator 78410..78441 /note="putative" many many lines deleleted. many many lines deleleted. BASE COUNT 762 a 639 c 912 g 591 t 1855 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGCGAC- --UAAGCGUA CACGGUGGAU 121 G|CCCUGG|C AGUCAG|AG| GC-GAUGAAG GA|CGUG(CU AA-UC-)U|- GCG-AUAAGC 181 GUCGGU|-AA GGU(G-AU-A UGA-)ACCGU UAUAAC-CGG CGAUU|UCCG AAUGGG(GAA 241 A)CCC|AGUG UGU-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----UUCG)- ACACACU-AU CA-UUAACU( 481 GA-AUCCA-- UA)GGU-UAA -U-G--AGG- C-GAAC|CG- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCC GAGGAAAAGA AAUC(-AACC --)GAGAU|U CC-CCCAGUA GC(GGCGA)G 601 CGA-ACG-GG GA-GCA-GCC CA-------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----gagcc ugaaucagug uguguguu-a guggaag-cg u-c(u-ggaa a)g-gcgcgc 781 |g(aua)caG GG(UGACAGC )CCCGU-Aca c-aaaaaugc aca-ugcug- ----ugagcu 841 c--------- ---------- -----gauGA GUAGGGCGGG A(CACGUG-G UA)UCCUGUC 901 UGAAUAU-GG G-GG(GACCA U)CC-UCC-A AGGCUAA--- -AUACUCCUG ACUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGCGAAAA-G AACCCC(GGC GA-)GGGGA- 1021 -GUGAAA-AA GAACCUGAAA CCGU-GUACG UACAA-G-CA GUGGGAGCAC --GC------ 1081 --------(- ---uuag--) ---------- ----GC-GUG UGACUGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAU-AUUC- UGUAGC-AAG GUUAACC--( -GAAUA)--G 1201 G-GGAGCCGA AGG(GAAA-) CCGAGUCU(U AA-CU)GGGC GU-------- ---------- 1261 ---------- ------u-aa G-UUGCAGGG UAUA-GACCC GAAAC-CCG- GUGA-UCUAG 1321 CCAUGGG|CA GGUUGAAGGU UGGG(UAAC) AC-UAACUGG AGGACCGAAC C-GACUAAU( 1381 -GUUGAAAA) AUUAG|CGG- AUGAC-UUGU GGCUGGGGGU (-GAAAG)GC CAAUCAAACC 1441 GGGAGAUAGC UGGUUCUCCC CGAAAGCUAU (-UUAG)GUA GCGC|-CUCG UGAAU---U| 1501 -CAU|CUCCG G|GGGUAG|A GC-ACUGU-U UCGGCAA-GG |-GGGUC(AU CCC)GACUUA 1561 CCAACCCGAU -GCAAACUGC GAA-UA-|CC G-G-A-G--A AUGU---UA| UCA-CGGGAG 1621 ACACAC--GG C-GGGU(GCU AAC)GUCCGU -CGUG-AAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAGUC-AUGG -U-UAA-GUG ------GGAA ACGAUGUG-G 1741 GAAGGCCCA- GACAGCCAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG GU-----CGA GU-CGG-CC- -UGC|GCGGA AGAU-GUAA- 1861 CGGGGCU-AA ACCAU-G|C| ACCGAAGCU| GCGG|cagcg acgc---(uu au-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- gcguuguug- GG-UAGGGGA G|-----CGU 2221 U-CUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCUG-C 2341 GAAGGUG-U- G-CU(-GUGA -)GGC--AUG CUGG|AGGUA U-CAGAAGUG CGAAUGC-UG 2401 AC|AUA-AGU A--ACGAUAA AGCGGG(UGA AAAG)CCCGC U|CGCC-GGA AGACCAAGGG 2461 UUCCUG-UCC AACG-(UUAA U)CG|G-GGC AGGGUGAGU| CGA|C-CCCU AAGGCGAGGC 2521 C(GAAA)-G- GCGU-AGUCG AUGG-GAAAC AGG-(UU-AA UAUU)C-CUG U|AC|uu-g- 2581 gu-guu-acu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga a------ggg g--gga-cgg agaaggcua- uguu-g-|gc c-ggg(cg-- 2761 acgg-u-ugu --)cc-cggu -|uuaa---- ---------- ---gcgu-gu aggc------ 2821 -ugguuu-uc cagg(ca-aa -u-)cc|g-- gaaaaucaa- ---------- ggcu-gaggc 2881 gug-auga|c ga-|------ ------ggca c(-uacg--) gugcu----- ------gaag 2941 --caaca-aa ugcc-cug-| cuuccaggaa a-agccuc-u aagcauca-- ------gg-u 3001 -aacau--ca a|A|UCGUAC CCCAAACC(G ACACA)GG|U GG-UCAGGU- A-(GAGAA)U 3061 ACCAAGGCGC ||UUGAGAGA ACUCGGGUG- ---------- ----AAGGAA CUAGGCAAAA 3121 UGGUGCCGUA AC(-UUCG)G GAGAAGGCAC |GCUGAUaug -uaggug--- -----agguc 3181 c(-cucgc)g gaug------ ---gagcug- aaAUCAG-U| C(GAA)GAUA CCAGCUG-GC 3241 UG|CAACU-- ---GU(UUAU UAAAA)ACAC AGCACUGUG| CAAACAC(GA AA------)G 3301 UGGACGU-AU ACGGUGUGA- CGCCUGCCCG GU|GCCG-GA A-GGUUAAUU GAUGGGGUUA 3361 GC-------- (G-CAA)--- --------GC GA-AGCUCUU GAUCGAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAU GA-UGGCCAG GCUGUCUCCA CCCGAGACUC 3541 A|GUGAAAUU |GAACUCG-C UG(UGAAGAU G)CAGUGUAC CCGCGGC-AA GACGGAAAGA 3601 CCCCGUGA|A CCU-UUACUA U|AGCUUGAC ACU|GAACAU UGAGCCUUGA UGUGUAGGAU 3661 AGGUGGGAGG CUUUGAAG-- UGUGGAC(GC CA)GUCUGCA UGGAGCCGAC -C-UUGAAAU 3721 ACCACC|CUU U-AAUGUUUG AUG-UUCUAA -CGUUGA--- -CCCG(--UA -AUC)-CGGG 3781 UUGCG-GACA GUGUCUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|UCCUC C(UAA-AGAG 3841 UAAC)GGAGG A|G|C|ACGA AGGUUGGC|U AAUCCUGG(U CGGACA)UCA GGAGGU-UA| 3901 GU(G|CAAUG )GCAUAAGCC AGCUUGACUG CGAGCG(UGA CGG)CGCGAG CAGGUGC(GA 3961 AA)GC-AGGU |CAUAGUGAU CCGGUGGUUC UG(AAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UGA--UACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GAAG 4141 U---A)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGUGGUAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|CG-CUG 4261 GAGAACU|GA -|GGGGGGC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG CAUCACUGGU GUUCGGGU|U GUCAU(GC-C A-)AUGGCA- CUGCCCGGUA 4381 GCU-AAAUGC GGAAGAGAUA AGUGCU(GAA AGCAUCUA)A GCACGAAACU UGCCCC|GAG 4441 AUGAGUUCUC C|CU|GACCC U(-UUA--)A GGGUC-CUG- AAGG|-AA|C GUUG-(AAGA 4501 CG-A)CGACG -UUGAUAG|G CCGG|GUGUG -UAAGCGCA- -(GCGA-)-- UGCGU|UG-A 4561 GCUA|A|CCG GUACUAAUG- AACCGUGAG| GCUUAA-CCU U-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS E.coli.C 4759 bp RNA RNA 11-JAN-191 DEFINITION Escherichia coli subsp. sub_strain MG1655, strain K-12 str. region from 81.5 to 84.5 minutes. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli subsp. sub_strain MG1655, strain K-12 str. region from 81.5 to 84.5 minutes. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: L10328 LOCUS ECOUW82 136254 bp ds-DNA BCT 08-SEP-1993 DEFINITION E. coli genomic region from 81.5 to 84.5 minutes. ACCESSION L10328 KEYWORDS deoxyuridinetriphosphatase; dfp gene; dut gene; formamidopyrimidine-DNA glycosylase; fpg gene; mutH gene; orotate phosphoribosyltransferase; pyrE gene; radC gene; ribosomal protein L28; ribosomal protein L33; rpmB gene; rpmG gene; ttk gene. SOURCE Escherichia coli (sub_strain MG1655, strain K-12) (library: lambda) DNA. ORGANISM Escherichia coli Prokaryotae; Gram-negative facultatively anaerobic rods; Enterobacteriaceae. rRNA 131193..132733 /gene="rrsC" /note="CG Site No. 187" /product="16S ribosomal RNA" misc_feature 132573..133107 /note="X12420; ECO16S23S(1..535)" misc_difference replace(132780,"a") /note="in M20398; `g' in X12420 and this sequence" tRNA 132819..132894 /gene="gltU" /standard_name="tgtC gene" /note="CG Site No. 679; part of rrnC operon" /anticodon=(pos:unspecified,aa:Glu) /product="transfer RNA-Glu" misc_difference replace(132836,"a") /note="in M20398; `g' in X12420 and this sequence" misc_structure 132871..133022 /note="predicted bend of 77 degrees" misc_difference replace(133018,"g") /note="in M20398; `a' in X12420 and this sequence" rRNA 133087..135993 /gene="rrlC" /note="CG Site No. 201; part of the rrnC operon" /product="23S ribosomal RNA" misc_feature 136086..>136254 /note="V00349 continues in M87049 (ECOUW85U)" rRNA 136086..136205 /gene="rrfC" /note="CG Site No. 208; part of the rrnC operon" /product="5S ribosomal RNA" misc_feature 136249..136254 /note="EcoRI site is 6 bp overlap with M87049 (ECOUW85U)" BASE COUNT 33568 a 35605 c 34347 g 32626 t 108 others ORIGIN BamHI site at 3833.658 kb in EcoMap5. BASE COUNT 766 a 637 c 907 g 593 t 1856 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- -------aGG UUAAGCGAC- --UAAGCGUA CACGGUGGAU 121 G|CCCUGG|C AGUCAG|AG| GC-GAUGAAG GA|CGUG(CU AA-UC-)U|- GCG-AUAAGC 181 GUCGGU|-AA GGU(G-AU-A UGA-)ACCGU UAUAAC-CGG CGAUU|UCCG AAUGGG(GAA 241 A)CCC|AGUG UGU-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----UUCG)- ACACACU-AU CA-UUAACU( 481 GA-AUCCA-- UA)GGU-UAA -U-G--AGG- C-GAAC|CG- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCC GAGGAAAAGA AAUC(-AACC --)GAGAU|U CC-CCCAGUA GC(GGCGA)G 601 CGA-ACG-GG GA-GCA-GCC CA-------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----gagcc ugaaucagua uguguguu-a guggaag-cg u-c(u-ggaa a)g-gcgcgc 781 |g(aua)caG GG(UGACAGC )CCCGU-Aca c-aaaaaugc aca-uauug- ----ugagcu 841 c--------- ---------- -----gauGA GUAGGGCGGG A(CACGUG-G UA)UCCUGUC 901 UGAAUAU-GG GaGG(GACCA U)CC-UCC-A AGGCUAA--- -AUACUCCUG ACUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGCGAAAA-G AACCCC(GGC GA-)GGGGA- 1021 -GUGAAA-AA GAACCUGAAA CCGU-GUACG UACAA-G-CA GUGGGAGCAC --GC------ 1081 --------(- ---uuag--) ---------- ----GC-GUG UGACUGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAU-AUUC- UGUAGC-AAG GUUAACC--( -GAAUA)--G 1201 G-GGAGCCGA AGG(GAAA-) CCGAGUCU(U AA-CU)GGGC GU-------- ---------- 1261 ---------- ------u-aa G-UUGCAGGG UAUA-GACCC GAAAC-CCG- GUGA-UCUAG 1321 CCAUGGG|CA GGUUGAAGGU UGGG(UAAC) AC-UAACUGG AGGACCGAAC C-GACUAAU( 1381 -GUUGAAAA) AUUAG|CGG- AUGAC-UUGU GGCUGGGGGU (-GAAAG)GC CAAUCAAACC 1441 GGGAGAUAGC UGGUUCUCCC CGAAAGCUAU (-UUAG)GUA GCGC|-CUCG UGAAU---U| 1501 -CAU|CUCCG G|GGGUAG|A GC-ACUGU-U UCGGCAA-GG |-GGGUC(AU CCC)GACUUA 1561 CCAACCCGAU -GCAAACUGC GAA-UA-|CC G-G-A-G--A AUGU---UA| UCA-CGGGAG 1621 ACACAC--GG C-GGGU(GCU AAC)GUCCGU -CGUG-AAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAGUC-AUGG -U-UAA-GUG ------GGAA ACGAUGUG-G 1741 GAAGGCCCA- GACAGCCAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG GU-----CGA GU-CGG-CC- -UGC|GCGGA AGAU-GUAA- 1861 CGGGGCU-AA ACCAU-G|C| ACCGAAGCU| GCGG|cagcg acgc---(uu au-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- gcguuguug- GG-UAGGGGA G|-----CGU 2221 U-CUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCUG-C 2341 GAAGGUG-U- G-CU(-GUGA -)GGC--AUG CUGG|AGGUA U-CAGAAGUG CGAAUGC-UG 2401 AC|AUA-AGU A--ACGAUAA AGCGGG(UGA AAAG)CCCGC U|CGCC-GGA AGACCAAGGG 2461 UUCCUG-UCC AACG-(UUAA U)CG|G-GGC AGGGUGAGU| CGA|C-CCCU AAGGCGAGGC 2521 C(GAAA)-G- GCGU-AGUCG AUGG-GAAAC AGG-(UU-AA UAUU)C-CUG U|AC|uu-g- 2581 gu-guu-acu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga a------ggg g--gga-cgg agaaggcua- uguu-g-|gc c-ggg(cg-- 2761 acgg-u-ugu --)cc-cggu -|uuaa---- ---------- ---gcgu-gu aggc------ 2821 -ugguuu-uc cagg(ca-aa -u-)cc|g-- gaaaaucaa- ---------- ggcu-gaggc 2881 gug-auga|c ga-|------ ------gssa c(-uacg--) gugcu----- ------gaag 2941 --caaca-aa ugcc-cug-| cuuccaggaa a-agccuc-u aagcauca-- ------gg-u 3001 -aacau--ca a|A|UCGUAC CCCAAACC(G ACACA)GG|U GG-UCAGGU- A-(GAGAA)U 3061 ACCAAGGCGC ||UUGAGAGA ACUCGGGUG- ---------- ----AAGGAA CUAGGCAAAA 3121 UGGUGCCGUA AC(-UUCG)G GAGAAGGCAC |GCUGAUaug -uaggug--- -----aagcg 3181 a(-cuugc)u cgug------ ---gagcug- aaAUCAG-U| C(GAA)GAUA CCAGCUG-GC 3241 UG|CAACU-- ---GU(UUAU UAAAA)ACAC AGCACUGUG| CAAACAC(GA AA------)G 3301 UGGACGU-AU ACGGUGUGA- CGCCUGCCCG GU|GCCG-GA A-GGUUAAUU GAUGGGGUCA 3361 GC-------- (G-CAA)--- --------GC GA-AGCUCUU GAUCGAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAU GA-UGGCCAG GCUGUCUCCA CCCGAGACUC 3541 A|GUGAAAUU |GAACUCG-C UG(UGAAGAU G)CAGUGUAC CCGCGGC-AA GACGGAAAGA 3601 CCCCGUGA|A CCU-UUACUA U|AGCUUGAC ACU|GAACAU UGAGCCUUGA UGUGUAGGAU 3661 AGGUGGGAGG CUUUGAAG-- UGUGGAC(GC CA)GUCUGCA UGGAGCCGAC -C-UUGAAAU 3721 ACCACC|CUU U-AAUGUUUG AUG-UUCUAA -CGUGGA--- -CCCG(--UG -AUC)-CGGG 3781 UUGCG-GACA GUGUCUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|UCCUC C(UAA-AGAG 3841 UAAC)GGAGG A|G|C|ACGA AGGUUGGC|U AAUCCUGG(U CGGACA)UCA GGAGGU-UA| 3901 GU(G|CAAUG )GCAUAAGCC AGCUUGACUG CGAGCG(UGA CGG)CGCGAG CAGGUGC(GA 3961 AA)GCUAGGU |CAUAGUGAU CCGGUGGUUC UG(AAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|CGGG|- AUAACAG|GC UGA--UACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GAGCU(GAAG 4141 U---A)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGUGGUAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|CG-CUG 4261 GAGAACU|GA -|GGGGGGC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG CAUCACUGGU GUUCGGGU|U GUCAU(GC-C A-)AUGGCA- CUGCCCGGUA 4381 GCU-AAAUGC GGAAGAGAUA AGUGCU(GAA AGCAUCUA)A GCACGAAACU UGCCCC|GAG 4441 AUGAGUUCUC C|CU|GACUC C(-UUUR-)A GRGUC-CUG- AAGG|-AA|C GUUG-(AAGA 4501 CG-A)CGACG -UUGAUAG|G CCGG|GUGUG -UAAGCGCA- -(GCGA-)-- UGCGU|UG-A 4561 GCUA|A|CCG GUACUAAUG- AACCGUGAG| GCUUAA-CCU U-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS E.coli.E 4759 bp RNA RNA 11-JAN-191 DEFINITION Escherichia coli subsp. region from 89.2 to 92.8 minutes str. sub_strain MG1655, strain K-12. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli subsp. region from 89.2 to 92.8 minutes str. sub_strain MG1655, strain K-12. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U00006 LOCUS ECOUW89 176195 bp ds-DNA BCT 17-DEC-1993 DEFINITION E. coli chromosomal region from 89.2 to 92.8 minutes. ACCESSION U00006 KEYWORDS . SOURCE Escherichia coli (sub_strain MG1655, strain K-12) (library: lambda) DNA. ORGANISM Escherichia coli Eubacteria; Gracilicutes; Scotobacteria; Facultatively anaerobic rods; Enterobacteriaceae; Escherichia. REFERENCE 1 (bases 1 to 176195) AUTHORS Blattner,F.R., Burland,V.D., Plunkett,G.,III, Sofia, H.J. and Daniels,D.L. TITLE Analysis of the Escherichia coli genome IV. DNA sequence of the region from 89.2 to 92.8 minutes JOURNAL Nucleic Acids Res. 21, 5408-5417 (1993) STANDARD full automatic COMMENT This sequence was determined as part of the E. coli Genome Project (Frederick R. Blattner, director) at the University of Wisconsin-Madison. Supported by award HG00301 from the NIH Human Genome Project. The entire sequence was independently determined from E. coli MG1655; overlaps and conflicts with other sequence determinations are annotated. The start of this entry overlaps the end of the entry ECOUW87 (L19201) by 93 bp. NOTE: An update was submitted on 25-OCT-1993, reflecting a correction to the hemE sequence. NCBI gi: 409785 FEATURES Location/Qualifiers source 1..176195 /organism="Escherichia coli" /strain="K-12" /sub_strain="MG1655" /sequenced_mol="DNA" /note="This sequence comprises the following lambda clones: EC18-126, EC14-54, EC21-52, EC17-24, EC17-203, EC19-105, EC18-208, EC18-110, EC17-200, EC18-33, EC30-262, EC30-41, EC30K637-2a, EC30K637-5, EC27-975, EC22-27; M13mp19 or Janus vectors were used for subcloning" many many lines deleleted. many many lines deleleted. rRNA 31901..33442 /gene="rrsB" /standard_name="16S rRNA of rrnB operon" /note="CG Site No. 188" /product="16S ribosomal RNA" tRNA 33614..33689 /gene="gltT" /standard_name="glutamate tRNA 2 of rrnB operon" /note="CG Site No. 680; alternate gene name tgtB" /product="glutamate transfer RNA 2" misc_structure 33666..33810 /note="predicted bend of 77 degrees" misc_difference 33760 /note="T in J10695; N in V00348; A here" rRNA 33883..36786 /gene="rrlB" /standard_name="23S rRNA of rrnB operon" /note="CG Site No. 202" /product="23S ribosomal RNA" misc_feature 36875..37000 /note="corresponds to M25630; ECORRB(1..126)" rRNA 36879..36998 /gene="rrfB" /standard_name="5S rRNA of rrnB operon" /note="CG Site No. 209" /product="5S ribosomal RNA" misc_feature 36999..39489 /note="corresponds to M10123; ECOBIRA(1..2491)" terminator 37003..37044 /note="putative" terminator 37175..37205 /note="putative" many many lines deleleted. many many lines deleleted. rRNA 73388..74929 /gene="rrsE" /standard_name="16S rRNA of rrnE operon" /note="CG Site No. 185" /product="16S ribosomal RNA" misc_difference 73413 /note="G in J01697, V00335; A here" tRNA 75015..75090 /gene="gltV" /standard_name="glutamate tRNA 2 of rrnE operon" /note="CG Site No. 678; alternate gene name tgtE" /product="glutamate transfer RNA 2" misc_structure 75098..75209 /note="predicted bend of 72 degrees" rRNA 75285..78188 /gene="rrlE" /standard_name="23S rRNA of rrnE operon" /note="CG Site No. 199" /product="23S ribosomal RNA" misc_feature 78282..79725 /note="corresponds to X02800; ECORRNE(1..1444)" rRNA 78282..78401 /gene="rrfE" /standard_name="5S rRNA of rrnE operon" /note="CG Site No. 206" /product="5S ribosomal RNA" terminator 78410..78441 /note="putative" many many lines deleleted. many many lines deleleted. BASE COUNT 762 a 639 c 912 g 591 t 1855 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGCGAC- --UAAGCGUA CACGGUGGAU 121 G|CCCUGG|C AGUCAG|AG| GC-GAUGAAG GA|CGUG(CU AA-UC-)U|- GCG-AUAAGC 181 GUCGGU|-AA GGU(G-AU-A UGA-)ACCGU UAUAAC-CGG CGAUU|UCCG AAUGGG(GAA 241 A)CCC|AGUG UGU-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----UUCG)- ACACACU-AU CA-UUAACU( 481 GA-AUCCA-- UA)GGU-UAA -U-G--AGG- C-GAAC|CG- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCC GAGGAAAAGA AAUC(-AACC --)GAGAU|U CC-CCCAGUA GC(GGCGA)G 601 CGA-ACG-GG GA-GCA-GCC CA-------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----gagcc ugaaucagug uguguguu-a guggaag-cg u-c(u-ggaa a)g-gcgcgc 781 |g(aua)caG GG(UGACAGC )CCCGU-Aca c-aaaaaugc aca-ugcug- ----ugagcu 841 c--------- ---------- -----gauGA GUAGGGCGGG A(CACGUG-G UA)UCCUGUC 901 UGAAUAU-GG G-GG(GACCA U)CC-UCC-A AGGCUAA--- -AUACUCCUG ACUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGCGAAAA-G AACCCC(GGC GA-)GGGGA- 1021 -GUGAAA-AA GAACCUGAAA CCGU-GUACG UACAA-G-CA GUGGGAGCAC --GC------ 1081 --------(- ---uuag--) ---------- ----GC-GUG UGACUGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAU-AUUC- UGUAGC-AAG GUUAACC--( -GAAUA)--G 1201 G-GGAGCCGA AGG(GAAA-) CCGAGUCU(U AA-CU)GGGC GU-------- ---------- 1261 ---------- ------u-aa G-UUGCAGGG UAUA-GACCC GAAAC-CCG- GUGA-UCUAG 1321 CCAUGGG|CA GGUUGAAGGU UGGG(UAAC) AC-UAACUGG AGGACCGAAC C-GACUAAU( 1381 -GUUGAAAA) AUUAG|CGG- AUGAC-UUGU GGCUGGGGGU (-GAAAG)GC CAAUCAAACC 1441 GGGAGAUAGC UGGUUCUCCC CGAAAGCUAU (-UUAG)GUA GCGC|-CUCG UGAAU---U| 1501 -CAU|CUCCG G|GGGUAG|A GC-ACUGU-U UCGGCAA-GG |-GGGUC(AU CCC)GACUUA 1561 CCAACCCGAU -GCAAACUGC GAA-UA-|CC G-G-A-G--A AUGU---UA| UCA-CGGGAG 1621 ACACAC--GG C-GGGU(GCU AAC)GUCCGU -CGUG-AAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAGUC-AUGG -U-UAA-GUG ------GGAA ACGAUGUG-G 1741 GAAGGCCCA- GACAGCCAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG GU-----CGA GU-CGG-CC- -UGC|GCGGA AGAU-GUAA- 1861 CGGGGCU-AA ACCAU-G|C| ACCGAAGCU| GCGG|cagcg acgc---(uu au-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- gcguuguug- GG-UAGGGGA G|-----CGU 2221 U-CUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCUG-C 2341 GAAGGUG-U- G-CU(-GUGA -)GGC--AUG CUGG|AGGUA U-CAGAAGUG CGAAUGC-UG 2401 AC|AUA-AGU A--ACGAUAA AGCGGG(UGA AAAG)CCCGC U|CGCC-GGA AGACCAAGGG 2461 UUCCUG-UCC AACG-(UUAA U)CG|G-GGC AGGGUGAGU| CGA|C-CCCU AAGGCGAGGC 2521 C(GAAA)-G- GCGU-AGUCG AUGG-GAAAC AGG-(UU-AA UAUU)C-CUG U|AC|uu-g- 2581 gu-guu-acu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga a------ggg g--gga-cgg agaaggcua- uguu-g-|gc c-ggg(cg-- 2761 acgg-u-ugu --)cc-cggu -|uuaa---- ---------- ---gcgu-gu aggc------ 2821 -ugguuu-uc cagg(ca-aa -u-)cc|g-- gaaaaucaa- ---------- ggcu-gaggc 2881 gug-auga|c ga-|------ ------ggca c(-uacg--) gugcu----- ------gaag 2941 --caaca-aa ugcc-cug-| cuuccaggaa a-agccuc-u aagcauca-- ------gg-u 3001 -aacau--ca a|A|UCGUAC CCCAAACC(G ACACA)GG|U GG-UCAGGU- A-(GAGAA)U 3061 ACCAAGGCGC ||UUGAGAGA ACUCGGGUG- ---------- ----AAGGAA CUAGGCAAAA 3121 UGGUGCCGUA AC(-UUCG)G GAGAAGGCAC |GCUGAUaug -uaggug--- -----agguc 3181 c(-cucgc)g gaug------ ---gagcug- aaAUCAG-U| C(GAA)GAUA CCAGCUG-GC 3241 UG|CAACU-- ---GU(UUAU UAAAA)ACAC AGCACUGUG| CAAACAC(GA AA------)G 3301 UGGACGU-AU ACGGUGUGA- CGCCUGCCCG GU|GCCG-GA A-GGUUAAUU GAUGGGGUUA 3361 GC-------- (G-CAA)--- --------GC GA-AGCUCUU GAUCGAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAU GA-UGGCCAG GCUGUCUCCA CCCGAGACUC 3541 A|GUGAAAUU |GAACUCG-C UG(UGAAGAU G)CAGUGUAC CCGCGGC-AA GACGGAAAGA 3601 CCCCGUGA|A CCU-UUACUA U|AGCUUGAC ACU|GAACAU UGAGCCUUGA UGUGUAGGAU 3661 AGGUGGGAGG CUUUGAAG-- UGUGGAC(GC CA)GUCUGCA UGGAGCCGAC -C-UUGAAAU 3721 ACCACC|CUU U-AAUGUUUG AUG-UUCUAA -CGUUGA--- -CCCG(--UA -AUC)-CGGG 3781 UUGCG-GACA GUGUCUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|UCCUC C(UAA-AGAG 3841 UAAC)GGAGG A|G|C|ACGA AGGUUGGC|U AAUCCUGG(U CGGACA)UCA GGAGGU-UA| 3901 GU(G|CAAUG )GCAUAAGCC AGCUUGACUG CGAGCG(UGA CGG)CGCGAG CAGGUGC(GA 3961 AA)GC-AGGU |CAUAGUGAU CCGGUGGUUC UG(AAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UGA--UACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GAAG 4141 U---A)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGUGGUAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|CG-CUG 4261 GAGAACU|GA -|GGGGGGC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG CAUCACUGGU GUUCGGGU|U GUCAU(GC-C A-)AUGGCA- CUGCCCGGUA 4381 GCU-AAAUGC GGAAGAGAUA AGUGCU(GAA AGCAUCUA)A GCACGAAACU UGCCCC|GAG 4441 AUGAGUUCUC C|CU|GACUC C(-UUG--)A GAGUC-CUG- AAGG|-AA|C GUUG-(AAGA 4501 CG-A)CGACG -UUGAUAG|G CCGG|GUGUG -UAAGCGCA- -(GCGA-)-- UGCGU|UG-A 4561 GCUA|A|CCG GUACUAAUG- AACCGUGAG| GCUUAA-CCU U-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS E.coli.H 4759 bp RNA RNA 11-JAN-191 DEFINITION Escherichia coli subsp. strain K12. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli subsp. strain K12. ORGANISM Escherichia coli. REFERENCE 1 (bases 1 to 2906) AUTHORS Nakayashiki,T., Adachi,T., Miki,T. and Inokuchi,H. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: D12649 LOCUS ECORRNH 4481 bp ds-DNA BCT 23-OCT-1992 DEFINITION E.coli rrnH gene for rRNAs and tRNAs. ACCESSION D12649 KEYWORDS 16S rRNA; 23S rRNA; 5S rRNA; tRNA-Ala; tRNA-Ile. SOURCE Escherichia coli (strain K12) (library: Kohara) DNA. ORGANISM Escherichia coli Prokaryotae; Bacteria; Gracilicutes; Scotobacteria; Facultatively anaerobic rods; Enterobacteriaceae. REFERENCE 1 (bases 1 to 4481) AUTHORS Nakayashiki,T., Adachi,T., Miki,T. and Inokuchi,H. TITLE Nucleotide sequence of the rrnH gene from Escherichia coli JOURNAL Unpublished (1992) STANDARD full automatic COMMENT Submitted (17-JUL-1992) to DDBJ by: Toru Nakayashiki Dept. of Biophysics Faculty of Science, Kyoto University Sakyo-ku, Kyoto 606-01 Japan Phone: 075-753-4200 Fax: 075-791-0271. NCBI gi: 216643 FEATURES Location/Qualifiers source 1..4481 /organism="Escherichia coli" rRNA <1..869 /gene="rrnH" /product="16S rRNA" tRNA 938..1014 /gene="rrnH" /product="tRNA-Ile" tRNA 1057..1132 /gene="rrnH" /product="tRNA-Ala" rRNA 1316..4219 /gene="rrnH" /product="23S rRNA" rRNA 4313..4432 /gene="rrnH" /product="5S rRNA" BASE COUNT 1179 a 992 c 1365 g 945 t ORIGIN BASE COUNT 764 a 635 c 911 g 594 t 1855 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGCGAC- --UAAGCGUA CACGGUGGAU 121 G|CCCUGG|C AGUCAG|AG| GC-GAUGAAG GA|CGUG(CU AA-UC-)U|- GCG-AUAAGC 181 GUCGGU|-AA GGU(G-AU-A UGA-)ACCGU UAUAAC-CGG CGAUU|UCCG AAUGGG(GAA 241 A)CCC|AGUG UGU-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----UUCG)- ACACACU-AU CA-UUAACU( 481 GA-AUCCA-- UA)GGU-UAA -U-G--AGG- C-GAAC|CG- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCC GAGGAAAAGA AAUC(-AACC --)GAGAU|U CC-CCCAGUA GC(GGCGA)G 601 CGA-ACG-GG GA-GGA-GCC CA-------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----gagcc ugaaucagug uguguguu-a guggaag-cg u-c(u-ggaa a)g-gcgcgc 781 |g(aua)caG GG(UGACAGC )CCCGU-Aca c-aaaaaugc aca-ugcug- ----ugagcu 841 c--------- ---------- -----gauGA GUAGGGCGGG A(CACGUG-G UA)UCCUGUC 901 UGAAUAU-GG G-GG(GACCA U)CC-UCC-A AGGCUAA--- -AUACUCCUG ACUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGCGAAAA-G AACCCC(GGC GA-)GGGGA- 1021 -GUGAAA-AA GAACCUGAAA CCGU-GUACG UACAA-G-CA GUGGGAGCAU --GC------ 1081 --------(- ---uuag--) ---------- ----GC-GUG UGACUGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAU-AUUC- UGUAGC-AAG GUUAACC--( -GAAUA)--G 1201 G-GGAGCCGA AGG(GAAA-) CCGAGUCU(U AA-CU)GGGC GU-------- ---------- 1261 ---------- ------u-aa G-UUGCAGGG UAUA-GACCC GAAAC-CCG- GUGA-UCUAG 1321 CCAUGGG|CA GGUUGAAGGU UGGG(UAAC) AC-UAACUGG AGGACCGAAC C-GACUAAU( 1381 -GUUGAAAA) AUUAG|CGG- AUGAC-UUGU GGCUGGGGGU (-GAAAG)GC CAAUCAAACC 1441 GGGAGAUAGC UGGUUCUCCC CGAAAGCUAU (-UUAG)GUA GCGC|-CUCG UGAAC---U| 1501 -CAU|CUCCG G|GGGUAG|A GC-ACUGU-U UCGGCAA-GG |-GGGUC(AU CCC)GACUUA 1561 CCAACCCGAU -GCAAACUGC GAA-UA-|CC G-G-A-G--A AUGU---UA| UCA-CGGGAG 1621 ACACAC--GG C-GGGU(GCU AAC)GUCCGU -CGUG-AAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAGUC-AUGG -U-UAA-GUG ------GGAA ACGAUGUG-G 1741 GAAGGCCCA- GACAGCCAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG GU-----CGA GU-CGG-CC- -UGC|GCGGA AGAU-GUAA- 1861 CGGGGCU-AA ACCAU-G|C| ACCGAAGCU| GCGG|cagcg acgc---(uu au-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- gcguuguug- GG-UAGGGGA G|-----CGU 2221 U-CUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCUG-U 2341 GAAGGUG-U- A-CU(-GUGA -)GGU--AUG CUGG|AGGUA U-CAGAAGUG CGAAUGC-UG 2401 AC|AUA-AGU A--ACGAUAA AGCGGG(UGA AAAG)CCCGC U|CGCC-GGA AGACCAAGGG 2461 UUCCUG-UCC AACG-(UUAA U)CG|G-GGC AGGGUGAGU| CGA|C-CCCU AAGGCGAGGC 2521 C(GAAA)-G- GCGU-AGUCG AUGG-GAAAC AGG-(UU-AA UAUU)C-CUG U|AC|uu-g- 2581 gu-guu-acu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga a------ggg g--gga-cgg agaaggcua- uguu-g-|gc c-ggg(cg-- 2761 acgg-u-ugu --)cc-cggu -|uuaa---- ---------- ---gcgu-gu aggc------ 2821 -ugguuu-uc cagg(ca-aa -u-)cc|g-- gaaaaucaa- ---------- ggcu-gaggc 2881 gug-auga|c ga-|------ ------ggca c(-uacg--) gugcu----- ------gaag 2941 --caaca-aa ugcc-cug-| cuuccaggaa a-agccuc-u aagcauca-- ------gg-u 3001 -aacau--ca a|A|UCGUAC CCCAAACC(G ACACA)GG|U GG-UCAGGU- A-(GAGAA)U 3061 ACCAAGGCGC ||UUGAGAGA ACUCGGGUG- ---------- ----AAGGAA CUAGGCAAAA 3121 UGGUGCCGUA AC(-UUCG)G GAGAAGGCAC |GCUGAUaug -uaggug--- -----aagcg 3181 a(-cuugc)u cgug------ ---gagcug- aaAUCAG-U| C(GAA)GAUA CCAGCUG-GC 3241 UG|CAACU-- ---GU(UUAU UAAAA)ACAC AGCACUGUG| CAAACAC(GA AA------)G 3301 UGGACGU-AU ACGGUGUGA- CGCCUGCCCG GU|GCCG-GA A-GGUUAAUU GAUGGGGUUA 3361 GC-------- (G-CAA)--- --------GC GA-AGCUCUU GAUCGAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAU GA-UGGCCAG GCUGUCUCCA CCCGAGACUC 3541 A|GUGAAAUU |GAACUCG-C UG(UGAAGAU G)CAGUGUAC CCGCGGC-AA GACGGAAAGA 3601 CCCCGUGA|A CCU-UUACUA U|AGCUUGAC ACU|GAACAU UGAGCCUUGA UGUGUAGGAU 3661 AGGUGGGAGG CUUUGAAG-- UGUGGAC(GC CA)GUCUGCA UGGAGCCGAC -C-UUGAAAU 3721 ACCACC|CUU U-AAUGUUUG AUG-UUCUAA -CGUUGA--- -CCCG(--UA -AUC)-CGGG 3781 UUGCG-GACA GUGUCUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|UCCUC C(UAA-AGAG 3841 UAAC)GGAGG A|G|C|ACGA AGGUUGGC|U AAUCCUGG(U CGGACA)UCA GGAGGU-UA| 3901 GU(G|CAAUG )GCAUAAGCC AGCUUGACUG CGAGCG(UGA CGG)CGCGAG CAGGUGC(GA 3961 AA)GC-AGGU |CAUAGUGAU CCGGUGGUUC UG(AAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UGA--UACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GAAG 4141 U---A)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGUGGUAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|CG-CUG 4261 GAGAACU|GA -|GGGGGGC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG CAUCACUGGU GUUCGGGU|U GUCAU(GC-C A-)AUGGCA- CUGCCCGGUA 4381 GCU-AAAUGC GGAAGAGAUA AGUGCU(GAA AGCAUCUA)A GCACGAAACU UGCCCC|GAG 4441 AUGAGUUCUC C|CU|GACUC C(-UUG--)A GAGUC-CUG- AAGG|-AA|C GUUG-(AAGA 4501 CG-A)CGACG -UUGAUAG|G CCGG|GUGUG -UAAGCGCA- -(GCGA-)-- UGCGU|UG-A 4561 GCUA|A|CCG GUACUAAUG- AACCGUGAG| GCUUAA-CCU U-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.freundii 4759 bp RNA RNA 22-JUL-1998 DEFINITION Citrobacter freundii.; . ACCESSION U77928 KEYWORDS . SOURCE Citrobacter freundii. ORGANISM Citrobacter freundii. REFERENCE 1 (bases 1 to 2906) AUTHORS Christensen,H., Nordentoft,S. and Olsen,J.E. TITLE Phylogenetic relationships of Salmonella based on rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 48, 605-610 (1998) STANDARD No information REFERENCE 2 (bases 1 to 2906) AUTHORS Christensen,H. TITLE Direct Submission JOURNAL Submitted (12-NOV-1996) Veterinary Microbiology, Royal Veterinary and Agricultural University, Bulowsvej 13, Frederiksberg 1870, Denmark STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U77928 BASE COUNT 771 a 619 c 899 g 607 t 1863 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGCGAC- --UAAGSGUA CACGGUGGAU 121 G|CCCUGG|C AGUCAG|AG| GC-GAUGAAG GA|CGUG(CU AA-UC-)U|- GCG-AUAAGC 181 GUCGGU|-AA GGU(G-AU-A UGA-)ACCGU UAUAAC-CGG CGAUU|UCCG AAUGGG(GAA 241 A)CCC|AGUG UGU-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----UUCG)- ACACACU-AU CA-UUAACG( 481 UG-AUACA-- UA)GCG-UAA -U-G--AAG- C-gaAC|CG- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCC GAGGAAAAGA AAUC(-AACC --)GAGAU|U CC-CCCAGUA GC(GGCGA)G 601 CGA-ACG-GG GA-GCA-GCC CA-------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----gaguc ugaaucagcu uguguguu-a gugGAAc-gg u-c(u-ggaa a)g-uccgac 781 |g(gua)cAG GG(UGAYAGU )CCCGU-Aca c-aaaaaugc aca-gguug- ----ugaacu 841 c--------- ---------- -----gaaGA GUAGGGCGGG A(CACGUG-G UA)UCCUGUC 901 UGAAUAU-GG G-GG(GACCA U)CC-UCC-A AGGCUAA--- -AUACUCCUG ACUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGCGAAAA-G AACCCC(GGC GA-)GGGGA- 1021 -GUGAAA-AA GAACCUGAAA CCGU-GUACG UACAA-G-CA GUGGGAGCCU --a------- 1081 --------(- --cuugu--) ---------- -----u-AGG UGACUGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAU-AUUC- UGUAGC-AAG GUUAACC--( -GAAUA)--G 1201 G-GGAGCCGA AGG(GAAA-) CCGAGUCU(U AA-CU)GGGC GU-------- ---------- 1261 ---------- ------u-aa G-UUGCAGGG UAUA-GACCC GAAAC-CCG- GUGA-UCUAG 1321 CCAUGGG|CA GGUUGAAGGU UGGG(UAAC) AC-UAACUGG AGGACCGAAC C-GACUAAU( 1381 -GUUGAAAA) AUUAG|CGG- AUGAC-UUGU GGCUGGGGGU (-GAAAG)GC CAAUCAAACC 1441 GGGAGAUAGC UGGUUCUCCC CGAAAGCUAU (-UUAG)GUA GCGC|-CUCG UGAAC---U| 1501 -CAU|CUUCG G|GGGUAG|A GC-ACUGU-U UCGGCUA-GG |-GGGUC(AU CCC)GACUUA 1561 CCAACCCGAU -GCAAACUGC GAA-UA-|CC G-A-A-G--A AUGU---UA| UCA-CGGGAG 1621 ACACAC--GG C-GGGU(GCU AAC)GUCCGU -CGUG-AAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAGUC-ACAG -U-UAA-GUG ------GGAA ACGAUGUG-G 1741 GAAGGCACA- GACAGCCAGG AUGUUGGC(U UAGAAGCA)G CCND-NDU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG GU-----CGA GU-CGG-CC- -UGC|GCGGA AGAU-GUAA- 1861 CGGGGCU-AA ACUGU-G|C| ACCGAAGCU| GCGG|cagcg acac---(uu au-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- guguuguug- GG-UAGGGGA G|-----CGU 2221 U-CUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCGU-U 2341 GAAGGUG-U- G-CU(-GUGA -)GGC--AUG CUGG|AGGUA U-CAGAAGUG CGAAUGC-UG 2401 AC|AUA-AGU A--ACGAUAA UGCGGG(UGA AAAA)CCCGC A|CGCC-GGA AGACCAAGGG 2461 UUCCUG-UCC AACG-(UUAA U)CG|G-GGC AGGGUGAGU| CGA|C-CCCU AAGGCGAGGC 2521 C(GAAA)-G- GCGU-AGUCG AUGG-GAAAC AGG-(UU-AA UAUU)C-CUG U|AC|uu-g- 2581 gu-guu-acu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga a------ggg g--gga-cgg agaaggcua- uguu-a-|gc c-ggg(cg-- 2761 acgg-u-ugu --)cc-cggu -|uuaa---- ---------- ---gcau-gu aggc------ 2821 -ggaggu-uc cagg(ua-aa -u-)cc|g-- guaccuuuuu aa-------- cgcu-gaggu 2881 gug-auga|c ga-|------ ------ggca c(-uacg--) gugcu----- ------gaag 2941 --uaaca-aa ugcc-cug-| cuuccaggaa a-agccuc-u aagcauca-- ------gg-u 3001 -aacac--ga a|A|UCGUAC CCCAAACC(G ACACA)GG|U GG-UCAGGU- A-(GAGAA)U 3061 ACCAAGGCGC ||UUGAGAGA ACUCGGGUG- ---------- ----AAGGAA CUAGGCAAAA 3121 UGGUGCCGUA AC(-UUCG)G GAGAAGGCAC |GCUGAUaug -uaggug--- -----aagug 3181 g(-uuuac)u caug------ ---gagcug- aaAUCAG-U| C(GAA)GAUA CCAGCUG-GC 3241 UG|CAACU-- ---GU(UUAU UAAAA)ACAC AGCACUGUG| CAAACAC(GA AA------)G 3301 UGGACGU-AU ACGGUGUGA- CGCCUGCCCG GU|GCCG-GA A-GGUUAAUU GAUGGGGUUA 3361 UC-------- (G-UAA)--- --------GA GA-AGCUCUU GAUCGAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAU GA-UGGCCAG GCUGUCUCCA CCCGAGACUC 3541 A|GUGAAAUU |GAACUCG-C UG(UGAAGAU G)CAGUGUAC CCGCGGC-AA GACGGAAAGA 3601 CCCCGUGA|A CCU-UUACUA U|AGCUUGAC ACU|GAACAC UGGUCCUUGA UGUGUAGGAU 3661 AGGUGGGAGG CUUUGAAG-- UGUGGAC(GC CA)GUCUGCA UGGAGCCAAC -C-UUGAAAU 3721 ACCACC|CUU U-AAUGGCUG GUG-UUCUAA -CGUGGA--- -CCCG(--UU -ACC)-CGGG 3781 UUGCG-GACA GUGUCUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|UCCUC C(UAA-AGAG 3841 UAAC)GGAGG A|G|C|ACGA AGGUUAGC|U AAUCCUGG(U CGGACA)UCA GGAGGU-UA| 3901 GU(G|CAAAG )GCAUAAGCU AGCUUGACUG CGAGAG(UGA CGG)CUCGAG CAGGUGC(GA 3961 AA)GC-AGGU |CUUAGUGAU CCGGUGGUUC UG(AAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UGA--UACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GAAG 4141 U---A)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGUGGUAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|CG-CUG 4261 GAGAAUU|GA -|GGGGGGC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG CAUCACUGGU GUUCGGGU|U GUCAU(GC-C A-)AUGGCA- UUGCCCGGUA 4381 GCU-AAAUGC GGAAGAGAUA AGUGCU(GAA AGCAUCUA)A GCACGAAACU UGCCCC|GAG 4441 AUGAGUUCUC C|CU|GAGAC U(-AUA--)A GUCUC-CUG- AAGG|-AA|C GUUG-(AAGA 4501 CG-A)CGACG -UUGAUAG|G UCGG|GUGUG -UAAGYGYA- -(GCGA-)-- URCRU|UG-A 4561 GCUA|A|CCG GUACUAAUG- AACCGUGAG| GCUUAA-CCU U-------|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS K.pneumoni 4759 bp RNA RNA 03-JUL-1997 DEFINITION Klebsiella pneumoniae.; 23S ribosomal RNA; 23S rRNA gene. ACCESSION X87284 KEYWORDS 23S ribosomal RNA; 23S rRNA gene. SOURCE Klebsiella pneumoniae. ORGANISM Klebsiella pneumoniae. REFERENCE 1 (bases 1 to 2903) AUTHORS ,R., Weizenegger,M. and Schleifer,K.H. Ludwig,W., Rossello-Mora,R., Aznar,R., Klugbauer,S., Spring,S ., Reetz,K., Beimfohr,C., Brockmann,E., Kirchhof,G., Dorn,S., Bachleitner,M., Klugbauer,N., Springer,N., Lane,D., Nietupsky TITLE proteobacteria Comparative sequence analysis of 23S rRNA from JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2903) AUTHORS Ludwig,W. TITLE Direct Submission JOURNAL Submitted (18-MAY-1995) W. Ludwig, Lehrstuhl fuer Mikrobiologie, Technische Universitaet Muenchen, Muenchen, FRG STANDARD No information REFERENCE 3 (bases 1 to 2903) AUTHORS Ludwig,W., Rossello-Mora,R., Aznar,R., Klugbauer,S., Spring,S., Reetz,K., Beimfohr,C., Brockmann,E., Kirchhof,G. , Dorn,S., Bachleitner,M., Klugbauer,N., Springer,N., Lane, D., Nietupsky,R., Weizenegger,M. and Schleifer,K.H. TITLE Comparative sequence analysis of 23S rRNA from proteobacteria JOURNAL Syst. Appl. Microbiol. 18, 164-188 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X87284 BASE COUNT 762 a 637 c 908 g 596 t 1856 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------gg uuaAGCGAC- --UAAGCGUA CACGGUGGAU 121 G|CCCUGG|C AGUCAG|AG| GC-GAUGAAG GA|CGUG(CU AA-UC-)U|- GCG-AAAAGC 181 GUCGGU|-AA GGU(G-AU-A UGA-)ACCGU UAuaac-cGG CGAUG|UCCG AAUGGG(GAA 241 A)CCC|agug caa-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----uucg)- uugcacu-au cg-uuaacu( 481 ga-auaca-- ua)ggu-uaa -c-g--agg- c-gaac|CG- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCC GAGGAAAAGA AAUC(-AACC --)GAGAU|U CC-CCCAGUA GC(GGCGA)G 601 CGA-ACG-GG GA-GCA-GCC ---------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---cagaguc ugaaucagcu uguguguu-a gugGAAc-gg u-c(u-ggaa a)g-uccgac 781 |g(gua)caG GG(UGAUAGU )CCCGU-Aca c-caaaaugc acaggcug-- ----ugaacu 841 c--------- ---------- -----gaaGA GUAGGGCGGG A(CACGUG-G UA)UCCUGUC 901 UGAAUAU-GG G-GG(GACCA U)CC-UCC-A AGGCUAA--- -AUACUCCUG ACUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGCGAAAA-G AACCCC(GGC GA-)GGGGA- 1021 -GUGAAA-AA GAACCUGAAA CCGU-GUACG UACAA-G-CA GUGGGAGCac --c------- 1081 --------(- ---uucg--) ---------- -----g-guG UGACUGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAU-AUUC- UGUAGC-AAG GUUAACC--( -GUAUA)--G 1201 G-GGAGCCGC AGG(GAAA-) CCGAGUCU(U AA-CU)GGGC GU-------- ---------- 1261 ---------- ------u-aa g-UUGCAGGG UAUA-GACCC GAAAC-CCG- GUGA-UCUAG 1321 CCAUGGG|CA GGUUGAAGGU UGGG(UAAC) AC-UAACUGG AGGACCGAAC C-GACUAAU( 1381 -GUUGAAAA) AUUAG|CGG- AUGAC-UUGU GGCUGGGGGU (-GAAAG)GC CAAUCAAACC 1441 GGGAGAUAGC UGGUUCUCCC CGAAAGCUAU (-UUAG)GUA GCGC|-CUCG UGAAC---U| 1501 -CAU|CUUCG G|GGGUAG|A GC-ACUGU-U UCGGCUA-GG |-GGGUC(AU CCC)GACUUA 1561 CCAACCCGAU -GCAAACUAC GAA-UA-|CC G-A-A-G--A augu---ua| uca-cgGGAG 1621 ACACAC--GG C-GGGU(GCU AAC)GUCCGU -CGUG-AAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAGUC-AUGG -U-UAA-GUG ------GGAA ACGAUGUG-G 1741 GAAGGCACA- GACAGCCAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG GU-----CGA GU-CGG-CC- -UGC|GCGGA AGAU-GUAA- 1861 CGGGGCU-AA ACCAU-G|C| ACCGAAGCU| GCGG|cagcg acac---(ua u--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- guguuguug- GG-UAGGGGA G|-----CGU 2221 U-CUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCUG-C 2341 GAAGGUG-U- G-CU(-GUGA -)GGC--AUG CUGG|AGGUA U-CAGAAGUG CGAAUGC-UG 2401 AC|AUA-AGU A--ACGAUAA AGCGGG(UGA AAAG)CCCGC U|CGCC-GGA AGACCAAGGG 2461 UUCCUG-UCC AACG-(UUAA U)CG|G-GGC AGGGUGAGU| CGA|C-CCCU AAGGCGAGGC 2521 C(GAAA)-G- GCGU-AGUCG AUGG-GAAAC AGG-(UU-AA UAUU)C-CUG U|AC|uu-g- 2581 gu-guu-acu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga a------ggg g--gga-cgg agaaggcua- uguu-a-|gc c-ggg(cg-- 2761 acgg-u-ugu --)cc-cggu -|uuaa---- ---------- ---gcau-gu aggc------ 2821 -ugguug-uc cagg(ca-aa -u-)cc|g-- gauaaucaa- ---------- ggcu-gaggu 2881 gug-auga|c ga-|------ ------ggca c(-uacg--) gugcu----- ------gaag 2941 --uaaca-aa ugcu-cug-| cuuccaggaa a-agccuc-u aagcauca-- ------gg-u 3001 -aacau--ca a|A|UCGUAC CCCAAACC(G ACACA)GG|U GG-UCAGGU- A-(GAGAA)U 3061 ACCAAGGCGC ||UUGAGAUA ACUCGGGUG- ---------- ----AAGGAA CUAGGCAAAA 3121 UGGUGCCGUA AC(-UUCG)G GAGAAGGCAC |gcuggugug -uaggug--- -----aagcc 3181 c(-cugcc)g ggugg----- ----agcug- agaccag-U| C(GAA)GAUA CCAGCUG-GC 3241 UG|CAACU-- ---GU(UUAU UAAAA)ACAC AGCACUGUG| CAAACAC(GA AA------)G 3301 UGGACGU-AU ACGGUGUGA- CGCCUGCCCG GU|GCCG-GA A-GGUUAAUU GAUGGGGUUA 3361 UC-------- (CGUAA)g-- --------ga GA-AGCUCUU GAUCGAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAU GA-UGGCCAG GCUGUCUCCA CCCGAGACUC 3541 A|GUGAAAUU |GAACUCG-C UG(UGAAGAU G)CAGUGUAC CCGCGGC-AA GACGGAAAGA 3601 CCCCGUGA|A CCU-UUACUA U|AGCUUGAC ACU|GAACAU UGAGCCUUGA UGUGUAGGAU 3661 AGGUGGGAGG CUUUGAAG-- CGUGGAC(GC CA)GUCUGCG UGGAGCCAAC -C-UUGAAAU 3721 ACCACC|CUU U-AAUGUUUG AUG-UUCUAA -CGUUGG--- -CCCC(--UC -ACC)-GGGG 3781 UUGCG-GACA GUGUCUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|UCCUC C(CAA-AGCG 3841 UAAC)GGAGG A|G|C|ACGA AGGUUAGC|U AAUCCUGG(U CGGACA)UCA GGAGGU-UA| 3901 GU(G|CAAUG )GCAUAAGCU AGCUUGACUG CGAGCG(UGA CGG)CGCGAG CAGGUGC(GA 3961 AA)GC-AGGU |CAUAGUGAU CCGGUGGUUC UG(AAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UGA--UACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GAAG 4141 U---A)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGUGGUAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|CG-CUG 4261 GAGAAUU|GA -|GGGGGGC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG CAUCACUGGU GUUCGGGU|U GUCAU(GC-C A-)AUGGCA- CUGCCCGGUA 4381 GCU-AAAUGC GGAAGAGAUA AGUGCU(GAA AGCAUCUA)A GCACGAAACU UGCCCC|GAG 4441 AUGAGUUCUC C|CU|GAGAC U(-UUA--)A GUCUC-CUG- AAGG|-AA|C GUUG-(AAGA 4501 CG-A)CGACG -UUGAUAG|G CCGG|GUGUG -UAAGCGCA- -(GCGA-)-- UGCGU|UG-A 4561 GCUA|A|CCG GUACUAAUG- AACCGUGAG| GCUUAA-Ccu u-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS Y.enteroco 4759 bp RNA RNA 22-JUL-1998 DEFINITION Yersinia enterocolitica.; . ACCESSION U77925 KEYWORDS . SOURCE Yersinia enterocolitica. ORGANISM Yersinia enterocolitica. REFERENCE 1 (bases 1 to 2906) AUTHORS Christensen,H., Nordentoft,S. and Olsen,J.E. TITLE Phylogenetic relationships of Salmonella based on rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 48, 605-610 (1998) STANDARD No information REFERENCE 2 (bases 1 to 2906) AUTHORS Christensen,H. TITLE Direct Submission JOURNAL Submitted (12-NOV-1996) Veterinary Microbiology, Royal Veterinary and Agricultural University, Bulowsvej 13, Frederiksberg 1870, Denmark STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U77925 BASE COUNT 772 a 620 c 892 g 587 t 1888 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGCGAC- --CAAGCGUA CACGGUGGAU 121 G|CCUAGG|C AGUCAG|AG| GC-GAUGAAG GA|CGUG(CU AA-UC-)U|- GCG-AAAAGC 181 GUCGGU|-AA GGU(G-AU-A UGA-)ACCGU UAUAAC-CGA CGAUA|CCCG AAUGGG(GAA 241 A)CCC|AGUG CAA-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----UUCG)- UUGCACU-AU UG-CAUGGU( 481 GA-AUACA-- UA)GCC-AUG -C-A--AGG- C-gaAC|CG- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCC GAGGAAAAGA AAUC(-AACC --)GAGAU|U CC-CCCAGUA GC(GGCGA)G 601 CGA-ACG-GG GA-GGA-GCC CA-------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----GAACC UGAAUCAGCG UAUGUGUU-A GUGGAAG-CG U-C(U-ggaa a)G-UCGCAC 781 |G(GUA)CAG GG(UGAUAGU )CCCGU-Aca c-aaaaaugc aua-uguug- ----ugaguu 841 c--------- ---------- -----gauGA GUAGGGCGGG A(CACGUG-A CA)UCCUGUC 901 UGAAUAU-GG G-GG(GACCA U)CC-UCC-A AGGCUAA--- -AUACUCCUG ACUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGCGAAAA-G AACCCC(GGC GA-)GGGGA- 1021 -GUGAAA-CA GAACCUGAAA CCGU-GUACG UACAA-G-CA GUGGGAGCAC --c------- 1081 --------(- ---uucgu-) ---------- -----G-GUG UGACUGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAU-AUUU- UGUAGC-AAG GUUAACC--( -GAAUA)--G 1201 G-GGAGCCGU AGG(GAAA-) CCGAGUCU(U AA-CU)GGGC GA-------- ---------- 1261 ---------- ------a-ua G-UUGCAAGG UAUA-GACCC GAAAC-CCG- GUGA-UCUAG 1321 CCAUGGG|CA GGUUGAAGGU UGGG(UAAC) AC-UAACUGG AGGACCGAAC C-GACUAAU( 1381 -GUUGAAAA) AUUAG|CGG- AUGAC-UUGU GGCUGGGGGU (-GAAAG)GC CAAUCAAACC 1441 GGGAGAUAGC UGGUUCUCCC CGAAAGCUAU (-UUAG)GUA GCGC|-CUCG UGAAC---U| 1501 -CAU|CUUCG G|GGGUAG|A GC-ACUGU-U UCGGCUA-GG |-GGGUC(AU CCC)GACUUA 1561 CCAAACCGAU -GCAAACUCC GAA-UA-|CC G-A-A-G--A AUGU---UA| UCA-CGGGAG 1621 ACACAC--GG C-GGGU(GCU AAC)GUCCGU -CGUG-AAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAGUC-AUGG -U-UAA-GUG ------GGAA ACGAUGUG-G 1741 GAAGGCACA- GACAGCCAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG GU-----CGA GU-CGG-CC- -UGC|GCGGA AGAU-GUAA- 1861 CGGGGCU-AA ACCAU-G|C| ACCGAAGCU| GCGG|cagcg nnnn---(nn nn-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- nnnnnnnnn- NN-NNGGGGA G|-----CGU 2221 U-CUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCGU-U 2341 GAAGGUG-A- C-CU(-GUGA -)GGG--UUG CUGG|AGGUA U-CAGAAGUG CGAAUGC-UG 2401 AC|AUA-AGU A--ACGAUAA UGCGGG(UGA AAAA)CCCGC A|CGCC-GGA AGACCAAGGG 2461 UUCCUG-UCC AACG-(UUAA U)CG|G-GGC AGGGUGAGU| CGA|C-CCCU AAGGCGAGGC 2521 U(GAAA)-G- GCGU-AGUCG AUGG-GAAAC AGG-(UU-AA UAUU)C-CUG U|AC|uu-g- 2581 gu-guu-acu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga a------ggg g--gga-cgg agaaggcua- ugcu-a-|gc c-ggg(cg-- 2761 acgg-u-ugu --)cc-cggu -|uuaa---- ---------- ---gcau-gu aggc------ 2821 -ggagug-ac cagg(ua-aa -u-)cc|g-- guugcuuauc aa-------- cgcu-gaggu 2881 gug-auga|c ga-|------ ------guca c(-uacg--) gugau----- ------gaag 2941 --uaguu-ga ugcc-aug-| cuuccaggaa a-agccuc-u aagcauca-- ------gg-u 3001 -aacau--ga a|A|UCGUAC CCCAAACC(G ACACA)GG|U GG-UCAGGU- A-(GAGAA)U 3061 ACUCAGGCGC ||UUGAGAGA ACUCGGGUG- ---------- ----AAGGAA CUAGGCAAAA 3121 UGGUGCCGUA AC(-UUCG)G GAGAAGGCAC |GCUGACacg -uaggug--- -----aagcg 3181 g(-uuuac)c cgug------ ---gagcug- aaGUCAG-U| C(GAA)GAUA CCAGCUG-GC 3241 UG|CAACU-- ---GU(UUAU UAAAA)ACAC AGCACUGUG| CAAACAC(GA AA------)G 3301 UGGACGU-AU ACGGUGUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAUU GAUGGGGUCA 3361 GC-------- (G-CAA)--- --------GC GA-AGCUCUU GAUCGAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAU GA-UGGCCAG GCUGUCUCCA CCCGAGACUC 3541 A|GUGAAAUU |GAACUCG-C UG(UGAAGAU G)CAGUGUAC CCGCGGC-AA GACGGAAAGA 3601 CCCCGUGA|A CCU-UUACUA U|AGCUUGAC ACU|GAACAU UGAGCCUUGA UGUGUAGGAU 3661 AGGUGGGAGG CAUAGAAG-- UGUGGAC(GC CA)GUCUGCA UGGAGCCAAC -C-UUGAAAU 3721 ACCACC|CUU U-AAUGUUUG AUG-UUCUAA -CUCGGC--- -CCCG(--UA -AUC)-CGGG 3781 GUGAG-GACA GUGUCAGGUG GG-UAGUUUG ACUG(GGG)C GGUC|UCCUC C(CAA-AGAG 3841 UAAC)GGAGG A|G|C|ACGA AGGUUAGC|U AAUCACGG(U CGGACA)UCG UGAGGU-UA| 3901 GU(G|CAAAG )GCAUAAGCU AGCUUCACUG CGAGAG(UGA CGG)CUCGAG CAGGUAC(GA 3961 AA)GU-AGGU |CUUAGUGAU CCGGUGGUUC UG(AAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UGA--UACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GAAG 4141 U---A)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGUGGUAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|CG-YUG 4261 GARRAYU|GA -|GRGGGGC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG MAUCACUGGU GUUCGGGU|U GUCAU(GC-C A-)AUGGCA- YUGCCCGGUA 4381 GCU-AAAUKC GGAAGAGAUA ASYGCU(GAA AGCAUCUA)A GCRSGAAACU UGCCYC|GAG 4441 AUGAGUUCUC C|CU|GAGAC U(-ACA--)A GUCUC-CUG- AAGG|-AA|C GUUG-(AAGA 4501 CG-A)CGACG -UUGAUAG|G CYGG|GUGUG -UAAGCGCG- -(AGUU-)-- GGCGU|UG-A 4561 GCUA|A|CCG GUACUAAUG- AACCGUGAG| GCUUAA-CCU U-------|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS P.shigello 4759 bp RNA RNA 11-JAN-191 DEFINITION Plesiomonas shigelloides. ACCESSION No information KEYWORDS No information. SOURCE Plesiomonas shigelloides. ORGANISM Plesiomonas shigelloides. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X65487 ID PS23SRRN standard; DNA; PRO; 2761 BP. XX AC X65487; XX DT 10-AUG-1992 (Rel. 33, Created) DT 10-AUG-1992 (Rel. 33, Last updated, Version 2) XX DE P.shigelloides gene for 23S rRNA XX KW 23S ribosomal RNA; ribosomal RNA. XX OS Plesiomonas shigelloides OC Prokaryota; Bacteria; Gracilicutes; Scotobacteria; OC Facultatively anaerobic rods; Vibrionaceae. XX RN [1] RA East A.K., Allaway D., Collins M.D.; RT "Analysis of DNA encoding 23S rRNA and 16S-23S rRNA intergenic RT spacer regions from Plesiomonas shigelloides"; RL FEMS Microbiol. Lett. 95:57-62(1992). XX RN [2] RP 1-2761 RA East A.K.; RT ; RL Submitted (08-APR-1992) on tape to the EMBL Data Library by: RL A.K. East, AFRC Inst of Food Res/Reading Lab, Microbiology RL Department, Earley Gate, Whiteknights Rd, Reading RG6 2EF, UK XX CC *source: strain=NCIMB 9242; CC *source: clone=pAEA3; XX FH Key Location/Qualifiers FH FT rRNA <1..>2761 FT /product="23S rRNA" XX SQ Sequence 2761 BP; 745 A; 578 C; 862 G; 576 T; 0 other; BASE COUNT 745 a 578 c 862 g 576 t 1998 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGUGAC- --UAAGCGUA CACGGUGGAU 121 G|CCUUGG|C AGUCAG|AG| GC-GAUGAAG GA|CGU-(CG AU-GG-)G|- ACGGAAAAGG 181 GUUGGU|-GA GCU(G-GG-A UGG-)AGCGC UAUAGC-CAA CCAUG|UCCG AAUGGG(GAA 241 A)CCC|accu aag-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----auaa)- cuuaggu-au cg-uuaagu( 481 ga-AUACA-- ua)gcu-uaa -u-g--aGG- C-gaAC|CG- GGAGAACU|G A(AACA)UCU 541 AAGUA--CCC GAGGAAAAGA AAUC(-AACC --)GAGAU|U CC-GUUAGUA GC(GGCGA)G 601 CGA-ACG-CG GA-GCA-GCC C--------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ----agaguc ugaaucagug gauguguu-a gugGAAc-gg a-u(u-ggaa a)g-uccggc 781 |g(aua)caG GG(UGAUAGC )CCCGU-Aca c-gaagacgc auu-gcug-- ----ugagcu 841 c--------- ---------- -----gauGA GUAGGACGGG A(CACGUG-G UA)UCCUGUU 901 UGAAGAUAGG G-GG(GACCA U)CC-UCC-A AGGCUAA--- -AUACUCCUG ACUGACCGAU 961 AGCG-AAC-C AGUACC(GUG A)AGGGA-AA GGCGAAAA-G AACCCC(UGU GA-)GGGGAg 1021 uGUGAAA-UA GAACCUAAAA CCGU-GUACG UACAA-G-CA GUGGGagcac --c------- 1081 --------(- --uucgu--) ---------- -----g-guG UGACUGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAC-AUUU- UGUAGC-GAG GUUAACC--( -GAAUA)--G 1201 G-GGAGCCGU AGG(GAAA-) CCGAGUCU(U AA-CU)GGGC GA-------- ---------- 1261 ---------- -----au-ua g-uugca--- -------CCC GAAAC-CCG- GUGA-UCUAG 1321 CCAUGGG|CA GGUUGAAGGU UGGG(UAAC) ACguaACUGG AGGACCGAAC C-GACUAAU( 1381 -GUUGAAAA) AUUAG|CGG- AUGAC-UUGU GGCUGGGGGU (-GAAAG)GC CAAUCAAACC 1441 GGGAGAUAGC UGGUUCUCCC CGAAAGCUAU (-UUAG)GUA GCGC|-CUCG GACGA---A| 1501 -CAC|CUACG G|GGGUAG|A GC-ACUGU-U AAGGCUA-GG |-GGGUC(AU CCC)GACUUA 1561 CCAACCCUUU -GCAAACUCC GAA-UA-|CC G-U-A-G--A GUGC----U| AUC-CGGGAG 1621 ACACAC--GG C-GGGU(GCU AAC)GUCCGU -CGUG-AAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAGUC-AUGG -U-UAA-GUG ------GGAA ACGAUGUG-G 1741 GAAGGCUUA- GACAGCUAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUA GU-----CGA GU-CGG-CC- -UGC|GCGGA AGAU-GUAA- 1861 CGGGGCU-AA ACCAU-G|C| ACCGAAGCU| GCGG|caaug acau---(uu ag-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- guguuauug- GGCUAGGGGA G|-----CGU 2221 U-CUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CGGU-U 2341 GAAGGUG-U- A-CU(-GUGA -)GGU--AUG CUGG|ACGUA U-CAGAAGUG CGAAUGC-UG 2401 AC|AUA-AGU A--ACGAUAA AGCGGG(UGA AAAG)CCCGC U|CGCCCGGA AGACCAAGGG 2461 UUCCUG-UUC AACG-(UUAA U)CG|G-AGC AGGGUGAGU| CGA|C-CCCU AAGGCGAGGC 2521 U(GAAA)-A- GCGU-AGUCG AUGG-GAAAC GGG-(UU-AA UAUU)C-CCG U|AC|uu-g- 2581 ug-gua-acu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga a------ggg g--gga-cgg agaaaguua- ggcu-a-|uc c-ggg(cg-- 2761 acgg-u-ugu --)cc-cggu -|uuaa---- ---------- ---gcgu-ga aggu------ 2821 -ggagag-ac uagg(ca-aa -u-)cc|g-- gucuuucau- -------uaa cacu-gaggc 2881 gug-auga|c ga-|------ ------agca c(-uacg--) gugcu----- ------gaag 2941 --uagcu-ga uacu-acg-| cuuccaggaa a-agccuc-u aagcauca-- ------gg-u 3001 -uacca--ga a|A|UCGUAC CCCAAACC(G ACACA)GG|U GG-UCAGGU- A-(GAGAA)U 3061 ACUCAGGCGC ||UUGAGAGA ACUCGGGUG- ---------- ----AAGGAA CUAGGCAAAA 3121 UGGUGCCGUA AC(-UUCG)G GAGAAGGCAC |gcugac-gg -uaggug--- -----aaguc 3181 c(-cuugc)g gaugga---- -----gcug- aagucag-U| C(GAA)GAUA CCAGCUG-GC 3241 UG|CAACU-- ---GU(UUAU UAAAA)ACAC AGCACUGUG| CAAACAC(GA AA------)G 3301 UGGACGU-AU ACGGUGUGA- CGCCUGCCCG GU|GCCG-GA A-GGUUAAUU GAUGGGGUUA 3361 GC-------- (G-AAA)--- --------GC GA-AGCUCUU GAUCGAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAU GA-UGGCCAG GCUGUCUCCA CCCGAGACUC 3541 A|GUGAAAUU |GAAAUCG-C UG(UGAAGAU G)CAGUGUAC CCGCGGC-AA GACGGAAAGA 3601 CCCCGUGA|A CCU-UUACUA U|AGCUUGAC ACU|GAACAU UGAGCCUUGA UGUGUAGGAU 3661 AGGUGG-AGG CAUUGAAA-- CGUGAAC(GC CA)GUUUGCG UGGAGCCGAC -C-UUGAAAU 3721 ACCACC|CUU U-AAUGUUUG AUG-UUCUAA -CGUUGU--- -CCCG(--UA -AUC)-CGGG 3781 AUACG-GACA GUGUCUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|UCCUC C(UAAaAGAG 3841 UAAC)GGAGG A|G|C|ACGA AGGUUAGC|U AAGCAUGG(U CGGACA)UCA UGCGGU-UA| 3901 GU(G|CAAAG )GCAGAAGCU AGCUUAACUG CGAGAC(GGA CAG)GUCGAG CAGAUAC(GA 3961 AA)GU-AGGU |CUUAGUGAU CCGGUGGUUC UG(AAUGGA) AGG|GCCAUC -CUCAAC|GG 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UGA--UACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GAAG 4141 U---U)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGUGGUAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GUCGUG G-G|AG-UUG 4261 GAUGAUU|GA -|GGGGGGC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG CAUCUCUGGU GUUCCGGU|U GUCAC(GC-C A-)GUGGCA- UUGCCGGGUA 4381 GCU-AAAUGC GGAAGAGAUA AGCGCU(GAA AGCAUCUA)A GCGUGAAnnn nnnnnn|nnn 4441 nnnnnnnnnn n|nn|nnnnn n(-nnn--)n nnnnn-nnn- nnnn|-nn|n nnnn-(nnnn 4501 nn-n)nnnnn -nnnnnnn|n nnnn|nnnnn -nnnnnnnn- -(nnnn-)-- nnnnn|nn-n 4561 nnnn|n|nnn nnnnnnnnn- nnnnnnnnn| nnnnnn-nnn n-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS H.influe.F 4759 bp RNA RNA 11-JAN-191 DEFINITION Haemophilus influenzae str. strain Rd. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus influenzae str. strain Rd. ORGANISM Haemophilus influenzae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U32707 L42023 LOCUS HIU32707 12896 bp DNA BCT 02-AUG-1995 DEFINITION Haemophilus influenzae hsdS, prrD, arcB-A, rrnF 5S, rrnF 23S genes from bases 232210 to 245105 of the complete genome. ACCESSION U32707 L42023 KEYWORDS . SOURCE Haemophilus influenzae (strain Rd). ORGANISM Haemophilus influenzae Eubacteria; Proteobacteria; gamma subdivision; Pasteurellaceae; Haemophilus. REFERENCE 1 (bases 1 to 12896) AUTHORS Fleischmann,R.D., Adams,M.D., White,O., Clayton,R.A., Kirkness,E.F., Kerlavage,A.R., Bult,C.J., Tomb,J.-F., Dougherty,B.A., Merrick,J.M., McKenney,K., Sutton,G., FitzHugh,W., Fields,C.A., Gocayne,J.D., Scott,J.D., Shirley,R., Liu,L.-I., Glodek,A., Kelley,J.M., Weidman,J.F., Phillips,C.A., Spriggs,T., Hedblom,E., Cotton,M.D., Utterback,T.R., Hanna,M.C., Nguyen,D.T., Saudek,D.M., Brandon,R.C., Fine,L.D., Fritchman,J.L., Fuhrmann,J.L., Geoghagen,N.S.M., Gnehm,C.L., McDonald,L.A., Small,K.V., Fraser,C.M., Smith,H.O. and Venter,J.C. TITLE Whole-genome random sequencing and assembly of Haemophilus influenzae Rd JOURNAL Science 269, 496-512 (1995) REFERENCE 2 (bases 1 to 12896) AUTHORS White,O. TITLE Direct Submission JOURNAL Submitted (31-JUL-1995) The Institute for Genomic Research, 932 Clopper Rd., Gaithersburg, MD 20878, USA COMMENT Address all correspondence to: J. Craig Venter The Institute for Genomic Research 932 Clopper Rd, Gaithersburg, MD, 20878 (New address as of Sept 9, 1995: 9712 Medical Center Dr, Rockville, MD, 20850) Jean-Francois Tomb, Brian A. Dougherty, and Hamilton O. Smith are with the Johns Hopkins University School of Medicine, Baltimore, MD, 21205. Joseph M. Merrick is with the State University of New York, Department of Microbiology, Buffalo, NY, 14214. Chris Fields' current address is The National Center for Genome Resources, Sante Fe, NM, 87505. Keith McKenney is with the National Institute for Standards and Technology, Gaithersburg, MD, 20878. All other authors are with The Institute for Genomic Research, 932 Clopper Rd, Gaithersburg, MD, 20878. Predicted open reading frames were determined using GeneMark software, kindly supplied by Mark Borodovsky, Georgia Institute of Technology, Atlanta, GA, 30332. e-mail: mark@amber.gatech.edu Submitted by: Robert D. Fleischmann e-mail: rdfleisc@tigr.org Annotation: Owen White e-mail: owhite@tigr.org Biological role information, putative identifications, sequence alignments, on-line name and sequence search capability are available at TIGR's World Wide Web site (URL: http://www.tigr.org/). NCBI gi: 925116 FEATURES Location/Qualifiers source 1..12896 /organism="Haemophilus influenzae" /strain="Rd" CDS 678..1835 /gene="hsdS" /standard_name="HI0216" /note="similar to GB:X73984 (Escherichia coli) percent identity: 36.1; identified by sequence similarity; putative; Method: conceptual translation supplied by author. NCBI gi: 925117" /codon_start=1 /product="type I restriction enzyme ecokI specificity protein" /translation="MKNNRTFLEKLLEGSEVEWKPLDEVANIVNNARKPVKSSLRVSG NIPYYGANNIQDYVEGYTHEGEFVLIAEDGSASLENYSIQWAVGKFWANNHVHVVNGK EKLNNRFLYHYLTNMNFIPFLAGKERAKLTKAKLQQIPIPIPPLSVQTEIVKILDALT ALTSELTSELTSELTSELILRQKQYEYYREKLLNIDEMNKVIELGDVGPVRMCKRILK NQTASSGDIPFYKIGTFGKKPDAYISNELFQEYKQKYSYPKKGDILISASGTIGRTVI FDGENSYFQDSNIVWIDNDETLVLNKYLYHFYKIAKWGIAEGGTIQRLYNDNLKKVKI SIPPLKEQHRIVSILDKFETLTNSITEGLPLAIEQSQKRYEYYRELLLNFS" CDS 1964..2494 /standard_name="HI0217" /note="identified by GeneMark; putative; Method: conceptual translation supplied by author. NCBI gi: 925118" /codon_start=1 /product="H. influenzae predicted coding region HI0217" /translation="MSNYRRDFTKGGLYFFTIVLQDRTKSYLTDYINEFRSAYKQTCE HYPFETVAICILPDHIHLLMQLPENDDNYAIRIAYLKTQFTRQLPKECRQFNKNRQKY RESGIWQRRFWEHLIRDDKDLANHLDYIYYNPVKHGYVEVVKDWPYSSFHRDVKAEIY PEDWGGNPDLKIKGDI" CDS 2642..3133 /gene="prrD" /standard_name="HI0218" /note="similar to SP:P17224 (Escherichia coli) percent identity: 63.9; identified by sequence similarity; putative; Method: conceptual translation supplied by author. NCBI gi: 925119" /codon_start=1 /product="anticodon nuclease masking-agent" /translation="MTQYKTIAESNNFIVLDQYNKFVEESNAGYQTERSLEREFIRDL QAQGYEYLQWLNNHDELIKNLRAQLQRLNNVVFSDAEWQRFLEEYLDKPSDNLIEKTR KIHDDYIYDFVFDNGRIQNIYLLDKKNLANNSLQVINQFKQTGSYDNRYDVTILVNGL PLY" CDS complement(5875..6516) /standard_name="HI0219" /note="similar to GB:S68137 (Pasteurella haemolytica) percent identity: 84.7; identified by sequence similarity; putative; Method: conceptual translation supplied by author. NCBI gi: 925120" /codon_start=1 /product="hypothetical protein (GB:S68137_1)" /translation="MEIYMSVFNTFVEFVARIVAPMQRQFINFIRIAIFIVMAWIGGL KVCQYEADGIAHFVSNSPFFSYMYEKGPNLVPNDKGELVMEYTLHKNPEGKMVAKNIE WHKENGTYTASYIIGAIIVTVGILTLAGIWNATAGLAGGLLTFGMSIVTLSFLITTPE AWVPNLGGDLPTPAYGFPYLSGVGRLVIKDIIMMAGGLTAAAECANRILARKK" CDS complement(7537..8514) /gene="arcB-A" /standard_name="HI0220" /note="similar to SP:P22763 (Escherichia coli) percent identity: 48.9; identified by sequence similarity; putative; Method: conceptual translation supplied by author. NCBI gi: 925121" /codon_start=1 /product="aerobic respiration control sensor protein" /translation="MKNFKYFAQSYVDWVIRLGRLRFSLLGVMILAVLALCTQILFSL FIVHQISWVDIFRSVTFGLLTAPFVIYFFTLLVEKLEHSRLDLSSSVNRLENEVAERI AAQKKLSQALEKLEKNSRDKSTLLATISHEFRTPLNGIVGLSQILLDDELDDLQRNYL KTINISAVSLGYIFSDIIDLEKIDASRIELNRQPTDFPALLNDIYNFASFLAKEKNLI FSLELEPNLPNWLNLDRVRLSQILWNLISNAVKFTDQGNIILKIMRNQDCYHFIVKDT GMGISPEEQKHIFEMYYQVKESRQQSAGSGIGLAISKNLAQLMGRGFNS" rRNA complement(9478..9592) /gene="rrnF 5S" /note="putative" /product="5S rRNA" rRNA complement(9839..12735) /gene="rrnF 23S" /note="putative" /product="23S rRNA" BASE COUNT 4032 a 2726 c 2260 g 3875 t 3 others ORIGIN BASE COUNT 829 a 575 c 869 g 624 t 1862 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- ---------G UUAAGUGAC- --UAAGCGUA CAAGGUGGAU 121 G|CCUUGG|C AAUCAG|AG| GC-GAAGAAG GA|CGUG(CU AA-UC-)U|- GCG-AAAAGC 181 UUGGAU|-GA GUC(G-AU-A AGA-)GGCGU UU-AAU-CCA AGAUA|UCCG AAUGGG(GAA 241 A)CCC|agua gau-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---gaaga)- aucuacu-au ca-acaagu( 481 ga-AUUCA-- ua)gcu-ugu -u-g--aGG- C-aaAC|CG- GGAGAACU|G A(AACA)UCU 541 AAGUA-CCCC GAGGAAAAGA AAUC(-AACC --)GAGAU|U UC-GUCAGUA GC(GGCGA)G 601 CGA-AAG-CG AA-AGA-GCC AG-------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 --------ua agugauagca auauagug-a ggaGAAu-gu g-u(u-ggga a)g-cacaau 781 |c(aaa)gaG GG(UGAUAAU )CCCGUA-uc u-aaaaacca uauuguggua cuaagc--ua 841 ac-------- ---------- -----gagAA GUAGGGCGGG A(CACGUG-A UA)UCCUGUU 901 UGAAGAA-GG G-GG(GCCCA U)CC-UCC-A AGGCUAA--- -AUACUCCUG AUUGACCGAU 961 AGUG-AAC-C AGUACU(GUG A)-AGGA-AA GGCGAAAA-G AACCCC(GGU GA-)GGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCUU-GUACG UACAA-G-CA GUGGGAGCGA --gg------ 1081 --------(- ---gcaa--) ---------- ----cc-uuG UGACUGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAU-AUUU- UGUAGC-GAG GUUAACC--( -GAAUA)--G 1201 G-GGAGCCGA AGG(GAAA-) CCGAGUCU(U AA-CU)GGGC GA-------- ---------- 1261 ---------- ------a-ua g-UUGCAAGG UAUA-GACCC GAAAC-CCG- GUGA-UCUAG 1321 CCAUGGG|CA GGUUGAAGGU UGGG(UAAC) AC-UAACUGG AGGACCGAAC C-GACUAAU( 1381 -GUUGAAAA) AUUAG|CGG- AUGAC-UUGU GGCUGGGGGU (-GAAAG)GC CAAUCAAACC 1441 GGGAGAUAGC UGGUUCUCCC CGAAAUCUAU (-UUAG)GUA GAGC|-CUUG AGGUG---A| 1501 -CAC|CUUUG G|GGGUAG|A GC-ACUGU-U UCGGCUA-GG |-GGGCC(AU CCC)GGCUUA 1561 CCAACCCGAU -GCAAACUAC GAA-UA-|CC A-A-A-G--A GUGA----U| ACU-CAGGAG 1621 ACACAC--GG C-GGGU(GCU AAC)GUCCGU -CGUG-GAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCC- AAGUC-UAUA -U-UAA-GUG ------GGAA ACGAAGUG-G 1741 GAAGGCUUA- GACAGCUAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUA GU-----CGA GU-CGG-CC- -UGC|GCGGA AGAU-GUAA- 1861 CGGGGCUGAA AUAUA-G|C| ACCGAAGCU| GCGG|cauca gaa----(uu ua-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -uucuguug- GG-UAGGGGA G|-----CGU 2221 U-GUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CGGA-A 2341 GAAGGUU-C- A-UC(-GAGA -)GGU--GGG CUGG|ACGUA U-CACAAGUG CGAAUGC-UG 2401 AC|AUA-AGU A--ACGAUAA AACGGG(UGA AAAA)CCCGU U|CGCC-GGA AGACCAAGGG 2461 UUCCUG-UCC AACG-(UUAA U)CG|G-GGC AGGGUGAGU| CGG|C-UCCU AAGGCGAGGC 2521 U(GAAA)-A- GCGU-AGUCG AUGG-GAAAC AGG-(UU-AA UAUU)C-CUG U|AC|uu-g- 2581 gu-aaa-gcu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga u------gug g--gga-cgg aguagguua- gguu-a-|uc g-cac(ug-- 2761 uugg-a-uau --)gu-gcgu -|uuaa---- ---------- ---guug-gu aggu------ 2821 -gggaag-uu uagg(ca-aa -u-)cc|g-- gacuuccuua ac-------- -aca-gagag 2881 aug-auga|c ga-|------ ------ggcu c(-uacg--) gagcu----- ------gaag 2941 --uaacu-ga uacc-aca-| cuuccaggaa a-agccac-u aagcgaaa-- ------gg-c 3001 -uuuac--ua a|A|CCGUAC UGAAAACC(G ACACA)GG|U GG-UCAGGU- A-(GAGAA)U 3061 ACUCAGGCGC ||UUGAGAGA ACUCGGGUG- ---------- ----AAGGAA CUAGGCAAAA 3121 UAGCACCGUA AC(-UUCG)G GAGAAGGUGC |gccggcgua -ga-uug--- -----uaagg 3181 g(-cuagc)c ccugaa---- ---gguu--- gaaccgg-U| C(GAA)GAUA CCAGCUG-GC 3241 UG|CAACU-- ---GU(UUAU UAAAA)ACAC AGCACUCUG| CAAACAC(GA AA------)G 3301 UGGACGU-AU AGGGUGUGA- UGCCUGCCCG GU|GCUG-GA A-GGUUAAUU GAUGGUGUCA 3361 UC-------- (G-AAA)--- --------GA GA-AGCACCU GAUCGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCAUAAU GA-UGGCCAG GCUGUCUCCA CCCGAGACUC 3541 A|GUGAAAUU |GAAAUCG-C CG(UGAAGAU G)CGGUGUAC CCGCGGC-UA GACGGAAAGA 3601 CCCCGUGA|A CCU-UUACUA U|AGCUUGAC ACU|GAACAU UGAAUUUUGA UGUGUAGGAU 3661 AGGUGGGAGC CUUUGAAG-- CAGUGAC(GC CA)GUCAUUG UGGAGGCGAC -C-UUGAAAU 3721 ACCACC|CUU U-AACGUUUG AUG-UUCUAA -CGAAGA--- -UGAC(--GA -AAC)-GUGG 3781 UCUCG-GACA GUGUCUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|UCCUC C(CAA-AGCG 3841 UAAC)GGAGG A|G|C|ACGA AGGUUUGC|U AAUCACGG(U CGGACA)UCG UGAGGU-UA| 3901 GU(G|CAAUG )GUAUAAGCA AGCUUAACUG CGAGAC(AGA CAA)GUCGAG CAGGUAC(GA 3961 AA)GU-AGGU |CAUAGUGAU CCGGUGGUUC UG(AAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UGA--UACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GAAG 4141 U---A)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGUGGUAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|CG-UAG 4261 GAUGAUU|GA -|UUGGGGC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG CAUCACUGGU GUUCCGGU|U GUGUC(GC-C A-)GACGCA- UUGCCGGGUA 4381 GCU-AAAUGC GGAAGAGAUA AGUGCU(GAA AGCAUCUA)A GCACGAAACU UGCCAA|GAG 4441 AUGAGUCAUC C|CU|--gac u(-uua--)a guc---aGU- AAGG|-GU|U GUUG-(UAGA 4501 CU-A)CGACG -UAGAUAG|G UUGG|GUGUG -UAAGUGAU- -(GUGA-)-- GUCAU|UG-A 4561 GCUA|A|CCA AUACUAAUU- GCCCGAGAG| GCUUAA-C-- --------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS H.influe.E 4759 bp RNA RNA 11-JAN-191 DEFINITION Haemophilus influenzae str. strain Rd. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus influenzae str. strain Rd. ORGANISM Haemophilus influenzae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U32697 L42023 LOCUS HIU32697 9932 bp DNA BCT 02-AUG-1995 DEFINITION Haemophilus influenzae rrnE 5S, rrnE 23S, tRNA-Glu-A, rrnE 16S, tRNA-Pro-A, tRNA-His-A, tRNA-His-B, tRNA-Arg-A, tRNA-Met-A genes from bases 122174 to 132105 of the complete genome. ACCESSION U32697 L42023 KEYWORDS . SOURCE Haemophilus influenzae (strain Rd). ORGANISM Haemophilus influenzae Eubacteria; Proteobacteria; gamma subdivision; Pasteurellaceae; Haemophilus. REFERENCE 1 (bases 1 to 9932) AUTHORS Fleischmann,R.D., Adams,M.D., White,O., Clayton,R.A., Kirkness,E.F., Kerlavage,A.R., Bult,C.J., Tomb,J.-F., Dougherty,B.A., Merrick,J.M., McKenney,K., Sutton,G., FitzHugh,W., Fields,C.A., Gocayne,J.D., Scott,J.D., Shirley,R., Liu,L.-I., Glodek,A., Kelley,J.M., Weidman,J.F., Phillips,C.A., Spriggs,T., Hedblom,E., Cotton,M.D., Utterback,T.R., Hanna,M.C., Nguyen,D.T., Saudek,D.M., Brandon,R.C., Fine,L.D., Fritchman,J.L., Fuhrmann,J.L., Geoghagen,N.S.M., Gnehm,C.L., McDonald,L.A., Small,K.V., Fraser,C.M., Smith,H.O. and Venter,J.C. TITLE Whole-genome random sequencing and assembly of Haemophilus influenzae Rd JOURNAL Science 269, 496-512 (1995) REFERENCE 2 (bases 1 to 9932) AUTHORS White,O. TITLE Direct Submission JOURNAL Submitted (31-JUL-1995) The Institute for Genomic Research, 932 Clopper Rd., Gaithersburg, MD 20878, USA COMMENT Address all correspondence to: J. Craig Venter The Institute for Genomic Research 932 Clopper Rd, Gaithersburg, MD, 20878 (New address as of Sept 9, 1995: 9712 Medical Center Dr, Rockville, MD, 20850) Jean-Francois Tomb, Brian A. Dougherty, and Hamilton O. Smith are with the Johns Hopkins University School of Medicine, Baltimore, MD, 21205. Joseph M. Merrick is with the State University of New York, Department of Microbiology, Buffalo, NY, 14214. Chris Fields' current address is The National Center for Genome Resources, Sante Fe, NM, 87505. Keith McKenney is with the National Institute for Standards and Technology, Gaithersburg, MD, 20878. All other authors are with The Institute for Genomic Research, 932 Clopper Rd, Gaithersburg, MD, 20878. Predicted open reading frames were determined using GeneMark software, kindly supplied by Mark Borodovsky, Georgia Institute of Technology, Atlanta, GA, 30332. e-mail: mark@amber.gatech.edu Submitted by: Robert D. Fleischmann e-mail: rdfleisc@tigr.org Annotation: Owen White e-mail: owhite@tigr.org Biological role information, putative identifications, sequence alignments, on-line name and sequence search capability are available at TIGR's World Wide Web site (URL: http://www.tigr.org/). NCBI gi: 925338 FEATURES Location/Qualifiers source 1..9932 /organism="Haemophilus influenzae" /strain="Rd" CDS complement(139..255) /standard_name="HI0114" /note="identified by GeneMark; putative; Method: conceptual translation supplied by author. NCBI gi: 925339" /codon_start=1 /product="H. influenzae predicted coding region HI0114" /translation="MRTTGYIVWGILIGKKGKLEEMCIDFVVKLDAKLYLNF" rRNA complement(677..791) /gene="rrnE 5S" /note="putative" /product="5S rRNA" rRNA complement(1039..3935) /gene="rrnE 23S" /note="putative" /product="23S rRNA" tRNA complement(4210..4282) /gene="tRNA-Glu-A" /note="putative" /product="transfer RNA-Glu" rRNA complement(4414..5952) /gene="rrnE 16S" /note="putative" /product="16S rRNA" tRNA complement(6133..6206) /gene="tRNA-Pro-A" /note="putative" /product="transfer RNA-Pro" tRNA complement(6155..6303) /gene="tRNA-His-A" /note="putative" /product="transfer RNA-His" tRNA complement(6231..6303) /gene="tRNA-His-B" /note="putative" /product="transfer RNA-His" tRNA complement(6333..6406) /gene="tRNA-Arg-A" /note="putative" /product="transfer RNA-Arg" CDS complement(6555..8192) /standard_name="HI0115" /note="similar to GB:X73124 (Bacillus subtilis) percent identity: 30.7; identified by sequence similarity; putative; Method: conceptual translation supplied by author. NCBI gi: 925340" /codon_start=1 /product="hypothetical protein (GB:X73124_20)" /translation="MQVKRLYVKLSRRQLLMRSGWQVGSPLVDPMCGSGTLLIEAAQM EAKIAPQLYRLHWGFDFWKAHNQSAWEKVKNEAIELAEEKQREIQPHFYGFDLDHRVL KKAQKNAQNAGVSHLIKWQQADVAALKNPRLNEVGTVICNPPYGERLGTTPALIALYS VFGQRLKKEFCGWNVSVFSSESTLLDCLRMRASRQFKAKNGPLDCVQKNYQVSERKSD AITDEKELEFNRTSEVAPDFANRLQKNIKKISKWAKQQELDAYRLYDADLPEYNLAVD RYADYIVVQEYAAPKNIDENKARQRLLDAVTATLQVTGVETNKLILKVRQKQKGTNQY EKLANKGEYFYVNEYGTQLWVNLTDYLDTGLFLDHRLTRKMIGELAKGKDFLNLFAYT GSATVHAALGGAKSTTTVDMSNTYLNWAEQNLILNDIEGKQHKLIQADCLQWLEKCDR QFDLIFADPPTFSNSKRMEESWDVQRDHVKLMRNLKRVLSNNGTIVFSNNKRGFKMNL VALEELGLSAIEISHKTLPLDFERNKQIHNCWMIQHI" CDS complement(8074..8691) /standard_name="HI0116" /note="identified by GeneMark; putative; Method: conceptual translation supplied by author. NCBI gi: 925341" /codon_start=1 /product="H. influenzae predicted coding region HI0116" /translation="MKQLFATTSRGFEELLKVELTELGAQEAKVVQGGVHYQADDETL YRTLLWSRLASRILFPLIETKIYSDLDLYAAVSGFNWLAQFDERVTFFVDFNGTNQEI RHTQFGAMRVKDGIVDYFERQGKTRPDVDKIQPDVRIHAYLNRENLVISLDLSGEALH LRGYREDAGQAPLRETLAAAIVNAFRLASGFSISRSNVWFRYAFN" tRNA complement(8825..8898) /gene="tRNA-Met-A" /note="putative" /product="transfer RNA-Met" CDS 9383..9634 /standard_name="HI0117" /note="identified by GeneMark; putative; Method: conceptual translation supplied by author. NCBI gi: 925342" /codon_start=1 /product="H. influenzae predicted coding region HI0117" /translation="MKRITNWVLSGANINELTQFNIQPQIMRGFDGFQNVLMTGYYSP ILYARHSPQGQFKNPIYRMPVKKRLSRAQIYAGALAEKD" BASE COUNT 2650 a 2455 c 1761 g 3063 t 3 others ORIGIN BASE COUNT 829 a 575 c 869 g 624 t 1862 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- ---------G UUAAGUGAC- --UAAGCGUA CAAGGUGGAU 121 G|CCUUGG|C AAUCAG|AG| GC-GAAGAAG GA|CGUG(CU AA-UC-)U|- GCG-AAAAGC 181 UUGGAU|-GA GUC(G-AU-A AGA-)GGCGU UU-AAU-CCA AGAUA|UCCG AAUGGG(GAA 241 A)CCC|agua gau-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---gaaga)- aucuacu-au ca-acaagu( 481 ga-AUUCA-- ua)gcu-ugu -u-g--aGG- C-aaAC|CG- GGAGAACU|G A(AACA)UCU 541 AAGUA-CCCC GAGGAAAAGA AAUC(-AACC --)GAGAU|U UC-GUCAGUA GC(GGCGA)G 601 CGA-AAG-CG AA-AGA-GCC AG-------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 --------ua agugauagca auauagug-a ggaGAAu-gu g-u(u-ggga a)g-cacaau 781 |c(aaa)gaG GG(UGAUAAU )CCCGUA-uc u-aaaaacca uauuguggua cuaagc--ua 841 ac-------- ---------- -----gagAA GUAGGGCGGG A(CACGUG-A UA)UCCUGUU 901 UGAAGAA-GG G-GG(GCCCA U)CC-UCC-A AGGCUAA--- -AUACUCCUG AUUGACCGAU 961 AGUG-AAC-C AGUACU(GUG A)-AGGA-AA GGCGAAAA-G AACCCC(GGU GA-)GGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCUU-GUACG UACAA-G-CA GUGGGAGCGA --gg------ 1081 --------(- ---gcaa--) ---------- ----cc-uuG UGACUGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAU-AUUU- UGUAGC-GAG GUUAACC--( -GAAUA)--G 1201 G-GGAGCCGA AGG(GAAA-) CCGAGUCU(U AA-CU)GGGC GA-------- ---------- 1261 ---------- ------a-ua g-UUGCAAGG UAUA-GACCC GAAAC-CCG- GUGA-UCUAG 1321 CCAUGGG|CA GGUUGAAGGU UGGG(UAAC) AC-UAACUGG AGGACCGAAC C-GACUAAU( 1381 -GUUGAAAA) AUUAG|CGG- AUGAC-UUGU GGCUGGGGGU (-GAAAG)GC CAAUCAAACC 1441 GGGAGAUAGC UGGUUCUCCC CGAAAUCUAU (-UUAG)GUA GAGC|-CUUG AGGUG---A| 1501 -CAC|CUUUG G|GGGUAG|A GC-ACUGU-U UCGGCUA-GG |-GGGCC(AU CCC)GGCUUA 1561 CCAACCCGAU -GCAAACUAC GAA-UA-|CC A-A-A-G--A GUGA----U| ACU-CAGGAG 1621 ACACAC--GG C-GGGU(GCU AAC)GUCCGU -CGUG-GAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCC- AAGUC-UAUA -U-UAA-GUG ------GGAA ACGAAGUG-G 1741 GAAGGCUUA- GACAGCUAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUA GU-----CGA GU-CGG-CC- -UGC|GCGGA AGAU-GUAA- 1861 CGGGGCUGAA AUAUA-G|C| ACCGAAGCU| GCGG|cauca gaa----(uu ua-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -uucuguug- GG-UAGGGGA G|-----CGU 2221 U-GUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CGGA-A 2341 GAAGGUU-C- A-UC(-GAGA -)GGU--GGG CUGG|ACGUA U-CACAAGUG CGAAUGC-UG 2401 AC|AUA-AGU A--ACGAUAA AACGGG(UGA AAAA)CCCGU U|CGCC-GGA AGACCAAGGG 2461 UUCCUG-UCC AACG-(UUAA U)CG|G-GGC AGGGUGAGU| CGG|C-UCCU AAGGCGAGGC 2521 U(GAAA)-A- GCGU-AGUCG AUGG-GAAAC AGG-(UU-AA UAUU)C-CUG U|AC|uu-g- 2581 gu-aaa-gcu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga u------gug g--gga-cgg aguagguua- gguu-a-|uc g-cac(ug-- 2761 uugg-a-uau --)gu-gcgu -|uuaa---- ---------- ---guug-gu aggu------ 2821 -gggaag-uu uagg(ca-aa -u-)cc|g-- gacuuccuua ac-------- -aca-gagag 2881 aug-auga|c ga-|------ ------ggcu c(-uacg--) gagcu----- ------gaag 2941 --uaacu-ga uacc-aca-| cuuccaggaa a-agccac-u aagcgaaa-- ------gg-c 3001 -uuuac--ua a|A|CCGUAC UGAAAACC(G ACACA)GG|U GG-UCAGGU- A-(GAGAA)U 3061 ACUCAGGCGC ||UUGAGAGA ACUCGGGUG- ---------- ----AAGGAA CUAGGCAAAA 3121 UAGCACCGUA AC(-UUCG)G GAGAAGGUGC |gccggcgua -ga-uug--- -----uaagg 3181 g(-cuagc)c ccugaa---- ---gguu--- gaaccgg-U| C(GAA)GAUA CCAGCUG-GC 3241 UG|CAACU-- ---GU(UUAU UAAAA)ACAC AGCACUCUG| CAAACAC(GA AA------)G 3301 UGGACGU-AU AGGGUGUGA- UGCCUGCCCG GU|GCUG-GA A-GGUUAAUU GAUGGUGUCA 3361 UC-------- (G-AAA)--- --------GA GA-AGCACCU GAUCGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCAUAAU GA-UGGCCAG GCUGUCUCCA CCCGAGACUC 3541 A|GUGAAAUU |GAAAUCG-C CG(UGAAGAU G)CGGUGUAC CCGCGGC-UA GACGGAAAGA 3601 CCCCGUGA|A CCU-UUACUA U|AGCUUGAC ACU|GAACAU UGAAUUUUGA UGUGUAGGAU 3661 AGGUGGGAGC CUUUGAAG-- CAGUGAC(GC CA)GUCAUUG UGGAGGCGAC -C-UUGAAAU 3721 ACCACC|CUU U-AACGUUUG AUG-UUCUAA -CGAAGA--- -UGAC(--GA -AAC)-GUGG 3781 UCUCG-GACA GUGUCUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|UCCUC C(CAA-AGCG 3841 UAAC)GGAGG A|G|C|ACGA AGGUUUGC|U AAUCACGG(U CGGACA)UCG UGAGGU-UA| 3901 GU(G|CAAUG )GUAUAAGCA AGCUUAACUG CGAGAC(AGA CAA)GUCGAG CAGGUAC(GA 3961 AA)GU-AGGU |CAUAGUGAU CCGGUGGUUC UG(AAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UGA--UACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GAAG 4141 U---A)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGUGGUAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|CG-UAG 4261 GAUGAUU|GA -|UUGGGGC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG CAUCACUGGU GUUCCGGU|U GUGUC(GC-C A-)GACGCA- UUGCCGGGUA 4381 GCU-AAAUGC GGAAGAGAUA AGUGCU(GAA AGCAUCUA)A GCACGAAACU UGCCAA|GAG 4441 AUGAGUCAUC C|CU|--gac u(-uua--)a guc---aGU- AAGG|-GU|U GUUG-(UAGA 4501 CU-A)CGACG -UAGAUAG|G UUGG|GUGUG -UAAGUGAU- -(GUGA-)-- GUCAU|UG-A 4561 GCUA|A|CCA AUACUAAUU- GCCCGAGAG| GCUUAA-C-- --------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS H.influe.D 4759 bp RNA RNA 11-JAN-191 DEFINITION Haemophilus influenzae str. strain Rd. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus influenzae str. strain Rd. ORGANISM Haemophilus influenzae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U32847 L42023 LOCUS HIU32847 12496 bp DNA BCT 02-AUG-1995 DEFINITION Haemophilus influenzae rrnD 5S, rrnD 23S, tRNA-Ala-D, tRNA-Ile-C, rrnD 16S, recG, spoT genes from bases 1815745 to 1828240 of the complete genome. ACCESSION U32847 L42023 KEYWORDS . SOURCE Haemophilus influenzae (strain Rd). ORGANISM Haemophilus influenzae Eubacteria; Proteobacteria; gamma subdivision; Pasteurellaceae; Haemophilus. REFERENCE 1 (bases 1 to 12496) AUTHORS Fleischmann,R.D., Adams,M.D., White,O., Clayton,R.A., Kirkness,E.F., Kerlavage,A.R., Bult,C.J., Tomb,J.-F., Dougherty,B.A., Merrick,J.M., McKenney,K., Sutton,G., FitzHugh,W., Fields,C.A., Gocayne,J.D., Scott,J.D., Shirley,R., Liu,L.-I., Glodek,A., Kelley,J.M., Weidman,J.F., Phillips,C.A., Spriggs,T., Hedblom,E., Cotton,M.D., Utterback,T.R., Hanna,M.C., Nguyen,D.T., Saudek,D.M., Brandon,R.C., Fine,L.D., Fritchman,J.L., Fuhrmann,J.L., Geoghagen,N.S.M., Gnehm,C.L., McDonald,L.A., Small,K.V., Fraser,C.M., Smith,H.O. and Venter,J.C. TITLE Whole-genome random sequencing and assembly of Haemophilus influenzae Rd JOURNAL Science 269, 496-512 (1995) REFERENCE 2 (bases 1 to 12496) AUTHORS White,O. TITLE Direct Submission JOURNAL Submitted (31-JUL-1995) The Institute for Genomic Research, 932 Clopper Rd., Gaithersburg, MD 20878, USA COMMENT Address all correspondence to: J. Craig Venter The Institute for Genomic Research 932 Clopper Rd, Gaithersburg, MD, 20878 (New address as of Sept 9, 1995: 9712 Medical Center Dr, Rockville, MD, 20850) Jean-Francois Tomb, Brian A. Dougherty, and Hamilton O. Smith are with the Johns Hopkins University School of Medicine, Baltimore, MD, 21205. Joseph M. Merrick is with the State University of New York, Department of Microbiology, Buffalo, NY, 14214. Chris Fields' current address is The National Center for Genome Resources, Sante Fe, NM, 87505. Keith McKenney is with the National Institute for Standards and Technology, Gaithersburg, MD, 20878. All other authors are with The Institute for Genomic Research, 932 Clopper Rd, Gaithersburg, MD, 20878. Predicted open reading frames were determined using GeneMark software, kindly supplied by Mark Borodovsky, Georgia Institute of Technology, Atlanta, GA, 30332. e-mail: mark@amber.gatech.edu Submitted by: Robert D. Fleischmann e-mail: rdfleisc@tigr.org Annotation: Owen White e-mail: owhite@tigr.org Biological role information, putative identifications, sequence alignments, on-line name and sequence search capability are available at TIGR's World Wide Web site (URL: http://www.tigr.org/). NCBI gi: 926830 FEATURES Location/Qualifiers source 1..12496 /organism="Haemophilus influenzae" /strain="Rd" rRNA complement(147..261) /gene="rrnD 5S" /note="putative" /product="5S rRNA" rRNA complement(508..3404) /gene="rrnD 23S" /note="putative" /product="23S rRNA" tRNA complement(3814..3886) /gene="tRNA-Ala-D" /note="putative" /product="transfer RNA-Ala" tRNA complement(3975..4048) /gene="tRNA-Ile-C" /note="putative" /product="transfer RNA-Ile" rRNA complement(4128..5666) /gene="rrnD 16S" /note="putative" /product="16S rRNA" CDS complement(8231..10312) /gene="recG" /standard_name="HI1740" /note="similar to GB:L10328 (Escherichia coli) percent identity: 66.5; identified by sequence similarity; putative; Method: conceptual translation supplied by author. NCBI gi: 926831" /codon_start=1 /product="DNA recombinase" /translation="MSLELLDAVPLTSLSGVGAAISNKLAKIGIHNLQDLLFHLPIRY EDRTRITLIANLRPEQYFTIEGIVQTCEVAFGRRPILSVSLSDGTSKIMLRFFNFNAG MRNSFQVGVRVKAFGEVKRGRHMPEIHHPEYQIVRDNAPIVLEETLTPIYSTTEGLKQ NSLRKLTDQALALLDKVQIAEILPNEFNPHQYSLKEALRLLHRPPPDISLEMLEQGKH PAQQRLIFEELLAHNLAMQKVRLGTQQFSALPLHYQTDLKQRFLATLPFQPTNAQKRV VSDIEQDLIKDYPMMRLVQGDVGSGKTLVAALAALTAIDNGKQVALMAPTEILAEQHA NNFRRWFKPFGIEVGWLAGKVKGKSRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLA LVIIDEQHRFGVHQRLMLREKGEKAGFYPHQLIMTATPIPRTLAMTVYADLDTSIIDE LPPGRTPITTVVVSEERRAEIVMRVKNACVNEKRQAYWVCTLIDESEVLEAQAAEAIW EDLTKALPMLNIGLVHGRMKPQEKQDVMMRFKNAELDLLVATTVIEVGVDVPNASLMI IENAERLGLSQLHQLRGRVGRGCTASFCVLMYKPPLGKVSQKRLQVLRDSQDGFVISE KDLEIRGPGEVLGTKQTGIAELRVANLMRDRKMIPTVQHYAKSLIQKYPDVAESLIRR WLNNKEIYSNA" CDS complement(10309..12342) /gene="spoT" /standard_name="HI1741" /note="similar to GB:L10328 (Escherichia coli) percent identity: 58.8; identified by sequence similarity; putative; Method: conceptual translation supplied by author. NCBI gi: 926832" /codon_start=1 /product="penta-phosphate guanosine-3'-pyrophosphohydrolase" /translation="MIARDAHEGQFRSSGEPYITHPVAVASIIAQLHLDHEAVMAALL HDVIEDTPYTEEQLKEEFGASVAEIVDGVSKLDKLKFRTRQEAQVENFRKMILAMTRD IRVVLIKLADRTHNMRTLGSLRPDKRRRIAKETLEIYCPLAHRLGIEHIKNELEDLSF QAMHPHRYEVLKKLVDVARSNRQDLIERISQEIKVRLENSGIFARVWGREKHLYKIYQ KMRIKDQEFHSIMDIYAFRVIVKNVDDCYRVLGQMHNLYKPRPGRVKDYIAVPKANGY QSLQTSMIGPKGVPVEVHIHTEDMEQVAEMGITAHWVYKENGKNDSTTAQIRVQRWLQ SLVEIQQSVGNSFEFIENVKSEFFPKEIYVFTPKGRIVELPMGATAVDFAYAVHSDVG NTCVGVTVEHKPYPLSKALESGQTVNIITDPNAHPEVAWLNFVVTARAKTRIRHYLKQ RCEEDAVKLGEVELNVALQPHNLGDFSIQQIRTVLDALALSSLDELLREIGLGNQSAS MIAHQFVGVPLESANTKNLEFESKILTIAPMQVGKTQFAQCCHPILGDPIVGCCTEKN TVVVHHQHCASLKNACRQSLAKWDNVQSAVNFEAELQIEILNEQNALLSLMTAISASE SSLQNIWTEELENNLLLVILQVCVKDIKHLANIVHRIKGITGVVNVKRNINEL" BASE COUNT 3316 a 3135 c 2250 g 3795 t ORIGIN BASE COUNT 829 a 575 c 869 g 624 t 1862 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- ---------G UUAAGUGAC- --UAAGCGUA CAAGGUGGAU 121 G|CCUUGG|C AAUCAG|AG| GC-GAAGAAG GA|CGUG(CU AA-UC-)U|- GCG-AAAAGC 181 UUGGAU|-GA GUC(G-AU-A AGA-)GGCGU UU-AAU-CCA AGAUA|UCCG AAUGGG(GAA 241 A)CCC|agua gau-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---gaaga)- aucuacu-au ca-acaagu( 481 ga-AUUCA-- ua)gcu-ugu -u-g--aGG- C-aaAC|CG- GGAGAACU|G A(AACA)UCU 541 AAGUA-CCCC GAGGAAAAGA AAUC(-AACC --)GAGAU|U UC-GUCAGUA GC(GGCGA)G 601 CGA-AAG-CG AA-AGA-GCC AG-------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 --------ua agugauagca auauagug-a ggaGAAu-gu g-u(u-ggga a)g-cacaau 781 |c(aaa)gaG GG(UGAUAAU )CCCGUA-uc u-aaaaacca uauuguggua cuaagc--ua 841 ac-------- ---------- -----gagAA GUAGGGCGGG A(CACGUG-A UA)UCCUGUU 901 UGAAGAA-GG G-GG(GCCCA U)CC-UCC-A AGGCUAA--- -AUACUCCUG AUUGACCGAU 961 AGUG-AAC-C AGUACU(GUG A)-AGGA-AA GGCGAAAA-G AACCCC(GGU GA-)GGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCUU-GUACG UACAA-G-CA GUGGGAGCGA --gg------ 1081 --------(- ---gcaa--) ---------- ----cc-uuG UGACUGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAU-AUUU- UGUAGC-GAG GUUAACC--( -GAAUA)--G 1201 G-GGAGCCGA AGG(GAAA-) CCGAGUCU(U AA-CU)GGGC GA-------- ---------- 1261 ---------- ------a-ua g-UUGCAAGG UAUA-GACCC GAAAC-CCG- GUGA-UCUAG 1321 CCAUGGG|CA GGUUGAAGGU UGGG(UAAC) AC-UAACUGG AGGACCGAAC C-GACUAAU( 1381 -GUUGAAAA) AUUAG|CGG- AUGAC-UUGU GGCUGGGGGU (-GAAAG)GC CAAUCAAACC 1441 GGGAGAUAGC UGGUUCUCCC CGAAAUCUAU (-UUAG)GUA GAGC|-CUUG AGGUG---A| 1501 -CAC|CUUUG G|GGGUAG|A GC-ACUGU-U UCGGCUA-GG |-GGGCC(AU CCC)GGCUUA 1561 CCAACCCGAU -GCAAACUAC GAA-UA-|CC A-A-A-G--A GUGA----U| ACU-CAGGAG 1621 ACACAC--GG C-GGGU(GCU AAC)GUCCGU -CGUG-GAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCC- AAGUC-UAUA -U-UAA-GUG ------GGAA ACGAAGUG-G 1741 GAAGGCUUA- GACAGCUAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUA GU-----CGA GU-CGG-CC- -UGC|GCGGA AGAU-GUAA- 1861 CGGGGCUGAA AUAUA-G|C| ACCGAAGCU| GCGG|cauca gaa----(uu ua-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -uucuguug- GG-UAGGGGA G|-----CGU 2221 U-GUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CGGA-A 2341 GAAGGUU-C- A-UC(-GAGA -)GGU--GGG CUGG|ACGUA U-CACAAGUG CGAAUGC-UG 2401 AC|AUA-AGU A--ACGAUAA AACGGG(UGA AAAA)CCCGU U|CGCC-GGA AGACCAAGGG 2461 UUCCUG-UCC AACG-(UUAA U)CG|G-GGC AGGGUGAGU| CGG|C-UCCU AAGGCGAGGC 2521 U(GAAA)-A- GCGU-AGUCG AUGG-GAAAC AGG-(UU-AA UAUU)C-CUG U|AC|uu-g- 2581 gu-aaa-gcu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga u------gug g--gga-cgg aguagguua- gguu-a-|uc g-cac(ug-- 2761 uugg-a-uau --)gu-gcgu -|uuaa---- ---------- ---guug-gu aggu------ 2821 -gggaag-uu uagg(ca-aa -u-)cc|g-- gacuuccuua ac-------- -aca-gagag 2881 aug-auga|c ga-|------ ------ggcu c(-uacg--) gagcu----- ------gaag 2941 --uaacu-ga uacc-aca-| cuuccaggaa a-agccac-u aagcgaaa-- ------gg-c 3001 -uuuac--ua a|A|CCGUAC UGAAAACC(G ACACA)GG|U GG-UCAGGU- A-(GAGAA)U 3061 ACUCAGGCGC ||UUGAGAGA ACUCGGGUG- ---------- ----AAGGAA CUAGGCAAAA 3121 UAGCACCGUA AC(-UUCG)G GAGAAGGUGC |gccggcgua -ga-uug--- -----uaagg 3181 g(-cuagc)c ccugaa---- ---gguu--- gaaccgg-U| C(GAA)GAUA CCAGCUG-GC 3241 UG|CAACU-- ---GU(UUAU UAAAA)ACAC AGCACUCUG| CAAACAC(GA AA------)G 3301 UGGACGU-AU AGGGUGUGA- UGCCUGCCCG GU|GCUG-GA A-GGUUAAUU GAUGGUGUCA 3361 UC-------- (G-AAA)--- --------GA GA-AGCACCU GAUCGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCAUAAU GA-UGGCCAG GCUGUCUCCA CCCGAGACUC 3541 A|GUGAAAUU |GAAAUCG-C CG(UGAAGAU G)CGGUGUAC CCGCGGC-UA GACGGAAAGA 3601 CCCCGUGA|A CCU-UUACUA U|AGCUUGAC ACU|GAACAU UGAAUUUUGA UGUGUAGGAU 3661 AGGUGGGAGC CUUUGAAG-- CAGUGAC(GC CA)GUCAUUG UGGAGGCGAC -C-UUGAAAU 3721 ACCACC|CUU U-AACGUUUG AUG-UUCUAA -CGAAGA--- -UGAC(--GA -AAC)-GUGG 3781 UCUCG-GACA GUGUCUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|UCCUC C(CAA-AGCG 3841 UAAC)GGAGG A|G|C|ACGA AGGUUUGC|U AAUCACGG(U CGGACA)UCG UGAGGU-UA| 3901 GU(G|CAAUG )GUAUAAGCA AGCUUAACUG CGAGAC(AGA CAA)GUCGAG CAGGUAC(GA 3961 AA)GU-AGGU |CAUAGUGAU CCGGUGGUUC UG(AAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UGA--UACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GAAG 4141 U---A)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGUGGUAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|CG-UAG 4261 GAUGAUU|GA -|UUGGGGC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG CAUCACUGGU GUUCCGGU|U GUGUC(GC-C A-)GACGCA- UUGCCGGGUA 4381 GCU-AAAUGC GGAAGAGAUA AGUGCU(GAA AGCAUCUA)A GCACGAAACU UGCCAA|GAG 4441 AUGAGUCAUC C|CU|--gac u(-uua--)a guc---aGU- AAGG|-GU|U GUUG-(UAGA 4501 CU-A)CGACG -UAGAUAG|G UUGG|GUGUG -UAAGUGAU- -(GUGA-)-- GUCAU|UG-A 4561 GCUA|A|CCA AUACUAAUU- GCCCGAGAG| GCUUAA-C-- --------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS H.influe.C 4759 bp RNA RNA 11-JAN-191 DEFINITION Haemophilus influenzae str. strain Rd. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus influenzae str. strain Rd. ORGANISM Haemophilus influenzae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U32755 L42023 LOCUS HIU32755 10559 bp DNA BCT 02-AUG-1995 DEFINITION Haemophilus influenzae htpX, pepQ, rrnC 16S, tRNA-Ile-B, tRNA-Ala-C, rrnC 23S, rrnC 5S genes from bases 766819 to 777377 of the complete genome. ACCESSION U32755 L42023 KEYWORDS . SOURCE Haemophilus influenzae (strain Rd). ORGANISM Haemophilus influenzae Eubacteria; Proteobacteria; gamma subdivision; Pasteurellaceae; Haemophilus. REFERENCE 1 (bases 1 to 10559) AUTHORS Fleischmann,R.D., Adams,M.D., White,O., Clayton,R.A., Kirkness,E.F., Kerlavage,A.R., Bult,C.J., Tomb,J.-F., Dougherty,B.A., Merrick,J.M., McKenney,K., Sutton,G., FitzHugh,W., Fields,C.A., Gocayne,J.D., Scott,J.D., Shirley,R., Liu,L.-I., Glodek,A., Kelley,J.M., Weidman,J.F., Phillips,C.A., Spriggs,T., Hedblom,E., Cotton,M.D., Utterback,T.R., Hanna,M.C., Nguyen,D.T., Saudek,D.M., Brandon,R.C., Fine,L.D., Fritchman,J.L., Fuhrmann,J.L., Geoghagen,N.S.M., Gnehm,C.L., McDonald,L.A., Small,K.V., Fraser,C.M., Smith,H.O. and Venter,J.C. TITLE Whole-genome random sequencing and assembly of Haemophilus influenzae Rd JOURNAL Science 269, 496-512 (1995) REFERENCE 2 (bases 1 to 10559) AUTHORS White,O. TITLE Direct Submission JOURNAL Submitted (31-JUL-1995) The Institute for Genomic Research, 932 Clopper Rd., Gaithersburg, MD 20878, USA COMMENT Address all correspondence to: J. Craig Venter The Institute for Genomic Research 932 Clopper Rd, Gaithersburg, MD, 20878 (New address as of Sept 9, 1995: 9712 Medical Center Dr, Rockville, MD, 20850) Jean-Francois Tomb, Brian A. Dougherty, and Hamilton O. Smith are with the Johns Hopkins University School of Medicine, Baltimore, MD, 21205. Joseph M. Merrick is with the State University of New York, Department of Microbiology, Buffalo, NY, 14214. Chris Fields' current address is The National Center for Genome Resources, Sante Fe, NM, 87505. Keith McKenney is with the National Institute for Standards and Technology, Gaithersburg, MD, 20878. All other authors are with The Institute for Genomic Research, 932 Clopper Rd, Gaithersburg, MD, 20878. Predicted open reading frames were determined using GeneMark software, kindly supplied by Mark Borodovsky, Georgia Institute of Technology, Atlanta, GA, 30332. e-mail: mark@amber.gatech.edu Submitted by: Robert D. Fleischmann e-mail: rdfleisc@tigr.org Annotation: Owen White e-mail: owhite@tigr.org Biological role information, putative identifications, sequence alignments, on-line name and sequence search capability are available at TIGR's World Wide Web site (URL: http://www.tigr.org/). NCBI gi: 925757 FEATURES Location/Qualifiers source 1..10559 /organism="Haemophilus influenzae" /strain="Rd" CDS 110..961 /gene="htpX" /standard_name="HI0720" /note="similar to GB:M58470 (Escherichia coli) percent identity: 66.3; identified by sequence similarity; putative; Method: conceptual translation supplied by author. NCBI gi: 925758" /codon_start=1 /product="heat shock protein" /translation="MMRILLFLATNMAVMLVLGIILSVTGIAGNSTGGILIMALLFGF AGSLISLFLSKTMALRSVDGEVITQPRNQTERWLIDTVSRQAQKAGIPMPDVAIYHSP DVNAFATGATKSNSLVAVSTGLLNNMTEAEAEAVLAHEISHISNGDMVTMALLQGVLN TFVIFLSRVIATAVASSRNNNGEETRSSGIYFLVSMVLEMLFGVLASIIAMWFSRYRE FRADAGSASLVGKEKMIMALQRLQQLHEPQNLEGSLNAFMINGKRSELFMSHPPLEKR IEALRNL" CDS complement(1003..1284) /standard_name="HI0721" /note="similar to SP:P37618 (Escherichia coli) percent identity: 60.8; identified by sequence similarity; putative; Method: conceptual translation supplied by author. NCBI gi: 925759" /codon_start=1 /product="hypothetical protein (SP:P37618)" /translation="MRYDMVLLFKRKKNMSEISVTQTLDTLGLRCPEPVMLVRKNIRH LNDGEILLIIADDPATTRDIPSFCQFMDHTLLQCEVEKPPFKYWVKRGK" CDS 1358..1978 /gene="pepQ" /standard_name="HI0722" /note="similar to GB:X54687 (Escherichia coli) percent identity: 53.7; identified by sequence similarity; putative; Method: conceptual translation supplied by author. NCBI gi: 925760" /codon_start=1 /product="proline dipeptidase" /translation="MAEYLVPKSAVVFEEEIKKSRFITYLQHTEGLEDARAFWAKIKQ EHPNARHHCWAAVAGKPTDSLQLGFSDDGEPAGTAGKPMLSALQGSQLGEISAVVVRY YGGILLGTGGLVRAYGNGVQQALKLIESEIKVERTLFKLDCDYGQLRLVQQLCEKYQV EILSQGFQANIHLILGISEKTIEAFSSELTEKSSGRLVIQLLEIGE" CDS 1981..3252 /standard_name="HI0723" /note="similar to GP:M87049_81 (Escherichia coli) percent identity: 55.6; identified by sequence similarity; putative; Method: conceptual translation supplied by author. NCBI gi: 925761" /codon_start=1 /product="hypothetical protein (GP:M87049_81)" /translation="MRILSIIRIIGILVMCFSGTMLVPAFVALIYGDGGGKAFMQAFM LSLIAGTLLWWPCHHHKQELRSRDGFLIVVAFWLVLGSLATLPLLLFDSPHLTIASAV FEAFSGLTTTGATVMTGLDNLPKSILFYRQFLQWLGGMGIIVLAVAIIPLLGIGGTQL YRAESSGPLKDQKSLPKISEVAKALWIIYASLTVLCAIAYWLSGMNLFDAIGHSFSTI SNGGFSTHDASIGYFNQASIYWVTTIFMLIGGVNFSLHISAFLALGKRNIWRNYWKDP EFRFFLTMQIIFIGIVSLSLYGYGLVSDINEAVTKGALQLTSMSMTAGYTIFDIDNLP PFIGLLLVISAVIGGCGGSTTGGLKAIRTLILWKQIDRELHSLIHPNLVQPIRIGKNR LAPRMIESIWAFFIILYWFIGGVFLLLFFVE" rRNA 3802..5340 /gene="rrnC 16S" /note="putative" /product="16S rRNA" tRNA 5420..5493 /gene="tRNA-Ile-B" /note="putative" /product="transfer RNA-Ile" tRNA 5582..5654 /gene="tRNA-Ala-C" /note="putative" /product="transfer RNA-Ala" rRNA 6064..8960 /gene="rrnC 23S" /note="putative" /product="23S rRNA" rRNA 9207..9321 /gene="rrnC 5S" /note="putative" /product="5S rRNA" CDS 9500..10060 /standard_name="HI0724" /note="similar to SP:P32130 (Escherichia coli) percent identity: 45.9; identified by sequence similarity; putative; Method: conceptual translation supplied by author. NCBI gi: 925762" /codon_start=1 /product="hypothetical protein (SP:P32130)" /translation="MARKKKTRRITDIMPIRKADKKIDITKARSGKKLTCYELDAKAR EDKKKRKHKGLASGSRHSAVEEKANKLQNEIKDPKIGSKKKIPLVVEFVNKPEKGQVI PVIKQVKKQDPMKELENLENNEILNELLDALDAGKTISKSDQQFVDECLDRISELMEE LGIEDEDESEDDLYRTFERMDINQFR" CDS 10064..10504 /standard_name="HI0725" /note="identified by GeneMark; putative; Method: conceptual translation supplied by author. NCBI gi: 925763" /codon_start=1 /product="H. influenzae predicted coding region HI0725" /translation="MIWIFFVIALFLVTGLTLYAIRLLKQLKVQKELIAKAKNNRVIR LKESIDIIARAMQSGECNLSEGVMRLTMLLRPFGKNLSSYPAMANLYEVVRDMPTHDD RKLLEKRERMRLDLARESAEAQFEKNIKQELYILLEDIKSIELI" BASE COUNT 3180 a 1809 c 2642 g 2928 t ORIGIN BASE COUNT 829 a 575 c 869 g 624 t 1862 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- ---------G UUAAGUGAC- --UAAGCGUA CAAGGUGGAU 121 G|CCUUGG|C AAUCAG|AG| GC-GAAGAAG GA|CGUG(CU AA-UC-)U|- GCG-AAAAGC 181 UUGGAU|-GA GUC(G-AU-A AGA-)GGCGU UU-AAU-CCA AGAUA|UCCG AAUGGG(GAA 241 A)CCC|agua gau-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---gaaga)- aucuacu-au ca-acaagu( 481 ga-AUUCA-- ua)gcu-ugu -u-g--aGG- C-aaAC|CG- GGAGAACU|G A(AACA)UCU 541 AAGUA-CCCC GAGGAAAAGA AAUC(-AACC --)GAGAU|U UC-GUCAGUA GC(GGCGA)G 601 CGA-AAG-CG AA-AGA-GCC AG-------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 --------ua agugauagca auauagug-a ggaGAAu-gu g-u(u-ggga a)g-cacaau 781 |c(aaa)gaG GG(UGAUAAU )CCCGUA-uc u-aaaaacca uauuguggua cuaagc--ua 841 ac-------- ---------- -----gagAA GUAGGGCGGG A(CACGUG-A UA)UCCUGUU 901 UGAAGAA-GG G-GG(GCCCA U)CC-UCC-A AGGCUAA--- -AUACUCCUG AUUGACCGAU 961 AGUG-AAC-C AGUACU(GUG A)-AGGA-AA GGCGAAAA-G AACCCC(GGU GA-)GGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCUU-GUACG UACAA-G-CA GUGGGAGCGA --gg------ 1081 --------(- ---gcaa--) ---------- ----cc-uuG UGACUGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAU-AUUU- UGUAGC-GAG GUUAACC--( -GAAUA)--G 1201 G-GGAGCCGA AGG(GAAA-) CCGAGUCU(U AA-CU)GGGC GA-------- ---------- 1261 ---------- ------a-ua g-UUGCAAGG UAUA-GACCC GAAAC-CCG- GUGA-UCUAG 1321 CCAUGGG|CA GGUUGAAGGU UGGG(UAAC) AC-UAACUGG AGGACCGAAC C-GACUAAU( 1381 -GUUGAAAA) AUUAG|CGG- AUGAC-UUGU GGCUGGGGGU (-GAAAG)GC CAAUCAAACC 1441 GGGAGAUAGC UGGUUCUCCC CGAAAUCUAU (-UUAG)GUA GAGC|-CUUG AGGUG---A| 1501 -CAC|CUUUG G|GGGUAG|A GC-ACUGU-U UCGGCUA-GG |-GGGCC(AU CCC)GGCUUA 1561 CCAACCCGAU -GCAAACUAC GAA-UA-|CC A-A-A-G--A GUGA----U| ACU-CAGGAG 1621 ACACAC--GG C-GGGU(GCU AAC)GUCCGU -CGUG-GAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCC- AAGUC-UAUA -U-UAA-GUG ------GGAA ACGAAGUG-G 1741 GAAGGCUUA- GACAGCUAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUA GU-----CGA GU-CGG-CC- -UGC|GCGGA AGAU-GUAA- 1861 CGGGGCUGAA AUAUA-G|C| ACCGAAGCU| GCGG|cauca gaa----(uu ua-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -uucuguug- GG-UAGGGGA G|-----CGU 2221 U-GUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CGGA-A 2341 GAAGGUU-C- A-UC(-GAGA -)GGU--GGG CUGG|ACGUA U-CACAAGUG CGAAUGC-UG 2401 AC|AUA-AGU A--ACGAUAA AACGGG(UGA AAAA)CCCGU U|CGCC-GGA AGACCAAGGG 2461 UUCCUG-UCC AACG-(UUAA U)CG|G-GGC AGGGUGAGU| CGG|C-UCCU AAGGCGAGGC 2521 U(GAAA)-A- GCGU-AGUCG AUGG-GAAAC AGG-(UU-AA UAUU)C-CUG U|AC|uu-g- 2581 gu-aaa-gcu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga u------gug g--gga-cgg aguagguua- gguu-a-|uc g-cac(ug-- 2761 uugg-a-uau --)gu-gcgu -|uuaa---- ---------- ---guug-gu aggu------ 2821 -gggaag-uu uagg(ca-aa -u-)cc|g-- gacuuccuua ac-------- -aca-gagag 2881 aug-auga|c ga-|------ ------ggcu c(-uacg--) gagcu----- ------gaag 2941 --uaacu-ga uacc-aca-| cuuccaggaa a-agccac-u aagcgaaa-- ------gg-c 3001 -uuuac--ua a|A|CCGUAC UGAAAACC(G ACACA)GG|U GG-UCAGGU- A-(GAGAA)U 3061 ACUCAGGCGC ||UUGAGAGA ACUCGGGUG- ---------- ----AAGGAA CUAGGCAAAA 3121 UAGCACCGUA AC(-UUCG)G GAGAAGGUGC |gccggcgua -ga-uug--- -----uaagg 3181 g(-cuagc)c ccugaa---- ---gguu--- gaaccgg-U| C(GAA)GAUA CCAGCUG-GC 3241 UG|CAACU-- ---GU(UUAU UAAAA)ACAC AGCACUCUG| CAAACAC(GA AA------)G 3301 UGGACGU-AU AGGGUGUGA- UGCCUGCCCG GU|GCUG-GA A-GGUUAAUU GAUGGUGUCA 3361 UC-------- (G-AAA)--- --------GA GA-AGCACCU GAUCGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCAUAAU GA-UGGCCAG GCUGUCUCCA CCCGAGACUC 3541 A|GUGAAAUU |GAAAUCG-C CG(UGAAGAU G)CGGUGUAC CCGCGGC-UA GACGGAAAGA 3601 CCCCGUGA|A CCU-UUACUA U|AGCUUGAC ACU|GAACAU UGAAUUUUGA UGUGUAGGAU 3661 AGGUGGGAGC CUUUGAAG-- CAGUGAC(GC CA)GUCAUUG UGGAGGCGAC -C-UUGAAAU 3721 ACCACC|CUU U-AACGUUUG AUG-UUCUAA -CGAAGA--- -UGAC(--GA -AAC)-GUGG 3781 UCUCG-GACA GUGUCUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|UCCUC C(CAA-AGCG 3841 UAAC)GGAGG A|G|C|ACGA AGGUUUGC|U AAUCACGG(U CGGACA)UCG UGAGGU-UA| 3901 GU(G|CAAUG )GUAUAAGCA AGCUUAACUG CGAGAC(AGA CAA)GUCGAG CAGGUAC(GA 3961 AA)GU-AGGU |CAUAGUGAU CCGGUGGUUC UG(AAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UGA--UACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GAAG 4141 U---A)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGUGGUAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|CG-UAG 4261 GAUGAUU|GA -|UUGGGGC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG CAUCACUGGU GUUCCGGU|U GUGUC(GC-C A-)GACGCA- UUGCCGGGUA 4381 GCU-AAAUGC GGAAGAGAUA AGUGCU(GAA AGCAUCUA)A GCACGAAACU UGCCAA|GAG 4441 AUGAGUCAUC C|CU|--gac u(-uua--)a guc---aGU- AAGG|-GU|U GUUG-(UAGA 4501 CU-A)CGACG -UAGAUAG|G UUGG|GUGUG -UAAGUGAU- -(GUGA-)-- GUCAU|UG-A 4561 GCUA|A|CCA AUACUAAUU- GCCCGAGAG| GCUUAA-C-- --------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS H.influe.B 4759 bp RNA RNA 11-JAN-191 DEFINITION Haemophilus influenzae str. strain Rd. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus influenzae str. strain Rd. ORGANISM Haemophilus influenzae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U32745 L42023 LOCUS HIU32745 10385 bp DNA BCT 02-AUG-1995 DEFINITION Haemophilus influenzae tRNA-Glu-C, rrnB 23S, rrnB 5S, def, fmt, trkA, rpoE, mclA genes from bases 658096 to 668480 of the complete genome. ACCESSION U32745 L42023 KEYWORDS . SOURCE Haemophilus influenzae (strain Rd). ORGANISM Haemophilus influenzae Eubacteria; Proteobacteria; gamma subdivision; Pasteurellaceae; Haemophilus. REFERENCE 1 (bases 1 to 10385) AUTHORS Fleischmann,R.D., Adams,M.D., White,O., Clayton,R.A., Kirkness,E.F., Kerlavage,A.R., Bult,C.J., Tomb,J.-F., Dougherty,B.A., Merrick,J.M., McKenney,K., Sutton,G., FitzHugh,W., Fields,C.A., Gocayne,J.D., Scott,J.D., Shirley,R., Liu,L.-I., Glodek,A., Kelley,J.M., Weidman,J.F., Phillips,C.A., Spriggs,T., Hedblom,E., Cotton,M.D., Utterback,T.R., Hanna,M.C., Nguyen,D.T., Saudek,D.M., Brandon,R.C., Fine,L.D., Fritchman,J.L., Fuhrmann,J.L., Geoghagen,N.S.M., Gnehm,C.L., McDonald,L.A., Small,K.V., Fraser,C.M., Smith,H.O. and Venter,J.C. TITLE Whole-genome random sequencing and assembly of Haemophilus influenzae Rd JOURNAL Science 269, 496-512 (1995) REFERENCE 2 (bases 1 to 10385) AUTHORS White,O. TITLE Direct Submission JOURNAL Submitted (31-JUL-1995) The Institute for Genomic Research, 932 Clopper Rd., Gaithersburg, MD 20878, USA COMMENT Address all correspondence to: J. Craig Venter The Institute for Genomic Research 932 Clopper Rd, Gaithersburg, MD, 20878 (New address as of Sept 9, 1995: 9712 Medical Center Dr, Rockville, MD, 20850) Jean-Francois Tomb, Brian A. Dougherty, and Hamilton O. Smith are with the Johns Hopkins University School of Medicine, Baltimore, MD, 21205. Joseph M. Merrick is with the State University of New York, Department of Microbiology, Buffalo, NY, 14214. Chris Fields' current address is The National Center for Genome Resources, Sante Fe, NM, 87505. Keith McKenney is with the National Institute for Standards and Technology, Gaithersburg, MD, 20878. All other authors are with The Institute for Genomic Research, 932 Clopper Rd, Gaithersburg, MD, 20878. Predicted open reading frames were determined using GeneMark software, kindly supplied by Mark Borodovsky, Georgia Institute of Technology, Atlanta, GA, 30332. e-mail: mark@amber.gatech.edu Submitted by: Robert D. Fleischmann e-mail: rdfleisc@tigr.org Annotation: Owen White e-mail: owhite@tigr.org Biological role information, putative identifications, sequence alignments, on-line name and sequence search capability are available at TIGR's World Wide Web site (URL: http://www.tigr.org/). NCBI gi: 925655 FEATURES Location/Qualifiers source 1..10385 /organism="Haemophilus influenzae" /strain="Rd" tRNA 92..164 /gene="tRNA-Glu-C" /note="putative" /product="transfer RNA-Glu" rRNA 439..3335 /gene="rrnB 23S" /note="putative" /product="23S rRNA" rRNA 3582..3696 /gene="rrnB 5S" /note="putative" /product="5S rRNA" CDS 3923..4432 /gene="def" /standard_name="HI0622" /note="similar to SP:P27251 (Escherichia coli) percent identity: 65.1; identified by sequence similarity; putative; Method: conceptual translation supplied by author. NCBI gi: 925656" /codon_start=1 /product="polypeptide deformylase (formylmethionine deformylase)" /translation="MTALNVLIYPDDHLKVVCEPVTKVNDAIRKIVDDMFDTMYQEKG IGLAAPQVDILQRIITIDVEGDKQNQFVLINPEILASEGETGIEEGCLSIPGFRALVP RKEKVTVRALDRDGKEFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLI KYKKQIAKS" CDS 4525..5481 /gene="fmt" /standard_name="HI0623" /note="similar to GB:X63666 (Escherichia coli) percent identity: 65.0; identified by sequence similarity; putative; Method: conceptual translation supplied by author. NCBI gi: 925657" /codon_start=1 /product="methionyl-tRNA formyltransferase" /translation="MKSLNIIFAGTPDFAAQHLQAILNSQHNVIAVYTQPDKPAGRGK KLQASPVKQLAEQNNIPVYQPKSLRKEEAQSELKALNADVMVVVAYGLILPKAVLDAP RLGCLNVHGSILPRWRGAAPIQRSIWAGDVQTGVTIMQMDEGLDTGDMLHKVYCDILP TETSTSLYNKLAELAPSALIDVLDNLENGKFIAEKQDGSQSNYAEKLSKEEAQLNWSL SAMQLERNIRAFNPWPIAYFSTEDKDGNAHTLKVYQAKVLPHQDKPAGTILSADKNGI QIATVDGVLNLLQLQSAGKKPMSAQDLLNGRAEWFTIGKVLA" CDS 5481..6836 /standard_name="HI0624" /note="similar to SP:P23866 (Escherichia coli) percent identity: 58.9; identified by sequence similarity; putative; Method: conceptual translation supplied by author. NCBI gi: 925658" /codon_start=1 /product="hypothetical protein (SP:P23866)" /translation="MKKFSSKTIKAKNSVKMTALSTRAIAANLILQVLDEGKSLSALI PEVQLSVKAQDLPLLQEICFGVCRVLPRLEQIIKRLVDKPLKGKTRIVHCLLLVGLYQ LLYMRVPAHAAVDEVVNATKSLKSDSFRGLVNAVLRRFLREQDEILAIIDKNWQTLHP EWFVNKLKKAYPNWREIIEANNQKPPMWLRVNSQKNALETYRTLLEEQGVSSKTSHHP NALCLDIPIAVQKLPHFEEGAVTVQDLSAQWAATLLEPKNEEWILDACAAPGGKTTHI LELAPQANVIALDVESHRLKRVEENLERLNQQAIVVCGDASKPDEWLAEIGKSAAKFD RILLDAPCSATGVIRRHPDIKWLRKETDIAQLVELQKKILSALWEKLKPNGVLLYATC SVLPEENCEQIQAFLNAHADAELLSLPFSDDKSAVGFQFIPQPNSGDGFYYAKLLKRA S" misc_feature 6849..8226 /gene="trkA" /standard_name="HI0625" /note="suspected CDS--internal stop codons preclude translation; Alignment algorithm indicates unresolved frameshift when compared to database match. Alignment available at (URL: http://www.tigr.org/); similar to SP:P23868 (Escherichia coli) percent identity: 65.8; identified by sequence similarity; putative" /product="TRK system potassium uptake protein" CDS 8299..8685 /standard_name="HI0626" /note="similar to GB:L29458 (Escherichia coli) percent identity: 70.8; identified by sequence similarity; putative; Method: conceptual translation supplied by author. NCBI gi: 925659" /codon_start=1 /product="hypothetical protein (GB:L29458_1)" /translation="MNFIKEFREFAMRGNVVDMAVGVIIGSAFGKIVSSLVSDIFTPV LGILTGGIDFKDMKFVLAQAQGDVPAVTLNYGLFIQNVIDFIIIAFAIFMMIKVINKV RKPEEKKTAPKAETLLTEIRDLLKNK" CDS 8775..9032 /standard_name="HI0627" /note="identified by GeneMark; putative; Method: conceptual translation supplied by author. NCBI gi: 925660" /codon_start=1 /product="H. influenzae predicted coding region HI0627" /translation="MKKYNKLRIEWDCRRGMLELDKIIMPFYLTHFHELTDDKKDIFI RLLASTDLQLFSWFFNLAKSQDVELQMMVEYIQKVQKIIIN" CDS 9140..9709 /gene="rpoE" /standard_name="HI0628" /note="similar to SP:P34086 (Escherichia coli) percent identity: 73.0; identified by sequence similarity; putative; Method: conceptual translation supplied by author. NCBI gi: 925661" /codon_start=1 /product="RNA polymerase sigma-E factor" /translation="MAEQLTDQALVERVQQGDKKAFNLLVSRYQNKVAGLLTRYVSRN DIPDVVQESFIKAYRSIESFRGESAFYTWLYRIAVNTAKNYLTAQGRRPPNEDILAED AENYDVGTHLRDVDTPENEMLSSELERIVFDTIHNLPEDLKTAITLRELEGLSYEDIA EIMDCPVGTVRSRIFRAREMIENKIQPLM" CDS 9734..10321 /gene="mclA" /standard_name="HI0629" /note="similar to GB:U10148 (Escherichia coli) percent identity: 40.1; identified by sequence similarity; putative; Method: conceptual translation supplied by author. NCBI gi: 925662" /codon_start=1 /product="negative rpo regulator" /translation="MQKEQLSAYMDGEQVETDLIDALLRDEELQASWHSFHTVRSVMR KESAVFLGADFTAKMADLIELEDVKKVDVIAVSQPEPEDAHNSVFMQKLKAFFAPMTQ VAVAAGVCLVAVLGVQSFNNKNDASNLPETPVLQTLPFNNAVQEVSYNAPSKDTLTSD QLEKKSRRIGAMLQNYELQRRMHSDALDVSSSQVR" BASE COUNT 3273 a 1774 c 2485 g 2853 t ORIGIN BASE COUNT 829 a 575 c 869 g 624 t 1862 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- ---------G UUAAGUGAC- --UAAGCGUA CAAGGUGGAU 121 G|CCUUGG|C AAUCAG|AG| GC-GAAGAAG GA|CGUG(CU AA-UC-)U|- GCG-AAAAGC 181 UUGGAU|-GA GUC(G-AU-A AGA-)GGCGU UU-AAU-CCA AGAUA|UCCG AAUGGG(GAA 241 A)CCC|agua gau-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---gaaga)- aucuacu-au ca-acaagu( 481 ga-AUUCA-- ua)gcu-ugu -u-g--aGG- C-aaAC|CG- GGAGAACU|G A(AACA)UCU 541 AAGUA-CCCC GAGGAAAAGA AAUC(-AACC --)GAGAU|U UC-GUCAGUA GC(GGCGA)G 601 CGA-AAG-CG AA-AGA-GCC AG-------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 --------ua agugauagca auauagug-a ggaGAAu-gu g-u(u-ggga a)g-cacaau 781 |c(aaa)gaG GG(UGAUAAU )CCCGUA-uc u-aaaaacca uauuguggua cuaagc--ua 841 ac-------- ---------- -----gagAA GUAGGGCGGG A(CACGUG-A UA)UCCUGUU 901 UGAAGAA-GG G-GG(GCCCA U)CC-UCC-A AGGCUAA--- -AUACUCCUG AUUGACCGAU 961 AGUG-AAC-C AGUACU(GUG A)-AGGA-AA GGCGAAAA-G AACCCC(GGU GA-)GGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCUU-GUACG UACAA-G-CA GUGGGAGCGA --gg------ 1081 --------(- ---gcaa--) ---------- ----cc-uuG UGACUGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAU-AUUU- UGUAGC-GAG GUUAACC--( -GAAUA)--G 1201 G-GGAGCCGA AGG(GAAA-) CCGAGUCU(U AA-CU)GGGC GA-------- ---------- 1261 ---------- ------a-ua g-UUGCAAGG UAUA-GACCC GAAAC-CCG- GUGA-UCUAG 1321 CCAUGGG|CA GGUUGAAGGU UGGG(UAAC) AC-UAACUGG AGGACCGAAC C-GACUAAU( 1381 -GUUGAAAA) AUUAG|CGG- AUGAC-UUGU GGCUGGGGGU (-GAAAG)GC CAAUCAAACC 1441 GGGAGAUAGC UGGUUCUCCC CGAAAUCUAU (-UUAG)GUA GAGC|-CUUG AGGUG---A| 1501 -CAC|CUUUG G|GGGUAG|A GC-ACUGU-U UCGGCUA-GG |-GGGCC(AU CCC)GGCUUA 1561 CCAACCCGAU -GCAAACUAC GAA-UA-|CC A-A-A-G--A GUGA----U| ACU-CAGGAG 1621 ACACAC--GG C-GGGU(GCU AAC)GUCCGU -CGUG-GAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCC- AAGUC-UAUA -U-UAA-GUG ------GGAA ACGAAGUG-G 1741 GAAGGCUUA- GACAGCUAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUA GU-----CGA GU-CGG-CC- -UGC|GCGGA AGAU-GUAA- 1861 CGGGGCUGAA AUAUA-G|C| ACCGAAGCU| GCGG|cauca gaa----(uu ua-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -uucuguug- GG-UAGGGGA G|-----CGU 2221 U-GUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CGGA-A 2341 GAAGGUU-C- A-UC(-GAGA -)GGU--GGG CUGG|ACGUA U-CACAAGUG CGAAUGC-UG 2401 AC|AUA-AGU A--ACGAUAA AACGGG(UGA AAAA)CCCGU U|CGCC-GGA AGACCAAGGG 2461 UUCCUG-UCC AACG-(UUAA U)CG|G-GGC AGGGUGAGU| CGG|C-UCCU AAGGCGAGGC 2521 U(GAAA)-A- GCGU-AGUCG AUGG-GAAAC AGG-(UU-AA UAUU)C-CUG U|AC|uu-g- 2581 gu-aaa-gcu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga u------gug g--gga-cgg aguagguua- gguu-a-|uc g-cac(ug-- 2761 uugg-a-uau --)gu-gcgu -|uuaa---- ---------- ---guug-gu aggu------ 2821 -gggaag-uu uagg(ca-aa -u-)cc|g-- gacuuccuua ac-------- -aca-gagag 2881 aug-auga|c ga-|------ ------ggcu c(-uacg--) gagcu----- ------gaag 2941 --uaacu-ga uacc-aca-| cuuccaggaa a-agccac-u aagcgaaa-- ------gg-c 3001 -uuuac--ua a|A|CCGUAC UGAAAACC(G ACACA)GG|U GG-UCAGGU- A-(GAGAA)U 3061 ACUCAGGCGC ||UUGAGAGA ACUCGGGUG- ---------- ----AAGGAA CUAGGCAAAA 3121 UAGCACCGUA AC(-UUCG)G GAGAAGGUGC |gccggcgua -ga-uug--- -----uaagg 3181 g(-cuagc)c ccugaa---- ---gguu--- gaaccgg-U| C(GAA)GAUA CCAGCUG-GC 3241 UG|CAACU-- ---GU(UUAU UAAAA)ACAC AGCACUCUG| CAAACAC(GA AA------)G 3301 UGGACGU-AU AGGGUGUGA- UGCCUGCCCG GU|GCUG-GA A-GGUUAAUU GAUGGUGUCA 3361 UC-------- (G-AAA)--- --------GA GA-AGCACCU GAUCGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCAUAAU GA-UGGCCAG GCUGUCUCCA CCCGAGACUC 3541 A|GUGAAAUU |GAAAUCG-C CG(UGAAGAU G)CGGUGUAC CCGCGGC-UA GACGGAAAGA 3601 CCCCGUGA|A CCU-UUACUA U|AGCUUGAC ACU|GAACAU UGAAUUUUGA UGUGUAGGAU 3661 AGGUGGGAGC CUUUGAAG-- CAGUGAC(GC CA)GUCAUUG UGGAGGCGAC -C-UUGAAAU 3721 ACCACC|CUU U-AACGUUUG AUG-UUCUAA -CGAAGA--- -UGAC(--GA -AAC)-GUGG 3781 UCUCG-GACA GUGUCUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|UCCUC C(CAA-AGCG 3841 UAAC)GGAGG A|G|C|ACGA AGGUUUGC|U AAUCACGG(U CGGACA)UCG UGAGGU-UA| 3901 GU(G|CAAUG )GUAUAAGCA AGCUUAACUG CGAGAC(AGA CAA)GUCGAG CAGGUAC(GA 3961 AA)GU-AGGU |CAUAGUGAU CCGGUGGUUC UG(AAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UGA--UACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GAAG 4141 U---A)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGUGGUAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|CG-UAG 4261 GAUGAUU|GA -|UUGGGGC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG CAUCACUGGU GUUCCGGU|U GUGUC(GC-C A-)GACGCA- UUGCCGGGUA 4381 GCU-AAAUGC GGAAGAGAUA AGUGCU(GAA AGCAUCUA)A GCACGAAACU UGCCAA|GAG 4441 AUGAGUCAUC C|CU|--gac u(-uua--)a guc---aGU- AAGG|-GU|U GUUG-(UAGA 4501 CU-A)CGACG -UAGAUAG|G UUGG|GUGUG -UAAGUGAU- -(GUGA-)-- GUCAU|UG-A 4561 GCUA|A|CCA AUACUAAUU- GCCCGAGAG| GCUUAA-C-- --------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS H.influe.A 4759 bp RNA RNA 11-JAN-191 DEFINITION Haemophilus influenzae str. strain Rd. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus influenzae str. strain Rd. ORGANISM Haemophilus influenzae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U32742 L42023 LOCUS HIU32742 10375 bp DNA BCT 02-AUG-1995 DEFINITION Haemophilus influenzae tRNA-Ile-A, tRNA-Ala-B, rrnA 23S, rrnA 5S, tRNA-Asp-C, tRNA-Trp, hemY, hemX, cyaA genes from bases 624788 to 635162 of the complete genome. ACCESSION U32742 L42023 KEYWORDS . SOURCE Haemophilus influenzae (strain Rd). ORGANISM Haemophilus influenzae Eubacteria; Proteobacteria; gamma subdivision; Pasteurellaceae; Haemophilus. REFERENCE 1 (bases 1 to 10375) AUTHORS Fleischmann,R.D., Adams,M.D., White,O., Clayton,R.A., Kirkness,E.F., Kerlavage,A.R., Bult,C.J., Tomb,J.-F., Dougherty,B.A., Merrick,J.M., McKenney,K., Sutton,G., FitzHugh,W., Fields,C.A., Gocayne,J.D., Scott,J.D., Shirley,R., Liu,L.-I., Glodek,A., Kelley,J.M., Weidman,J.F., Phillips,C.A., Spriggs,T., Hedblom,E., Cotton,M.D., Utterback,T.R., Hanna,M.C., Nguyen,D.T., Saudek,D.M., Brandon,R.C., Fine,L.D., Fritchman,J.L., Fuhrmann,J.L., Geoghagen,N.S.M., Gnehm,C.L., McDonald,L.A., Small,K.V., Fraser,C.M., Smith,H.O. and Venter,J.C. TITLE Whole-genome random sequencing and assembly of Haemophilus influenzae Rd JOURNAL Science 269, 496-512 (1995) REFERENCE 2 (bases 1 to 10375) AUTHORS White,O. TITLE Direct Submission JOURNAL Submitted (31-JUL-1995) The Institute for Genomic Research, 932 Clopper Rd., Gaithersburg, MD 20878, USA COMMENT Address all correspondence to: J. Craig Venter The Institute for Genomic Research 932 Clopper Rd, Gaithersburg, MD, 20878 (New address as of Sept 9, 1995: 9712 Medical Center Dr, Rockville, MD, 20850) Jean-Francois Tomb, Brian A. Dougherty, and Hamilton O. Smith are with the Johns Hopkins University School of Medicine, Baltimore, MD, 21205. Joseph M. Merrick is with the State University of New York, Department of Microbiology, Buffalo, NY, 14214. Chris Fields' current address is The National Center for Genome Resources, Sante Fe, NM, 87505. Keith McKenney is with the National Institute for Standards and Technology, Gaithersburg, MD, 20878. All other authors are with The Institute for Genomic Research, 932 Clopper Rd, Gaithersburg, MD, 20878. Predicted open reading frames were determined using GeneMark software, kindly supplied by Mark Borodovsky, Georgia Institute of Technology, Atlanta, GA, 30332. e-mail: mark@amber.gatech.edu Submitted by: Robert D. Fleischmann e-mail: rdfleisc@tigr.org Annotation: Owen White e-mail: owhite@tigr.org Biological role information, putative identifications, sequence alignments, on-line name and sequence search capability are available at TIGR's World Wide Web site (URL: http://www.tigr.org/). NCBI gi: 925632 FEATURES Location/Qualifiers source 1..10375 /organism="Haemophilus influenzae" /strain="Rd" tRNA 66..139 /gene="tRNA-Ile-A" /note="putative" /product="transfer RNA-Ile" tRNA 228..300 /gene="tRNA-Ala-B" /note="putative" /product="transfer RNA-Ala" rRNA 710..3606 /gene="rrnA 23S" /note="putative" /product="23S rRNA" rRNA 3853..3967 /gene="rrnA 5S" /note="putative" /product="5S rRNA" tRNA 4145..4218 /gene="tRNA-Asp-C" /note="putative" /product="transfer RNA-Asp" tRNA 4250..4322 /gene="tRNA-Trp" /note="putative" /product="transfer RNA-Trp" CDS complement(4968..6254) /gene="hemY" /standard_name="HI0602" /note="similar to GP:M87049_33 (Escherichia coli) percent identity: 38.9; identified by sequence similarity; putative; Method: conceptual translation supplied by author. NCBI gi: 925633" /codon_start=1 /product="protoporphyrinogen oxidase (hemG) homolog" /translation="MFRVLFLMLTLLVGLVAGPYISGQQGYVRIETANRIIEMSITTL VIFFIISLAIIYAFEWGVTRFFRLSRSSYQWFSNRKRVKAQKQTLEGLVKMDEGDYAK AEKLIGKNAKHSAEPVLNLIKAAEAAQQRGDEFSANRYLIEATELAGSDNLLVEIART RILLQQNKLPAARSSVDSLLEMARRNKEVLKLAVEIYLRSKAYQALDKILDNVANSGL FNDEEFKDLRSKTENGLLDEKMNEEGIDGLLTWWNQQPRHRRNNIELKISLIQRLIDC NDHESATELTFEILKKLGDNTAISLPLCTQITRLQPEDNSKLLKLIEKRAKRVDEKQK CCINRALGYLYVRNNEFIKAADVFKNVIACPEQLEQNDLMMASYVFEQAGDKALAEQV RQESLKSVMAIQDVIPESAEEKTEENSTALLESKSE" CDS complement(6786..7478) /gene="hemX" /standard_name="HI0603" /note="similar to GB:M87049 (Escherichia coli) percent identity: 37.0; identified by sequence similarity; putative; Method: conceptual translation supplied by author. NCBI gi: 925634" /codon_start=1 /product="uroporphyrinogen III methylase" /translation="MAKEQPNDLTEQLTDTPKTAVEQAETMQSVPQTIVKKTGTALSL LAILVALGIGGAGYYFGQQQMAKIQQKLTALENQTGANLSSNNTNNNKRLTQLEQSLK TAQENIAQLEQLIVSKTGEITSLQTQMKQVSQLAIAQQPSDWLFSEADFLLNNALRKL VLDNDVDTAVSLLKLADETLVKVNNSQANEIRSAINQDLKQLLSLSSVDQNAIMQKLS QLANTVDELQRL" CDS 7783..10314 /gene="cyaA" /standard_name="HI0604" /note="similar to GB:L23824 (Haemophilus influenzae) percent identity: 100.0; identified by sequence similarity; putative; Method: conceptual translation supplied by author. NCBI gi: 925635" /codon_start=1 /product="adenylate cyclase" /translation="MECNLAQAKQWVSALDQRRFERALQGSGDAFQHVLAIVPLLLHL NHPQLPGYVIHAPSGIASFLASDYQKKWLTNEYGIHYADHKPSTLKSAVNFHEVFPPI LGVYVMGSFGSISQTSSSDLDTWICVRDGLSLDEYTLLTQKAKRISEWAMQFNVEINF YLMDQQRFRNEHYADPLTIENSGSAQYMLLLDEFYRSAVRLAGKPLLWLHLWVENEKD YEKEVARLITEGEIDPNDWVDFGGLGQFSANEYFGASLWHLYKGIDSPYKSVLKILLL EAYSKEYPNTCLIARTFKRDLLAGNTNPDHHFDPYIAILAKVTQYLTALSEFKRLDFV HRCFYVKATEDFARYQANNWRIRYMEILAQEWGWSAETVKHLNKRPFWKIKAVKENHD NIMKFLMLSYRNLVEFARKHHIHSSVVPQDINILSRKLYTAFEELPGKVSLLNTQISH NLSEAHLTFVEVRGNKHFKDGWYLINQPIHHIMFSKERVIEYGESLNKLVSWAYFNHL LTEKTELSIFSKNVTLSTLQRFVTNLRQSFPSTIAKQPKNSDLLNQCEIRSLFIAINL TTDPTSKVEEVLTGISSRDLFSFGSLEQSLVGSIDFTYRNVWNEIRTLHFEGQNAILL ALKVLSNKIYRGVNRPDSIQVYCYSERYRQDLRQLVMGLVNRCVSIQVGDIQQPCQTS RLRVAGKNWQLFFEDRGISLQEIGNESVCNEAESAVDFDEVLQTPIEDGETNQESRRY PPEMDAFASEGFLQFFFEDNSDHSFNVYILDESNHLEIYRHCDGEKDEKVREINQLYQ NAKQEGDKNPYNIVQHNFNYPQFYQLQNGKNGISIVPFKFRQMNK" BASE COUNT 3136 a 1879 c 2303 g 3056 t 1 others ORIGIN BASE COUNT 829 a 575 c 869 g 624 t 1862 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- ---------G UUAAGUGAC- --UAAGCGUA CAAGGUGGAU 121 G|CCUUGG|C AAUCAG|AG| GC-GAAGAAG GA|CGUG(CU AA-UC-)U|- GCG-AAAAGC 181 UUGGAU|-GA GUC(G-AU-A AGA-)GGCGU UU-AAU-CCA AGAUA|UCCG AAUGGG(GAA 241 A)CCC|agua gau-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---gaaga)- aucuacu-au ca-acaagu( 481 ga-AUUCA-- ua)gcu-ugu -u-g--aGG- C-aaAC|CG- GGAGAACU|G A(AACA)UCU 541 AAGUA-CCCC GAGGAAAAGA AAUC(-AACC --)GAGAU|U UC-GUCAGUA GC(GGCGA)G 601 CGA-AAG-CG AA-AGA-GCC AG-------- ---------- -----(---- -)-------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 --------ua agugauagca auauagug-a ggaGAAu-gu g-u(u-ggga a)g-cacaau 781 |c(aaa)gaG GG(UGAUAAU )CCCGUA-uc u-aaaaacca uauuguggua cuaagc--ua 841 ac-------- ---------- -----gagAA GUAGGGCGGG A(CACGUG-A UA)UCCUGUU 901 UGAAGAA-GG G-GG(GCCCA U)CC-UCC-A AGGCUAA--- -AUACUCCUG AUUGACCGAU 961 AGUG-AAC-C AGUACU(GUG A)-AGGA-AA GGCGAAAA-G AACCCC(GGU GA-)GGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCUU-GUACG UACAA-G-CA GUGGGAGCGA --gg------ 1081 --------(- ---gcaa--) ---------- ----cc-UUG UGACUGCGUA CCU(UUU-GU 1141 AU|A)AUGG| -GUCAGCGAC UUAU-AUUU- UGUAGC-GAG GUUAACC--( -GAAUA)--G 1201 G-GGAGCCGA AGG(GAAA-) CCGAGUCU(U AA-CU)GGGC GA-------- ---------- 1261 ---------- ------a-ua g-UUGCAAGG UAUA-GACCC GAAAC-CCG- GUGA-UCUAG 1321 CCAUGGG|CA GGUUGAAGGU UGGG(UAAC) AC-UAACUGG AGGACCGAAC C-GACUAAU( 1381 -GUUGAAAA) AUUAG|CGG- AUGAC-UUGU GGCUGGGGGU (-GAAAG)GC CAAUCAAACC 1441 GGGAGAUAGC UGGUUCUCCC CGAAAUCUAU (-UUAG)GUA GAGC|-CUUG AGGUg---A| 1501 -cac|CUUUG G|GGGUAG|A GC-ACUGU-U UCGGCUA-GG |-GGGCC(AU CCC)GGCUUA 1561 CCAACCCGAU -GCAAACUAC GAA-UA-|CC A-A-A-G--A GUGA----U| ACU-CAGGAG 1621 ACACAC--GG C-GGGU(GCU AAC)GUCCGU -CGUG-GAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCC- AAGUC-UAUA -U-UAA-GUG ------GGAA ACGAAGUG-G 1741 GAAGGCUUA- GACAGCUAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUA GU-----CGA GU-CGG-CC- -UGC|GCGGA AGAU-GUAA- 1861 CGGGGCUGAA AUAUA-G|C| ACCGAAGCU| GCGG|cauca gaa----(uu ua-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -uucuguug- GG-UAGGGGA G|-----CGU 2221 U-GUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CGGA-A 2341 GAAGGUU-C- A-UC(-GAGA -)GGU--GGG CUGG|ACGUA U-CACAAGUG CGAAUGC-UG 2401 AC|AUA-AGU A--ACGAUAA AACGGG(UGA AAAA)CCCGU U|CGCC-GGA AGACCAAGGG 2461 UUCCUG-UCC AACG-(UUAA U)CG|G-GGC AGGGUGAGU| CGG|C-UCCU AAGGCGAGGC 2521 U(GAAA)-A- GCGU-AGUCG AUGG-GAAAC AGG-(UU-AA UAUU)C-CUG U|AC|uu-g- 2581 gu-aaa-gcu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga u------gug g--gga-cgg aguagguua- gguu-a-|uc g-cac(ug-- 2761 uugg-a-uau --)gu-gcgu -|uuaa---- ---------- ---guug-gu aggu------ 2821 -gggaag-uu uagg(ca-aa -u-)cc|g-- gacuuccuua ac-------- -aca-gagag 2881 aug-auga|c ga-|------ ------ggcu c(-uacg--) gagcu----- ------gaag 2941 --uaacu-ga uacc-aca-| cuuccaggaa a-agccac-u aagcgaaa-- ------gg-c 3001 -uuuac--ua a|A|CCGUAC UGAAAACC(G ACACA)GG|U GG-UCAGGU- A-(GAGAA)U 3061 ACUCAGGCGC ||UUGAGAGA ACUCGGGUG- ---------- ----AAGGAA CUAGGCAAAA 3121 UAGCACCGUA AC(-UUCG)G GAGAAGGUGC |gccggcgua -ga-uug--- -----uaagg 3181 g(-cuagc)c ccugaa---- ---gguu--- gaaccgg-U| C(GAA)GAUA CCAGCUG-GC 3241 UG|CAACU-- ---GU(UUAU UAAAA)ACAC AGCACUCUG| CAAACAC(GA AA------)G 3301 UGGACGU-AU AGGGUGUGA- UGCCUGCCCG GU|GCUG-GA A-GGUUAAUU GAUGGUGUCA 3361 UC-------- (G-AAA)--- --------GA GA-AGCACCU GAUCGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCAUAAU GA-UGGCCAG GCUGUCUCCA CCCGAGACUC 3541 A|GUGAAAUU |GAAAUCG-C CG(UGAAGAU G)CGGUGUAC CCGCGGC-UA GACGGAAAGA 3601 CCCCGUGA|A CCU-UUACUA U|AGCUUGAC ACU|GAACAU UGAAUUUUGA UGUGUAGGAU 3661 AGGUGGGAGC CUUUGAAG-- CAGUGAC(GC CA)GUCAUUG UGGAGGCGAC -C-UUGAAAU 3721 ACCACC|CUU U-AACGUUUG AUG-UUCUAA -CGAAGA--- -UGAC(--GA -AAC)-GUGG 3781 UCUCG-GACA GUGUCUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|UCCUC C(CAA-AGCG 3841 UAAC)GGAGG A|G|C|ACGA AGGUUUGC|U AAUCACGG(U CGGACA)UCG UGAGGU-UA| 3901 GU(G|CAAUG )GUAUAAGCA AGCUUAACUG CGAGAC(AGA CAA)GUCGAG CAGGUAC(GA 3961 AA)GU-AGGU |CAUAGUGAU CCGGUGGUUC UG(AAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UGA--UACCG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCG-GU GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GAAG 4141 U---A)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGUGGUAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|CG-UAG 4261 GAUGAUU|GA -|UUGGGGC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG CAUCACUGGU GUUCCGGU|U GUGUC(GC-C A-)GACGCA- UUGCCGGGUA 4381 GCU-AAAUGC GGAAGAGAUA AGUGCU(GAA AGCAUCUA)A GCACGAAACU UGCCAA|GAG 4441 AUGAGUCAUC C|CU|--gac u(-uua--)a guc---agU- AAGG|-GU|U GUUG-(UAGA 4501 CU-A)CGACG -UAGAUAG|G UUGG|GUGUG -UAAGUGAU- -(GUGA-)-- GUCAU|UG-A 4561 GCUA|A|CCA AUACUAAUU- GCCCGAGAG| GCUUAA-C-- --------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS A.actino.1 4759 bp RNA RNA 11-JAN-191 DEFINITION Actinobacillus actinomycetemcomitans. ACCESSION No information KEYWORDS No information. SOURCE Actinobacillus actinomycetemcomitans. ORGANISM Actinobacillus actinomycetemcomitans. REFERENCE 1 (bases 1 to 2906) AUTHORS Haraszthy,V.I., Sunday,G.J., Bobek,L.A., Motley,T.S., Preus,H JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: S44313 LOCUS S44313 1010 bp DNA BCT 12-NOV-1992 DEFINITION 23S ribosomal RNA [Actinobacillus actinomycetemcomitans, ATCC 43718, FDC Y4, serotype b, Genomic, 1010 nt] ACCESSION S44313 KEYWORDS . SOURCE Actinobacillus actinomycetemcomitans FDC Y4 ATCC 43718 serotype b ORGANISM Actinobacillus actinomycetemcomitans Unclassified. REFERENCE 1 (bases 1 to 1010) AUTHORS Haraszthy,V.I., Sunday,G.J., Bobek,L.A., Motley,T.S., Preus,H. and Zambon,J.J. TITLE Identification and analysis of the gap region in the 23S ribosomal RNA from Actinobacillus actinomycetemcomitans JOURNAL J. Dent. Res. 71, 1561-1568 (1992) STANDARD full automatic COMMENT This entry [NCBI gibbsq 113118] was created by the journal scanning component of NCBI/GenBank at the National Library of Medicine. This sequence comes from Fig. 4. FEATURES Location/Qualifiers rRNA 1..1010 /partial /note="Description: 23S ribosomal RNA" source 1..1010 /organism="Actinobacillus actinomycetemcomitans" BASE COUNT 296 a 201 c 308 g 205 t ORIGIN BASE COUNT 296 a 201 c 308 g 205 t 3749 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ 1201 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 1381 ~~~~~~~~~) ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~)~~ ~~~~~~~AAC 1441 CGGAGAUA-C UGGUUCUCCC CGAAAUCUAU (-UUAG)GUA GAGC|-CUUG agcg---ga| 1501 -cac|cuuug -|GGGUAG|A GC-ACUGU-U UCGGCUA-GG |-GGGCC(au ccc)GGCUUA 1561 GGAACCCGAU -GCAAACUGC GAA-UA-|cc g-a-a-g--a gug----au| -cu-caggAG 1621 ACACAC--GG C-GGGU(GCU AAC)GUCCGU -CGUG-GAGA GGG(-AAACA A-)CCCAGAC 1681 CGCCGGCUCC G-GU|CCCA- AAGUA-CUAA -U-UAA-GUG ------GGAA ACGAACUG-G 1741 GAAGGCUUA- GACAGCUAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAA 1801 AGG(GUAAUA )GC|UCACUA GU-----CGA GU-CGG-CC- -UGC|GCGGA AGAU-AUAA- 1861 CGGGGCUAAA AUUAG-U|C| ACCGAAGCU| GCGG|cauca ggcguau(ca cuaauacgcc 1921 uuacgauuaa caacuugcga aacgaagaga agcaaguugg ucaagcgcca aacacguuga 1981 gacggaaguc augacgggaa gugcgguu-- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ----gggaau ugaggaauau uagug)-aua cgccuguug- GG-UAGGGGA G|-----CGU 2221 U-GUG-UAA- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CGGA-A 2341 GAAGGUG-U- A-UU(-GAGA -)AGU--AUG CUGG|ACGUA U-CACAAGUG CGAAUGC-UG 2401 AC|AUA-AGU A--ACGAUAA AACGGG(UGA AAAA)CCCGU U|CGCC-GGA AGACCAAGGG 2461 UUCCUG-UCC AACG-(UUAA U)CG|agggC AGGGUGAGU| CGG|C-CCCU AAGGCGAGGC 2521 U(GAAA)-A- GCGU-AGUCG AUGG-GAAAC GGG-(UU-AA UAUU)C-CCG U|AC|uu-g- 2581 gu-aaa-gcu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga u------gug g--gga-cgg agcagguua- gguu-a-|gc g-uac(ug-- 2761 uugg-a-uau --)gu-acgu -|uuaa---- ---------- ---guuggua ggug------ 2821 --gggag-cu uagg(ca-aa -u-)cc|g-- gguuccuauu a--------- acacugagag 2881 aug-auga|c ga-|------ -------gcu c(-uacg--) gaguu----- ------gaag 2941 --uaacc-ga uacc-aca-| cuuccaggaa a-agccac-u aagcgaa--- -----agg-c 3001 -uuuac--ua a|A|CCGUAC UGAAAACC(G ACACA)GG|U GG-UCAGGU- A-(GAGAA)U 3061 ACUCAGGCGC ||UUGAGAGA ACUCGGGUG- ---------- ----AAGGAA CUAGGCAAAA 3121 U~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(-~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~-- --~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~---~~~)~ 3301 ~~~~~~~-~~ ~~~~~~~~~- ~~~~~~~~~~ ~~|~~~~-~~ ~-~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~-- (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |-~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~-~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ 3721 ~~~~~~|~~~ ~-~~~~~~~~ ~~~-~~~~~~ -~~~~~~~~~ ~~~~~(~~~~ -~~~)-~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~-~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~---~)-~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~-(~~~~ 4501 ~~-~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS A.actino.2 4759 bp RNA RNA 11-JAN-191 DEFINITION Actinobacillus actinomycetemcomitans. ACCESSION No information KEYWORDS No information. SOURCE Actinobacillus actinomycetemcomitans. ORGANISM Actinobacillus actinomycetemcomitans. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: S44631 LOCUS S44631 112 bp rRNA BCT 12-NOV-1992 DEFINITION 23S ribosomal RNA {gap region} [Actinobacillus actinomycetemcomitans, ATCC 43717, SUNYAB 75, serotype a, rRNA Partial, 112 nt] ACCESSION S44631 KEYWORDS . SOURCE Actinobacillus actinomycetemcomitans SUNYAB 75 ATCC 43717 serotype a ORGANISM Actinobacillus actinomycetemcomitans Unclassified. REFERENCE 1 (bases 1 to 112) AUTHORS Haraszthy,V.I., Sunday,G.J., Bobek,L.A., Motley,T.S., Preus,H. and Zambon,J.J. TITLE Identification and analysis of the gap region in the 23S ribosomal RNA from Actinobacillus actinomycetemcomitans JOURNAL J. Dent. Res. 71, 1561-1568 (1992) STANDARD full automatic COMMENT This entry [NCBI gibbsq 113123] was created by the journal scanning component of NCBI/GenBank at the National Library of Medicine. This sequence comes from Fig. 7. FEATURES Location/Qualifiers rRNA 1..112 /partial /note="Description: 23S ribosomal RNA" source 1..112 /organism="Actinobacillus actinomycetemcomitans" BASE COUNT 41 a 18 c 33 g 20 t ORIGIN BASE COUNT 41 a 18 c 33 g 20 t 4647 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ 1201 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 1381 ~~~~~~~~~) ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~c 1921 uuacgauu-a caacuugcga aacgaagaga agcaaguagg ucaagcgcca aacacguuca 1981 gacggaaguc augacgggaa gugcgguu-- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ----gggaau agaggaauau uagug)aaa~ ~~~~~~~~~~ ~~~~~~~~~~ ~|-----~~~ 2221 ~-~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~- ~-~~(~~~~~ -)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 2401 ~~|~~~-~~~ ~-~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~(~~-~~ ~~~~)~-~~~ ~|~~|~~~~- 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~------~~~ ~--~~~-~~~ ~~~~~~~~~- ~~~~-~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~---- ---------- -~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~-----~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 --~~~~~~~~ ~~~~-~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~-~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(-~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~-- --~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~---~~~)~ 3301 ~~~~~~~-~~ ~~~~~~~~~- ~~~~~~~~~~ ~~|~~~~-~~ ~-~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~-- (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |-~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~-~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ 3721 ~~~~~~|~~~ ~-~~~~~~~~ ~~~-~~~~~~ -~~~~~~~~~ ~~~~~(~~~~ -~~~)-~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~-~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~---~)-~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~-(~~~~ 4501 ~~-~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS A.actino.3 4759 bp RNA RNA 11-JAN-191 DEFINITION Actinobacillus actinomycetemcomitans. ACCESSION No information KEYWORDS No information. SOURCE Actinobacillus actinomycetemcomitans. ORGANISM Actinobacillus actinomycetemcomitans. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: S44319 LOCUS S44319 114 bp rRNA BCT 12-NOV-1992 DEFINITION 23S ribosomal RNA {gap region} [Actinobacillus actinomycetemcomitans, ATCC 29522, serotype b, rRNA Partial, 114 nt] ACCESSION S44319 KEYWORDS . SOURCE Actinobacillus actinomycetemcomitans ATCC 29522 serotype b ORGANISM Actinobacillus actinomycetemcomitans Unclassified. REFERENCE 1 (bases 1 to 114) AUTHORS Haraszthy,V.I., Sunday,G.J., Bobek,L.A., Motley,T.S., Preus,H. and Zambon,J.J. TITLE Identification and analysis of the gap region in the 23S ribosomal RNA from Actinobacillus actinomycetemcomitans JOURNAL J. Dent. Res. 71, 1561-1568 (1992) STANDARD full automatic COMMENT This entry [NCBI gibbsq 113122] was created by the journal scanning component of NCBI/GenBank at the National Library of Medicine. This sequence comes from Fig. 7. FEATURES Location/Qualifiers rRNA 1..114 /partial /note="Description: 23S ribosomal RNA" source 1..114 /organism="Actinobacillus actinomycetemcomitans" BASE COUNT 39 a 21 c 32 g 19 t 3 others ORIGIN BASE COUNT 39 a 21 c 32 g 19 t 4648 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ 1201 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 1381 ~~~~~~~~~) ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~a cuaanacgcc 1921 uuacgauu-a caacuugcgn aacgaagaga agcaaguagg ucnagcgcca aacacguuga 1981 gacggaaguc augaccggaa gugcgguu-- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ----gggaau ugaggaaaau ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|-----~~~ 2221 ~-~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~- ~-~~(~~~~~ -)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 2401 ~~|~~~-~~~ ~-~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~(~~-~~ ~~~~)~-~~~ ~|~~|~~~~- 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~------~~~ ~--~~~-~~~ ~~~~~~~~~- ~~~~-~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~---- ---------- -~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~-----~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 --~~~~~~~~ ~~~~-~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~-~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(-~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~-- --~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~---~~~)~ 3301 ~~~~~~~-~~ ~~~~~~~~~- ~~~~~~~~~~ ~~|~~~~-~~ ~-~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~-- (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |-~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~-~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ 3721 ~~~~~~|~~~ ~-~~~~~~~~ ~~~-~~~~~~ -~~~~~~~~~ ~~~~~(~~~~ -~~~)-~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~-~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~---~)-~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~-(~~~~ 4501 ~~-~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS A.actino.4 4759 bp RNA RNA 11-JAN-191 DEFINITION Actinobacillus actinomycetemcomitans. ACCESSION No information KEYWORDS No information. SOURCE Actinobacillus actinomycetemcomitans. ORGANISM Actinobacillus actinomycetemcomitans. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: S44637 LOCUS S44637 61 bp rRNA BCT 12-NOV-1992 DEFINITION 23S ribosomal RNA {gap region} [Actinobacillus actinomycetemcomitans, SUNYaB 10DIT-d, serotype b, rRNA Partial, 61 nt] ACCESSION S44637 KEYWORDS . SOURCE Actinobacillus actinomycetemcomitans serotype b SUNYaB 10DIT-d ORGANISM Actinobacillus actinomycetemcomitans Unclassified. REFERENCE 1 (bases 1 to 61) AUTHORS Haraszthy,V.I., Sunday,G.J., Bobek,L.A., Motley,T.S., Preus,H. and Zambon,J.J. TITLE Identification and analysis of the gap region in the 23S ribosomal RNA from Actinobacillus actinomycetemcomitans JOURNAL J. Dent. Res. 71, 1561-1568 (1992) STANDARD full automatic COMMENT This entry [NCBI gibbsq 113131] was created by the journal scanning component of NCBI/GenBank at the National Library of Medicine. This sequence comes from Fig. 7. FEATURES Location/Qualifiers rRNA 1..61 /partial /note="Description: 23S ribosomal RNA" source 1..61 /organism="Actinobacillus actinomycetemcomitans" BASE COUNT 22 a 11 c 21 g 6 t 1 others ORIGIN BASE COUNT 22 a 11 c 21 g 6 t 4699 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ 1201 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 1381 ~~~~~~~~~) ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~ga aacgaagaga agcaaguugg ucnagcgcca aacacguuga 1981 gacggaaggc augacggga~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|-----~~~ 2221 ~-~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~- ~-~~(~~~~~ -)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 2401 ~~|~~~-~~~ ~-~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~(~~-~~ ~~~~)~-~~~ ~|~~|~~~~- 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~------~~~ ~--~~~-~~~ ~~~~~~~~~- ~~~~-~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~---- ---------- -~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~-----~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 --~~~~~~~~ ~~~~-~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~-~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(-~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~-- --~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~---~~~)~ 3301 ~~~~~~~-~~ ~~~~~~~~~- ~~~~~~~~~~ ~~|~~~~-~~ ~-~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~-- (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |-~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~-~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ 3721 ~~~~~~|~~~ ~-~~~~~~~~ ~~~-~~~~~~ -~~~~~~~~~ ~~~~~(~~~~ -~~~)-~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~-~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~---~)-~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~-(~~~~ 4501 ~~-~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS A.actino.5 4759 bp RNA RNA 11-JAN-191 DEFINITION Actinobacillus actinomycetemcomitans. ACCESSION No information KEYWORDS No information. SOURCE Actinobacillus actinomycetemcomitans. ORGANISM Actinobacillus actinomycetemcomitans. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: S44636 LOCUS S44636 115 bp rRNA BCT 12-NOV-1992 DEFINITION 23S ribosomal RNA {gap region} [Actinobacillus actinomycetemcomitans, SUNYaB MIM-AA-1d, serotype b, rRNA Partial, 115 nt] ACCESSION S44636 KEYWORDS . SOURCE Actinobacillus actinomycetemcomitans serotype b SUNYaB MIM-AA-1d ORGANISM Actinobacillus actinomycetemcomitans Unclassified. REFERENCE 1 (bases 1 to 115) AUTHORS Haraszthy,V.I., Sunday,G.J., Bobek,L.A., Motley,T.S., Preus,H. and Zambon,J.J. TITLE Identification and analysis of the gap region in the 23S ribosomal RNA from Actinobacillus actinomycetemcomitans JOURNAL J. Dent. Res. 71, 1561-1568 (1992) STANDARD full automatic COMMENT This entry [NCBI gibbsq 113130] was created by the journal scanning component of NCBI/GenBank at the National Library of Medicine. This sequence comes from Fig. 7. FEATURES Location/Qualifiers rRNA 1..115 /partial /note="Description: 23S ribosomal RNA" source 1..115 /organism="Actinobacillus actinomycetemcomitans" BASE COUNT 31 a 15 c 22 g 19 t 28 others ORIGIN BASE COUNT 31 a 15 c 22 g 19 t 4672 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ 1201 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 1381 ~~~~~~~~~) ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~cgcc 1921 uuacgauu-a caacuugcga aacgaagaga agcaaguagg ucaagcgcca aacacguunn 1981 nnnnnnnnnn nnnnnnnnnn nnnnnnuu-- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ----gggaau ugaggaauau uagug)aua~ ~~~~~~~~~~ ~~~~~~~~~~ ~|-----~~~ 2221 ~-~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~- ~-~~(~~~~~ -)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 2401 ~~|~~~-~~~ ~-~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~(~~-~~ ~~~~)~-~~~ ~|~~|~~~~- 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~------~~~ ~--~~~-~~~ ~~~~~~~~~- ~~~~-~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~---- ---------- -~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~-----~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 --~~~~~~~~ ~~~~-~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~-~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(-~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~-- --~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~---~~~)~ 3301 ~~~~~~~-~~ ~~~~~~~~~- ~~~~~~~~~~ ~~|~~~~-~~ ~-~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~-- (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |-~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~-~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ 3721 ~~~~~~|~~~ ~-~~~~~~~~ ~~~-~~~~~~ -~~~~~~~~~ ~~~~~(~~~~ -~~~)-~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~-~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~---~)-~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~-(~~~~ 4501 ~~-~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS A.actino.6 4759 bp RNA RNA 11-JAN-191 DEFINITION Actinobacillus actinomycetemcomitans. ACCESSION No information KEYWORDS No information. SOURCE Actinobacillus actinomycetemcomitans. ORGANISM Actinobacillus actinomycetemcomitans. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: S44633 LOCUS S44633 118 bp rRNA BCT 12-NOV-1992 DEFINITION 23S ribosomal RNA {gap region} [Actinobacillus actinomycetemcomitans, ATCC 33384T, NCTC 9710, serotype c, rRNA Partial, 118 nt] ACCESSION S44633 KEYWORDS . SOURCE Actinobacillus actinomycetemcomitans NCTC 9710 serotype c ATCC 33384T ORGANISM Actinobacillus actinomycetemcomitans Unclassified. REFERENCE 1 (bases 1 to 118) AUTHORS Haraszthy,V.I., Sunday,G.J., Bobek,L.A., Motley,T.S., Preus,H. and Zambon,J.J. TITLE Identification and analysis of the gap region in the 23S ribosomal RNA from Actinobacillus actinomycetemcomitans JOURNAL J. Dent. Res. 71, 1561-1568 (1992) STANDARD full automatic COMMENT This entry [NCBI gibbsq 113127] was created by the journal scanning component of NCBI/GenBank at the National Library of Medicine. This sequence comes from Fig. 7. FEATURES Location/Qualifiers rRNA 1..118 /partial /note="Description: 23S ribosomal RNA" source 1..118 /organism="Actinobacillus actinomycetemcomitans" BASE COUNT 40 a 21 c 34 g 22 t 1 others ORIGIN BASE COUNT 40 a 21 c 34 g 22 t 4642 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ 1201 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 1381 ~~~~~~~~~) ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(ca cuaauacgcc 1921 uuacgaun-a caacuugcga aacgaagaga agcaaguagg ucaagcgcca aacacguuga 1981 gacggaagug augacgggcu gugcgguu-- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ----gagaau ugaggaauau uag~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|-----~~~ 2221 ~-~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~- ~-~~(~~~~~ -)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 2401 ~~|~~~-~~~ ~-~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~(~~-~~ ~~~~)~-~~~ ~|~~|~~~~- 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~------~~~ ~--~~~-~~~ ~~~~~~~~~- ~~~~-~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~---- ---------- -~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~-----~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 --~~~~~~~~ ~~~~-~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~-~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(-~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~-- --~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~---~~~)~ 3301 ~~~~~~~-~~ ~~~~~~~~~- ~~~~~~~~~~ ~~|~~~~-~~ ~-~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~-- (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |-~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~-~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ 3721 ~~~~~~|~~~ ~-~~~~~~~~ ~~~-~~~~~~ -~~~~~~~~~ ~~~~~(~~~~ -~~~)-~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~-~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~---~)-~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~-(~~~~ 4501 ~~-~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS A.actino.7 4759 bp RNA RNA 11-JAN-191 DEFINITION Actinobacillus actinomycetemcomitans. ACCESSION No information KEYWORDS No information. SOURCE Actinobacillus actinomycetemcomitans. ORGANISM Actinobacillus actinomycetemcomitans. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: S44635 LOCUS S44635 77 bp rRNA BCT 12-NOV-1992 DEFINITION 23S ribosomal RNA {gap region} [Actinobacillus actinomycetemcomitans, SUNYAB 364, serotype c, rRNA Partial, 77 nt] ACCESSION S44635 KEYWORDS . SOURCE Actinobacillus actinomycetemcomitans SUNYAB 364 serotype c ORGANISM Actinobacillus actinomycetemcomitans Unclassified. REFERENCE 1 (bases 1 to 77) AUTHORS Haraszthy,V.I., Sunday,G.J., Bobek,L.A., Motley,T.S., Preus,H. and Zambon,J.J. TITLE Identification and analysis of the gap region in the 23S ribosomal RNA from Actinobacillus actinomycetemcomitans JOURNAL J. Dent. Res. 71, 1561-1568 (1992) STANDARD full automatic COMMENT This entry [NCBI gibbsq 113129] was created by the journal scanning component of NCBI/GenBank at the National Library of Medicine. This sequence comes from Fig. 7. FEATURES Location/Qualifiers rRNA 1..77 /partial /note="Description: 23S ribosomal RNA" source 1..77 /organism="Actinobacillus actinomycetemcomitans" BASE COUNT 24 a 15 c 22 g 10 t 6 others ORIGIN BASE COUNT 24 a 15 c 22 g 10 t 4688 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ 1201 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 1381 ~~~~~~~~~) ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ caacuugcga aacgaagaga agcaaguann nnnngcgcca aacacguuga 1981 gacggaucuc augacgggaa gugcggu~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|-----~~~ 2221 ~-~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~- ~-~~(~~~~~ -)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 2401 ~~|~~~-~~~ ~-~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~(~~-~~ ~~~~)~-~~~ ~|~~|~~~~- 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~------~~~ ~--~~~-~~~ ~~~~~~~~~- ~~~~-~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~---- ---------- -~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~-----~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 --~~~~~~~~ ~~~~-~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~-~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(-~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~-- --~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~---~~~)~ 3301 ~~~~~~~-~~ ~~~~~~~~~- ~~~~~~~~~~ ~~|~~~~-~~ ~-~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~-- (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |-~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~-~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ 3721 ~~~~~~|~~~ ~-~~~~~~~~ ~~~-~~~~~~ -~~~~~~~~~ ~~~~~(~~~~ -~~~)-~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~-~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~---~)-~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~-(~~~~ 4501 ~~-~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS A.actino.8 4759 bp RNA RNA 11-JAN-191 DEFINITION Actinobacillus actinomycetemcomitans. ACCESSION No information KEYWORDS No information. SOURCE Actinobacillus actinomycetemcomitans. ORGANISM Actinobacillus actinomycetemcomitans. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: S44634 LOCUS S44634 94 bp rRNA BCT 12-NOV-1992 DEFINITION 23S ribosomal RNA {gap region} [Actinobacillus actinomycetemcomitans, SUNYAB 114, serotype c, rRNA Partial, 94 nt] ACCESSION S44634 KEYWORDS . SOURCE Actinobacillus actinomycetemcomitans SUNYAB 114 serotype c ORGANISM Actinobacillus actinomycetemcomitans Unclassified. REFERENCE 1 (bases 1 to 94) AUTHORS Haraszthy,V.I., Sunday,G.J., Bobek,L.A., Motley,T.S., Preus,H. and Zambon,J.J. TITLE Identification and analysis of the gap region in the 23S ribosomal RNA from Actinobacillus actinomycetemcomitans JOURNAL J. Dent. Res. 71, 1561-1568 (1992) STANDARD full automatic COMMENT This entry [NCBI gibbsq 113128] was created by the journal scanning component of NCBI/GenBank at the National Library of Medicine. This sequence comes from Fig. 7. FEATURES Location/Qualifiers rRNA 1..94 /partial /note="Description: 23S ribosomal RNA" source 1..94 /organism="Actinobacillus actinomycetemcomitans" BASE COUNT 32 a 17 c 25 g 16 t 4 others ORIGIN BASE COUNT 32 a 17 c 25 g 16 t 4669 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ 1201 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 1381 ~~~~~~~~~) ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~c 1921 uuacgauu-a caacuugcga aacgaagaga agcaaguann nnaagcgcca aacacguuga 1981 cacggauguc augacgggaa gugcaguu-- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ----gggaau ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|-----~~~ 2221 ~-~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~- ~-~~(~~~~~ -)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 2401 ~~|~~~-~~~ ~-~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~(~~-~~ ~~~~)~-~~~ ~|~~|~~~~- 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~------~~~ ~--~~~-~~~ ~~~~~~~~~- ~~~~-~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~---- ---------- -~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~-----~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 --~~~~~~~~ ~~~~-~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~-~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(-~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~-- --~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~---~~~)~ 3301 ~~~~~~~-~~ ~~~~~~~~~- ~~~~~~~~~~ ~~|~~~~-~~ ~-~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~-- (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |-~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~-~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ 3721 ~~~~~~|~~~ ~-~~~~~~~~ ~~~-~~~~~~ -~~~~~~~~~ ~~~~~(~~~~ -~~~)-~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~-~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~---~)-~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~-(~~~~ 4501 ~~-~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS A.actino.9 4759 bp RNA RNA 11-JAN-191 DEFINITION Actinobacillus actinomycetemcomitans. ACCESSION No information KEYWORDS No information. SOURCE Actinobacillus actinomycetemcomitans. ORGANISM Actinobacillus actinomycetemcomitans. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: S44632 LOCUS S44632 103 bp rRNA BCT 12-NOV-1992 DEFINITION 23S ribosomal RNA {gap region} [Actinobacillus actinomycetemcomitans, ATCC 43719, SUNYAB 67, serotype c, rRNA Partial, 103 nt] ACCESSION S44632 KEYWORDS . SOURCE Actinobacillus actinomycetemcomitans SUNYAB 67 ATCC 43719 serotype c ORGANISM Actinobacillus actinomycetemcomitans Unclassified. REFERENCE 1 (bases 1 to 103) AUTHORS Haraszthy,V.I., Sunday,G.J., Bobek,L.A., Motley,T.S., Preus,H. and Zambon,J.J. TITLE Identification and analysis of the gap region in the 23S ribosomal RNA from Actinobacillus actinomycetemcomitans JOURNAL J. Dent. Res. 71, 1561-1568 (1992) STANDARD full automatic COMMENT This entry [NCBI gibbsq 113126] was created by the journal scanning component of NCBI/GenBank at the National Library of Medicine. This sequence comes from Fig. 7. FEATURES Location/Qualifiers rRNA 1..103 /partial /note="Description: 23S ribosomal RNA" source 1..103 /organism="Actinobacillus actinomycetemcomitans" BASE COUNT 32 a 20 c 27 g 19 t 5 others ORIGIN BASE COUNT 32 a 20 c 27 g 19 t 4661 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ 1201 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 1381 ~~~~~~~~~) ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~unnnacncc 1921 uuacgauu-a caacuugcga aacgaagaga agcaaguagg ucaagcgcca aacacguuga 1981 gacggaaguc nugacgggaa gugccuuu-- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ----gggaau u~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|-----~~~ 2221 ~-~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~- ~-~~(~~~~~ -)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 2401 ~~|~~~-~~~ ~-~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~(~~-~~ ~~~~)~-~~~ ~|~~|~~~~- 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~------~~~ ~--~~~-~~~ ~~~~~~~~~- ~~~~-~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~---- ---------- -~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~-----~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 --~~~~~~~~ ~~~~-~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~-~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(-~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~-- --~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~---~~~)~ 3301 ~~~~~~~-~~ ~~~~~~~~~- ~~~~~~~~~~ ~~|~~~~-~~ ~-~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~-- (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |-~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~-~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ 3721 ~~~~~~|~~~ ~-~~~~~~~~ ~~~-~~~~~~ -~~~~~~~~~ ~~~~~(~~~~ -~~~)-~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~-~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~---~)-~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~-)~~~~~~~ ~~~~~~~~~~ 4381 ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~-(~~~~ 4501 ~~-~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS PURPLE.DEL 4759 bp RNA RNA 17-JAN-1993 DEFINITION PROTEOBACTERIA - DELTA SUBDIVISION. ACCESSION No information KEYWORDS No information. SOURCE PROTEOBACTERIA - DELTA SUBDIVISION. ORGANISM PROTEOBACTERIA - DELTA SUBDIVISION. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 4759 others ORIGIN 1 -x~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~-)~|- ~~~~~~~~~~ 181 ~~~~~~|-~~ ~~~(~-~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~--- ---------- ---------- 301 -----~~~~~ ~~~~~~~~~~ ~~~~~~---- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- -----~-~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~| ~~~-~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- 721 ---~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~)~~~~~-~ 781 ~|(~~~)~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~- ~~)~~~~~~~ 901 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ 961 ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~-~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)|~~~~ -|~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~-~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~-~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 -~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~-|~~- ~~~~~~~~~~ 1501 |-~~-~~~~~ ~~~~~~~~~| ~~~~~~~~-~ ~~~~~~~~~~ ~-|~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~-~~~~ |~~~~~~~~~ 1621 ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~-~~~~ ~~-~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~-~ --~~-|~~~~ ~~~~~-~~~~ 1861 ~~~~~~~~~~ ~~~~~-~~|~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~-----|~~ 2221 ~~-~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 -~~~~~~~~~ -~-~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~-~ 2401 ~~~|~~~~-~ ~-~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~-~~ ~~~~~~-~~~ ~~~~|~~~~- 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~------~~~ ~~--~~-~~~ ~~~~~~~~~- ~~~~-~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ---------- --~~~~~~~~ ~~~~~~~~-- 2821 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~----~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 --~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~-~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~- ---~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~---~~~~~ 3301 ~~~~~~~~-~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~-~~ ~-~~-~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~( ~~~)~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ 3721 ~~~~~~|~~~ ~~~-~~~~~~ ~~~~~-~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~-~~-~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~|~|~|~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~---~ ~~~~~~-~~~ 3901 ~|~~(~|~~~ ~~)~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~-~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~~~|~~~~ ~~~~~~~~~| 4021 ~~~~~~~~~~ ~~~~~|~~~~ |~~~~~~-~| ~~~~~--~~~ ~~~~~~~~~( ~~~~~~~~~) 4081 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~|~~~~|~~~ ~~~~~~~~~| ~~~~~(~~~~ 4141 ~~~~--)-~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ -~~~~~|~~~ ~~~~~~|~~~ 4261 ~~~~~~~~~- |~~|~~~~~- ~~~~~~---- ---------- ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4381 ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| 4441 ~~~~~~~~~~ ~~~~|~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~|~~~~~-~~ 4501 ~~~~~-~~~~ ~~~~~~~~~~ ~|~~~~~|~~ ~~~~-~~~~~ ~~~~~~~~~~ --~~~~~~|~ 4561 ~~~~|~~-~| ~~~~~~~~~~ ~~~~~~~--~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~||||| // LOCUS N.exedens 4759 bp RNA RNA 03-JUL-1997 DEFINITION Nannocystis exedens.; 23S ribosomal RNA; 23S rRNA gene. ACCESSION X87286 KEYWORDS 23S ribosomal RNA; 23S rRNA gene. SOURCE Nannocystis exedens. ORGANISM Nannocystis exedens. REFERENCE 1 (bases 1 to 2955) AUTHORS ., Reetz,K., Beimfohr,C., Brockmann,E., Kirchhof,G., Dorn,S., Bachleitner,M., Klugbauer,N., Springer,N., Lane,D., Nietupsky ,R., Weizenegger,M. and Schleifer,K.H. Ludwig,W., Rossello-Mora,R., Aznar,R., Klugbauer,S., Spring,S TITLE proteobacteria Comparative sequence analysis of 23S rRNA from JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2955) AUTHORS Ludwig,W. TITLE Direct Submission JOURNAL Submitted (18-MAY-1995) W. Ludwig, Lehrstuhl fuer Mikrobiologie, Technische Universitaet Muenchen, Muenchen, FRG STANDARD No information REFERENCE 3 (bases 1 to 2955) AUTHORS Ludwig,W., Rossello-Mora,R., Aznar,R., Klugbauer,S., Spring,S., Reetz,K., Beimfohr,C., Brockmann,E., Kirchhof,G. , Dorn,S., Bachleitner,M., Klugbauer,N., Springer,N., Lane, D., Nietupsky,R., Weizenegger,M. and Schleifer,K.H. TITLE Comparative sequence analysis of 23S rRNA from proteobacteria JOURNAL Syst. Appl. Microbiol. 18, 164-188 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X87286 BASE COUNT 762 a 690 c 958 g 545 t 1804 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- -gccgcaAGG UUAAGGUAG- --AAAGAGCA CACGGUGGAU 121 G|CCUUGG|C ACCAAG|AG| GC-GACGAAG GA|CGCG(GC UA-CC-)U|- GCG-AAAAGC 181 UACGGG|-GA ACU(G-GA-A GCG-)AGUGU C-GAUC-CGU AGAUG|UCCG AAUGGG(GAA 241 A)CCC|ggca ggcg(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----ucau)g gccuguc-au cc-ucugcu( 481 ga-auaca-- ua)ggc-aga cg-g--aaG- C-GAAC|GG- AGGGAACU|G A(AACA)UCU 541 AAGUA-CCUC CAGGAGAAGA AAUC(-aauu --)GAGAC|U CC-GCUAGUA GU(GGCGA)G 601 CGA-AUG-CG GA-UUA-GCC CAAAccugc- -agg------ -----(uuu- -)-------- 661 ---ccu-gca gggguugugg gggcccgaca ugg------- ---------- ---------- 721 ---------- -----gaccg uaag-agcua gcaGAAc-gg c-c(u-ggga a)g-gccggc 781 |c(aua)gac GG(UGAUAGC )CCGGU-Aug cgaaaguu-c gag-cggccc ---------- 841 ---------- ---uagggag ucccc---GA GUAAGGCGGG A(CACGAG-A AA)CCCUGUC 901 UGAAGCU-GG G-AG(GACCA U)CU-UCC-A AGGCUAA--- -GUACUCCUU GGUGACCGAU 961 AGCG-UAC-G AGUACC(GUG A)-GGGA-AA GGUGAAAA-G AACCCC(UGC GA-)GGGGA- 1021 -GUGAAA--A GAAUCUGAAA CCGU-GUGUU UACAA-G-CA GUCGGAGagc -uauggcc-- 1081 --------(- ---gcaa--) ---------- -ggcaaagcu CGACGGCGUA CCU(UUU-GC 1141 AU|C)AUGA| -gccaacgag uugu-gguc- agcggc-AAG GUUAAGCC-( --gaua)-GG 1201 C-GAAGCCGA AGC(GAAA-) GCAAGUCU(G AG-AA)GGGC Gu-------- ---------- 1261 ---------- -----cu-aa g-UCGCUGGU UACA-GACCC GAAAC-UUU- GUGA-UCUAU 1321 CCAUGAG|CA GGCUGAAGCG CGGG(UAAG) AC-UGCGUGG AGGGCCGAAC U-CACCACA( 1381 -GUUGAAAA) UGUGG|GGG- AUGAC-UUGU GGAUAGGAGU (-GAAAG)GC UAAUCAAACU 1441 GGGAGAUAGC UGGUUCUCGC CGAAACAUAU (-UGAG)GUA UGGG|-GUCA GUCGA---u| 1501 -uug|CAUCG G|GGGUAG|A GC-ACUGG-A UGGGCUA-GG |-GGGAC(ca ca-)AUCUUA 1561 CCGAACCCAA -CCAAACUCC GAA-UA-|CC G-A-U-G--a caa----CA| GGC-UGGCAC 1621 UCAGGC--AG U-GAGA(GCU AAG)UUUCAU -UGCC-GAGA GGG(-AAAGA A-)CCCAGAC 1681 CGGCAGCUAA G-GU|CCCC- AAUUC-AUCA -C-UAA-GUG ------guAA AGGAUGUG-G 1741 GAGCACUCA- GACAGCCAGG AGGUUGGC(U UAGAAGCA)G CCAU-CCU|U (UAA)A|GAA 1801 AGC(GUAAcA )GC|UCACUG GU-----CGA GU-GAA-CC- -UGC|GCCGA AAAU-UCAA- 1861 CGGGUCU-AA GUGAU-G|A| ACCGAAGCU| CCGG|gucug cc-----(ga aa-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --ggcaggc- GG-UAGGCGA G|-----UAU 2221 U-GUC-UG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --C-GCGG-U 2341 GAAUGCG-U- A-CG(-GAAA -)CGA--GCG UUGG|AGUGC A-GACAAGAG CUGAUGU-UG 2401 GC|AUG-AGU A--GCGAUAA ACCGGG(UGA AAAA)CCCGG U|CGCC-GUA AACCCGAGGG 2461 UUCCUG-GGU AAAG-(AUCA U)CU|U-CUC AGGGUUAGU| CGG|U-CCCU AAGGCGAGGC 2521 A(gAAA)-U- GCGU-AGUCG AUGG-GAAGC AGG-(CG-AA CAUU)C-CUG C|AC|ca-g- 2581 ca-cgg--au g-guu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -----uugua a------ggu g--gga-cgg aggaggaua- gccg-a-|gc g-acc(ug-- 2761 uugg-a-u-- --)gg-ucgu -|ucaa---- ---------- ---gccg-gu aggcg----- 2821 guucgcguag gagg-ca-uc ugg)cc|a-- caaacgcgcg agcaacg--- --cc-gagag 2881 gug-auga|g g--|------ ------gucg c(-gcaag-) gcggac---- --------aa 2941 -cucggu-ga gucc-aag-| cuuccaagaa a-agcaucgu a-caa----- -gugu-ac-c 3001 gcugug--cu g|A|CCGUAC CGUAAACC(G ACACA)GG|U GG-GUGGGG- A-(GAACA)U 3061 CCCAAGGCGC ||UUGAGAGA ACUCGGGUU- ---------- ----AAGGAA CUCGGCAAAU 3121 UGACACCGUA AC(-UUCG)G GAGAAGGUGU |GCccuug-a gggu------ ----gacggg 3181 c(-cucgc)g ccaug----- -----agccu uuggggg-u| U(GCA)GAGA AUCGGGG-GU 3241 AG|CGACU-- ---GU(UUAC CAAAA)ACAC AGGACUCUG| CGAAGUC(GC AA------)G 3301 ACGACGU-AU AGGGUCUGA- CGCCUGCCCG GU|GCCG-GA A-GGUUAACA GGAGauguca 3361 gc-------- (G-CAA)--- --------gc ga-agcaucg aaucgAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GGCGGG(U 3481 AAGU)UCCGU C|CUGCACGA AUGGCGUAAC GA-CUUCCCC ACUGUCUCGA CCCGGGACUC 3541 A|GCGAAAUU |GAAAUCG-G GG(UGAAGAU G)CCCCGUAC CCGCGGC-AA GACGGAAAGA 3601 CCCCGUGA|A CCU-UUACUG C|AGCUUGGC ACU|GGUUUU CGGACUUGUC UGUGUAGGAU 3661 AGGUGGGAGG CUAUGAUG-- UGGGGCC(GC UA)GGUUCCA CGGAGCCAAC -G-UUGAAAU 3721 ACCACC|CUG A-GAAGUCUG AAA-GCCUAA -CCGUGA--- -CCAG(--UG -AGC)-CUGG 3781 UCCGG-GACA CUGCCUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|ACCUC C(GAA-AGAG 3841 UAAC)GGAGG C|G|C|GCAA AGGUUCCC|U CAGGCUGA(U UGGAAA)CCA GCCGAA-GA| 3901 GU(G|UAAAG )GCAUAAGGG AGCUUGACUG CGACUC(AUA CAA)GAGGAG CAGGCAC(GA 3961 AA)GU-GGGC |CUUAGUGAU CCGGUGGUUC UG(AAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UUA--UCACG CCCAAGA(G- UUC-ACA)UC 4081 GACGGCG-UG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GUAG 4141 U---A)-GGU CCCAAGGGU| UUGGC(UGUU C)GC-CAAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-AAAC |GUC(GUGA) -GACAGUU-U GGU-CCCUAU -CU|GCCGUG G-G|CG-CAG 4261 GAAUCUU|GA a|GUGGAGC- UGU------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACA GACCCCUGGU GUUCCGGU|U GUUUU(GC-C A-)AGAGCA- UCGCCGGGUA 4381 GCC-AUGUCU GGAACGGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAGCC AACCAC|AAG 4441 AUGAGGAUUC C|CU|----- -(------)- --------G- AAGG|-UC|C GUCG-(UAGA 4501 CG-A)CGACG -UUAAUAG|G CCGG|GUGUG -GAAGCGCG- -(GCGA-)-- CGCGU|AU-A 4561 GCUA|A|CCG GUACUAAUC- GACCGUUCG| GCUUGA-CCU uggccacc|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS S.aurantia 4759 bp RNA RNA 03-JUL-1997 DEFINITION Stigmatella aurantiaca.; 23S ribosomal RNA; 23S rRNA gene. ACCESSION X87291 KEYWORDS 23S ribosomal RNA; 23S rRNA gene. SOURCE Stigmatella aurantiaca. ORGANISM Stigmatella aurantiaca. REFERENCE 1 (bases 1 to 2975) AUTHORS Ludwig,W., Rossello-Mora,R., Aznar,R., Klugbauer,S., Spring,S ., Reetz,K., Beimfohr,C., Brockmann,E., Kirchhof,G., Dorn,S., Bachleitner,M., Klugbauer,N., Springer,N., Lane,D., Nietupsky ,R., Weizenegger,M. and Schleifer,K.H. TITLE Comparative sequence analysis of 23S rRNA from proteobacteria JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2975) AUTHORS Ludwig,W. TITLE Direct Submission JOURNAL Submitted (18-MAY-1995) W. Ludwig, Lehrstuhl fuer Mikrobiologie, Technische Universitaet Muenchen, Muenchen, FRG STANDARD No information REFERENCE 3 (bases 1 to 2975) AUTHORS Ludwig,W., Rossello-Mora,R., Aznar,R., Klugbauer,S., Spring,S., Reetz,K., Beimfohr,C., Brockmann,E., Kirchhof,G. , Dorn,S., Bachleitner,M., Klugbauer,N., Springer,N., Lane, D., Nietupsky,R., Weizenegger,M. and Schleifer,K.H. TITLE Comparative sequence analysis of 23S rRNA from proteobacteria JOURNAL Syst. Appl. Microbiol. 18, 164-188 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X87291 BASE COUNT 768 a 694 c 947 g 566 t 1784 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------AA GUAAGCUAC- --UAAGGGCG UGUGGUGGAU 121 G|CCUAGG|U GCCAAG|AG| GC-GAUGAAG GA|CGUG(GG UG-GC-)U|- GCG-AAAAGC 181 UCCGGG|-GA GUU(G-CC-A ACCg)AACGU U-GAAC-CGG AGAUG|UCCG AAUGGG(GAA 241 A)CCC|agcg cggu(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---gaaua)g cugcguu-ac cc-cggccu( 481 ga-auaca-- ua)ggg-ucg -gag--gaG- C-GAAC|CA- GGGGAAGU|G A(AACA)UCU 541 CAGUA-CCCU GAGGAAAAGA AAAC(-aaug a-)GUGAU|U CC-CGUAGUA GC(GGCGA)G 601 CGA-ACC-GG GA-ACA-GCC UAAAccgagu -ccac----- -----(gcaa -)-------- 661 --gugc-cuc gggguugcgg guccgcggua g--------- ---------- ---------- 721 ---------- -----gacuc uggagagcua gcgGAAg-ca c-u(u-ggaa a)g-gugcac 781 |c(aaa)gag CG(UGAUAGU )CGCGU-Acg cgaaagcuaa cug-gagccg ---------- 841 ---------- ---agcgggg uaccc---aA GUACGGCGGG A(CACGUG-C AA)UCCUGCC 901 CGAAUCU-GC C-GG(GACCA U)CC-GGU-A AGGCUAA--- -AUACUACUU GGCGACCGAU 961 AGUG-AAC-A AGUACC(GCG A)-GGGA-AA GGUGAAAA-G AACCCC(GGU GA-)GGGGA- 1021 -GUCCAA--A GAACCUGAAA CCAC-AUGUC UACAA-G-CA GUUCGAGCgc -aac-gcc-- 1081 --------(- ---gcaa--) ---------- -ggcag-gcG CGAGAGCGUA CCU(UUU-GC 1141 AU|C)AUGA| -UUCGGCGAC UUAA-UGUA- CGUAGC-GAG GCUAAGCC-( --gaug)-GG 1201 U-GGAGCCGG AGC(GAAA-) GCGAGUCC(G AA-AU)GGGC GA-------- ---------- 1261 ---------- ------c-ga g-UUGCGUGU AUUAUAACCC GAAGC-GGG- GUGA-UCUAC 1321 ACAUGGC|CA GGAUGAAGUG CGGG(UAAC) AC-CGCAUGG AGGUCCGAAC U-CAUGAAA( 1381 -GUUGAAAA) UUUCU|GGG- AUGAG-CUGU GUGUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 CCGUGAUAGC UGGUUCUCCC CGAAAGAUAU (-UUAG)GUA UCGU|-CUCA GGucau--u| 1501 -cag|UACCG G|AGGUAG|A GC-ACUGG-A ACGGCUA-GG |-GGUCU(ca cc-)AGAUUA 1561 CCAAACCGUA -CCAAACUCC GAA-UG-|CC G-G-U-A--a cugu---ua| ucc-UGGGAA 1621 GCAGUC--AG U-GGGU(GAU AAC)GUCCAU -UGGC-AAGA GGG(-GAAUA A-)CCCAGAC 1681 CGACAGCUAA G-GC|CCCC- AAAUC-UAGU -C-UAA-GUG accacuaGAA AGGAUGUG-G 1741 CAGGUCAUU- GACAACCAGG AGGUUGGC(U UAGAAGCA)G CCAU-CCU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG GU-----CAA GA-CAG-GC- -CGC|GCCGA AAAU-GUAA- 1861 CGGGGCUcAA GACUA-G|U| GCCGAAGCU| UCGG|gucau acgcgu-(uc ag-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)--ac guguauggc- GG-UAGGGGA G|-----CGU 2221 C-CCA-GU-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-GCGG-C 2341 GAAGGUA-G- A-CC(-GAAA -)GGG--CUG CUGG|AGCGA C-UGGGAGUG CUGAUGC-CG 2401 AA|AUG-AGU A--GCGAUAA AGGGGG(UGA GAAA)CCCCC U|CGCC-GUA AACCCAAGGU 2461 UUCCUG-GGU CAAG-(UUAA U)CU|U-CCC AGGGUUAGC| CGG|A-ACCU AAGCUGAGGC 2521 C(GAAA)-G- GCGU-AGGUG AUGG-AAAGC AGG-(UU-AA UAUU)C-CUG C|GC|ca-u- 2581 cu-ugc-agu c-guu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---gaacuga -------ggg a--gga-cgg agaaggcua- gacg-a-|gc c-ggg(ug-- 2761 gugg-u-ugc --)ac-cggu -|ccaa---- ---------- ---agac-gu agggg----- 2821 --ugucg-cg uacg(aa-ua -a-)ag|g-- cgcggcaguu au-------- cccc-gagau 2881 ccc-augg|c g--|------ -------ccc c(-gcaa--) gggg------ ------uuag 2941 --ucguu-ga ugcc-acg-| cuuccaagaa a-agucccgc aggga----- ------ga-c 3001 uguagg--gu g|U|CCGUAC CGCAAACC(G ACACA)GG|U GG-GUGAGG- A-(GAAAA)U 3061 CCUAAGGCGC ||UUGAGAGA ACUCUCCUCc ---------- ----AAGGAA CUAGGCAAAU 3121 UUCCACCGUA AC(-UUCG)G AAGAAGGUGG |GCcucuggu aggu------ -----guagg 3181 c(-guaca)g ccga------ -----agccg agagagg-u| U(GCA)GAGA AAUGGCG-GU 3241 AG|CGACU-- ---GU(UUAC CAAAA)ACAC AGGACUCUG| CGAAGGC(GA CAa-----)G 3301 CCGACGU-AU AGGGUCUGA- CUCCUGCCCG GU|GCUG-GA A-GGUUAAGG GGAUucguca 3361 gcc------- (G-CAA)--- -------ggc aa-agcgaug auccgAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGAGUAAC GA-CUUCCGC GCUGUCUCGG AGAGGGACUC 3541 A|GCGAAAUU |GAAAUAG-C UG(UGCCGAU G)CAGUUUAC CCGCAGC-AA GACGGAAAGA 3601 CCCCGUGA|A CCU-UUACUA C|AACUUGAC AGU|GACACU AGGGAUUGAC UGUGUAGGAU 3661 AGGUGGGAGC CUUUGAAG-- CCGGGCC(GC UA)GGUUCGG UGGAGGCAAC -G-GUGAAAU 3721 ACCACC|CUG U-UGAUUUCU GGU-GUCUAA -CCAUGU--- -CCCA(--UU -AUC)-UGGG 3781 AUUGG-GACA CUGUCUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|GCCUC C(CAA-AGAG 3841 UAAC)GGAGG C|G|C|GCGA UGGUUCCC|U CAGCCCGA(U UGGAAA)CCG GGCGUC-GA| 3901 GU(G|CAAUG )GCAUAAGGG AGCUUGACUG CGAGAC(AGA CAU)GUCGAG CAGGUGC(GA 3961 AA)GC-AGGU |CAUAGUGAU CCGGUGGUCC UG(AAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGGUA CUC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UUC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GGAG 4141 C---A)-GGU CCCAAGGGU| UUGGC(UGUU C)GC-CAAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-AAAC |GUC(GUGA) -GACAGUU-U GGU-CCCUAU -CU|GCUGUG G-G|CG-UAG 4261 GAUACUU|GA -|GAGGCUC- UGA------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGUUGG|AGA CACCUCUGGU GUACCAGU|U AUCAC(GC-C A-)GUGGUA- UCGCUGGGUA 4381 GCC-AAGUGU CGAUUGGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAACC GACCUC|AAG 4441 ACCAGGUAUC C|CG|ggc-- -(-gcaa-)- --gcc--UG- AAGA|-GC|C GUCG-(AAGA 4501 CU-A)CGACG -UUGAUAG|G CCGG|GUGUG -UAAGCGCG- -(GUAA-)-- CGCGU|UG-A 4561 GCUA|A|CCG GUACUAAUU- GCUCGUGCG| GCUUAC-UUU Auccucau|c u~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS H.pylori.1 4759 bp RNA RNA 11-JAN-191 DEFINITION Helicobacter pylori. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter pylori. ORGANISM Helicobacter pylori. REFERENCE 1 (bases 1 to 2975) AUTHORS Hiratsuka,K. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U27270 LOCUS HPU27270 3857 bp DNA BCT 28-JUN-1995 DEFINITION Helicobacter pylori 23S and 5S ribosomal RNA genes, complete sequence. ACCESSION U27270 KEYWORDS . SOURCE Helicobacter pylori. ORGANISM Helicobacter pylori Eubacteria; Proteobacteria; epsilon subdivision; Helicobacter. REFERENCE 1 (bases 1 to 3857) AUTHORS Hiratsuka,K. TITLE Genetic aspects of Helicobacter pylori and Campylobacter jejuni JOURNAL Unpublished (1995) REFERENCE 2 (bases 1 to 3857) AUTHORS Hiratsuka,K. TITLE Direct Submission JOURNAL Submitted (17-MAY-1995) Koji Hiratsuka, Medical Microbiology and Immunology, University of Alberta, Edmonton, Alberta T6G 2H7, Canada COMMENT NCBI gi: 881379 FEATURES Location/Qualifiers source 1..3857 /organism="Helicobacter pylori" /strain="UA802" rRNA 372..3339 /product="23S ribosomal RNA" rRNA 3568..3702 /product="5S ribosomal RNA" BASE COUNT 1128 a 735 c 1002 g 992 t ORIGIN BASE COUNT 855 a 591 c 845 g 677 t 1791 others ORIGIN 1 uaaggcagug guagcgcuga agaauguucg ugcaauuguc guuauucauu auaaa-aggg 61 cggguuuuaa aggauauuuu aaaauuuaAA ACAAGCUUU- --UAAGAGCA GAUGGCGGAU 121 G|CCUUGC|C AAAGAG|AG| GC-GAUGAAG GA|CGUA(CU AG-AC-)U|- GCG-AUAAGC 181 UAUGCG|-GA GCU(G-UC-A AGG-)AGCUU U-GAUG-CGU AGAUG|UCCG AAUGGG(GCA 241 A)CCC|aacu aaua(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----gaga)u auuaguu-ac uc-u-----( 481 ----aac--- --)------a -g-a--gAG- C-GAAC|CU- AGUGAAGU|G A(AACA)UCU 541 CAGUA-ACUA GAGGAAAAGA AAUC(-aac- --)GAGAU|U CC-CUAAGUA GU(GGCGA)G 601 CGA-ACG-GG GA-AAA-GGG CAAAccgagu -g-------- -----(cuug -)-------- 661 --cauucggg gu----ugag gacugcaaca uc-------- ---------- ---------- 721 ---------- ----caagag aacg-cuuua gcaGAGu-ua c-c(u-ggaa a)g-guaagc 781 |c(aua)gaa ag(UGAUAGC )cuugu-aug c-gacaaggc guu-uuuagg ---------- 841 ---------- ---uagcagu aucca---GA GUAGGCCAGG A(CACGAG-G AA)UCCAGGU 901 UGAAGCC-GG G-GA(GACCA C)UC-UCC-A ACUCUAA--- -AUACUACUC UUUGAGCGAU 961 AGCG-AAC-A AGUACC(GUG A)-GGGA-AA GGUGAAAA-G AACCGC(AGU GA-)GCGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAU-CUGCU UACAA-U-CA UUCAGAGCcc -u---aug-- 1081 --------(- ---auu---) ---------- -uauca-ggg UGAUGGACUG CCU(UUU-GC 1141 AU|A)AUGA| -UCCUGCGAG UUGU-GGUA- UCUGGC-AAG GUUAAGC--( --gaau)--G 1201 C-GAAGCCGU AGC(GAAA-) -CGAGUUC(U UAAUA)GGGC GA-------- ---------- 1261 ---------- -----ac-aa G-UCAGAUGC UGCA-GACCC GAAGC-UAA- GUGA-UCUAU 1321 CCAUGGC|CA AGUUGAAACG CGUG(UAAU) AG-CGCGUGG AGGACUGAAC U-CCUACCC( 1381 -AUUGAAAC) GGGUU|GGG- AUGAG-CUGU GGAUAGGGGU (-GAAAG)GC CAAACAAACU 1441 UAGUGAUAGC UGGUUCUCUU CGAAAUAUAU (-UUAG)GUA UAGC|-CUCA AGUGA---U| 1501 -aau|AAAAG G|GGGUAG|A GC-GCUGA-U UGGGCUA-GG |-GCUGC(UC GCC)GCGGUA 1561 CCAAACCCUA -UCAAACUUC GAA-UA-|CC U-U-U-U--- aucg---UA| UCU-UGGGAG 1621 UCAGGC--GG U-GGGU(GAU AAA)AUCAAU -CGUC-AAAA GGG(-GAACA A-)CCCAGAC 1681 UACCAAAUAA G-GU|CCCU- AAGUU-CUAU UC-UGA-GUG ------GAAA AAGAUGUG-U 1741 GGCUACUAA- AACAACCAGG AGGUUGGC(U UAGAAGCA)G CCAU-CCU|U (UAA)A|GAA 1801 AGC(GUAACA )GC|UCACUG GU-----CUA GU-GGU-CA- -UGC|GCUGA AAAU-AUAA- 1861 CGGGGCU-AA GAUAG-A|C| ACCGAAUUU| GUAG|auugu gu-----(ua a--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --acacagu- GG-UAGAAGA G|-----CGU 2221 U-CAU-AC-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --CAGCGU-U 2341 GAAGGUA-U- A-CC(GGUAA -)GGA--GUG CUGG|AGCGG U-AUGAAGUG AGCAUGC-AG 2401 GA|AUG-AGU A--ACGAUAA GAUAUA(UGA GAAU)UGUAU C|CGCC-GUA AAUCUAAGGU 2461 UUCCUA-CGC GAUG-(GUCG U)CA|U-CGU AGGGUUAGU| CGG|G-UCCU AAGCCGAGUC 2521 C(GAAA)-G- GGGU-AGGUG AUGG-CAAAU UGG-(UU-AA UAUU)C-CAA U|AC|cg-a- 2581 cu-gug-gag c--------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -----gugau -------ggg g--gga-cgc auaggguua- agcg-a-|gc u-agc(ug-- 2761 augg-a-agc --)gc-uagu -|cuaa---- ---------- ---gggc-gu agauu----- 2821 ---ggag-gg aagg(ca-aa -u-)cc|a-- ccucugu--- ---------- -auuugaaac 2881 ccaaacag|g cu-|------ cuuugagucc u(-uuu---) aggacaaagg g-----agaa 2941 --ucgcu-ga uacc-guc-| gugccaagaa a-agccucua agca------ ------ua-u 3001 ccauag--uc g|U|CCGUAC CGCAAACC(G ACACA)GG|U AG-AUGAGA- U-(GAGUA)U 3061 UCUAAGGCGC ||GUGAAAGA ACUCUGGUU- ---------- ----AAGGAA CUCUGCAAAC 3121 UAGCACCGUA AG(-UUCG)C GAUAAGGUGU |gccaca--- ---------- ---------- 3181 -(-gcga-)- ---------- ---------- --ugugg-U| C(UCA)GCAA AGAGUCC-CU 3241 CC|CGACU-- ---GU(UUAC CAAAA)ACAC AGCACUUUG| CCAACUC(GU AA------)G 3301 AGGAAGU-AU AAGGUGUGA- CGCCUGCCCG GU|GCUC-GA A-GGUUAAGA GGAUgcguca 3361 guc------- (G-CAA)--- -------gau ga-agcguug aaUUGAAGCC |CGAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGU(U 3481 AAAU)ACCGA C|CUGCAUGA AUGGCGUAAC GA-GAUGGGA GCUGUCUCAA CCAGAGAUUC 3541 A|GUGAAAUU |GUAGUGG-A GG(UGAAAAU U)CCUCCUAC CCGCGGC-AA GACGGAAAGA 3601 CCCCGUGG|A CCU-UUACUA C|AACUUAGC ACU|GCUAAU GGGAAUAUCA UGCGCAGGAU 3661 AGGUGGGAGG CUUUGAAG-- UAAGGGC(UU UG)GCUCUUA UGGAGUCAUC -C-UUGAGAU 3721 ACCACC|CUU G-AUGUUUCU GUU-AGCUAA -CUGGCC--- -UGUG(--UU -AUC)-CACA 3781 GGCAG-GACA AUGCUUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|G-CUC C(UAA-AAAG 3841 UAAC)GGAGG C|U|U|GCAA AGGUUGGC|U CAUUGCGG(U UGGAAA)UCG CAAGUU-GA| 3901 GU(G|UAAUG )GCACAAGCC AGCCUGACUG UAAGAC(AUA CAA)GUCAAG CAGAGAC(GA 3961 AA)GU-CGGU |CAUAGUGAU CCGGUGGUUC UG(UGUGGA) AGG|GCCAUC GCUCAAA|GG 4021 AUAAAAGGUA CCC|CGGG|G AUAACAG|GC UGA--UCUCC CCCAAGA(G- CUC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GGAG 4141 C---A)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|CG-UAG 4261 GAAAGUU|GA -|GGAGAGC- UGU------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACG UGUCACUGGU GCACCAGU|U G-UCU(GC-C A-)AGAGCA- UCGCUGGGUA 4381 GC--ACACAC GGAUGUGAUA ACUGCU(GAA AGCAUCUA)A GCAGGAACCA -ACUCC|AAG 4441 AUAAACUUUC C|CU|----- -(------)- --------G- AAGC|-UC|G CACA-(AAGA 4501 CU-A)UGUGC -UUGAUAG|G GUAG|AUGUG -UGAGCGCA- -(GUAA-)-- UGCGU|UU-A 4561 GCUG|A|CUA CUACUAAUA- GAGCGUUUG| GCUUGU-UUU U-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS H.pylori.2 4759 bp RNA RNA 06-AUG-1997 DEFINITION Helicobacter pylori.; . ACCESSION AE0005 8 AE00 511 KEYWORDS . SOURCE Helicobacter pylori. ORGANISM Helicobacter pylori. REFERENCE 1 (bases 1 to 10210) AUTHORS Gocayne, Utterback, Peterson, Kelley, Cotton, Weidman, Fujii, Bowman, Watthey, Wallin, Hayes, Borodovsky, Karp, Smith, Fraser and Venter. Tomb, White, Kerlavage, Clayton, Sutton, Fleischmann, Ketchum, Klenk, Gill, Dougherty, Nelson, Quackenbush, Zhou, Kirkness, Peterson, Loftus, Richardson, Dodson, Khalak, Glodek, McKenney, Fitzegerald, Lee, Adams, Hickey, Berg, TITLE The complete genome sequence of the gastric pathogen Helicobacter pylori JOURNAL Nature 388, 539-547 (1997) STANDARD No information REFERENCE 2 (bases 1 to 10210) AUTHORS Tomb, White, Kerlavage, Clayton, Sutton, Fleischmann, Ketchum, Klenk, Gill, Dougherty, Nelson, Quackenbush, Zhou, Kirkness, Peterson, Loftus, Richardson, Dodson, Khalak, Glodek, McKenney, Fitzegerald, Lee, Adams, Hickey, Berg, Gocayne, Utterback, Peterson, Kelley, Cotton, Weidman, Fujii, Bowman, Watthey, Wallin, Hayes, Borodovsky, Karp, Smith, Fraser and Venter. TITLE Direct Submission JOURNAL Submitted (06-AUG-1997) The Institute for Genomic Research, 9712 Medical Center Dr, Rockville, MD 20850, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: AE000558 Address all correspondence to: hpdb@tigr.org or J. Craig Venter The Institute for Genomic Research 9712 Medical Center Dr. Rockville, MD, 20850 Douglas E. Berg is with the Washington University St. Louis School of Medicine, St. Louis, MO 63110. Eric Wallin is with Stockholm University Department of Biochemistry, Stockholm, Sweden Hamilton O. Smith is with the Johns Hopkins University School of Medicine, Baltimore, MD, 21205. Mark Borodovsky and William S. Hayes are with the School of Biology, Georgia Tech, Atlanta, GA, 30332. Peter D. Karp is with SRI International, Artificial Intelligence Center, Menlo Park, CA, 94025. All other authors are with The Institute for Genomic Research, 9712 Medical Center Dr., Rockville, MD, 20850. Coding potential analysis was performed using GeneMark software, kindly supplied by Mark Borodovsky, Georgia Institute of Technology, Atlanta, GA, 30332. e-mail: mark@amber.gatech.edu Submission and annotation: Owen White e-mail: owhite@tigr.org Biological role information, putative identifications, sequence alignments, on-line name and sequence search capability are available at TIGR's World Wide Web site. (URL: http://www.tigr.org/tdb/mdb/hpdb/hpdb.html). BASE COUNT 856 a 594 c 846 g 679 t 1784 others ORIGIN 1 uaaggcagug guagcgcuga agaauauucg ugcaauuguc guuauucauu auaaaaaggg 61 cggguuuuaa aggauauuuu aaaauuuaAA ACAAGCUUU- --UAAGAGCA GAUGGCGGAU 121 G|CCUUGC|C AAAGAG|AG| GC-GAUGAAG GA|CGUA(CU AG-AC-)U|- GCG-AUAAGC 181 UAUGCG|-GA GCU(G-UC-A AGg-)AGCUU U-GAUG-CGU AGAUG|UCCG AAUGGG(GCA 241 A)CCC|aacu aaua(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----gaga)u auuaguu-ac uc-u-----( 481 ---uuaau-- --)------a -g-a--gAG- C-GAAC|CU- AGUGAAGU|G A(AACA)UCU 541 CAGUA-ACUA GAGGAAAAGA AAUC(-aac- --)GAGAU|U CC-CUAAGUA GU(GGCGA)G 601 CGA-ACG-GG GA-AAA-GGG CAAAccgagu -g-------- -----(cuug -)-------- 661 --cauucggg gu----ugag gacugcaaca uc-------- ---------- ---------- 721 ---------- ----caagag aacg-cuuua gcaGAGu-ua c-c(u-ggaa a)g-guaagc 781 |c(aua)gaa ag(UGAUAGC )cuugu-aug c-gacaaggc guu-cuuagg ---------- 841 ---------- ---uagcagu aucca---GA GUAGGCCAGG A(CACGAG-A AA)UCCAGGU 901 UGAAGCC-GG G-GA(GACCA C)UC-UCC-A ACCCUAA--- -AUACUACUC UUUGAGCGAU 961 AGCG-AAC-A AGUACC(GUG A)-GGGA-AA GGUGAAAA-G AACCGC(AGU GA-)GCGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAU-CUGCU UACAA-U-CA UUCAGAGCcc -u---aug-- 1081 --------(- ---auu---) ---------- -uauca-ggg UGAUGGACUG CCU(UUU-GC 1141 AU|A)AUGA| -UCCUGCGAG UUGU-GGUA- UCUGGC-AAG GUUAAGC--( --gaau)--G 1201 C-GAAGCCGU AGC(GAAA-) GCGAGUCU(U AA-UA)GGGC GA-------- ---------- 1261 ---------- -----ac-aa G-UCAGAUGC UGCA-GACCC GAAGC-UAA- GUGA-UCUAU 1321 CCAUGGC|CA AGUUGAAACG CGUG(UAAU) AG-CGCGUGG AGGACUGAAC U-CGUACCC( 1381 -AUUGAAAC) GGGUU|GGG- AUGAG-CUGU GGAUAGGGGU (-GAAAG)GC CAAACAAACU 1441 UAGUGAUAGC UGGUUCUCUU CGAAAUAUAU (-UUAG)GUA UAGC|-CUCA AGUGA---U| 1501 -aau|AAAAG G|GGGUAG|A GC-CCUGA-U UGGGCUA-GG |-GCUGC(UC GCC)GCGGUA 1561 CCAAACCCUA -UCAAACUUC GAA-UA-|CC U-U-U-U--- aucg---UA| UCU-UGGGAG 1621 UCAGGC--GG U-GGGU(GAU AAA)AUCAAU -CGUC-AAAA GGG(-GAACA A-)CCCAGAC 1681 UACCAAAUAA G-GU|CCCU- AAGUU-CUAU UC-UGA-GUG ------GAAA AAGAUGUG-U 1741 GGCUACUCA- AACAACCAGG AGGUUGGC(U UAGAAGCA)G CCAU-CCU|U (UAA)A|GAA 1801 AGC(GUAACA )GC|UCACUG GU-----CUA GU-GGU-CA- -UGC|GCUGA AAAU-AUAA- 1861 CGGGGCU-AA GAUAG-A|C| ACCGAAUUU| GUAG|auugu gu-----(ua a--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --acacagu- GG-UAGAAGA G|-----CGU 2221 U-CAU-AC-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --CAGCGU-U 2341 GAAGGUA-U- A-CC(GGUAA -)GGA--GUG CUGG|AGCGG U-AUGAAGUG AGCAUGC-AG 2401 GA|AUG-AGU A--ACGAUAA GAUAUA(UGA GAAU)UGUAU C|CGCC-GUA AAUCUAAGGU 2461 UUCCUA-CGC GAUG-(GUCG U)CA|U-CGU AGGGUUAGU| CGG|G-UCCU AAGCCGAGUC 2521 C(GAAA)-G- GGGU-AGGUG AUGG-CAAAU UGG-(UU-AA UAUU)C-CAA U|AC|cg-a- 2581 cu-gug-gag c--------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -----gugau -------ggg g--gga-cgc auaggguua- agcg-a-|gc u-agc(ug-- 2761 augg-a-agc --)gc-uagu -|cuaa---- ---------- ---gggc-gu agauu----- 2821 ---ggag-gg aagg(ca-aa -u-)cc|a-- ccucugu--- ---------- -auuugaaac 2881 ccaaacag|g cu-|------ cuuugagucc u(-uuu---) aggacaaagg g-----agaa 2941 --ucgcu-ga uacc-guc-| gugccaagaa a-agucucua agca------ ------ua-u 3001 ccauag--uc g|U|CCGUAC CGCAAACC(G ACACA)GG|U AG-AUGAGA- U-(GAGUA)U 3061 UCUAAGGCGC ||GUGAAAGA ACUCUGGUU- ---------- ----AAGGAA CUCUGCAAAC 3121 UAGCACCGUA AG(-UUCG)C GAUAAGGUGU |GCcaca--- ---------- ---------- 3181 -(-gcga-)- ---------- ---------- --ugugg-U| C(UCA)GCAA AGAGUCC-CU 3241 CC|CGACU-- ---GU(UUAC CAAAA)ACAC AGCACUUUG| CCAACUC(GU AA------)G 3301 AGGAAGU-AU AAGGUGUGA- CGCCUGCCCG GU|GCUC-GA A-GGUUAAGA GGAUgcguca 3361 guc------- (G-CAA)--- -------gau ga-agcguug aaUUGAAGCC |CGAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGU(U 3481 AAAU)ACCGA C|CUGCAUGA AUGGCGUAAC GA-GAUGGGA GCUGUCUCAA CCAGAGAUUC 3541 A|GUGAAAUU |GUAGUGG-A GG(UGAAAAU U)CCUCCUAC CCGCGGC-AA GACGGAAAGA 3601 CCCCGUGG|A CCU-UUACUA C|AACUUAGC ACU|GCUAAU GGGAAUAUCA UGCGCAGGAU 3661 AGGUGGGAGG CUUUGAAG-- UAAGGGC(UU UG)GCUCUUA UGGAGCCAUC -C-UUGAGAU 3721 ACCACC|CUU G-AUGUUUCU GUU-AGCUAA -CUGGCC--- -UGUG(--UU -AUC)-CACA 3781 GGCAG-GACA AUGCUUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAAG 3841 UAAC)GGAGG C|U|U|GCAA AGGUUGGC|U CAUUGCGG(U UGGAAA)UCG CAAGUU-GA| 3901 GU(G|UAAUG )GCACAAGCC AGCCUGACUG UAAGAC(AUA CAA)GUCAAG CAGAGAC(GA 3961 AA)GU-CGGU |CAUAGUGAU CCGGUGGUUC UG(UGUGGA) AGG|GCCAUC GCUCAAA|GG 4021 AUAAAAGGUA CCC|CGGG|G AUAACAG|GC UGA--UCUCC CCCAAGA(G- CUC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GGAG 4141 C---A)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|CG-UAG 4261 GAAAGUU|GA -|GGAGAGC- UGU------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACG UGUCACUGGU GCACCAGU|U GUUCU(GC-C A-)AGAGCA- UCGCUGGGUA 4381 GCU-ACACAC GGAUGUGAUA ACUGCU(GAA AGCAUCUA)A GCAGGAAGCC AACUCC|AAG 4441 AUGAACUUUC C|CU|----- -(------)- --------G- AAGC|-UC|G CACA-(AAGA 4501 CU-A)UGUGC -UUGAUAG|G GUAG|AUGUG -UGAGCGCA- -(GUAA-)-- UGCGU|UU-A 4561 GCUG|A|CUA CUACUAAUA- GAGCGUUUG| GCUUGU-UUU U-------|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS H.pylori.3 4759 bp RNA RNA 06-AUG-1997 DEFINITION Helicobacter pylori.; . ACCESSION AE0006 1 AE00 511 KEYWORDS . SOURCE Helicobacter pylori. ORGANISM Helicobacter pylori. REFERENCE 1 (bases 1 to 10823) AUTHORS Glodek, McKenney, Fitzegerald, Lee, Adams, Hickey, Berg, Gocayne, Utterback, Peterson, Kelley, Cotton, Weidman, Fujii, Bowman, Watthey, Wallin, Hayes, Borodovsky, Karp, Smith, Fraser and Venter. Tomb, White, Kerlavage, Clayton, Sutton, Fleischmann, Ketchum, Klenk, Gill, Dougherty, Nelson, Quackenbush, Zhou, Kirkness, Peterson, Loftus, Richardson, Dodson, Khalak, TITLE Helicobacter pylori The complete genome sequence of the gastric pathogen JOURNAL Nature 388, 539-547 (1997) STANDARD No information REFERENCE 2 (bases 1 to 10823) AUTHORS Tomb, White, Kerlavage, Clayton, Sutton, Fleischmann, Ketchum, Klenk, Gill, Dougherty, Nelson, Quackenbush, Zhou, Kirkness, Peterson, Loftus, Richardson, Dodson, Khalak, Glodek, McKenney, Fitzegerald, Lee, Adams, Hickey, Berg, Gocayne, Utterback, Peterson, Kelley, Cotton, Weidman, Fujii, Bowman, Watthey, Wallin, Hayes, Borodovsky, Karp, Smith, Fraser and Venter. TITLE Direct Submission JOURNAL Submitted (06-AUG-1997) The Institute for Genomic Research, 9712 Medical Center Dr, Rockville, MD 20850, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: AE000641 Address all correspondence to: hpdb@tigr.org or J. Craig Venter The Institute for Genomic Research 9712 Medical Center Dr. Rockville, MD, 20850 Douglas E. Berg is with the Washington University St. Louis School of Medicine, St. Louis, MO 63110. Eric Wallin is with Stockholm University Department of Biochemistry, Stockholm, Sweden Hamilton O. Smith is with the Johns Hopkins University School of Medicine, Baltimore, MD, 21205. Mark Borodovsky and William S. Hayes are with the School of Biology, Georgia Tech, Atlanta, GA, 30332. Peter D. Karp is with SRI International, Artificial Intelligence Center, Menlo Park, CA, 94025. All other authors are with The Institute for Genomic Research, 9712 Medical Center Dr., Rockville, MD, 20850. Coding potential analysis was performed using GeneMark software, kindly supplied by Mark Borodovsky, Georgia Institute of Technology, Atlanta, GA, 30332. e-mail: mark@amber.gatech.edu Submission and annotation: Owen White e-mail: owhite@tigr.org Biological role information, putative identifications, sequence alignments, on-line name and sequence search capability are available at TIGR's World Wide Web site. (URL: http://www.tigr.org/tdb/mdb/hpdb/hpdb.html). BASE COUNT 857 a 596 c 843 g 679 t 1784 others ORIGIN 1 uaaggcagug guagcgcuga agaauauucg ugcaauuguc guuauucauu auaaaaaggg 61 cggguuuuaa aggauauuuu aaaauuuaAA ACAAGCUUU- --UAAGAGCA GAUGGCGGAU 121 G|CCUUGC|C AAAGAG|AG| GC-GAUGAAG GA|CGUA(CU AG-AC-)U|- GCG-AUAAGC 181 UAUGCG|-GA GCU(G-UC-A AGg-)AGCUU U-GAUG-CGU AGAUG|UCCG AAUGGG(GCA 241 A)CCC|aacu aaua(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----gaga)u auuaguu-ac uc-u-----( 481 ---uuaau-- --)------a -g-a--gAG- C-GAAC|CU- AGUGAAGU|G A(AACA)UCU 541 CAGUA-ACUA GAGGAAAAGA AAUC(-aac- --)GAGAU|U CC-CUAAGUA GU(GGCGA)G 601 CGA-ACG-GG GA-AAA-GGG CAAAccgagu -g-------- -----(cuug -)-------- 661 --cauucggg gu----ugag gacugcaaca uc-------- ---------- ---------- 721 ---------- ----caagag aacg-cuuua gcaGAGu-ua c-c(u-ggaa a)g-guaagc 781 |c(aua)gaa ag(UGAUAGC )cuugu-aug c-gacaaggc guu-cuuagg ---------- 841 ---------- ---uagcagu aucca---GA GUAGGCCAGG A(CACGAG-A AA)UCCAGGU 901 UGAAGCC-GG G-GA(GACCA C)UC-UCC-A ACCCUAA--- -AUACUACUC UUUGAGCGAU 961 AGCG-AAC-A AGUACC(GUG A)-GGGA-AA GGUGAAAA-G AACCGC(AGU GA-)GCGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAU-CUGCU UACAA-U-CA UUCAGAGCcc -u---aug-- 1081 --------(- ---auu---) ---------- -uauca-ggg UGAUGGACUG CCU(UUU-GC 1141 AU|A)AUGA| -UCCUGCGAG UUGU-GGUA- UCUGGC-AAG GUUAAGC--( --gaau)--G 1201 C-GAAGCCGU AGC(GAAA-) GCGAGUCU(U AA-UA)GGGC GA-------- ---------- 1261 ---------- -----ac-aa G-UCAGAUGC UGCA-GACCC GAAGC-UAA- GUGA-UCUAU 1321 CCAUGGC|CA AGUUGAAACG CGUG(UAAU) AG-CGCGUGG AGGACUGAAC U-CGUACCC( 1381 -AUUGAAAC) GGGUU|GGG- AUGAG-CUGU GGAUAGGGGU (-GAAAG)GC CAAACAAACU 1441 UAGUGAUAGC UGGUUCUCUU CGAAAUAUAU (-UUAG)GUA UAGC|-CUCA AGUGA---U| 1501 -aau|AAAAG G|GGGUAG|A GC-CCUGA-U UGGGCUA-GG |-GCUGC(UC GCC)GCGGUA 1561 CCAAACCCUA -UCAAACUUC GAA-UA-|CC U-U-U-U--- aucg---UA| UCU-UGGGAG 1621 UCAGGC--GG U-GGGU(GAU AAA)AUCAAU -CGUC-AAAA GGG(-GAACA A-)CCCAGAC 1681 UACCAAAUAA G-GU|CCCU- AAGUU-CUAU UC-UGA-GUG ------GAAA AAGAUGUG-U 1741 GGCUACUCA- AACAACCAGG AGGUUGGC(U UAAAAGCA)C CCAU-CCU|U (UAA)A|NAA 1801 AGC(GUAACA )GC|UCACUG GU-----CUA GU-GGU-CA- -UGC|GCUGA AAAU-AUAA- 1861 CGGGGCU-AA GAUAG-A|C| ACCGAAUUU| GUAG|auugu gu-----(ua a--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --acacagu- GG-UAGAAGA G|-----CGU 2221 U-CAU-AC-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --CAGCGU-U 2341 GAAGGUA-U- A-CC(GGUAA -)GGA--GUG CUGG|AGCGG U-AUGAAGUG AGCAUGC-AG 2401 GA|AUG-AGU A--ACGAUAA GAUAUA(UGA GAAU)UGUAU C|CGCC-GUA AAUCUAAGGU 2461 UUCCUA-CGC GAUG-(GUCG U)CA|U-CGU AGGGUUAGU| CGG|G-UCCU AAGCCGAGUC 2521 C(GAAA)-G- GGGU-AGGUG AUGG-CAAAU UGG-(UU-AA UAUU)C-CAA U|AC|cg-a- 2581 cu-gug-gag c--------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -----gugau -------ggg g--gga-cgc auaggguua- agcg-a-|gc u-agc(ug-- 2761 augg-a-agc --)gc-uagu -|cuaa---- ---------- ---gggc-gu agauu----- 2821 ---ggag-gg aagg(ca-aa -u-)cc|a-- ccucugu--- ---------- -auuugaaac 2881 ccaaacag|g cu-|------ cuuugagucc u(-uuu---) aggacaaagg g-----agaa 2941 --ucgcu-ga uacc-guc-| gugccaagaa a-agucucua agca------ ------ua-u 3001 ccauag--uc g|U|CCGUAC CGCAAACC(G ACACA)GG|U AG-AUGAGA- U-(GAGUA)U 3061 UCUAAGGCGC ||GUGAAAGA ACUCUGGUU- ---------- ----AAGGAA CUCUGCAAAC 3121 UAGCACCGUA AG(-UUCG)C GAUAAGGUGU |GCcaca--- ---------- ---------- 3181 -(-gcga-)- ---------- ---------- --ugugg-U| C(UCA)GCAA AGAGUCC-CU 3241 CC|CGACU-- ---GU(UUAC CAAAA)ACAC AGCACUUUG| CCAACUC(GU AA------)G 3301 AGGAAGU-AU AAGGUGUGA- CGCCUGCCCG GU|GCUC-GA A-GGUUAAGA GGAUgcguca 3361 guc------- (G-CAA)--- -------gau ga-agcguug aaUUGAAGCC |CGAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGU(U 3481 AAAU)ACCGA C|CUGCAUGA AUGGCGUAAC GA-GAUGGGA GCUGUCUCAA CCAGAGAUUC 3541 A|GUGAAAUU |GUAGUGG-A GG(UGAAAAU U)CCUCCUAC CCGCGGC-AA GACGGAAAGA 3601 CCCCGUGG|A CCU-UUACUA C|AACUUAGC ACU|GCUAAU GGGAAUAUCA UGCGCAGGAU 3661 AGGUGGGAGG CUUUGAAG-- UAAGGGC(UU UG)GCUCUUA UGGAGCCAUC -C-UUGAGAU 3721 ACCACC|CUU GcAUGUUUCU GUU-AGCUAA -CUGGCC--- -UGUG(--UU -AUC)-CACA 3781 GGCAG-GACA AUGCUUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAAG 3841 UAAC)GGAGG C|U|U|GCAA AGGUUGGC|U CAUUGCGG(U UGGAAA)UCG CAAGUU-GA| 3901 GU(G|UAAUG )GCACAAGCC AGCCUGACUG UAAGAC(AUA CAA)GUCAAG CAGAGAC(GA 3961 AA)GU-CGGU |CAUAGUGAU CCGGUGGUUC UG(UGUGGA) AGG|GCCAUC GCUCAAA|GG 4021 AUAAAAGGUA CCC|CGGG|G AUAACAG|GC UGA--UCUCC CCCAAGA(G- CUC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GGAG 4141 C---A)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|CG-UAG 4261 GAAAGUU|GA -|GGAGAGC- UGU------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACG UGUCACUGGU GCACCAGU|U GUUCU(GC-C A-)AGAGCA- UCGCUGGGUA 4381 GCU-ACACAC GGAUGUGAUA ACUGCU(GAA AGCAUCUA)A GCAGGAAGCC AACUCC|AAG 4441 AUGAACUUUC C|CU|----- -(------)- --------G- AAGC|-UC|G CACA-(AAGA 4501 CU-A)UGUGC -UUGAUAG|G GUAG|AUGUG -UGAGCGCA- -(GUAA-)-- UGCGU|UU-A 4561 GCUG|A|CUA CUACUAAUA- GAGCGUUUG| GCUUGU-UUU U-------|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS PURPLE.EPS 4759 bp RNA RNA 17-JAN-1993 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 4759 others ORIGIN 1 -x~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~-)~|- ~~~~~~~~~~ 181 ~~~~~~|-~~ ~~~(~-~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~--- ---------- ---------- 301 -----~~~~~ ~~~~~~~~~~ ~~~~~~---- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- -----~-~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~|~ ~~-~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---- 721 ---~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~)~~~~~-~ 781 ~|(~~~)~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~- ~~)~~~~~~~ 901 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ 961 ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~-~~-~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)|~~~~ -|~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~-~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~-~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 1321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 -~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~-|~~- ~~~~~~~~~~ 1501 |-~~-~~~~~ ~~~~~~~~~| ~~~~~~~~-~ ~~~~~~~~~~ ~-|~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~-~~~~ |~~~~~~~~~ 1621 ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~-~~~~ ~~-~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~-~~~~-~~ ~~----~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~- -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~-~ --~~-|~~~~ ~~~~~-~~~~ 1861 ~~~~~~~~~~ ~~~~~-~~|~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~-----|~~ 2221 ~~-~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 -~~~~~~~~~ -~-~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~-~ 2401 ~~|~~~~-~~ ~-~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~-~~ ~~~~~~-~~~ ~~~~|~~~~- 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~------~~~ ~~--~~-~~~ ~~~~~~~~~- ~~~~-~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ---------- --~~~~~~~~ ~~~~~~~~-- 2821 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~----~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 --~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~-~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~- ---~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~---~~~~~ 3301 ~~~~~~~~-~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~-~~ ~-~~-~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~( ~~~)~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ 3721 ~~~~~~|~~~ ~~~-~~~~~~ ~~~~~-~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~-~~-~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~|~|~|~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~---~ ~~~~~~-~~~ 3901 ~|~~(~|~~~ ~~)~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~-~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~~~|~~~~ ~~~~~~~~~| 4021 ~~~~~~~~~~ ~~~~~|~~~~ |~~~~~~-~| ~~~~~--~~~ ~~~~~~~~~( ~~~~~~~~~) 4081 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~|~~~~|~~~ ~~~~~~~~~| ~~~~~(~~~~ 4141 ~~~--)-~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ -~~~~|~~~~ ~~~~~|~~~~ 4261 ~~~~~~~~-| ~~-~~~~~-~ ~~~~~----- ---------~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4381 ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ 4441 ~~~~~~~~~~ ~~~|~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~-~~~ 4501 ~~~~-~~~~~ ~~~~~~~~~~ |~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~~~|~~ 4561 ~~~~|~-~|~ ~~~~~~~~~~ ~~~~~~--~~ ~|~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~||||| // LOCUS W.succinog 4759 bp RNA RNA 03-JUL-1997 DEFINITION Wolinella succinogenes.; 23S ribosomal RNA; 23S rRNA gene. ACCESSION X87295 KEYWORDS 23S ribosomal RNA; 23S rRNA gene. SOURCE Wolinella succinogenes. ORGANISM Wolinella succinogenes. REFERENCE 1 (bases 1 to 2899) AUTHORS Bachleitner,M., Klugbauer,N., Springer,N., Lane,D., Nietupsky ,R., Weizenegger,M. and Schleifer,K.H. Ludwig,W., Rossello-Mora,R., Aznar,R., Klugbauer,S., Spring,S ., Reetz,K., Beimfohr,C., Brockmann,E., Kirchhof,G., Dorn,S., TITLE Comparative sequence analysis of 23S rRNA from proteobacteria JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2899) AUTHORS Ludwig,W. TITLE Direct Submission JOURNAL Submitted (18-MAY-1995) W. Ludwig, Lehrstuhl fuer Mikrobiologie, Technische Universitaet Muenchen, Muenchen, FRG STANDARD No information REFERENCE 3 (bases 1 to 2899) AUTHORS Ludwig,W., Rossello-Mora,R., Aznar,R., Klugbauer,S., Spring,S., Reetz,K., Beimfohr,C., Brockmann,E., Kirchhof,G. , Dorn,S., Bachleitner,M., Klugbauer,N., Springer,N., Lane, D., Nietupsky,R., Weizenegger,M. and Schleifer,K.H. TITLE Comparative sequence analysis of 23S rRNA from proteobacteria JOURNAL Syst. Appl. Microbiol. 18, 164-188 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X87295 BASE COUNT 804 a 613 c 840 g 642 t 1860 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- -gaaguagaA AUAAGCUUU- --UAAGGGCA GAUGGUGGAU 121 G|CCUUGG|G UAGUAG|AG| GC-GAUGAAG GA|CGUA(CU AG-GC-)U|- GCG-AUAAGC 181 UUCGGG|-GA GUU(G-CC-A AGA-)GACUU UG-AUC-CGA AGAUU|UCCG AAUGGG(GCA 241 A)CCC|aaua caua(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----gaga)u auguauu-ac cu-------( 481 ---uuaa--- --)------- -u-g--gAG- C-GAAC|CU- AGUGAAGU|G A(AACA)UCU 541 CAGUA-GCUA GAGGAAAAGA AAUC(-AAAU --)GAGAU|U CC-GCUAGUA GC(GGCGA)G 601 CGA-ACG-CG GA-ACA-GGG CAAGccagua -g-------- -----(cuug -)-------- 661 -----cuacu gggguug-ag gacu------ ---------- ---------- ---------- 721 ------gcaa cauccacuug gaacaucu-a guaGAAu-cu u-u(u-ggaa a)g-aagagc 781 |c(aua)gaG GG(UGAUAGC )CCCGU-Aga u-uaaagaug uuucauaggu agca------ 841 ---------- --------gu aucca---GA GUAGGCCAGG A(CACGAG-A AA)UCCGGGC 901 UGAAGCA-GG G-GA(GACCA C)UC-UCC-A ACCCUAA--- -AUACUCCUA CUACACCGAU 961 AGCG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G AACUGA(AGC GA-)UCAGA- 1021 -GUGAAA-UA GAACCUGAAA CCAU-CUGCC UACAA-U-CA UUCGGAGCCC -UAU-GG--- 1081 --------(- ---uuua--) ---------- --UCCA-GGG UGACGGACUG CCU(UUU-GC 1141 AU|A)AUGA| -UCCUGCGAG UUGU-GGUA- UCUGGC-GAG GUUAAGC--( --GAAC)--G 1201 C-GUAGCCGU AGC(GAAA-) GCGAGUCU(U AA-UA)GGGC Gc-------- ---------- 1261 ---------- ------uuua G-UCAGAUGC UGCA-GACCC GAAGC-UAA- GUGA-UCUAU 1321 CCAUGGC|CA GGUUGAAAGU GAGG(UAAC) AC-UCACCGG AGGACCGAAC U-CGUGCCC( 1381 -AUUGAAAC) GGGCU|GGGA U-GAG-CUGU GGAUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 UAGUGAUAGC UGGUUCUCUU CGAAAUAUAU (-UUAG)GUA UAGC|-CUCa agugau--a| 1501 -gua|auaa- g|GGGUAG|A GC-UCUGA-U UGGGCUA-GG |-GCUGC(uc acc)GCGGUA 1561 CCAAACCCUG -UCAAACUUC GAA-UA-|C- U-U-A-U-ua ccgu----a| ucu-ugggAG 1621 UCAGGC--GG U-GGGU(GAU AAA)AUCAAU -CGUC-AAAA GGG(-GAACA A-)CCCAGAC 1681 UACCAAAUAA G-GU|CCCA- AAGUC-AUAC -C-UGA-GUG ------GAAA AAGAUGUG-G 1741 AGUUACUCA- GACAACCAGG AGGUUGGC(U UAGAAGCA)G CCAU-CCU|U (UAA)A|GAA 1801 AGC(GUAACA )GC|UCACUG GU-----CUA GU-GAU-UC- -UGC|GCUGA AAAU-AUAA- 1861 CGGGGCU-AA GGUAU-G|C| ACCGAAUUU| GUAG|auugu gc-----(ug au-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --gcacagu- GG-UAGAAGA G|-----CGU 2221 U-CUA-GU-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- -ca-GCGU-U 2341 GAAGGUA-U- A-CC(GGCAA -)GGA--GUG CUGG|AGCGG C-UAGAAGUG AGCAUGC-AG 2401 GA|AUG-AGU A--GCGAUAA AAGUGG(UGA GAAU)CCACU U|CGCC-GUA AAUCCAAGGU 2461 UUCCUA-CGC UAUG-(CUCG U)CA|U-CGU AGGGUUAGU| CGG|G-UCCU AAGUCGAGUC 2521 C(GAAA)-G- GGGU-AGACG AUGG-CAAAU CGG-(UU-AA UAUU)C-CGA U|AC|cg-a- 2581 cc-gug-gug ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -----ugcga c------ggg g--gga-cgc auaggguua- aacg-a-|gc c-aac(ug-- 2761 acggaa-ua- --)gu-uggu -|cgaa---- ---------- ---gggc-gu aggu------ 2821 --ugggg-ga uagg(ca-aa -u-)cc|a-- ccccug--ua ---------- -ucc-gaaac 2881 cuc-acag|g cu-|------ -cuuugaagu c(-uccg--) gauggauagg ------agaa 2941 --ucguu-ga uacc-guc-| gugccaagaa a-agccuc-u aaguuu---- ------ag-c 3001 -cacgg--uc g|C|CCGUAC CGUAAACC(G ACACA)GG|U GG-AUGAGA- U-(GAGUA)U 3061 UCUAAGGCGC ||GUGAAAGA ACUCUGGUU- ---------- ----AAGGAA CUCUGCAAAC 3121 UAACACCGUA AG(-UUCG)C GAUAAGGUGU |Gcccc---- ---------- ---------- 3181 -(-gcaag)- ---------- ---------- ---gggg-U| C(UCA)GCAA AGAGUCC-CU 3241 CC|CGACU-- ---GU(UUAC CAAAA)ACAC AGCACUUUG| CCAACUC(GU AA------)G 3301 AGGAAGU-AU AAGGUGUGA- CGCCUGCCCG GU|GCUC-GA A-GGUUAAGA GGAUCUGUCA 3361 GC-------c (G-CAA)g-- --------GC GA-AGCUUUG AAUUGAAGCC |CGAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGU(U 3481 AAAU)ACCGA C|CUGCAUGA AUGGCGUAAC GA-GAUGGGA GCUGUCUCAA CCAGGGAUUC 3541 A|GUGAAAUU |GUAGUGG-A GG(UGAAAAU U)CCUCCUAC CCGCGGC-AA GACGGAAAGA 3601 CCCCGUGG|A CCU-UUACUA C|AGCUUGGC ACU|GCCGAU GGGAGCAUUA UGCGCAGGAU 3661 AGGUGGGAGG CUUUGAAA-- UCUUCAC(UC UG)GUGGAGA UGGAGCCACC -G-UUGAGAU 3721 ACCACC|CUU A-AUGUUUCU GUc-uGCUAA -CUGGCU--- -UGAG(--UU -AUC)-CUCA 3781 AGCAG-GACA AUGCCUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAAG 3841 UAAC)GGAGG C|U|U|GCAA AGGUUGGC|U CAGAAUGG(U UGGAAA)UCA UUCGUU-GA| 3901 GU(G|UAAUG )GCAUAAGCC AGCCUGACUG CGAGAC(AAA CAA)GUCGAG CAGAGUC(GA 3961 AA)GA-CGGU |CAUAGUGAU CCGGUGGUUC UG(UGUGGA) AGG|GCCAUC GCUCAAA|GG 4021 AUAAAAGGUA CCC|CGGG|G AUAACAG|GC UGA--UCUCC CCCAAGA(G- CUC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GGAG 4141 C---A)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|CG-UAG 4261 GAAAGUU|GA -|GGAGAGC- UGU------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACA UGCCACUAGU GUACCAGU|U GUUCU(GC-C A-)AGAGCA- CCGCUGGGUA 4381 GCU-ACGCAU GGUCGUGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAGCC GACUCC|AAG 4441 AUGAACUUUC C|CU|----- -(------)- -------gA- -AGG|-UC|G CAGG-(AAGA 4501 CU-A)CCUGC -UUGAUAG|G UUGG|GUGUG -UAAGCAUG- -(GUAA-)-- CAUGU|UU-A 4561 GCUG|A|CCA AUACUAAUA- GACCGUUUG| GCUUAU-UAU U-------|u aucuacuu~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS A.cryaerop 4759 bp RNA RNA 11-JAN-191 DEFINITION Arcobacter cryaerophilus. ACCESSION No information KEYWORDS No information. SOURCE Arcobacter cryaerophilus. ORGANISM Arcobacter cryaerophilus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X80383 LOCUS AC23SRNA 799 bp DNA BCT 22-MAR-1995 DEFINITION A.cryaerophilus gene for 23S ribosomal RNA (partial). ACCESSION X80383 KEYWORDS 23S ribosomal RNA. SOURCE Arcobacter cryaerophilus. ORGANISM Arcobacter cryaerophilus Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic/microaerophilic, motile, helical/vibrioid bacteria. REFERENCE 1 (bases 1 to 799) AUTHORS Bastyns,K., Chapelli,S., Vandamme,P., Goossens,H. and De Wacheter,R. TITLE Species-specific detection of campylobacters important in veterinary medicine by PCR amplification of 23S rDNA areas JOURNAL Syst. Appl. Microbiol. 17, 563-568 (1994) REFERENCE 2 (bases 1 to 799) AUTHORS Bastyns,K. TITLE Direct Submission JOURNAL Submitted (18-JUL-1994) to the EMBL/GenBank/DDBJ databases. K. Bastyns, University of Antwerpen (UIA), Dept Biochemie, Building T, 2610 Wilrijk, BELGIUM COMMENT NCBI gi: 735911 FEATURES Location/Qualifiers source 1..799 /organism="Arcobacter cryaerophilus" /strain="LMG 7536T" rRNA <1..>799 /note="Positions 1 and 799 of the partial 23S rDNA fragment correspond to position 1107 and 1909 in the Escherichia coli 23S rDNA" /product="23S ribosomal RNA" BASE COUNT 236 a 153 c 218 g 192 t ORIGIN BASE COUNT 236 a 153 c 218 g 192 t 3960 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ 1201 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 1381 ~~~~~~~~~) ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|~~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~GGA AAAU-AUAA- 1861 CGGGGCU-AA GAUGU-A|C| ACCGAAGCU| UUAG|auucg aa-----(uu ua-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --uucgagu- GG-UAGGAGA G|-----CGU 2221 U-CUA-UU-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- -CA-GCGU-U 2341 GAAGGUA-U- A-CC(GGUAA -)GGA--GUG CUGG|AGCGG A-UAGAAGUA AGCAUGC-AG 2401 GC|AUG-AGU A--GCGAUAA UUAAGG(UGA GAAU)CCUUA A|CGCC-GAA AACCCAAGGU 2461 UUCCUA-CGC GAUG-(CUCG U)CA|U-CGU AGGGUUAGU| CGG|G-UCCU AAGUCGAGAC 2521 U(GAAA)-A- GUGU-AGACG AUGG-CAAAU UGG-(UU-AA UAUU)C-CAA U|AC|ca-a- 2581 ca-uau-aag ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -----cgcga u------gug g--gga-cgc auagaguua- aucg-a-|gc u-cac(ug-- 2761 auggaa-ua- --)gu-gggu -|cgaa---- ---------- ---ggac-gu aggu------ 2821 --uguua-ag uagg(ca-aa -u-)cc|g-- cuuaacguua ---------- gacc-gagau 2881 cuu-acag|g cu-|------ -cuugacacu c(-uucg--) gaggagaugg ------agaa 2941 --ucgau-ga uacu-guc-| gugccaagaa a-agccac-u aaguuu---- ------au-u 3001 -auaug--uu g|C|CCGUAC CGUAAACC(G ACACA)GG|U GG-GUGGGA- U-(GAGUA)U 3061 UCUAAGGCGC ||GUGGAAGA ACCCUCUUU- ---------- ----AAGGAA CUCUGCAAAA 3121 UAGCACCGUA UC(-UUCG)G UAUAAGGUGU |GCCU---ac -uuuggua-- ----u-augg 3181 a(-cuugc)u ccaaaaa--- ---gcuaga- g---AGG-U| U(GCA)ACAA AGAGUCC-CU 3241 CC|CGACU-- ---GU(UUAC CAAAA)ACAC AGCACUUUG| CUAACAC(GU AA------)G 3301 UGGAUGU-AU AAGGUGUGA- CGCCUGCCCG GU|GCUC-GA A-GGUUAACU GAUGAUGUCA 3361 GC-------- (G-CAA)--- --------GC GA-AGCAUUU GAUUGAAGCC |CGAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS A.skirrowi 4759 bp RNA RNA 11-JAN-191 DEFINITION Arcobacter skirrowi. ACCESSION No information KEYWORDS No information. SOURCE Arcobacter skirrowi. ORGANISM Arcobacter skirrowi. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X80385 LOCUS AS23SRN 826 bp DNA BCT 22-MAR-1995 DEFINITION A.skirrowi gene for 23S ribosomal RNA (partial). ACCESSION X80385 KEYWORDS 23S ribosomal RNA. SOURCE Arcobacter skirrowi. ORGANISM Arcobacter skirrowi Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic/microaerophilic, motile, helical/vibrioid bacteria. REFERENCE 1 (bases 1 to 826) AUTHORS Bastyns,K., Chapelli,S., Vandamme,P., Goossens,H. and De Wacheter,R. TITLE Species-specific detection of campylobacters important in veterinary medicine by PCR amplification of 23S rDNA areas JOURNAL Syst. Appl. Microbiol. 17, 563-568 (1994) REFERENCE 2 (bases 1 to 826) AUTHORS Bastyns,K. TITLE Direct Submission JOURNAL Submitted (18-JUL-1994) to the EMBL/GenBank/DDBJ databases. K. Bastyns, University of Antwerpen (UIA), Dept Biochemie, Building T, 2610 Wilrijk, BELGIUM COMMENT NCBI gi: 735916 FEATURES Location/Qualifiers source 1..826 /organism="Arcobacter skirrowi" /strain="LMG 6621T" rRNA <1..>826 /note="Positions 1 and 826 of the partial 23S rDNA fragment correspond to position 1082 and 1910 in the Escherichia coli 23S rDNA gene" /product="23S ribosomal RNA" BASE COUNT 241 a 156 c 226 g 203 t ORIGIN BASE COUNT 241 a 156 c 226 g 203 t 3933 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ 1201 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 1381 ~~~~~~~~~) ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|~~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~~~~~~~~ ~GC|UCACUG GU-----CUA GU-GAU-UC- -UGC|GCGGA AAAU-AUAA- 1861 CGGGGCU-AA GAUGU-A|C| ACCGAAGCU| UUAG|auuca au-----(uu uua------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --auugagu- GG-UAGGAGA G|-----CGU 2221 U-CUA-UU-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- -CA-GCGU-U 2341 GAAGGUA-U- A-CC(GGUAA -)GGA--GUG CUGG|AGCGG A-UAGAAGUG AGCAUGC-AG 2401 GC|AUG-AGU A--GCGAUAA UUAAGG(UGA GAAU)CCUUA A|CGCC-GAA AACCCAAGGU 2461 UUCCUA-CGC GAUG-(CUCG U)CA|U-CGU AGGGUUAGU| CGG|G-UCCU AAGUCGAGAC 2521 U(GAAA)-A- GUGU-AGACG AUGG-CAAAU UGG-(UU-AA UAUU)C-CAA U|AC|ca-a- 2581 ca-uau-aag ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -----cgcga u------gug g--gga-cgc auagaguua- aucg-a-|gg u-cac(gg-- 2761 auggaa-gu- --)gu-ggcu -|cgaa---- ---------- ---ggau-gu aggu------ 2821 --uguua-ag uagg(ca-aa -u-)cc|g-- cuuaacagua ---------- gacc-gagau 2881 cuu-acag|g cu-|------ -cuugacacu c(-uucg--) gaggagaugg ------agaa 2941 --ucgau-ga uacu-guc-| gugccaagaa a-agccac-u aaguuu---- ------au-u 3001 -auaug--uu g|C|CCGUAC CGUAAACC(G ACACA)GG|U GG-GUGGGA- U-(GAGUA)U 3061 UCUAAGGCGC ||GUGGAAGA ACCCUCUUU- ---------- ----AAGGAA CUCUGCAAAA 3121 UAGCACCGUA UC(-UUCG)G UAUAAGGUGU |GCCU---ac -uuuggua-- ----u-augg 3181 a(-cuugc)u ucaaaaa--- ---gcuaaa- g---agg-u| u(gCA)ACAA AGAGUCC-CU 3241 CC|CGACU-- ---GU(UUAC CAAAA)ACAC AGCACUUUG| CUAACAC(GU AA------)G 3301 UGGAUGU-AU AAGGUGUGA- CGCCUGCCCG GU|GUUC-GA A-GGUUAAUU GAUGAUGUCA 3361 GC-------- (G-CAA)--- --------GC GA-AGCAUUU GAUCGAAGCC |CGAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )A~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS A.butzleri 4759 bp RNA RNA 11-JAN-191 DEFINITION Arcobacter butzleri. ACCESSION No information KEYWORDS No information. SOURCE Arcobacter butzleri. ORGANISM Arcobacter butzleri. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X80382 LOCUS AB23SRN 832 bp DNA BCT 22-MAR-1995 DEFINITION A.butzlerii gene for 23S ribosomal RNA (partial). ACCESSION X80382 KEYWORDS 23S ribosomal RNA. SOURCE Arcobacter butzleri. ORGANISM Arcobacter butzleri Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic/microaerophilic, motile, helical/vibrioid bacteria. REFERENCE 1 (bases 1 to 832) AUTHORS Bastyns,K., Chapelli,S., Vandamme,P., Goossens,H. and De Wacheter,R. TITLE Species-specific detection of campylobacters important in veterinary medicine by PCR amplification of 23S rDNA areas JOURNAL Syst. Appl. Microbiol. 17, 563-568 (1994) REFERENCE 2 (bases 1 to 832) AUTHORS Bastyns,K. TITLE Direct Submission JOURNAL Submitted (18-JUL-1994) to the EMBL/GenBank/DDBJ databases. K. Bastyns, University of Antwerpen (UIA), Dept Biochemie, Building T, 2610 Wilrijk, BELGIUM COMMENT NCBI gi: 735910 FEATURES Location/Qualifiers source 1..832 /organism="Arcobacter butzlerii" /strain="LMG 10828T" rRNA <1..>832 /note="Positions 1 and 832 of the partial 23S rDNA fragment correspond to position 1076 and 1909 in the Escherichia coli 23S rDNA gene" /product="23S ribosomal RNA" BASE COUNT 244 a 161 c 228 g 198 t 1 others ORIGIN BASE COUNT 244 a 161 c 228 g 198 t 3928 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ 1201 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 1381 ~~~~~~~~~) ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|~~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(GUAAcA )GC|UCACUG GU-----CUA GU-GAU-UC- -UGC|GCGGA AAAU-AUAA- 1861 CGGGGCU-AA GAUGU-A|C| ACCGAAGCU| UUAG|auuca au-----(uu uua------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --auugagu- GG-UAGGAGA G|-----CGU 2221 U-CUA-UU-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- -CA-GCGU-A 2341 GAAGAUG-U- A-CC(GGUAA -)GGA--GCG UUGG|AGCGG A-UAGAAGUG AGCAUGC-AG 2401 GC|AUG-AGU A--GCGAUAA UUGAGG(UGA GAAU)CCUCA A|CGCC-GAA AACCCAAGGU 2461 UUCCUA-CGC GAUG-(CUCG U)CA|U-CGU AGGGUUAGU| CGG|G-ACCU AAGUCGAGUC 2521 C(GAAA)-G- GGGU-AGACG AUGG-CAAAU UGA-(UU-AA UAUU)U-CAA U|AC|ca-a- 2581 ca-uau-aag ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -----cgcga u------gug g--gga-cgc auagaguua- aucg-a-|gg u-cac(ug-- 2761 auggaa-ua- --)gu-ggcu -|cgaa---- ---------- ---ggac-gu aggc------ 2821 --uguua-ag uagg(ca-aa -u-)cc|g-- cuuaacauua ---------- ggcc-gagau 2881 cuu-acag|g cu-|------ -cuugacacu c(-uucg--) gaggagaugg ------agaa 2941 --ucgau-ga uacu-guc-| gugccaagaa a-agccac-u aaguuu---- ------au-u 3001 -auaug--uu g|C|CCGUAC CGUAAACC(G ACACA)GG|U GG-GUGGGA- U-(GAGUA)U 3061 NCUAAGGCGC ||GUGGAAGA ACCCUGGUU- ---------- ----AAGGAA CUCUGCAAAC 3121 UAGCACCGUA UC(-UUCG)G UAUAAGGUGU |GCCU---ac -uuuugua-- ----u-auga 3181 a(-cuugc)u ucaaaaa--- ---gcgaaa- g---agg-u| u(gCA)ACAA AGAGUCC-CU 3241 CC|CGACU-- ---GU(UUAC CAAAA)ACAC AGCACUUUG| CUAACAC(GU AA------)G 3301 UGGAUGU-AU AAGGUGUGA- CGCCUGCCCG GU|GCUC-GA A-GGUUAACU GAUGAUGUCA 3361 GC-------- (G-CAA)--- --------GC GA-AGCAUUU GAUUGAAGCC |CGAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )A~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS A.nitrofig 4759 bp RNA RNA 11-JAN-191 DEFINITION Arcobacter nitrofigilis. ACCESSION No information KEYWORDS No information. SOURCE Arcobacter nitrofigilis. ORGANISM Arcobacter nitrofigilis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X80384 LOCUS AN23SRNA 785 bp DNA BCT 22-MAR-1995 DEFINITION A.nitrofigilis gene for 23S ribosomal RNA (partial). ACCESSION X80384 KEYWORDS 23S ribosomal RNA. SOURCE Arcobacter nitrofigilis. ORGANISM Arcobacter nitrofigilis Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic/microaerophilic, motile, helical/vibrioid bacteria. REFERENCE 1 (bases 1 to 785) AUTHORS Bastyns,K., Chapelli,S., Vandamme,P., Goossens,H. and De Wacheter,R. TITLE Species-specific detection of campylobacters important in veterinary medicine by PCR amplification of 23S rDNA areas JOURNAL Syst. Appl. Microbiol. 17, 563-568 (1994) REFERENCE 2 (bases 1 to 785) AUTHORS Bastyns,K. TITLE Direct Submission JOURNAL Submitted (18-JUL-1994) to the EMBL/GenBank/DDBJ databases. K. Bastyns, University of Antwerpen (UIA), Dept Biochemie, Building T, 2610 Wilrijk, BELGIUM COMMENT NCBI gi: 735915 FEATURES Location/Qualifiers source 1..785 /organism="Arcobacter nitrofigilis" /strain="LMG7604T" rRNA <1..>785 /note="Positions 1 and 785 of the partial 23S rDNA fragment correspond to position 1131 and 1916 in the Escherichia coli 23S rDNA gene" /product="23S ribosomal RNA" BASE COUNT 227 a 157 c 213 g 188 t ORIGIN BASE COUNT 227 a 157 c 213 g 188 t 3974 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ 1201 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 1381 ~~~~~~~~~) ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|~~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~UGU-A|C| ACCGAAGCU| UUAG|acuug ua-----(cu ug-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --uacaagu- GG-UAGGAGA G|-----CGU 2221 U-CUA-UU-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- -CA-GCGU-U 2341 GAAGGUA-U- A-CC(GACGA -)GGA--GUG CUGG|AGCGG A-UAGAAGUG AGCAUGC-AG 2401 GC|AUG-AGU A--GCGAUAA UUGAGG(UGA GAAU)CCUCA A|CGCC-GAA AACCCAAGGU 2461 UUCCUA-CGC GAUG-(CUCG U)CA|U-CGU AGGGUUAGU| CGG|G-ACCU AAGUCGAGUC 2521 C(GAAA)-G- GGGU-AGACG AUGG-CAAAU UGA-(UU-AA UAUU)U-CAA U|AC|ca-a- 2581 ca-aau-aag ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -----cgcga u------gug g--gga-cgc auagaguua- aucg-a-|gg u-cac(ug-- 2761 auggaa-ua- --)gu-ggcu -|cgaa---- ---------- ---ggau-gu aggu------ 2821 --ugaua-gu uagg(ca-aa -u-)cc|g-- gcuaucacua ---------- gacc-gagau 2881 cuu-acag|g cu-|------ -guugcgauu c(-uucg--) gaaucaauuc ------agaa 2941 --ucgau-ga uacu-guc-| gugccaagaa a-agccac-u aaguau---- ------au-u 3001 -auuug--uu g|C|CCGUAC CGUAAACC(G ACACA)GG|U GG-GUGGGA- U-(GAGUA)U 3061 UCUAAGGCGC ||GUGGAAGA ACCCUGGUU- ---------- ----AAGGAA CUCUGCAAAC 3121 UAGCACCGUA UC(-UUCG)G UAUAAGGUGU |GCCU---ac -uuuggua-- ----u-agag 3181 a(-uuuac)u cucaaaa--- ---gcuaaa- g---agg-u| u(gCA)ACAA AGAGUCC-CU 3241 CC|CGACU-- ---GU(UUAC CAAAA)ACAC AGCACUUUG| CUAACUC(GC AA------)G 3301 AGGAUGU-AU AAGGUGUGA- CGCCUGCCCG GU|GCUC-GA A-GGUUAACU GAUGAUGUCA 3361 GC-------- (G-CAA)--- --------GC GA-AGCAUUU GAUUGAAGCC |CGAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( U~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS Cam.sp. 4759 bp RNA RNA 12-MAR-1997 DEFINITION Campylobacter sp.; 23S ribosomal RNA; 23S rRNA gene. ACCESSION Y11766 KEYWORDS 23S ribosomal RNA; 23S rRNA gene. SOURCE Campylobacter sp. ORGANISM Campylobacter sp. REFERENCE 1 (bases 1 to 2661) AUTHORS Linton,D., Hurtado,A., Clewley,J.P., Chart,H., Owen,R.J. and Stanley,J. TITLE A Campylobacter group from fresh water with enlarged flagellin genes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2661) AUTHORS Stanley,J. TITLE Direct Submission JOURNAL Submitted (11-MAR-1997) J. Stanley, Central Public Health Laboratory, Virus Reference Division, 61 Colindale Avenue, NW9 5HT, UK STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: Y11766 BASE COUNT 781 a 526 c 741 g 613 t 2098 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ AGAUU|UCCG AAUGGG(GCA 241 A)CCC|aaug uaua(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----caga)u auacauu-ac cu-------( 481 ---auau--- --)------- -a-g--gaG- C-GAAC|GA- GGGGAAUU|G A(AACA)UCU 541 UAGUA-CCCU CAGGAAAAGA AAUC(-AAUA --)GAGAU|U GC-GUCAGUA GC(GGCGA)G 601 CGA-AAG-CG CA-AGA-GGG CAAAcccagu -g-------- -----(cuug -)-------- 661 -----cacug gggguuguag gacu------ ---------- ---------- ---------- 721 ------gcaa ugugcaagag gugaguuu-a gcaGAAC-au u-c(u-ggaa a)g-uauagc 781 |c(aua)gaG GG(UGAUAGU )CCCGU-Aug c-gaaaaaca aaccuuagcu agca------ 841 ---------- --------gu auccu---GA GUAGGGCGGG A(CACGAG-A AA)UCCUGUC 901 UGAAGCU-GG G-UC(GACCA C)GA-UCC-A ACCCUAA--- -AUACUAAUA CCAGAUCGAU 961 AGUG-CAC-A AGUACC(GUG A)-GGGA-AA GGUGAAAA-G AACUGA(GGU GA-)UCAGA- 1021 -GUGAAA-UA GAACCUGAAA CCAU-UUGCU UACAA-U-CA UUCAGAGCAC -UAU-GUA-- 1081 --------(- ---gcaa--) ---------- --UACA-GUG UGAUGGACUG CCU(UUU-GC 1141 AU|A)AUGA| -GCCUGCGAG UUGU-GGUG- UCUGGC-AAG GUUAAGC--( --AAAC)--G 1201 C-GAAGCCGU AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC GC-------- ---------- 1261 ---------- ------U-UA G-UCAGAUGC UGCA-GACCC GAAAC-GAA- GUGA-UCUAU 1321 CCAUGAG|CA AGUUGAAGCU AGUG(UAAG) AA-CUAGUGG AGGACUGAAC C-CAUAGGC( 1381 -GUUGAAAA) GCCCC|GGGA U-GAC-UUGU GGAUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 UCGUGAUAGC UGGUUCUCUC CGAAAUAUAU (-UUAG)GUA UAGC|-GUUG UGUCG---U| 1501 -AAU|AUAAG G|GGGUAG|A GC-ACUGA-A UGGGCUA-GG |-GCAU-(ac acc)AAUGUA 1561 CCAAACCCUA -UCAAACUCC GAA-UA-|CC U-U-A-U--- AUGU---AA| UCA-CAGCAG 1621 UCAGGC--GG C-GAGU(GAU AAA)AUCCGU -CGUC-AAGA GGG(-AAACA A-)CCCAGAC 1681 UACCAGCUAA G-GU|CCCU- AAAUC-UUAC -U-UAA-GUG ------GAAA ACGAUGUG-A 1741 AGUUACUUA- AACAACCAGG AGGUUGGC(U UAGAAGCA)G CCAU-CCU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG GU-----CUA GU-GAU-UU- -UGC|GCGGA AAAU-AUAA- 1861 CGGGGCU-AA AGUAA-G|U| ACCGAAGCU| GUAG|acuug a------(cu uug------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ---ucaagu- GG-UAGGAGA G|-----CGU 2221 U-CUA-UU-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-GCGU-C 2341 GAAGGUA-U- A-CC(GGUAA -)GGA--GUG CUGG|AGCGA A-UAGAAGUG AGCAUGC-AG 2401 GC|AUG-AGU A--GCGAUAA UUAAUG(UGA GAAU)CAUUA A|CGCC-GUA AACCCAAGGU 2461 UUCCUA-CGC GAUG-(CUCG U)CA|U-CGU AGGGUUAGU| CGG|G-UCCU AAGUCGAGUC 2521 C(GAAA)-G- GGGU-AGACG AUGG-CAAAU UGG-(UU-AA UAUU)C-CAA U|AC|CA-A- 2581 CA-UUA-GUG ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -----ugcga u------gga a--gga-cgc uuagggcua- aggg-g-|gc u-agc(gg-- 2761 auggaa-gu- --)gc-uagu -|cuaa---- ---------- ---gguc-gu aggu------ 2821 --gcuua-ua cagg(ca-aa -u-)cc|g-- uauaagaaua ---------- cacc-gagaa 2881 cug-aaag|g cu-|------ -uuuugaagu c(-uucg--) gauggauaga ------agaa 2941 --ccccu-ga ugcc-guc-| gagccaagaa a-aguuuc-u aaguuu---- ------ag-c 3001 -uaaug--uu g|C|CCGUAC CGUAAACC(G ACACA)GG|U GG-GUGGGA- U-(GAGUA)U 3061 UCUAAGGCGC ||GUGGAAGA ACUCUCUUU- ---------- ----AAGGAA CUCUGCAAAA 3121 UAGCACCGUA UC(-UUCG)G UAUAAGGUGU |GGUU---cg -cuucgua-- ----uu-agg 3181 a(-uuuac)u ccgaaa---- ---gcgaag- a---AAC-U| U(ACA)ACAA AGAGUCC-CU 3241 CC|CGACU-- ---GU(UUAC CAAAA)ACAC AGCACUCUG| CUAACUC(GU AA------)G 3301 AGGAUGU-AU AGGGUGUGA- CGCCUGCCCG GU|GCUC-GA A-GGUUAAUU GAUGGGGUUA 3361 GC-------- (a-uua)--- --------GC GA-AGCUCUU GAUCGAAGCC |CGAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGU(U 3481 AAAU)ACCGA C|CUGCAUGA AUGGCGUAAC GA-GAUGGGA GCUGUCUCAA AGAGGGAUCC 3541 A|GUGAAAUU |GUAGUGG-A GG(UGAAAAU U)CCUCCUAC CCGCGGC-AA GACGGAAAGA 3601 CCCCGUGG|A CCU-UUACUA C|AGCUUGAC ACU|GCUAUU UGGAUAAGAA UGUGCAGGAU 3661 AGGUGGGAGG CUUUGAGU-- AUAUGAC(GC CA)GUUGUAU AUGAGCCAUU -G-UUGAGAU 3721 ACCACU|CUU U-CUUAUUUG GGU-AGCUAA -CCAGCU--- -UGAG(--UU -AUC)-CUCA 3781 AGUGG-GACA AUGUCUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|GCCUC C(CAA-AUAA 3841 UAAC)GGAGG C|U|U|ACAA AGGUUGGC|U CAGAACGG(U UGGAAA)UCG UUCGUA-GA| 3901 GU(A|UAAAG )GUAUAAGCC AGCUUAACUG CAAGAC(AUA CAA)GUCAAG CAGAGAC(GA 3961 AA)GU-CGGU |CUUAGUGAU CCGGUGGUUC UG(UGUGGA) AGG|GCCAUC GCUCAAA|GG 4021 AUAAAAGGUA CCC|CGGG|G AUAACAG|GC UGA--UCUCC CCCAAGA(G- CUC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GGAG 4141 C---A)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|CG-UAA 4261 GAAGAUU|GA -|AGAGAUU- UGA------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGUUGA|ACA AACCACUGGU GUAGCUGU|U GUUCU(GC-C A-)AGAGCA- UCGCAGCGUA 4381 GCU-AAGUUU GGAAAGGAUA AACGCU(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~-~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS Cam.hyoile 4759 bp RNA RNA 12-MAR-1997 DEFINITION Campylobacter hyoilei.; 23S ribosomal RNA; 23S rRNA gene. ACCESSION Y11765 KEYWORDS 23S ribosomal RNA; 23S rRNA gene. SOURCE Campylobacter hyoilei. ORGANISM Campylobacter hyoilei. REFERENCE 1 (bases 1 to 2809) AUTHORS Linton,D., Hurtado,A., Clewley,J.P., Chart,H., Owen,R.J. and Stanley,J. TITLE A Campylobacter group from fresh water with enlarged flagellin genes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2809) AUTHORS Stanley,J. TITLE Direct Submission JOURNAL Submitted (11-MAR-1997) J. Stanley, Central Public Health Laboratory, Virus Reference Division, 61 Colindale Avenue, NW9 5HT, UK STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: Y11765 BASE COUNT 841 a 536 c 764 g 665 t 1953 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ AGAUU|UCCG AAUGGG(GCA 241 A)CCC|AAUG UAUA(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----caga)u auacauu-AC CU-------( 481 ---auau--- --)------- -A-G--GAG- C-GAAC|GA- GGGGAAUU|G A(AACA)UCU 541 UAGUA-CCCU CAGGAAAAGA AAUC(-AAUA --)GAGAU|U GC-GUCAGUA GC(GGCGA)G 601 CGA-AAG-CG CA-AGA-GGG CAAACCCAGU -g-------- -----(cuug -)-------- 661 -----cacug gggguuguag gacu------ ---------- ---------- ---------- 721 ------gcaa ugugcaagag gugaguuu-a gcaGAAC-au u-c(u-ggaa a)g-uauagc 781 |c(aua)gaG GG(UGAUAGU )CCCGU-AUG C-gaaaaaca aaccuuagcu agca------ 841 ---------- --------gu auccu---GA GUAGGGCGGG A(CACGAG-A AA)UCCUGUC 901 UGAAGCU-GG G-UC(GACCA C)GA-UCC-A ACCCUAA--- -AUACUAAUA CCAGAUCGAU 961 AGUG-CAC-A AGUACC(GUG A)-GGGA-AA GGUGAAAA-G AACUGA(GGU GA-)UCAGA- 1021 -GUGAAA-UA GAACCUGAAA CCAU-UUGCU UACAA-U-CA UUCAGAGCNC -UAU-GUA-- 1081 --------(- ---gcaa--) ---------- --UACA-GUG UGAUGGACUG CCU(UUU-GC 1141 AU|A)AUGA| -GCCUGCGAG UUGU-GGUG- UCUGGC-AAG GUUAAGC--( --AAAC)--G 1201 C-GAAGCCGU AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC GC-------- ---------- 1261 ---------- ------U-UA GGUCAGAUGC UGCA-GACCC GAAAC-GAA- GUGA-UCUAU 1321 CCAUGAG|CA AGUUGAAGCU AGUG(UAAG) AA-CUAGUGG AGGACUGAAC C-CAUAGGC( 1381 -GUUGAAAA) GCCCC|GGG- AUGAC-UUGU GGAUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 UCGUGAUAGC UGGUUCUCUC CGAAAUAUAU (-UUAG)GUA UAGC|-GUUG UGUCG---U| 1501 -AAU|AUAAG G|GGGUAn|A GC-ACUGA-A UGGGCUA-GG |-GCAU-(ac acc)AAUGUA 1561 CCAAACCCUA -UCAAACUCC GAA-UA-|CC U-U-A-U--- AUGU---AA| UCA-CAGCAG 1621 UCAGGC--GG C-GAGU(GAU AAA)AUCCGU -CGUC-AAGA GGG(-AAACA A-)CCCAGAC 1681 UACCAGCUAA G-GU|CCCU- AAAUC-UUAC -U-UAA-GUG ------GAAA ACGAUGUG-A 1741 AGUUACUUA- AACAACCAGG AGGUUGGC(U UAGAAGCA)G CCAU-CCU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG GU-----CUA GU-GAU-UU- -UGC|GCGGA AAAU-AUAA- 1861 CGGGGCU-AA AGUAA-G|U| ACCGAAGCU| GUAG|acuug cgcacaa(cu uagauuauuu 1921 aaguuuagaa ua-ugagaaa cuaaguuaua uguuuaguua uauuuuuacu gauuuuuaua 1981 gaguaaagau agaaauaaaa cuuaguaaaa ucaguaaaaa uauucuuaga cuaaag---- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- -uuaaguagu uuaag)-uug ugugcaagu- GG-UAGGAGA G|-----CGU 2221 U-CUA-UU-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-GCGC-C 2341 GAAGGUA-U- A-CC(GGUAA -)GGA--GUG CUGG|AGCGA A-UAGAAGUG AGCAUGC-AG 2401 GC|AUG-AGU A--GCGAUAA UUAAUG(UGA GAAU)CAUUA A|CGCC-GUA AACCCAAGGU 2461 UUCCUA-CGC GAUG-(CUCG U)CA|U-CGU AGGGUUAGU| CGG|G-UCCU AAGUCGAGUC 2521 C(GAAA)-G- GGGU-AGACG AUGG-CAAAU UGG-(UU-AA UAUU)C-CAA U|AC|ca-a- 2581 ca-uua-gug ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -----ugcga u------gga a--gga-cgc uuagggcua- aggg-g-|gc u-agc(gg-- 2761 auggaa-gu- --)gc-uagu -|cuaa---- ---------- ---gguc-gu agga------ 2821 --gguua-ua cagg(ca-aa -u-)cc|g-- uauaacaaua ---------- cucc-gagaa 2881 cug-aaag|g cu-|------ -uuuugaagn c(-uucg--) gauggauaga ------agaa 2941 --ccccu-ga ugcc-guc-| gagccaagaa a-aguuuc-u aaguuu---- ------ag-c 3001 -uaaug--uu g|c|CCGUAC CGUAAACC(G ACACA)GG|U GG-GUGGGA- U-(GAGUA)U 3061 UCUAAGGCGC ||GUGGAAGA ACUCUCUUU- ---------- ----AAGGAA CUCUGCAAAA 3121 UAGCACCGUA UC(-UUCG)G UAUAAGGUGU |GGUU---cg -cuucgua-- ----uu-agg 3181 a(-uuuac)u ccgaaa---- ---gcgaag- a---AAC-U| U(ACA)ACAA AGAGUCC-CU 3241 CC|CGACU-- ---GU(UUAC CAAAA)ACAC AGCACUCUG| CUAACUC(GU AA------)G 3301 AGGAUGU-AU AGGGUGUGA- CGCCUGCCCG GU|GCUC-GA A-GGUUAAUU GAUGGGGUUA 3361 GC-------- (A-UUA)--- --------GC GA-AGCUCUU GAUCGAAGCC |CGAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGU(U 3481 AAAU)ACCGA C|CUGCAUGA AUGGCGUAAC GA-GAUGGGA GCUGUCUCAA AGAGGGAUCC 3541 A|GUGAAAUU |GUAGUGG-A GG(UGAAAAU U)CCUCCUAC CCGCGGC-AA GACGGAAAGA 3601 CCCCGUGG|A CCU-UUACUA C|AGCUUGAC ACU|GCUAUU UGGAUAAGAA UGUGCAGGAU 3661 AGGUGGGAGG CUUUGAGU-- AUAUGAC(GC CA)GUUGUAU AUGAGCCAUU -G-UUGAGAU 3721 ACCACU|CUU U-CUUAUUUG GGU-AGCUAA -CCAGCU--- -UGAG(--UU -AUC)-CUCA 3781 AGUGG-GACA AUGUCUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|GCCUC C(CAA-AUAA 3841 UAAC)GGAGG C|U|U|ACAA AGGUUGGC|U CAGAACGG(U UGGAAA)UCG UUCGUA-GA| 3901 GU(A|UAAAG )GUAUAAGCC AGCUUAACUG CAAGAC(AUA CAA)GUCAAG CAGAGAC(GA 3961 AA)GU-CGGU |CUUAGUGAU CCGGUGGUUC UG(UGUGGA) AGG|GCCAUC GCUCAAA|GG 4021 AUAAAAGGUA CCC|CGGG|G AUAACAG|GC UGA--UCUCC CCCAAGA(G- CUC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GGAG 4141 C---A)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|CG-UAA 4261 GAAGAUU|GA -|AGAGAUU- UGA------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGUUGA|ACA AACCACUGGU GUAGCUGU|U GUUCU(GC-C A-)AGAGCA- UCGCAGCGUA 4381 GCU-AAGUUU GGAAAGGAUA AACGC~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~-~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~- 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.jejuni.1 4759 bp RNA RNA 11-JAN-191 DEFINITION Campylobacter jejuni. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter jejuni. ORGANISM Campylobacter jejuni. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X66616 ID CJ23SR standard; DNA; PRO; 938 BP. XX AC X66616; XX DT 22-MAR-1994 (Rel. 39, Created) DT 22-MAR-1994 (Rel. 39, Last updated, Version 2) XX DE C.jejuni 23S rRNA XX KW 23S ribosomal RNA; ribosomal RNA. XX OS Campylobacter jejuni OC Prokaryota; Bacteria; Gracilicutes; Scotobacteria; OC Aerobic/microaerophilic, motile, helical/vibrioid bacteria. XX RN [1] RP 1-938 RA Van Camp G.; RT ; RL Submitted (04-JUN-1992) to the EMBL/GenBank/DDBJ databases. RL G. Van Camp, University of Antwerp (UIA), Dept of Biochemistry, RL Universiteitsplein 1, B-2610 Antwerpen, BELGIUM XX RN [2] RP 1-938 RA Van Camp G., Chapelle S., De Wachter R.; RT "Amplification and sequencing of variable regions in bacterial 23S RT ribosomal RNA genes with conserved primer sequences"; RL Curr. Microbiol. 27:147-151(1993). XX FH Key Location/Qualifiers FH FT source 1..938 FT /organism="Campylobacter jejuni" FT /strain="ATCC33250" FT rRNA 1..938 FT /partial FT /gene="23S rRNA" XX SQ Sequence 938 BP; 285 A; 159 C; 244 G; 246 T; 4 other; BASE COUNT 285 a 159 c 244 g 246 t 3825 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ 1201 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 1381 ~~~~~~~~~) ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|~~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~UAAUA )GC|UCACUG GU-----CUA GU-GAU-UU- -UGC|GCGGA AAAU-AUAA- 1861 CGGGGCU-AA AGUAA-G|U| ACCGAAGCU| GUAG|acuug cgcacaa(cu uagauuauuu 1921 aaguuuagaa ua-ugagaaa cuaaguuaua u--------- ---uuuuacu gauuuuuaua 1981 gaguaaagau agaaauaaaa cuuaguaaaa ucaguaaaaa uauucuuagg cuaaag---- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- -uuaaguagu uuaag)-uug ugugcaagu- GG-UAGGAGA G|-----CGU 2221 U-CUA-Un-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-GCGU-C 2341 GAAGGUA-U- A-CC(GGUAA -)GGA--GUG CUGG|AGCGA A-UAGAAGUG AGCAUGC-AG 2401 GC|AUG-AGU A--GCGAUAA UUAAUG(UGA GAAU)CAUUA A|CGCC-GUA AACCCAAGGU 2461 UUCCUA-CGC GAUG-(CUCG U)CA|U-CGU AGGGUUAGU| CGG|G-UCCU AAGUCGAGUC 2521 C(NNAA)-G- GG-U-AGNCG AUGG-CAAAU UGG-(UU-AA UAUU)C-CAA U|AC|ca-a- 2581 ca-uua-gug ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -----ugcga u------gga a--gga-cgc uuagggcua- aggg-g-|gc u-agc(gg-- 2761 auggaa-gu- --)gc-uagu -|cuaa---- ---------- ---gguc-gu agga------ 2821 --gguua-ua cagg(ca-aa -u-)cc|g-- uauaacaaua ---------- cucc-gagaa 2881 cug-aaag|g cu-|------ -uuuugaagu c(-uucg--) gauggauaga ------agaa 2941 --ccccu-ga ugcc-guc-| gagccaagaa a-aguuuc-u aaguuu---- ------ag-c 3001 -uaaug--uu g|C|CCGUAC CguAAACC(G ACACA)GG|U GG-GUGGGA- U-(GAGUA)U 3061 UCUAAGGCGC ||GUGGAAGA ACUCUCUUU- ---------- ----AAGGAA CUCUGCAAAA 3121 UAGCACCGUA UC(-UUCG)G UAUAAGGUGU |GGUU---ag -cuuuguauu a-------gg 3181 a(-uuuac)u ccgaaa---- ---gcaagg- a---AAC-U| U(ACA)ACAA AGAGUCC-CU 3241 CC|CGACU-- ---GU(UUAC CAAAA)ACAC AGCACUCUG| CUAACUC(GU AA------)G 3301 AGGAUGU-AU AGGGUGUGA- CGCCUGCCCG GU|GCUC-GA A-GGUUAAUU GAUGGGGUUA 3361 GC-------- (A-UUA)--- --------GC GA-AGCUCUU GAUCGAAGCC |CG~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.jejuni.2 4759 bp RNA RNA 11-JAN-191 DEFINITION Campylobacter jejuni ssp.jejuni. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter jejuni ssp.jejuni. ORGANISM Campylobacter jejuni ssp.jejuni. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X67765 LOCUS CJJ23S 807 bp DNA BCT 13-DEC-1993 DEFINITION C.jejuni ssp.jejuni (LMG 6629) 23S rRNA gene ACCESSION X67765 KEYWORDS 23S ribosomal RNA; ribosomal RNA. SOURCE Campylobacter jejuni ORGANISM Campylobacter jejuni Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic/microaerophilic, motile, helical/vibrioid bacteria. REFERENCE 1 (bases 1 to 807) AUTHORS Van Camp,G. TITLE Direct Submission JOURNAL Submitted (19-OCT-1992) to the EMBL/GenBank/DDBJ databases. G. Van Camp, University of Antwerp (UIA), Dept of Biochemistry, Universiteitsplein 1, B-2610 Antwerpen, BELGIUM STANDARD full automatic REFERENCE 2 (bases 1 to 807) AUTHORS Van Camp,G., Van de Peer,Y., Neefs,J.M., Vandamme,P. and De Wachter,R. TITLE Presence of internal transcribed spacers in the 16S and 23S ribosomal RNA genes of Campylobacter JOURNAL Syst. Appl. Microbiol. 16, 361-368 (1993) STANDARD full automatic FEATURES Location/Qualifiers source 1..807 /organism="Campylobacter jejuni" /strain="LMG 6629" /sub_strain="jejuni" rRNA <1..>807 /product="23S ribosomal RNA" BASE COUNT 237 a 147 c 216 g 199 t 8 others ORIGIN BASE COUNT 237 a 147 c 216 g 199 t 3960 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ 1201 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 1381 ~~~~~~~~~) ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|~~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~AA)A|GAA 1801 ANC(GUAAUA )GC|UCACUG GU-----CUA GU-GAU-UU- -UGC|GCGGA AAAU-AUAA- 1861 CGGGGCU-AA AGUAA-G|U| ACCGAAGCU| GUAG|acuua g------(uu ua-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ---cuaagu- GG-UAGGAGA G|-----CGU 2221 U-CUA-UU-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-GCGU-C 2341 GAAGGUA-U- A-CC(GGUAA -)GGA--GUG CUGG|AGCGA A-UAGAAGUG AGCAUGC-AG 2401 GC|AUG-AGU A--GCGAUAA UUAAUG(UGA GAAU)CAUUA A|CNCC-GUA AACCCAAGNU 2461 UUCCUA-CNC NAUG-(CUCG U)CA|U-CGU AGGGUUAGU| CGG|G-UCCU AANUCGAGUC 2521 C(GAAA)-n- GG-U-AGACN AUGG-CAAAU UGG-(UU-AA UAUU)C-CAA U|AC|ca-a- 2581 ca-uua-gug ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -----ugcga u------gga a--gga-cgc uuagggcua- aggg-g-|gc u-agc(gg-- 2761 auggaa-gu- --)gc-uagu -|cuaa---- ---------- ---gguc-gu agga------ 2821 --gguua-ua cagg(ca-aa -u-)cc|g-- uauaacaaua ---------- cucc-gagaa 2881 cug-aaag|g cu-|------ -uuuugaagu c(-uucg--) gauggauaga ------agaa 2941 --ccccu-ga ugcc-guc-| gagccaagaa a-aguuuc-u aaguuu---- ------ag-c 3001 -uaaug--uu g|C|CCGUAC CGUAAACC(G ACACA)GG|U GG-GUGGGA- U-(GAGUA)U 3061 UCUAAGGCGC ||GUGGAAGA ACUCUCUUU- ---------- ----AAGGAA CUCUGCAAAA 3121 UAGCACCGUA UC(-UUCG)G UAUAAGGUGU |GGUU---ag -cuuuguauu a-------gg 3181 a(-uuuac)u ccgaaa---- ---gcaagg- a---AAC-U| U(ACA)ACAA AGAGUCC-CU 3241 CC|CGACU-- ---GU(UUAC CAAAA)ACAC AGCACUCUG| CUAACUC(GU AA------)G 3301 AGGAUGU-AU AGGGUGUGA- CGCCUGCCCG GU|GCUC-GA A-GGUUAAUU GAUGGGGUUA 3361 GC-------- (A-UUA)--- --------GC GA-AGCUCUU GAUCGAAG~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.jejuni.3 4759 bp RNA RNA 11-JAN-191 DEFINITION Campylobacter jejuni. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter jejuni. ORGANISM Campylobacter jejuni. REFERENCE 1 (bases 1 to 2809) AUTHORS No information TITLE 3' end is noted wrong in GB entry. JOURNAL 12 more nucs. added at this end. STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: Z29326 From vlchan@utcc.utoronto.ca Tue Aug 3 15:42:28 1993 Received: from boulder.Colorado.EDU by savant.colorado.edu with SMTP id AA01161 (5.65c/IDA-1.4.4 for ); Tue, 3 Aug 1993 15:42:27 -0600 Received: from gpu.utcc.utoronto.ca by boulder.Colorado.EDU with SMTP id AA13542 (5.65c/IDA-1.4.4 for ); Tue, 3 Aug 1993 15:42:03 -0600 Received: by gpu.utcc.utoronto.ca id <18698>; Tue, 3 Aug 1993 17:41:49 -0400 From: "V.L Chan" To: rgutell@boulder.colorado.edu Subject: corrected 23s rRNA seq Message-Id: <93Aug3.174149edt.18698@gpu.utcc.utoronto.ca> Date: Tue, 3 Aug 1993 17:41:37 -0400 Status: RO LOCUS CJ16SRNA 5996 bp DNA BCT 04-MAR-1996 DEFINITION C.jejuni TGH9011(ATCC43431) gene for ribosomal RNA operon. ACCESSION Z29326 NID g440400 KEYWORDS 16S ribosomal RNA; 23S ribosomal RNA; 5S ribosomal RNA; transfer RNA-Ala; transfer RNA-Ile. SOURCE Campylobacter jejuni. ORGANISM Campylobacter jejuni Eubacteria; Proteobacteria; epsilon subdivision; Campylobacter. REFERENCE 1 (bases 1 to 5996) AUTHORS Kim,N.W., Gutell,R.R. and Chan,V.L. TITLE Complete sequences and organization of the rrnA operon from campylobacter jejuni TGH9011 (ATCC43431) JOURNAL Gene 164 (1), 101-106 (1995) MEDLINE 96060846 REFERENCE 2 (bases 1 to 5996) AUTHORS Chan,V.V. TITLE Direct Submission JOURNAL Submitted (05-JAN-1994) Chan V. V., University of Toronto, Microbiology, 150 College Street, Toronto, Ontario, Canada, M5S 1A8 FEATURES Location/Qualifiers source 1..5996 /organism="Campylobacter jejuni" /strain="TGH9011(ATCC43431)" /chromosome="genomic segment" /germline -35_signal 77..82 /citation=[1] /label=-35seq16S -10_signal 98..103 /citation=[1] /label=-10seq16S rRNA 264..1776 /evidence=experimental /gene="rrs" /citation=[1] /product="16S ribosomal RNA" tRNA 1881..1956 /evidence=experimental /standard_name="alanine tRNA" /citation=[1] /anticodon=(pos:1914..1916,aa:Ala) /product="transfer RNA-Ala (TGC)" tRNA 1965..2041 /evidence=experimental /standard_name="Isoleucine tRNA" /citation=[1] /anticodon=(pos:1999..2001,aa:Ile) /product="transfer RNA-Ile (GAT)" rRNA 2582..5471 /evidence=experimental /gene="rrl" /standard_name="large subunit rRNA" /citation=[1] /product="23S ribosomal RNA" rRNA 5717..5836 /evidence=experimental /citation=[1] /product="5S ribosomal RNA" BASE COUNT 1833 a 1082 c 1476 g 1605 t BASE COUNT 853 a 568 c 808 g 678 t 1852 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------AG GUAAGCUAC- --UAAGAGCG AAUGGUGGAU 121 G|CCUUGA|C UGGUAA|AG| GC-GAUGAAG GA|CGUA(CU AG-AC-)U|- GCG-AUAAGC 181 UACGGG|-GA GCU(G-UC-A AGA-)AGCUU UG-AUC-CGU AGAUU|UCCG AAUGGG(GCA 241 A)CCC|aaug uaua(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----gaga)u auacauu-ac cu-------( 481 ---auau--- --)------- -a-g--gAG- C-GAAC|GA- GGGGAAUU|G A(AACA)UCU 541 UAGUA-CCCU CAGGAAAAGA AAUC(-AAUA --)GAGAU|U GC-GUCAGUA GC(GGCGA)G 601 CGA-AAG-CG CA-AGA-GGG CAAAcccagu -g-------- -----(cuug -)-------- 661 -----cacug gggguuguag gacu------ ---------- ---------- ---------- 721 ------gcaa ugugcaagag guaaguuu-a gcaGAAC-au u-c(u-ggaa a)g-uauaac 781 |c(aua)gaG GG(UGAUAGU )CCCGU-Aug c-gaaaaaca aaccuuagcu agca------ 841 ---------- --------gu auccu---GA GUAGGGCGGG A(CACGAG-G AA)UCCUGUC 901 UGAAUCC-GG G-UC(GACCA C)GA-UCC-A ACCCUAA--- -AUACUAAUA CCAGAUCGAU 961 AGUG-CAC-A AGUACC(GUG A)-GGGA-AA GGUGAAAA-G AACUGA(GGU GA-)UCAGA- 1021 -GUGAAA-UA GAACCUGAAA CCAU-UUGCU UACAA-U-CA UUCAGAGCCC -UAU-GUA-- 1081 --------(- ---gcaa--) ---------- --UACA-GGG UGAUGGACUG CCU(UUU-GC 1141 AU|A)AUGA| -GCCUGCGAG UUGU-GGUG- UCUGGC-AAG GUUAAGC--( --AAAC)--G 1201 C-GAAGCCGU AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC GC-------- ---------- 1261 ---------- ------u-ua G-UCAGAUGC UGCA-GACCC GAAAC-GAA- GUGA-UCUAU 1321 CCAUGAG|CA AGUUGAAGCU AGUG(UAAG) AA-CUAGUGG AGGACUGAAC C-CAUAGGC( 1381 -GUUGAAAA) GCCCC|GGG- AUGAC-UUGU GGAUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 UCGUGAUAGC UGGUUCUCUC CGAAAUAUAU (-UUAG)GUA UAGC|-GUUG UGUCG---U| 1501 -AAU|AUAAG G|GGGUAG|A GC-ACUGA-A UGGGCUA-GG |-GCAU-(ac acc)AAUGUA 1561 CCAAACCCUA -UCAAACUCC GAA-UA-|CC U-U-A-U--- AUGU---AA| UCA-CAGCAG 1621 UCAGGC--GG C-GAGU(GAU AAA)AUCCGU -CGUC-AAGA GGG(-AAACA A-)CCCAGAC 1681 UACCAGCUAA G-GU|CCCU- AAAUC-UUAC -U-UAA-GUG ------GAAA ACGAUGUG-A 1741 AGUUACUUA- AACAACCAGG AGGUUGGC(U UAGAAGCA)G CCAU-CCU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG GU-----CUA GU-GAU-UU- -UGC|GCGGA AAAU-AUAA- 1861 CGGGGCU-AA AGUAA-G|U| ACCGAAGCU| GUAG|acuua g------(uu ua-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ---cuaagu- GG-UAGGAGA G|-----CGU 2221 U-CUA-UU-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-GCGU-C 2341 GAAGGUA-U- A-CC(GGUAA -)GGA--GUG CUGG|AGCGA A-UAGAAGUG AGCAUGC-AG 2401 GC|AUG-AGU A--GCGAUAA UUAAUG(UGA GAAU)CAUUA A|CGCC-GUA AACCCAAGGU 2461 UUCCUA-CGC GAUG-(CUCG U)CA|U-CGU AGGGUUAGU| CGG|G-UCCU AAGUCGAGUC 2521 C(GAAA)-G- GGGU-AGACG AUGG-CAAAU UGG-(UU-AA UAUU)C-CAA U|AC|ca-a- 2581 ca-uua-gug ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -----ugcga u------gga a--gga-cgc uuagggcua- aggg-g-|gc u-agc(gg-- 2761 auggaa-gu- --)gc-uagu -|cuaa---- ---------- ---gguc-gu agga------ 2821 --gguug-ua cagg(ca-aa -u-)cc|g-- uauaacaaua ---------- cucc-gagaa 2881 cug-aaag|g cu-|------ -uuuugaagu c(-uucg--) gauggauaga ------agaa 2941 --ccccu-ga ugcc-guc-| gagccaagaa a-aguuuc-u aaguuu---- ------ag-c 3001 -uaaug--uu g|C|CCGUAC CGUAAACC(G ACACA)GG|U GG-GUGGGA- U-(GAGUA)U 3061 UCUAAGGCGC ||GUGGAAGA ACUCUCUUU- ---------- ----AAGGAA CUCUGCAAAA 3121 UAGCACCGUA UC(-UUCG)G UAUAAGGUGU |GGUU---ag -cuuugua-- ----uu-agg 3181 a(-uuuac)u ccgaaa---- ---gcaagg- a---AAC-U| U(ACA)ACAA AGAGUCC-CU 3241 CC|CGACU-- ---GU(UUAC CAAAA)ACAC AGCACUCUG| CUAACUC(GU AA------)G 3301 AGGAUGU-AU AGGGUGUGA- CGCCUGCCCG GU|GCUC-GA A-GGUUAAUU GAUGGGGUUA 3361 GC-------- (A-UUA)--- --------GC GA-AGCUCUU GAUCGAAGCC |CGAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGU(U 3481 AAAU)ACCGA C|CUGCAUGA AUGGCGUAAC GA-GAUGGGA GCUGUCUCAA AGAGGGAUCC 3541 A|GUGAAAUU |GUAGUGG-A GG(UGAAAAU U)CCUCCUAC CCGCGGC-AA GACGGAAAGA 3601 CCCCGUGG|A CCU-UUACUA C|AGCUUGAC ACU|GCUACU UGGAUAAGAA UGUGCAGGAU 3661 AGGUGGGAGG CUUUGAGU-- AUAUGAC(GC CA)GUUGUAU AUGAGCCAUU -G-UUGAGAU 3721 ACCACU|CUU U-CUUAUUUG GGU-AGCUAA -CCAGCU--- -UGAG(--UU -AUC)-CUCA 3781 AGUGG-GACA AUGUCUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|GCCUC C(CAA-AUAA 3841 UAAC)GGAGG C|U|U|ACAA AGGUUGGC|U CAGAACGG(U UGGAAA)UCG UUCGUA-GA| 3901 GU(A|UAAAG )GUAUAAGCC AGCUUAACUG CAAGAC(AUA CAA)GUCAAG CAGAGAC(GA 3961 AA)GU-CGGU |CUUAGUGAU CCGGUGGUUC UG(UGUGGA) AGG|GCCAUC GCUCAAA|GG 4021 AUAAAAGGUA CCC|CGGG|G AUAACAG|GC UGA--UCUCC CCCAAGA(G- CUC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GGAG 4141 C---A)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|CG-UAA 4261 GAAGAUU|GA -|AGAGAUU- UGA------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGUUGA|ACA AACCACUGGU GUAGCUGU|U GUUCU(GC-C A-)AGAGCA- UCGCAGCGUA 4381 GCU-AAGUUU GGAAAGGAUA AACGCU(GAA AGCAUCUA)A GCGUGAAGCC AACUCU|AAG 4441 AUGAAUCUUC U|CU|----- -(------)- --------A- -AGC|-UC|U CUAG-(AAGA 4501 CU-A)CUAGU -UUGAUAG|G CUGG|GUGUG -UAAUGGAU- -(GAAA-)-- GUCCU|UU-A 4561 GCUG|A|CCA GUACUAAUA- GAGCGUUUG| GCUUAU-CUU U-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.jejuni.4 4759 bp RNA RNA 11-JAN-191 DEFINITION Campylobacter jejuni ssp.jejuni. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter jejuni ssp.jejuni. ORGANISM Campylobacter jejuni ssp.jejuni. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X67767 LOCUS CJJ6444 802 bp DNA BCT 13-DEC-1993 DEFINITION C.jejuni ssp.jejuni (LMG 6444) 23S rRNA gene ACCESSION X67767 KEYWORDS 23S ribosomal RNA; ribosomal RNA. SOURCE Campylobacter jejuni ORGANISM Campylobacter jejuni Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic/microaerophilic, motile, helical/vibrioid bacteria. REFERENCE 1 (bases 1 to 802) AUTHORS Van Camp,G. TITLE Direct Submission JOURNAL Submitted (19-OCT-1992) to the EMBL/GenBank/DDBJ databases. G. Van Camp, University of Antwerp (UIA), Dept of Biochemistry, Universiteitsplein 1, B-2610 Antwerpen, BELGIUM STANDARD full automatic REFERENCE 2 (bases 1 to 802) AUTHORS Van Camp,G., Van de Peer,Y., Neefs,J.M., Vandamme,P. and De Wachter,R. TITLE Presence of internal transcribed spacers in the 16S and 23S ribosomal RNA genes of Campylobacter JOURNAL Syst. Appl. Microbiol. 16, 361-368 (1993) STANDARD full automatic FEATURES Location/Qualifiers source 1..802 /organism="Campylobacter jejuni" /strain="LMG 6444" /sub_strain="jejuni" rRNA <1..>802 /product="23S ribosomal RNA" BASE COUNT 232 a 147 c 213 g 199 t 11 others ORIGIN BASE COUNT 232 a 147 c 213 g 199 t 3968 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ 1201 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 1381 ~~~~~~~~~) ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|~~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~GC(GUAAUA )GC|UCACUG GU-----CUA GU-GAU-UU- -UGC|GCGGA AAAU-AUAA- 1861 CGGGGCU-AA AGUAA-G|U| ACCGAAGCU| GUAG|acuua g------(uu ua-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ---cuaagu- GG-UAGGAGA G|-----CGU 2221 U-CUA-UU-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-GCGU-C 2341 GAAGGUA-U- A-CC(GGUAA -)GGA--GUG CUGG|AGCGA A-UAGAAGUG AGCAUGC-AG 2401 GC|AUG-AGU A--GCGAUAA UUAAUG(UGA GAAU)CAUUA A|CNCC-GUA AACCCAAGGU 2461 UUCCUA-CNC NAUN-(CUCG U)CA|U-CGU AGGGUUAGU| CGN|G-UCCU AAGUCGAGUC 2521 C(GAAA)-g- GGGU-AGACG AUGG-CAAAU UGG-(UU-AA UAUU)C-CAA U|AC|ca-a- 2581 ca-uua-gun ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -----ugcga u------gga a--gga-cgc uuagggcua- aggg-g-|gc u-agc(gg-- 2761 auggaa-gu- --)gc-uagu -|cuaa---- ---------- ---gguc-gu agga------ 2821 --gguua-ua cagg(aa-aa -u-)cc|g-- uauaacaaua ---------- cucc-gagaa 2881 cug-aaag|g cu-|------ -uuuugaagu c(-uucg--) gauggauaga ------agaa 2941 --ccccu-ga uncc-guc-| gagccaagaa a-aguuuc-u aaguuu---- ------ag-c 3001 -uaaug--uu n|C|CCGUAC CGUAAACC(G ACACA)GG|U GG-GUGGGA- U-(GAGUA)U 3061 UCUAAGGCNC ||NUNGAAGA ACUCUCUUU- ---------- ----AAGGAA CUCUGCAAAA 3121 UAGCACCGUA UC(-UUCG)G UAUAAGGUGU |GGUU---ag -cuuuguauu a-------gg 3181 a(-uuuac)u ccgaaa---- ---gcgaag- a---AAC-U| U(ACA)ACAA AGAGUCC-CU 3241 CC|CGACU-- ---GU(UUAC CAAAA)ACAC AGCACUCUG| CUAACUC(GU AA------)G 3301 AGGAUGU-AU AGGGUGUGA- CGCCUGCCCG GU|GCUC-GA A-GGUUAAUU GAUGGGGUUA 3361 GC-------- (A-UUA)--- --------GC GA-AGCUCUU GAUCGAAGC~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.jejuni.5 4759 bp RNA RNA 11-JAN-191 DEFINITION Campylobacter jejuni ssp.doylei. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter jejuni ssp.doylei. ORGANISM Campylobacter jejuni ssp.doylei. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X67766 LOCUS CJD23S 915 bp DNA BCT 13-DEC-1993 DEFINITION C.jejuni ssp.doylei 23S rRNA gene ACCESSION X67766 KEYWORDS 23S ribosomal RNA; ribosomal RNA. SOURCE Campylobacter jejuni ORGANISM Campylobacter jejuni Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic/microaerophilic, motile, helical/vibrioid bacteria. REFERENCE 1 (bases 1 to 915) AUTHORS Van Camp,G. TITLE Direct Submission JOURNAL Submitted (19-OCT-1992) to the EMBL/GenBank/DDBJ databases. G. Van Camp, University of Antwerp (UIA), Dept of Biochemistry, Universiteitsplein 1, B-2610 Antwerpen, BELGIUM STANDARD full automatic REFERENCE 2 (bases 1 to 915) AUTHORS Van Camp,G., Van de Peer,Y., Neefs,J.M., Vandamme,P. and De Wachter,R. TITLE Presence of internal transcribed spacers in the 16S and 23S ribosomal RNA genes of Campylobacter JOURNAL Syst. Appl. Microbiol. 16, 361-368 (1993) STANDARD full automatic FEATURES Location/Qualifiers source 1..915 /organism="Campylobacter jejuni" /strain="LMG 7790" /sub_strain="doylei" rRNA <1..>915 /product="23S ribosomal RNA" BASE COUNT 285 a 151 c 239 g 237 t 3 others ORIGIN BASE COUNT 285 a 151 c 239 g 237 t 3847 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)-~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ 1201 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 1381 ~~~~~~~~~) ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|~~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|GAA 1801 AGN(GUAAUA )GC|ACACUG GU-----CUA GU-GAU-UU- -UGC|GCGGA AAAU-AUAA- 1861 CGGGGCU-AA AGUAA-G|U| ACCGAAGCU| GUAG|auuug cacacaa(c- uagauuauuu 1921 aaguuuagaa uauuaagaaa cuaaguuaua u--------- ---uuuuacu gauuuuuaua 1981 gaguaaagau agaaauuaaa cuuaguaaaa -cag-aaaaa uauucuuaga cuaaag---- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- -uuaaguagu uuaag)-uug ugugcaagu- GG-UAGGAGA G|-----CGU 2221 U-CUA-UU-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-GCGU-C 2341 GAAGGUA-U- A-CC(GGUAA -)GGA--GUG CUGG|AGCGA A-UAGAAGUG AGCAUGC-AG 2401 GC|AUG-AGU A--GCGAUAA UUAAUG(UGA GAAU)CAUUA A|CGCC-GUA AACCCAAGGU 2461 UUCCUA-CGC GAUG-(CUCG U)CA|U-CGU AGGGUUAGU| CGG|G-UCCU AAGUCGAGUC 2521 C(GAAA)-g- GG-U-AGACG AUGG-CAAAU UGG-(UU-AA UAUU)C-CAA U|AC|ca-a- 2581 ca-uua-gug ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -----ugcga u------gga a--gga-cgc uuagggcua- aggg-g-|gc u-agc(gg-- 2761 auggaa-gu- --)gc-uagu -|cuaa---- ---------- ---gguu-gu agga------ 2821 --gcuua-ua cagg(ca-aa -u-)cc|g-- uauaagaaca ---------- cucu-gagaa 2881 cug-aaag|g cu-|------ -uuuugaagu c(-uucg--) gauggauaga ------agaa 2941 --ccccu-ga ugcc-guc-| gagccaagaa a-aguuuc-u aaguuu---- ------ag-c 3001 -uaaug--uu g|C|CCGUAC CGUAAACC(G ACACA)GG|U GG-GUGGGA- U-(GAGUA)U 3061 UCUAAGGCGC ||GUGGAAGA ACUCUCUUU- ---------- ----AAGGAA CUCUGCAAAA 3121 UAGCACCGUA UC(-UUCG)G UAUAAGGUGU |GGUU---ag -cuucguacu a-------gg 3181 a(-uugac)u ccgaaa---- ---gcgaag- a---AAC-U| U(ACA)ACAA AGAGUCC-CU 3241 CC|CGACU-- ---GU(UUAC CAAAA)ACAC AGCACUCUG| CUAACUC(GU AA------)G 3301 AGGAUGU-AU AGGGUGUGA- CGCCUGCCCG GU|GCUC-GA A-GGUUAAUU GAUGGGGUNN 3361 G--------- (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.jejuni.6 4759 bp RNA RNA 11-JAN-191 DEFINITION Campylobacter jejuni. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter jejuni. ORGANISM Campylobacter jejuni. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X66616 ID CJ23SR standard; DNA; PRO; 938 BP. XX AC X66616; XX DT 22-MAR-1994 (Rel. 39, Created) DT 22-MAR-1994 (Rel. 39, Last updated, Version 2) XX DE C.jejuni 23S rRNA XX KW 23S ribosomal RNA; ribosomal RNA. XX OS Campylobacter jejuni OC Prokaryota; Bacteria; Gracilicutes; Scotobacteria; OC Aerobic/microaerophilic, motile, helical/vibrioid bacteria. XX RN [1] RP 1-938 RA Van Camp G.; RT ; RL Submitted (04-JUN-1992) to the EMBL/GenBank/DDBJ databases. RL G. Van Camp, University of Antwerp (UIA), Dept of Biochemistry, RL Universiteitsplein 1, B-2610 Antwerpen, BELGIUM XX RN [2] RP 1-938 RA Van Camp G., Chapelle S., De Wachter R.; RT "Amplification and sequencing of variable regions in bacterial 23S RT ribosomal RNA genes with conserved primer sequences"; RL Curr. Microbiol. 27:147-151(1993). XX FH Key Location/Qualifiers FH FT source 1..938 FT /organism="Campylobacter jejuni" FT /strain="ATCC33250" FT rRNA 1..938 FT /partial FT /gene="23S rRNA" XX SQ Sequence 938 BP; 285 A; 159 C; 244 G; 246 T; 4 other; BASE COUNT 285 a 159 c 244 g 246 t 3825 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ 1201 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 1381 ~~~~~~~~~) ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|~~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~UAAUA )GC|UCACUG GU-----CUA GU-GAU-UU- -UGC|GCGGA AAAU-AUAA- 1861 CGGGGCU-AA AGUAA-G|U| ACCGAAGCU| GUAG|acuug cgcacaa(cu uagauuauuu 1921 aaguuuagaa ua-ugagaaa cuaaguuaua u--------- ---uuuuacu gauuuuuaua 1981 gaguaaagau agaaauaaaa cuuaguaaaa ucaguaaaaa uauucuuagg cuaaag---- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- -uuaaguagu uuaag)-uug ugugcaagu- GG-UAGGAGA G|-----CGU 2221 U-CUA-UN-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-GCGU-C 2341 GAAGGUA-U- A-CC(GGUAA -)GGA--GUG CUGG|AGCGA A-UAGAAGUG AGCAUGC-AG 2401 GC|AUG-AGU A--GCGAUAA UUAAUG(UGA GAAU)CAUUA A|CGCC-GUA AACCCAAGGU 2461 UUCCUA-CGC GAUG-(CUCG U)CA|U-CGU AGGGUUAGU| CGG|G-UCCU AAGUCGAGUC 2521 C(NNAA)-G- GG-U-AGNCG AUGG-CAAAU UGG-(UU-AA UAUU)C-CAA U|AC|ca-a- 2581 ca-uua-gug ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -----ugcga u------gga a--gga-cgc uuagggcua- aggg-g-|gc u-agc(gg-- 2761 auggaa-gu- --)gc-uagu -|cuaa---- ---------- ---gguc-gu agga------ 2821 --gguua-ua cagg(ca-aa -u-)cc|g-- uauaacaaua ---------- cucc-gagaa 2881 cug-aaag|g cu-|------ -uuuugaagu c(-uucg--) gauggauaga ------agaa 2941 --ccccu-ga ugcc-guc-| gagccaagaa a-aguuuc-u aaguuu---- ------ag-c 3001 -uaaug--uu g|C|CCGUAC CGUAAACC(G ACACA)GG|U GG-GUGGGA- U-(GAGUA)U 3061 UCUAAGGCGC ||GUGGAAGA ACUCUCUUU- ---------- ----AAGGAA CUCUGCAAAA 3121 UAGCACCGUA UC(-UUCG)G UAUAAGGUGU |GGUU---ag -cuuugua-- ----uu-agg 3181 a(-uuuac)u ccgaaa---- ---gcaagg- a---AAC-U| U(ACA)ACAA AGAGUCC-CU 3241 CC|CGACU-- ---GU(UUAC CAAAA)ACAC AGCACUCUG| CUAACUC(GU AA------)G 3301 AGGAUGU-AU AGGGUGUGA- CGCCUGCCCG GU|GCUC-GA A-GGUUAAUU GAUGGGGUUA 3361 GC-------- (A-UUA)--- --------GC GA-AGCUCUU GAUCGAAGCC |CG~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.lari.1 4759 bp RNA RNA 11-JAN-191 DEFINITION Campylobacter lari. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter lari. ORGANISM Campylobacter lari. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X67769 LOCUS CL23S 791 bp DNA BCT 13-DEC-1993 DEFINITION C.lari 23S rRNA gene ACCESSION X67769 KEYWORDS 23S ribosomal RNA; ribosomal RNA. SOURCE Campylobacter lari ORGANISM Campylobacter lari Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic/microaerophilic, motile, helical/vibrioid bacteria. REFERENCE 1 (bases 1 to 791) AUTHORS Van Camp,G. TITLE Direct Submission JOURNAL Submitted (19-OCT-1992) to the EMBL/GenBank/DDBJ databases. G. Van Camp, University of Antwerp (UIA), Dept of Biochemistry, Universiteitsplein 1, B-2610 Antwerpen, BELGIUM STANDARD full automatic REFERENCE 2 (bases 1 to 791) AUTHORS Van Camp,G., Van de Peer,Y., Neefs,J.M., Vandamme,P. and De Wachter,R. TITLE Presence of internal transcribed spacers in the 16S and 23S ribosomal RNA genes of Campylobacter JOURNAL Syst. Appl. Microbiol. 16, 361-368 (1993) STANDARD full automatic FEATURES Location/Qualifiers source 1..791 /organism="Campylobacter lari" /strain="LMG 8846" rRNA <1..>804 /product="23S ribosomal RNA" BASE COUNT 227 a 148 c 219 g 197 t ORIGIN BASE COUNT 227 a 148 c 219 g 197 t 3968 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ 1201 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 1381 ~~~~~~~~~) ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|~~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(GUAAUA )GC|UCACUG GU-----CUA GU-GAU-UU- -UGC|GCGGA AAAU-AUAA- 1861 CGGGGCU-AA AGUAA-G|U| ACCGAAGCU| GUAG|acuug au-----(uu u--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --aucaagu- GG-UAGGAGA G|-----CGU 2221 U-CUA-UU-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- -U--GCGc-C 2341 GAAGGUA-U- A-CC(GGUAA -)GGA--GUG CUGG|AGCGA A-UAGAAGUG AGCAUGC-AG 2401 GC|AUG-AGU A--GCGAUAA UUAAUG(UGA GAAU)CAUUA A|CGCC-GUA AACCCAAGGU 2461 UUCCUA-CGC GAUG-(CUCG U)CA|U-CGU AGGGUUAGU| CGG|G-UCCU AAGUCGAGUC 2521 C(GAAA)-g- GG-U-AGACG AUGG-CAAAU UGG-(UU-AA UAUU)C-CAA U|AC|ca-a- 2581 ca-uua-gug ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -----ugcga u------gga a--gga-cgc uuagggcua- aggg-g-|gc u-agc(gg-- 2761 auggaa-gu- --)gc-uagu -|cuaa---- ---------- ---gguc-gu agga------ 2821 --gguua-ua cagg(ca-aa -u-)cc|g-- uauaacaaua ---------- cucc-gagaa 2881 cug-aaag|g cu-|------ -uuuugaagu c(-uucg--) gauggauaga ------agaa 2941 --ccccu-ga ugcc-guc-| gagccaagaa a-aguuuc-u aaguuu---- ------ag-c 3001 -uaaug--uu g|C|CCGUAC CGUAAACC(G ACACA)GG|U GG-GUGGGA- U-(GAGUA)U 3061 UCUAAGGCGC ||GUGGAAGA ACUCUCUUU- ---------- ----AAGGAA CUCUGCAAAA 3121 UAGCACCGUA UC(-UUCG)G UAUAAGGUGU |GGUU---cg -cuucguauu a-------gg 3181 a(-uuuac)u ccgaaa---- ---gcgaag- a---aac-U| U(ACA)ACAA AGAGUCC-CU 3241 CC|CGACU-- ---GU(UUAC CAAAA)ACAC AGCACUCUG| CUAACUC(GU AA------)G 3301 AGGAUGU-AU AGGGUGUGA- CGCCUGCCCG GU|GCUC-GA A-GGUUAAUU GAUGGGGUUA 3361 GC-------- (a-uua)--- --------GC GA-AGCUCUU ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.lari.2 4759 bp RNA RNA 12-MAR-1997 DEFINITION Campylobacter lari.; 23S ribosomal RNA; 23S rRNA gene. ACCESSION Y11764 KEYWORDS 23S ribosomal RNA; 23S rRNA gene. SOURCE Campylobacter lari. ORGANISM Campylobacter lari. REFERENCE 1 (bases 1 to 2657) AUTHORS Stanley,J. Linton,D., Hurtado,A., Clewley,J.P., Chart,H., Owen,R.J. and TITLE flagellin genes A Campylobacter group from fresh water with enlarged JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2657) AUTHORS Stanley,J. TITLE Direct Submission JOURNAL Submitted (11-MAR-1997) J. Stanley, Central Public Health Laboratory, Virus Reference Division, 61 Colindale Avenue, NW9 5HT, UK STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: Y11764 BASE COUNT 789 a 520 c 728 g 619 t 2103 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~GAUU|UCCG AAUGGG(GCA 241 A)CCC|agua uaua(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----caga)u auauacu-ac c--------( 481 ---auaa--- --)------- -u-g--gaG- C-GAAC|GA- GGGGAAUU|G A(AACA)UCU 541 UAGUA-CCCU CAGGAAAAGA AAUC(-AAUA --)GAGAU|U AC-GUCAGUA GC(GGCGA)G 601 CGA-AAG-CG UA-AGA-GGG CAAACCCAgu -g-------- -----(cuug -)-------- 661 -----cacug gggguuguag gacu------ ---------- ---------- ---------- 721 ------graa ugugcaauaa guaagguu-a guaGAAC-ac u-c(u-ggaa a)g-uguagc 781 |c(aua)gaG GG(UGAUAGU )CCCGU-Aua c-gaaaacca aacuuuagcu agca------ 841 ---------- --------gu auccu---GA GUAGGGCGAA A(CACGUG-G AA)UUUUGUC 901 UGAAGCU-GG G-UC(GACCA C)GA-UCC-A ACCCUAA--- -AUACUAAUA CCAGAUCGAU 961 AGUG-CAC-A AGUACC(GUG A)-GGGA-AA GGUGAAAA-G AACUGA(GGU GA-)UCAGA- 1021 -GUGAAA-UA GAACCUGAAA CCAU-UUGCU UACAA-U-CA UUCAGAGCAC -UAU-GUA-- 1081 --------(- ---gcaa--) ---------- --UACA-GUG UGAUGGACUG CCU(UUU-GC 1141 AU|A)AUGA| -GCCUGCGAG UUGU-GGUG- UCUGGC-AAG GUUAAGC--( --ACAC)--G 1201 C-GAAGCCGU AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC GC-------- ---------- 1261 ---------- ------UUAA G-UCAGAUGC UGCA-GACCC GAAAC-GAA- GUGA-UCUAU 1321 CCAUGAG|CA AGUUGAAGCU AGUG(UAAG) AA-CUAGUGG AGGACUGAAC C-CAUAGGC( 1381 -GUUGAAAA) GCCCC|GGGA U-GAC-UUGU GGAUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 UCGUGAUAGC UGGUUCUCUC CGAAAUAUAU (-UUAG)GUA UAGC|-GUUG UGUCG---U| 1501 -AAU|AUAAG G|GGGUAA|A GC-ACUGA-A UGGGCUA-GG |-GCAU-(ac acc)AAUGUA 1561 CCAAACCCUA -UCAAACUCC GAA-UA-|CC U-U-A-U--- AUGU---AA| UCA-CAGCAG 1621 UCAGGC--GG C-GAGU(GAU AAA)AUCCGU -CGUC-AAGA GGG(-AAACA A-)CCCAAAC 1681 UAUCAGCUAA G-GU|CCCC- AAAUC-UUAC -U-UAA-GUG ------GAAA ACGAUGUG-A 1741 AGUUACUUA- AACAACCAGG AGGUUGGC(U UAGAAGCA)G CCAU-CCU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG GU-----CUA GU-GAU-UU- -UGC|GCGGA AAAU-AUAA- 1861 CGGGGCU-AA AGUAA-G|C| ACCGAAGCU| AUAG|acuua -------(gu ac-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ----uaagu- GG-UAGGAGA G|-----CGU 2221 U-CUA-UU-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-GCGU-C 2341 GAAGGUA-U- A-CC(GGUAA -)GGA--GUG CUGG|AGCGA A-UAGAAGUG AGCAUGC-AG 2401 GC|AUG-AGU A--GCGAUAA UUAAUG(UGA GAAU)CAUUA A|CGCC-GUA AACCCAAGGU 2461 UUCCUA-CGC GAUG-(CUCG U)CA|U-CGU AGGGUUAGU| CGG|G-UCCU AAGUCGAGUC 2521 C(GAAA)-G- GGGU-AGACG AUGG-CAAAU UGG-(UU-AA UAUU)C-CAA U|AC|CA-A- 2581 CA-UUA-GUG ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -----ugcga u------gga a--gga-cgc uuagggcua- agca-a-|gc u-agc(gg-- 2761 auggaa-gu- --)gc-uagu -|cuaa---- ---------- ---ggau-gu agga------ 2821 --gcuua-ua cagg(ca-aa -u-)cc|g-- uauaagaaua ---------- cucc-gagau 2881 cuu-aaag|g cu-|------ -cuuugaagu c(-uucg--) gauggauagg ------agaa 2941 --uugcu-ga ugcc-guc-| gagccaagaa a-aguuuc-u aaguuu---- ------ag-c 3001 -uaaug--uu g|c|CCGUAC CGUAAACC(G ACACA)GG|U GG-GUGGGA- U-(GAGUA)U 3061 UCUAAGGCGC ||GUGGAAGA ACUCUCUUU- ---------- ----AAGGAA CUCUGCAAAA 3121 UAGCACCGUA UC(-UUCG)G UAUAAGGUGU |GGUU---cg -cuuugua-- ----uu-aga 3181 a(-uuuac)u ucgaaa---- ---gcaaag- a---AAC-U| U(ACA)ACAA AGAGUCC-CU 3241 CC|CGACU-- ---GU(UUAC CAAAA)ACAC AGCACUCUG| CUAACUC(GU AA------)G 3301 AGGAUGU-AU AGGGUGUGA- CGCCUGCCCG GU|GCUC-GA A-GGUUAAUU GAUGGGGUUA 3361 GC-------- (a-uua)--- --------GC GA-AGCUCUU GAUCGAAGCC |CGAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGU(U 3481 AAAU)ACCGA C|CUGCAUGA AUGGCGUAAC GA-GAUGGGA GCUGUCUCAA AGAGGGAUCC 3541 A|GUGAAAUU |GUAGUGG-A GG(UGAAAAU U)CCUCCUAC CCGCGGC-AA GACGGAAAGA 3601 CCCCGUGG|A CCU-UUACUA C|AGCUUGAC ACU|GCUAUU UGGAUAAGAA UGUGCAGGAU 3661 AGGUGGGAGG CUUUGAGU-- AAUAGAC(GC CA)GUUUAUU AUGAGCCAUU -G-UUGAGAU 3721 ACCACU|CUU U-CUUAUUUG GGU-AGCUAA -CCAGCU--- -UGAG(--UU -AUC)-CUCA 3781 AGUGG-GACA AUGUCUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|GCCUC C(CAA-AUAA 3841 UAAC)GGAGG C|U|U|ACAA AGGUUGGC|U CAGAACGG(U UGGAAA)UCG UUCGUA-GA| 3901 GU(A|UAAAG )GUAUAAGCC AGCUUAACUG CAAGAC(AUA CAA)GUCAAG CAGAGAC(GA 3961 AA)GU-CGGU |CUUAGUGAU CCGGUGGUUC UG(UGUGGA) AGG|GCCAUC GCUCAAA|GG 4021 AUAAAAGGUA CCC|CGGG|G AUAACAG|GC UGA--UCUCC CCCAAGA(G- CUC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GGAG 4141 C---A)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|CG-UAA 4261 GAAGAUU|GA -|AGAGAUU- UGA------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGUUGA|ACA AACCACUGGU GUAGCUGU|U GUUCU(GC-C A-)AGAGCA- UCGCAGCGUA 4381 GCU-AAGUUU GGAACGGAUA AACGCU(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~-~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.upsali.1 4759 bp RNA RNA 11-JAN-191 DEFINITION Campylobacter upsaliensis. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter upsaliensis. ORGANISM Campylobacter upsaliensis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X67763 LOCUS CU23S 807 bp DNA BCT 13-DEC-1993 DEFINITION C.upsaliensis (LMG 7533) 23S rRNA gene ACCESSION X67763 KEYWORDS 23S ribosomal RNA; ribosomal RNA. SOURCE Campylobacter upsaliensis ORGANISM Campylobacter upsaliensis Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic/microaerophilic, motile, helical/vibrioid bacteria. REFERENCE 1 (bases 1 to 807) AUTHORS Van Camp,G. TITLE Direct Submission JOURNAL Submitted (19-OCT-1992) to the EMBL/GenBank/DDBJ databases. G. Van Camp, University of Antwerp (UIA), Dept of Biochemistry, Universiteitsplein 1, B-2610 Antwerpen, BELGIUM STANDARD full automatic REFERENCE 2 (bases 1 to 807) AUTHORS Van Camp,G., Van de Peer,Y., Neefs,J.M., Vandamme,P. and De Wachter,R. TITLE Presence of internal transcribed spacers in the 16S and 23S ribosomal RNA genes of Campylobacter JOURNAL Syst. Appl. Microbiol. 16, 361-368 (1993) STANDARD full automatic FEATURES Location/Qualifiers source 1..807 /organism="Campylobacter upsaliensis" /strain="LMG 7533" rRNA <1..>807 /product="23S ribosomal RNA" BASE COUNT 238 a 149 c 215 g 196 t 9 others ORIGIN BASE COUNT 238 a 149 c 215 g 196 t 3961 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ 1201 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 1381 ~~~~~~~~~) ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|~~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~AA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG GU-----CUA GU-GAU-UU- -UGC|GCGGA AAAU-AUAA- 1861 CGGGGCU-AA AGUAA-G|U| ACCGAAGCU| UUAG|gcuug a------(uu ua-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ---ucaagc- GG-UAGGAGA G|-----CGU 2221 U-CUA-UU-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-GCGU-C 2341 GAAGGUA-U- A-CC(GACAA -)GGA--GUG CUGG|AGCGA A-UAGAAGUG AGCAUGC-AG 2401 GC|AUG-AGU A--GCGAUAA UUAAUG(UGA GAA-)CAUUA A|CNCC-GUA AACCCAAGGU 2461 UUCCUA-CGC NAUN-(CUCG U)CA|U-CGU AGGGUUAGU| CNN|N-UCCU AANCUGAGUC 2521 C(GAAA)-g- GGGU-AAGCG AUGG-CAAAU AGG-(UU-AA UAUU)C-CUA U|AC|ca-a- 2581 ca-uua-gug ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -----ugcga u------gga a--gga-cgc uuagggcua- aggg-g-|gc u-agc(gg-- 2761 auggaa-gu- --)gc-uagu -|cuaa---- ---------- ---gguc-gu agga------ 2821 --gguua-ua cagg(ca-aa -u-)cc|g-- uauaacaaua ---------- cucc-gagaa 2881 cug-aaag|g cu-|------ -uuuugaagu c(-uucg--) gauggaaaga ------agaa 2941 --ccucu-ga ugcc-guc-| gagccaagaa a-aguuuc-u aaguuu---- ------ag-c 3001 -uaaug--uu g|C|CCGUAC CGUAAACC(G ACACA)GG|U GG-GUGGGA- U-(GAGUA)U 3061 UCUAAGGNGN ||GUGGAAGA ACUCUCUUU- ---------- ----AAGGAA CUCUGCAAAA 3121 UAGCACCGUA UC(-UUCG)G UAUAAGGUGU |GCCU---cc -cuuuguauu a-------ga 3181 a(-uucac)u ucgaaa---- ---gcaaag- a---agg-U| U(ACA)ACAA AGAGUCC-CU 3241 CC|CGACU-- ---GU(UUAC CAAAA)ACAC AGCACUCUG| CUAACUC(GU AA------)G 3301 AGGAUGU-AU AGGGUGUGA- CGCCUGCCCG GU|GCUC-GA A-GGUUAAUU GAUGGGGUUA 3361 GC-------- (a-uua)--- --------GC GA-AGCUCUU GAUCGAAG~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.upsali.2 4759 bp RNA RNA 11-JAN-191 DEFINITION Campylobacter upsaliensis. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter upsaliensis. ORGANISM Campylobacter upsaliensis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X67774 LOCUS CU8854 996 bp DNA BCT 13-DEC-1993 DEFINITION C.upsaliensis (LMG 8854) 23S rRNA gene ACCESSION X67774 KEYWORDS 23S ribosomal RNA; ribosomal RNA. SOURCE Campylobacter upsaliensis ORGANISM Campylobacter upsaliensis Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic/microaerophilic, motile, helical/vibrioid bacteria. REFERENCE 1 (bases 1 to 996) AUTHORS Van Camp,G. TITLE Direct Submission JOURNAL Submitted (19-OCT-1992) to the EMBL/GenBank/DDBJ databases. G. Van Camp, University of Antwerp (UIA), Dept of Biochemistry, Universiteitsplein 1, B-2610 Antwerpen, BELGIUM STANDARD full automatic REFERENCE 2 (bases 1 to 996) AUTHORS Van Camp,G., Van de Peer,Y., Neefs,J.M., Vandamme,P. and De Wachter,R. TITLE Presence of internal transcribed spacers in the 16S and 23S ribosomal RNA genes of Campylobacter JOURNAL Syst. Appl. Microbiol. 16, 361-368 (1993) STANDARD full automatic FEATURES Location/Qualifiers source 1..996 /organism="Campylobacter upsaliensis" /strain="LMG 8854" rRNA <1..>996 /product="23S ribosomal RNA" BASE COUNT 314 a 168 c 241 g 271 t 2 others ORIGIN BASE COUNT 314 a 168 c 241 g 271 t 3765 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ 1201 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 1381 ~~~~~~~~~) ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|~~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG GU-----CUA GU-GAU-UU- -UGC|GCGGA AAAU-AUAA- 1861 CGGGGCU-AA AGUAA-G|U| ACCGAAGCU| UUAG|acuug cacacaa(cu uagaugauuu 1921 aaauuuaaaa uaugagaagc uaaauuuauu uuuauuuauu uuungcuuau cuuuauucau 1981 uuuuaua-ga guaaagauaa aaacaaaaac uuc-guaaaa auaauaaaaa uauaguaaaa 2041 ancaauaaaa auauucuuag auuaaguuag ucauuuaguc auuag----- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)-uug ugugcaagu- GG-UAGGAGA G|-----CGU 2221 U-CUA-UU-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-GCGU-C 2341 GAAGGUA-U- A-CC(GGUAA -)GGA--GUG CUGG|AGCGA A-UAGACGUG AGCAUGC-AG 2401 GC|AUG-AGU A--GCGAUAA UUAAUG(UGA GAAU)CAUUA A|CGCC-GUA AACCCAAGGU 2461 UUCCUA-CGC GAUG-(CUCG U)CA|U-CGU AGGGUUAGU| CGG|G-UCCU AAGUCGAGUC 2521 C(GAAA)-g- GG-U-AGACG AUGG-CAAAU UGG-(UU-AA UAUU)C-CAA U|AC|ca-a- 2581 ca-uua-gug ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -----ugcga u------gga a--gga-cgc uuagggcua- aggg-g-|gc u-agc(gg-- 2761 auggaa-gu- --)gc-uagu -|cuaa---- ---------- ---gguc-gu agga------ 2821 --gcuua-ua cagg(aa-aa -u-)cc|g-- uauaacaaua ---------- cucc-gagaa 2881 cug-aaag|g cu-|------ -uuuugaagu c(-uucg--) gauggauaga ------agaa 2941 --ccccu-ga ugcc-guc-| gagccaagaa a-aguuuc-u aaguuu---- ------ag-c 3001 -uaaug--uu g|C|CCGUAC CGUAAACC(G ACACA)GG|U GG-GUGGGA- U-(GAGUA)U 3061 UCUAAGGCGC ||GUGGAAGA ACUCUCUUU- ---------- ----AAGGAA CUCUGCAAAA 3121 UAGCACCGUA UC(-UUCG)G UAUAAGGUGU |GCCU---cc -cuuuguauu a-------ga 3181 a(-uuuac)u ucgaaa---- ---gcaaag- g---agg-U| U(ACA)ACAA AGAGUCC-CU 3241 CC|CGACU-- ---GU(UUAC CAAAA)ACAC AGCACUCUG| CUAACUC(GU AA------)G 3301 AGGAUGU-AU AGGGUGUGA- CGCCUGCCCG GU|GCUC-GA A-GGUUAAUU GAUGGGGUUA 3361 GC-------- (a-uua)--- --------GC GA-AGCUCUU GAUCGAAGCC |CG~~~~~~~ 3421 |-~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.coli.1 4759 bp RNA RNA 11-JAN-191 DEFINITION Campylobacter coli. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter coli. ORGANISM Campylobacter coli. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X67764 LOCUS CC6440 805 bp DNA BCT 13-DEC-1993 DEFINITION C.coli (LMG 6440) 23S rRNA gene ACCESSION X67764 KEYWORDS 23S ribosomal RNA; ribosomal RNA. SOURCE Campylobacter coli ORGANISM Campylobacter coli Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic/microaerophilic, motile, helical/vibrioid bacteria. REFERENCE 1 (bases 1 to 805) AUTHORS Van Camp,G. TITLE Direct Submission JOURNAL Submitted (19-OCT-1992) to the EMBL/GenBank/DDBJ databases. G. Van Camp, University of Antwerp (UIA), Dept of Biochemistry, Universiteitsplein 1, B-2610 Antwerpen, BELGIUM STANDARD full automatic REFERENCE 2 (bases 1 to 805) AUTHORS Van Camp,G., Van de Peer,Y., Neefs,J.M., Vandamme,P. and De Wachter,R. TITLE Presence of internal transcribed spacers in the 16S and 23S ribosomal RNA genes of Campylobacter JOURNAL Syst. Appl. Microbiol. 16, 361-368 (1993) STANDARD full automatic FEATURES Location/Qualifiers source 1..805 /organism="Campylobacter coli" /strain="LMG 6440" rRNA <1..>805 /product="23S ribosomal RNA" BASE COUNT 231 a 154 c 222 g 198 t ORIGIN BASE COUNT 231 a 154 c 222 g 198 t 3954 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ 1201 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 1381 ~~~~~~~~~) ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|~~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~GC(GUAAUA )GC|UCACUG GU-----CUA GU-GAU-UU- -UGC|GCGGA AAAU-AUAA- 1861 CGGGGCU-AA AGUAA-G|U| ACCGAAGCU| GUAG|acuua g------(uu ua-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ---cuaagu- GG-UAGGAGA G|-----CGU 2221 U-CUA-UU-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-GCGu-C 2341 GAAGGUA-U- A-CC(GGUAA -)GGA--GUG CUGG|AGCGA A-UAGAAGUG AGCAUGC-AG 2401 GC|AUG-AGU A--GCGAUAA UUAAUG(UGA GAAU)CAUUA A|CGCC-GUA AACCCAAGGU 2461 UUCCUA-CGC GAUG-(CUCG U)CA|U-CGU AGGGUUAGU| CGG|G-UCCU AAGUCGAGUC 2521 C(GAAA)-g- GGGU-AGACG AUGG-CAAAU UGG-(UU-AA UAUU)C-CAA U|AC|ca-a- 2581 ca-uua-gug ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -----ugcga u------gga a--gga-cgc uuagggcua- aggg-g-|gc u-agc(gg-- 2761 auggaa-gu- --)gc-uagu -|cuaa---- ---------- ---gguc-gu agga------ 2821 --gguua-ua cagg(ca-aa -u-)cc|g-- uauaacaaua ---------- cucc-gagaa 2881 cug-aaag|g cu-|------ -uuuugaagu c(-uucg--) gauggauaga ------agaa 2941 --ccccu-ga ugcc-auc-| gagccaagaa a-aguuuc-u aaguuu---- ------ag-c 3001 -uaaug--uu g|C|CCGUAC CGUAAACC(G ACACA)GG|U GG-GUGGGA- U-(GAGUA)U 3061 UCUAAGGCGC ||GUGGAAGA ACUCUCUUU- ---------- ----AAGGAA CUCUGCAAAA 3121 UAGCACCGUA UC(-UUCG)G UAUAAGGUGU |GGUU---cg -cuucguauu a-------gg 3181 a(-uuuac)u ccgaaa---- ---gcgaag- a---AAC-U| U(ACA)ACAA AGAGUCC-CU 3241 CC|CGACU-- ---GU(UUAC CAAAA)ACAC AGCACUCUG| CUAACUC(GU AA------)G 3301 AGGAUGU-AU AGGGUGUGA- CGCCUGCCCG GU|GCUC-GA A-GGUUAAUU GAUGGGGUUA 3361 GC-------- (a-uua)--- --------GC CA-AGCUCUU GAUCGAAGCC |CC~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.coli.2 4759 bp RNA RNA 11-JAN-191 DEFINITION Campylobacter coli. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter coli. ORGANISM Campylobacter coli. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X67770 LOCUS CC7535 804 bp DNA BCT 13-DEC-1993 DEFINITION C.coli (LMG 7535) 23S rRNA gene ACCESSION X67770 KEYWORDS 23S ribosomal RNA; ribosomal RNA. SOURCE Campylobacter coli ORGANISM Campylobacter coli Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic/microaerophilic, motile, helical/vibrioid bacteria. REFERENCE 1 (bases 1 to 804) AUTHORS Van Camp,G. TITLE Direct Submission JOURNAL Submitted (19-OCT-1992) to the EMBL/GenBank/DDBJ databases. G. Van Camp, University of Antwerp (UIA), Dept of Biochemistry, Universiteitsplein 1, B-2610 Antwerpen, BELGIUM STANDARD full automatic REFERENCE 2 (bases 1 to 804) AUTHORS Van Camp,G., Van de Peer,Y., Neefs,J.M., Vandamme,P. and De Wachter,R. TITLE Presence of internal transcribed spacers in the 16S and 23S ribosomal RNA genes of Campylobacter JOURNAL Syst. Appl. Microbiol. 16, 361-368 (1993) STANDARD full automatic FEATURES Location/Qualifiers source 1..804 /organism="Campylobacter coli" /strain="LMG 7535" rRNA <1..>791 /product="23S ribosomal RNA" BASE COUNT 234 a 148 c 212 g 203 t 7 others ORIGIN BASE COUNT 234 a 148 c 212 g 203 t 3962 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ 1201 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 1381 ~~~~~~~~~) ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|~~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~GC(GUAAUA )GC|UCACUG GU-----CUA GU-GAU-UU- -UGC|GCGGA AAAU-AUAA- 1861 CGGGGCU-AA AGUAA-G|C| ACCGAAGCU| AUAG|acuua gu-----(uu u--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --acuaagu- GG-UAGGAGA G|-----CGU 2221 U-CUA-UU-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-GCGu-C 2341 GAAGGUA-U- A-CC(GGUAA -)GGA--GUG CUGG|AGNGA A-UAGAANUG AGCAUGC-AG 2401 GC|AUG-AGU A--GCGAUAA UUAAUG(UGA GAAU)CAUUA A|CNCC-GUA AACCCAAGGU 2461 UUCCUA-CNC GAUG-(CUCG U)CA|U-CGU AGGGUUAGU| CNN|G-UCCU AAGUCGAGUC 2521 C(GAAA)-n- GG-U-AGACG AUGG-CAAAU UGG-(UU-AA UAUU)C-CAA U|AC|ca-a- 2581 ca-uua-gug ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -----ugcga u------gga a--gga-cgc uuagggcua- agca-a-|gc u-agc(gg-- 2761 auggaa-gu- --)gc-uagu -|cuaa---- ---------- ---ggau-gu agga------ 2821 --gcuua-ua cagg(ca-aa -u-)cc|g-- uauaagaaua ---------- cucc-gagau 2881 cuu-aaag|g cu-|------ -cuuugaagu c(-uucg--) gauggauagg ------agaa 2941 --uugcu-ga ugcc-guc-| gagccaagaa a-aguuuc-u aaguuu---- ------ag-c 3001 -uaaug--uu g|C|CCGUAC CGUAAACC(G ACACA)GG|U GG-GUGGGA- U-(GAGUA)U 3061 UCUAAGGCGC ||GUGGAAGA ACUCUCUUU- ---------- ----AAGGAA CUCUGCAAAA 3121 UAGCACCGUA UC(-UUCG)G UAUAAGGUGU |GGUU---cg -cuuuguauu a-------ga 3181 a(-uuuac)u ucgaaa---- ---gcaaag- a---AAC-U| U(ACA)ACAA AGAGUCC-CU 3241 CC|CGACU-- ---GU(UUAC CAAAA)ACAC AGCACUCUG| CUAACUC(GU AA------)G 3301 AGGAUGU-AU AGGGUGUGA- CGCCUGCCCG GU|GCUC-GA A-GGUUAAUU GAUGGGGUUA 3361 GC-------- (a-uua)--- --------GC GA-AGCUCUU GAUCGAAGCC |C~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.coli.3 4759 bp RNA RNA 11-JAN-191 DEFINITION Campylobacter coli. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter coli. ORGANISM Campylobacter coli. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U09611 LOCUS CCU09611 3057 bp DNA BCT 12-JUN-1994 DEFINITION Campylobacter coli VC167 23S ribosomal RNA gene. ACCESSION U09611 KEYWORDS . SOURCE Campylobacter coli ORGANISM Campylobacter coli Eubacteria; Proteobacteria; epsilon subdivision; Campylobacter. REFERENCE 1 (bases 1 to 3057) AUTHORS Trust,T.J., Logan,S.M., Gustafson,C.G., Romaniuk,P.J., Kim,N.W., Chan,V.L., Ragan,M.A., Guerry,P. and Gutell,R.R. TITLE Phylogenetic and molecular characterization of a 23S ribosomal RNA gene positions Campylobacter in the epsilon subdivision of the Proteobacteria and shows the presence of intervening sequences is common in Campylobacter JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 3057) AUTHORS Trust,T.J. TITLE Direct Submission JOURNAL Submitted (11-MAY-1994) Trevor J Trust, Biochemistry and Microbiology, University of Victoria, Petch Building, Victoria, B.C., V8W 3P6, Canada STANDARD full automatic COMMENT NCBI gi: 498572 FEATURES Location/Qualifiers rRNA join(1..1192,1340..3057) /product="23S rRNA" intron 1193..1339 /label=IVS /note="intervening sequence" source 1..3057 /strain="VC167" /organism="Campylobacter coli" BASE COUNT 913 a 579 c 832 g 733 t ORIGIN BASE COUNT 913 a 579 c 832 g 733 t 1702 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------AG GUAAGCUAC- --UAAGAGCG AAUGGUGGAU 121 G|CCUUGA|C UGGUAA|AG| GC-GAUGAAG GA|CGUA(CU AG-AC-)U|- GCG-AUAAGC 181 UACGGG|-GA GCU(G-UC-A AGA-)AGCUU UG-AUC-CGU AGAUU|UCCG AAUGGG(GCA 241 A)CCC|aaug uaua(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----gaga)u auacauu-ac cu-------( 481 ---auau--- --)------- -a-g--gAG- C-GAAC|GA- GGGGAAUU|G A(AACA)UCU 541 UAGUA-CCCU CAGGAAAAGA AAUC(-AAUA --)GAGAU|U GC-GUCAGUA GC(GGCGA)G 601 CGA-AAG-CG CA-AGA-GGG CAAAcccagu -g-------- -----(cuug -)-------- 661 -----cacug gggguuguag gacu------ ---------- ---------- ---------- 721 ------gcaa ugugcaagag gugaguuu-a gcaGAAc-au u-c(u-ggaa a)g-uauagc 781 |c(aua)gaG GG(UGAUAGU )-CCGU-Aug c-gaaaa-ca aaccuuagcu agca------ 841 ---------- --------gu auccu---GA GUAGGGCGGG A(CACGAG-A AA)UCCUGUC 901 UGAAGCU-GG G-UC(GACCA C)GA-UCC-A ACCCUAA--- -AUACUAAUA CCAGAUCGAU 961 AGUG-CAC-A AGUACC(GUG A)-GGGA-AA GGUGAAAA-G AACUGA(GGU GA-)UCAGA- 1021 -GUGAAA-UA GAACCUGAAA CCAU-UUGCU UACAA-U-CA UUCAGAGCCC -UAU-GUA-- 1081 --------(- ---gcaa--) ---------- --UACA-GGG UGAUGGACUG CCU(UUU-GC 1141 AU|A)AUGA| -GCCUGCGAG UUGU-GGUG- UCUGGC-AAG GUUAAGC--( --AAAC)--G 1201 C-GAAGCCGU AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC Gc-------- ---------- 1261 ---------- ------u-ua G-UCAGAUGC UGCA-GACCC GAAAC-GAA- GUGA-UCUAU 1321 CCAUGAG|CA AGUUGAAGCU AGUG(UAAG) AA-CUAGUGG AGGACUGAAC C-CAUAGGC( 1381 -GUUGAAAA) GCCCC|AGGG UAGAC-UUGU GGAUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 UCGUGAUAGC UGGUUCUCUC CGAAAUAUAU (-UUAG)GUA UAGC|-GUUG UGUCG---U| 1501 -AAU|AUAAG G|GGGUAG|A GC-ACUGA-A UGGGCUA-GG |-GCAU-(ac acc)AAUGUA 1561 CCAAACCCUA -UCAAACUCC GAA-UA-|CC U-U-A-U--- augu---AA| UCA-CAGCAG 1621 UCAGGC--GG C-GAGU(GAU AAA)AUCCGU -CGUC-AAGA GGG(-AAACA A-)CCCAGAC 1681 UACCAGCUAA G-GU|CCCU- AAAUC-UUAC -U-UAA-GUG ------GAAA ACGAUGUG-A 1741 AGUUACUUA- AACAACCAGG AGGUUGGC(U UAGAAGCA)G CCAU-CCU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG GU-----CUA GU-GAU-UU- -UGC|GCGGA AAAU-AUAA- 1861 CGGGGCU-AA AGUAA-G|U| ACCGAAGCU| GUAG|acuug cgcacaa(cu uagauuauuu 1921 aaguuuagaa ua-ugagaaa cuaaguuaua uguuuaguua uauuuuuacu gauuuuuaua 1981 gaguaaagau agaaauaaaa cuuaguaaaa ucaguaaaaa uauucuuaga cuaaag---- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- -uuaaguagu uuaag)-uug ugugcaagu- GG-UAGGAGA G|-----CGU 2221 U-CUA-UU-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-GCGU-C 2341 GAAGGUA-U- A-CC(GGUAA -)GGA--GUG CUGG|AGCGA A-UAGAAGUG AGCAUGC-AG 2401 GC|AUG-AGU A--GCGAUAA UUAAUG(UGA GAAU)CAUUA A|CGCC-GUA AACCCAAGGU 2461 UUCCUA-CGC GAUG-(CUCG U)CA|U-CGU AGGGUUAGU| CGG|G-UCCU AAGUCGAGUC 2521 C(GAAA)-G- GGGU-AGACG AUGG-CAAAU UGG-(UU-AA UAUU)C-CAA U|AC|ca-a- 2581 ca-uua-guc g--------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ----ucgcga u------gga a--gga-cgc uuagggcua- aggg-g-|gc u-agc(gg-- 2761 auggaa-gu- --)gc-uagu -|cuaa---- ---------- ---gguc-gu agga------ 2821 --gguua-ua cagg(ca-aa -u-)cc|g-- uauaacaaua ---------- cucc-gagaa 2881 cug-aaag|g cu-|------ -uuuugaagu c(-uucg--) gauggauaga ------agaa 2941 --ccccu-ga ugcc-auc-| gagccaagaa a-aguuuc-u aaguuu---- ------ag-c 3001 -uaaug--uu g|C|CCGUAC CGUAAACC(G ACACA)GG|U GG-GUGGGA- U-(GAGUA)U 3061 UCUAAGGCGC ||GUGGAAGA ACUCUCUUU- ---------- ----AAGGAA CUCUGCAAAA 3121 UAGCACCGUA UC(-UUCG)G UAUAAGGUGU |GGUU---cg -cuucgua-- ----uu-agg 3181 a(-uuuac)u ccgaaa---- ---gcgaag- a---AAC-U| U(ACA)ACAA AGAGUCC-CU 3241 CC|CGACU-- ---GU(UUAC CAAAA)ACAC AGCACUCUG| CUAACUC(GU AA------)G 3301 AGGAUGU-AU AGGGUGUGA- CGCCUGCCCG GU|GCUC-GA A-GGUUAAUU GAUGGGGUUA 3361 GC-------- (A-UUA)--- --------GC GA-AGCUCUU GAUCGAAGCC |CGAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGU(U 3481 AAAU)ACCGA C|CUGCAUGA AUGGCGUAAC GA-GAUGGGA GCUGUCUCAA AGAGGGAUCC 3541 A|GUGAAAUU |GUAGUGG-A GG(UGAAAAU U)CCUCCUAC CCGCGGC-AA GACGGAAAGA 3601 CCCCGUGG|A CCU-UUACUA C|AGCUUGAC ACU|GCUAUU UGGAUAAGAA UGUGCAGGAU 3661 AGGUGGGAGG CUUUGAGU-- AUAUGAC(GC CA)GUUGUAU AUGAGCCAUU -G-UUGAGAU 3721 ACCACU|CUU U-CUUAUUUG GGU-AGCUAA -CCAGCU--- -UGAG(--UU -AUC)-CUCA 3781 AGUGG-GACA AUGUCUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|GCCUC C(CAA-AUAA 3841 UAAC)GGAGG C|U|U|ACAA AGGUUGGC|U CAGAACGG(U UGGAAA)UCG UUCGUA-GA| 3901 GU(A|UAAAG )GUAUAAGCC AGCUUAACUG CAAGAC(AUA CAA)GUCAAG CAGAGAC(GA 3961 AA)GU-CGGU |CUUAGUGAU CCGGUGGUUC UG(UGUGGA) AGG|GCCAUC GCUCAAA|GG 4021 AUAAAAGGUA CCC|CGGG|G AUAACAG|GC UGA--UCUCC CCCAAGA(G- CUC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GGAG 4141 C---A)-GGU CCCAAGGGU| AUGGC(UGUU C)GC-CAUUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GCCGUG G-G|CG-UAA 4261 GAAGAUU|GA -|AGAGAUU- UGA------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGUUGA|ACA AACCACUGGU GUAGCUGU|U GUUCU(GC-C A-)AGAGCA- UCGCAGCGUA 4381 GCU-AAGUUU GGAAAGGAUA AACGCU(GAA AGCAUCUA)A GCGUGAAGCC AACUCU|AAG 4441 AUGAAUCUUC U|CU|----- -(------)- --------A- -AGC|-UC|U CUAG-(AAGA 4501 CU-A)CUAGU -UUGAUAG|G CUGG|GUGUG -UAAUGGAU- -(GAAA-)-- GUCCU|UU-A 4561 GCUG|A|CCA GUACUAAUA- GAGCGUUUG| GCUUAU-CUU U-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.hyointes 4759 bp RNA RNA 11-JAN-191 DEFINITION Campylobacter hyointestinali. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter hyointestinali. ORGANISM Campylobacter hyointestinali. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X67761 LOCUS CH23S 805 bp DNA BCT 13-DEC-1993 DEFINITION C.hyointestinalis 23S rRNA gene ACCESSION X67761 KEYWORDS 23S ribosomal RNA; ribosomal RNA. SOURCE Campylobacter hyointestinalis ORGANISM Campylobacter hyointestinalis Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic/microaerophilic, motile, helical/vibrioid bacteria. REFERENCE 1 (bases 1 to 805) AUTHORS Van Camp,G. TITLE Direct Submission JOURNAL Submitted (19-OCT-1992) to the EMBL/GenBank/DDBJ databases. G. Van Camp, University of Antwerp (UIA), Dept of Biochemistry, Universiteitsplein 1, B-2610 Antwerpen, BELGIUM STANDARD full automatic REFERENCE 2 (bases 1 to 805) AUTHORS Van Camp,G., Van de Peer,Y., Neefs,J.M., Vandamme,P. and De Wachter,R. TITLE Presence of internal transcribed spacers in the 16S and 23S ribosomal RNA genes of Campylobacter JOURNAL Syst. Appl. Microbiol. 16, 361-368 (1993) STANDARD full automatic FEATURES Location/Qualifiers source 1..805 /organism="Campylobacter hyointestinalis" /strain="LMG 2817" rRNA <1..>805 /product="23S ribosomal RNA" BASE COUNT 237 a 147 c 206 g 206 t 9 others ORIGIN BASE COUNT 237 a 147 c 206 g 206 t 3963 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ 1201 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 1381 ~~~~~~~~~) ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|~~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~GC(GUAAUA )GC|UCACUG GU-----CUA GU-GAU-UC- -UGC|GCGGA AAAU-AUAA- 1861 CGGGGCU-AA AAUGA-G|U| ACCGAAGCU| UUAG|acuua guu----(uu u--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -aacuaagu- GG-UAGGAGA G|-----CGU 2221 U-CUA-UU-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- -CA-GCGu-U 2341 GAAGGUA-U- A-CC(GGUAA -)GGA--GUG CUGG|AGCGG A-UAGAAGUG AGCAUGC-AG 2401 GC|AUG-AGU A--GCGAUAA UCUANG(UGA GAAU)CCUAG A|CNCC-GAA AACCCAAGGU 2461 UUCCUA-CNC GAUN-(CUCG U)CA|U-CGU AGGGUUAGU| CGG|G-UCCU AAGCAAAGUC 2521 C(NAAA)-n- GG-U-AUGCG AUGG-AAAAU NGG-(UU-AA UAUU)C-CAA U|AC|ca-a- 2581 uu-auu-aug ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -----ugcga u------gga a--gga-cgc uuaaaguua- gugg-a-|gc u-agc(gg-- 2761 auggaa-gu- --)gc-uagu -|cuaa---- ---------- ---gggu-gu aggu------ 2821 --ugagu-ua uagg(ca-aa -u-)cc|g-- uaacucuuua ---------- -ucc-gagac 2881 cua-aaag|g cu-|------ -caugangcu c(-uucg--) gaguagauug ------agaa 2941 --uccau-ga uacu-auc-| gagccaagaa a-aguuuc-u aaguuu---- ------ag-u 3001 -aauaa--uu g|C|CCGUAC CGUAAACC(G ACACA)GG|U GG-GUGGGA- U-(GAGUA)U 3061 UCUAAGGCGC ||GUGGAAGA ACUCUCUUU- ---------- ----AAGGAA CUCUGCAAAA 3121 UAGCACCGUA UC(-UUCG)G UAUAAGGUGU |GCCU---aa -cuuuguauu a-------ag 3181 a(-uuuac)u cccaaa---- ---gcaaag- a---agg-U| U(ACA)ACAA AGAGUCC-CU 3241 CC|CGACU-- ---GU(UUAC CAUAA)ACAC AGCACUCUG| CUAACUC(GU AA------)G 3301 AGGAUGU-AU AGGGUGUGA- NGCCUGCCCG GU|GCUC-GA A-GGUUAAUU GAUGAUGUUA 3361 GC-------- (u-au-)--- --------GC GA-AGCAUUU GAUCGAAGCC |C~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.fetus.1 4759 bp RNA RNA 11-JAN-191 DEFINITION Campylobacter fetus. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter fetus. ORGANISM Campylobacter fetus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X67762 LOCUS CF23S 930 bp DNA BCT 13-DEC-1993 DEFINITION C.fetus 23S rRNA gene ACCESSION X67762 KEYWORDS 23S ribosomal RNA; ribosomal RNA. SOURCE Campylobacter fetus ORGANISM Campylobacter fetus Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic/microaerophilic, motile, helical/vibrioid bacteria. REFERENCE 1 (bases 1 to 930) AUTHORS Van Camp,G. TITLE Direct Submission JOURNAL Submitted (19-OCT-1992) to the EMBL/GenBank/DDBJ databases. G. Van Camp, University of Antwerp (UIA), Dept of Biochemistry, Universiteitsplein 1, B-2610 Antwerpen, BELGIUM STANDARD full automatic REFERENCE 2 (bases 1 to 930) AUTHORS Van Camp,G., Van de Peer,Y., Neefs,J.M., Vandamme,P. and De Wachter,R. TITLE Presence of internal transcribed spacers in the 16S and 23S ribosomal RNA genes of Campylobacter JOURNAL Syst. Appl. Microbiol. 16, 361-368 (1993) STANDARD full automatic FEATURES Location/Qualifiers source 1..930 /organism="Campylobacter fetus" /strain="LMG 6442" /sub_strain="fetus" rRNA <1..>930 /product="23S ribosomal RNA" BASE COUNT 289 a 158 c 225 g 254 t 4 others ORIGIN BASE COUNT 289 a 158 c 225 g 254 t 3833 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ 1201 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 1381 ~~~~~~~~~) ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|~~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)A|GAA 1801 AGC(GUAAUA )GC|UCACUG GU-----CUA GU-GAU-UC- -UGC|GCGGA AAAU-AUAA- 1861 CGGGGCU-AA AAUGA-G|U| ACCGAAGCU| UUAG|acuug cacuuaa(uu cuaauuauaa 1921 auuuggcuau gagcuuuuaa guuauauuuc ucauaauuua auugcacuca uauaaauuaa 1981 auuaugagaa aauaguuuag cuaaaauuag aaguaauuag aauua----- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- agugcaagu- GG-UAGGAGA G|-----CGU 2221 U-CUA-UU-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- -CA-GCGu-U 2341 GAAGGUA-U- A-CC(GGUAA -)GGA--GUG CUGG|AGCGG A-UAGAAGUG AGCAUGC-AG 2401 GC|AUG-AGU A--GCGAUAA UUNAUG(UGA GAAU)CAUCA A|CNCC-NNA AACCCAAGGU 2461 UUCCUA-CGC GAUG-(CUCG U)CA|U-CGU AGGGUUAGU| CGG|G-UCCU AAGCAAAGUC 2521 C(GAAA)-g- GGGU-AUGCG AUGG-AAAAU UGG-(UU-AA UAUU)C-CAA U|AC|ca-a- 2581 uu-auu-aug ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -----ugcga u------gga a--gga-cgc uuaaaguua- gugg-a-|gc u-agc(gg-- 2761 auggaa-gu- --)gc-uagu -|cuaa---- ---------- ---gggu-gu aggu------ 2821 --ugagu-ua uagg(ca-aa -u-)cc|g-- uaauucuuua ---------- -ucc-gagac 2881 cua-aaag|g cu-|------ -caugacgcu c(-uucg--) gaguagauug ------agaa 2941 --uccau-ga uacu-auc-| gagcuaagaa a-aguuuc-u aaguuu---- ------ag-u 3001 -aauaa--uu g|C|CCGUAC CGUAAACC(G ACACA)GG|U GG-GUGGGA- U-(GAGUA)U 3061 UCUAAGGCGC ||GUGGAAGA ACUCUCUUU- ---------- ----AAGGAA CUCUGCAAAA 3121 UAGCACCGUA UC(-UUCG)G UAUAAGGUGU |GCCU---aa -cuuuguauu a----agauu 3181 c(-acucc)c aaa------- ---gcaaag- a---agg-U| U(ACA)ACAA AGAGUCC-CU 3241 CC|CGACU-- ---GU(UUAC CAUAA)ACAC AGCACUCUG| CUAACAC(GU AA------)G 3301 UGGAUGU-AU AGGGUGUGA- CGCCUGCCCG GU|GCUC-GA A-GGUUAAUU GAUGAUGUUA 3361 GC-------- (u-au-)--- --------GC GA-AGCAUUU GAUCGAAGCC |C~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.fetus.2 4759 bp RNA RNA 11-JAN-191 DEFINITION Campylobacter fetu. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter fetu. ORGANISM Campylobacter fetu. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X67773 LOCUS CFV23S 927 bp DNA BCT 13-DEC-1993 DEFINITION C.fetus venerealis 23S rRNA gene ACCESSION X67773 KEYWORDS 23S ribosomal RNA; ribosomal RNA. SOURCE Campylobacter fetus ORGANISM Campylobacter fetus Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic/microaerophilic, motile, helical/vibrioid bacteria. REFERENCE 1 (bases 1 to 927) AUTHORS Van Camp,G. TITLE Direct Submission JOURNAL Submitted (19-OCT-1992) to the EMBL/GenBank/DDBJ databases. G. Van Camp, University of Antwerp (UIA), Dept of Biochemistry, Universiteitsplein 1, B-2610 Antwerpen, BELGIUM STANDARD full automatic REFERENCE 2 (bases 1 to 927) AUTHORS Van Camp,G., Van de Peer,Y., Neefs,J.M., Vandamme,P. and De Wachter,R. TITLE Presence of internal transcribed spacers in the 16S and 23S ribosomal RNA genes of Campylobacter JOURNAL Syst. Appl. Microbiol. 16, 361-368 (1993) STANDARD full automatic FEATURES Location/Qualifiers source 1..927 /organism="Campylobacter fetus" /strain="LMG 6570" /sub_strain="ssp. venerealis" rRNA <1..>907 /product="23S ribosomal RNA" BASE COUNT 287 a 159 c 227 g 253 t 1 others ORIGIN BASE COUNT 287 a 159 c 227 g 253 t 3833 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ 1201 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 1381 ~~~~~~~~~) ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|~~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~GC(GUAAUA )GC|UCACUG GU-----CUA GU-GAU-UC- -UGC|GCGGA AAAU-AUAA- 1861 CGGGGCU-AA AAUGA-G|U| ACCGAAGCU| UUAG|acuug cacuuaa(uu cuaauuauaa 1921 auuuggcuaa gagcuuuuaa guuauauuuc ucauaauuua auugcacuca uauaaauuaa 1981 auuaugagaa a-auaguuua gcuaaaauaa uuagaaguaa uuagaa---- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)-uua agugcaagu- GG-UUGGAGA G|-----CGU 2221 U-CUA-UU-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- -CA-GCGu-U 2341 GAAGGUA-U- A-CC(GGUAA -)GGA--GUG CUGG|AGCGG A-UAGAAGUG AGCAUGC-AG 2401 GC|AUG-AGU A--GCGAUAA UUGAUG(UGA GAAU)CAUCA A|CGCC-GGA AACCCAAGGU 2461 UUCCUA-CGC GAUG-(CUCG U)CA|U-CGU AGGGUUAGU| CGG|G-UCCU AAGCAAAGUC 2521 C(GAAA)-g- GG-N-AUGCG AUGG-AAAAU UGG-(UU-AA UAUU)C-CAA U|AC|ca-a- 2581 uu-auu-aug ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -----ugcga u------gga a--gga-cgc uuaaaguua- gugg-a-|gc u-agc(gg-- 2761 auggaa-gu- --)gc-uagu -|cuaa---- ---------- ---gggu-gu aggu------ 2821 --ugagu-ua uagg(ca-aa -u-)cc|g-- uaacucuuua ---------- -ucc-gagac 2881 cua-aaag|g cu-|------ -caugacgcu c(-uucg--) gaguagauug ------agaa 2941 --uccau-ga uacu-auc-| gagccaagaa a-aguuuc-u aaguuu---- ------ag-u 3001 -aauaa--uu g|C|CCGUAC CGUAAACC(G ACACA)GG|U GG-GUGGGA- U-(GAGUA)U 3061 UCUAAGGCGC ||GUGGAAGA ACUCUCUUU- ---------- ----AAGGAA CUCUGCAAAA 3121 UAGCACCGUA UC(-UUUG)G UAUAAGGUGU |GCCU---aa -cuuuguauu a-------ag 3181 a(-uucac)u cccaaa---- ---gcaaag- a---agg-U| U(ACA)ACAA AGAGUCC-CU 3241 CC|CGACU-- ---GU(UUAC CAUAA)ACAC AGCACUCUG| CUAACAC(GU AA------)G 3301 UGGAUGU-AU AGGGUGUGA- CGCCUGCCCG GU|GCUC-GA A-GGUUAAUU GAUGAUGUUA 3361 GC-------- (u-au-)--- --------GC GA-AGCAUUU GAUCGAAGCC |C~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.mucosa.1 4759 bp RNA RNA 11-JAN-191 DEFINITION Campylobacter mucosalis. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter mucosalis. ORGANISM Campylobacter mucosalis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X67760 LOCUS CM23S 823 bp DNA BCT 13-DEC-1993 DEFINITION C.mucosalis 23S rRNA gene ACCESSION X67760 KEYWORDS 23S ribosomal RNA; ribosomal RNA. SOURCE Campylobacter mucosalis ORGANISM Campylobacter mucosalis Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic/microaerophilic, motile, helical/vibrioid bacteria. REFERENCE 1 (bases 1 to 823) AUTHORS Van Camp,G. TITLE Direct Submission JOURNAL Submitted (19-OCT-1992) to the EMBL/GenBank/DDBJ databases. G. Van Camp, University of Antwerp (UIA), Dept of Biochemistry, Universiteitsplein 1, B-2610 Antwerpen, BELGIUM STANDARD full automatic REFERENCE 2 (bases 1 to 823) AUTHORS Van Camp,G., Van de Peer,Y., Neefs,J.M., Vandamme,P. and De Wachter,R. TITLE Presence of internal transcribed spacers in the 16S and 23S ribosomal RNA genes of Campylobacter JOURNAL Syst. Appl. Microbiol. 16, 361-368 (1993) STANDARD full automatic FEATURES Location/Qualifiers source 1..823 /organism="Campylobacter mucosalis" /strain="LMG 7794" rRNA <1..>823 /product="23S ribosomal RNA" BASE COUNT 242 a 150 c 213 g 202 t 16 others ORIGIN BASE COUNT 242 a 150 c 213 g 202 t 3952 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ 1201 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 1381 ~~~~~~~~~) ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|~~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~CU|U (UAA)A|GAA 1801 AGC(GUAACA )GC|UCACUG GU-----CUA GU-GAU-UC- -UGC|GCGGA AAAU-AUAA- 1861 CGGGGCU-AA GAUGU-A|C| ACCGAAGCU| UUAG|auuca auu----(uu u--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -aauugagu- GG-UAGGAGA G|-----CGU 2221 U-CUA-UU-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- -CA-GCGu-U 2341 GAAGGUA-U- A-CC(GGUAA -)GGA--GUG CUGG|AGCGG A-UAGAAGUG AGCAUGC-AG 2401 GC|AUG-AGU A--GCGAUAA UUAAGG(UGA GAAU)CCUUA A|CNCC-GAA AACCCAAGGU 2461 UUCCUA-CNC NAUN-(CUCG U)CA|U-CGU AGGGUUAGU| CGG|G-UCCU AAGUCGAGAC 2521 U(GAAA)-a- NUNU-AGACN AUNG-CAAAU NGG-(UU-AA UAUU)C-CAA U|AC|ca-a- 2581 ca-uau-aag ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -----cgcga u------gug g--gga-cgc auagaguua- gucg-a-|gc u-cac(ug-- 2761 auggaa-ua- --)gu-gggu -|cgaa---- ---------- ---ggau-gu aggu------ 2821 --uguua-ag uagg(ca-aa -u-)cc|g-- cuuaacguua ---------- gacc-gagau 2881 cuu-acag|g cu-|------ -cuugacacu c(-uucg--) gaggagaugg ------agaa 2941 --ucgau-ga uacu-guc-| gugccaagaa a-agccac-u aaguuu---- ------au-u 3001 -auaug--uu g|C|CCGUAC CGUAAACC(G ACACA)GG|U GG-GUGGGA- U-(GAGUA)U 3061 UCUAAGGCGC ||GUGGAAGA ACCCUCUUU- ---------- ----AAGGAA CUCUNNAAAA 3121 UAGNACCGNA UN(-UUCG)G UAUAAGGUGU |GCCU---ac -uuugguaua g--aaacuug 3181 c(--uuu-)g caaaag---- ---gcugaa- g---agg-U| U(GNA)ANAA AGAGUCC-CU 3241 CC|CGACU-- ---GU(UUAC CAAAA)ACAC AGCACUUUG| CUAACAC(GU AA------)G 3301 UGGAUGU-AU AAGGUGUGA- CGCCUACCCG AU|GCUC-GA A-GGUUAAUU GAUGAUGUCA 3361 GC-------- (g-caa)--- --------GC GA-AGCAUUU GAUCGAAGCC |CG~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.mucosa.2 4759 bp RNA RNA 11-JAN-191 DEFINITION Campylobacter mucosalis. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter mucosalis. ORGANISM Campylobacter mucosalis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X80636 LOCUS CM23SRIBR 805 bp DNA BCT 22-MAR-1995 DEFINITION C.mucosalis gene for 23S ribosomal RNA (fragment). ACCESSION X80636 KEYWORDS 23S ribosomal RNA. SOURCE Campylobacter mucosalis. ORGANISM Campylobacter mucosalis Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic/microaerophilic, motile, helical/vibrioid bacteria. REFERENCE 1 (bases 1 to 805) AUTHORS Bastyns,K., Chapelle,S., Lemmens,C., Van Damme,P., Goossens,H. and De Wachter,R. TITLE Species -specific detection of campylobacteria important in veterinary medicine by PCR amplification of 23S rRNA fragments JOURNAL Unpublished REFERENCE 2 (bases 1 to 805) AUTHORS Bastyns,K. TITLE Direct Submission JOURNAL Submitted (22-JUL-1994) to the EMBL/GenBank/DDBJ databases. K. Bastyns, University of Antwerpen (UIA), Dept of Biochemie, Building T, Universiteitsplein 1, 2610 Wilrijk, BELGIUM REFERENCE 3 (bases 1 to 805) AUTHORS Bastyns,K., Chapelli,S., Vandamme,P., Goossens,H. and De Wacheter,R. TITLE Species-specific detection of campylobacters important in veterinary medicine by PCR amplification of 23S rDNA areas JOURNAL Syst. Appl. Microbiol. 17, 563-568 (1994) COMMENT NCBI gi: 735955 FEATURES Location/Qualifiers source 1..805 /organism="Campylobacter mucosalis" /strain="LMG 6448T" rRNA <1..>805 /note="positions 1 and 805 of the partial 23S rDNA fragment correspond to position 1060 and 1935 in the E.coli 23S rDNA gene" /product="23S ribosomal RNA" BASE COUNT 226 a 158 c 224 g 194 t 3 others ORIGIN BASE COUNT 226 a 158 c 224 g 194 t 3957 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ 1201 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 1381 ~~~~~~~~~) ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|~~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~gau-uc- -UGC|GCGGA AAAU-AUAA- 1861 CGGGGCU-AA AAUGA-G|U| ACCGAAGCU| UUAG|acuua g------(uu uua------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ---cuaagu- GG-UAGGAG- -|-----CGU 2221 U-CUA-UU-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- -CA-GCGU-U 2341 GAAGGUG-U- A-CC(GGUAA -)GGA--GCG CUGG|AGCGG A-UAGAAGUG AGCAUGC-AG 2401 GC|AUG-AGU A--GCGAUAA UUGGGG(UGA GAAU)CCCCA A|CGCC-GUA ARCCCAAGGU 2461 UUCCUA-CGC GAUG-(CUCG U)CA|U-CGU AGGGUUAGC| CGG|G-UCCU AAGCAAAGUC 2521 C(GAAA)-G- GGGU-AUGCG AUGG-AAAAU UGG-(UU-AA UAUU)C-CAA U|GC|ca-a- 2581 ca-uua-uug ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -----ugcga u------gga a--gga-cgc uuagaguua- aagg-a-|gc c-agc(ug-- 2761 auggaa-gu- --)gc-uggu -|cgaa---- ---------- ---aggu-gu aggu------ 2821 --ugagu-ua cagg(ca-aa -u-)cc|g-- uaacucuuu- ---------- aucc-gagac 2881 ccc-acag|g cg-|------ -uuugaaguu c(-uucg--) gaauggauga ------cgaa 2941 --uccuu-ga uacu-guc-| gagccaagaa a-aguuuc-u aaguuu---- ------ag-a 3001 -uaaug--uu g|C|CCGUAC CGUAAACC(G ACACA)GG|U GG-GUGGGA- U-(GAGUA)U 3061 UCUAAGGCGC ||GUGGAAGA ACUCUCUUC- ---------- ----AAGGAA CUCUGCAAAA 3121 UAGCACCGUA UC(-UUCG)G UAUAAGGUGU |GCCU---aa -cuuugu--- ----ga-agg 3181 a(-uuuac)u ccguaa---- ---gcauug- a---agg-U| U(ACA)ACAA AGAGUCC-CU 3241 CC|CGACU-- ---GU(UUAC CAAAA)ACAC AGCACUCUG| CUAACUC(GU AA------)G 3301 AGGAUGU-AU AGGGUGUGA- CGCCUGCCCG GU|GCUC-GA A-GGUUAAUU GAUGGGGUYA 3361 GCA------- (g-yaa)--- -------uGC GA-AGCUCUU GAUCGAAGCC |CGAGUAAAC 3421 |-GGC|cGCC GU(AACUAUA )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.concisus 4759 bp RNA RNA 11-JAN-191 DEFINITION Campylobacter concisus. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter concisus. ORGANISM Campylobacter concisus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X67759 LOCUS CC23S 816 bp DNA BCT 13-DEC-1993 DEFINITION C.concisus 23S rRNA gene ACCESSION X67759 KEYWORDS 23S ribosomal RNA; ribosomal RNA. SOURCE Campylobacter concisus ORGANISM Campylobacter concisus Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic/microaerophilic, motile, helical/vibrioid bacteria. REFERENCE 1 (bases 1 to 816) AUTHORS Van Camp,G. TITLE Direct Submission JOURNAL Submitted (19-OCT-1992) to the EMBL/GenBank/DDBJ databases. G. Van Camp, University of Antwerp (UIA), Dept of Biochemistry, Universiteitsplein 1, B-2610 Antwerpen, BELGIUM STANDARD full automatic REFERENCE 2 (bases 1 to 816) AUTHORS Van Camp,G., Van de Peer,Y., Neefs,J.M., Vandamme,P. and De Wachter,R. TITLE Presence of internal transcribed spacers in the 16S and 23S ribosomal RNA genes of Campylobacter JOURNAL Syst. Appl. Microbiol. 16, 361-368 (1993) STANDARD full automatic FEATURES Location/Qualifiers source 1..816 /organism="Campylobacter concisus" /strain="LMG 7788" rRNA <1..>816 /product="23S ribosomal RNA" BASE COUNT 231 a 156 c 219 g 205 t 5 others ORIGIN BASE COUNT 231 a 156 c 219 g 205 t 3948 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ 1201 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 1381 ~~~~~~~~~) ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|~~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~CCU|U (UAA)A|GAA 1801 AGC(GUAAUA )GC|UCACUG GU-----CUA GU-GAU-UC- -UGC|GCGGA AAAU-AUAA- 1861 CGGGGCU-AA AAUGA-G|U| ACCGAAGCU| UUAG|acuua g------(uu uua------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ---cuaagu- GG-UAGGAGA G|-----CGU 2221 U-GUA-UU-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-GCGU-U 2341 GAAGGUA-U- A-CC(GGUAA -)GGA--GUG CUGG|AGCGA A-UACAAGUG AGCAUGC-AG 2401 GC|AUG-AGU A--GCGAUAA UUGGGG(UGA GAAU)CCCCA A|CNCC-GUA AACCCAAGGU 2461 UUCCUA-CNC GAUN-(CUCG U)CA|U-CGU AGGGUUAGU| UGG|G-UCCU AANCAAAGUC 2521 C(GAAA)-G- GGGU-AUGCG AUGG-AAAAU UGG-(UU-AA UAUU)C-CAA U|Nc|ca-a- 2581 cu-aua-aug ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -----ugcga u------gga a--gga-cgc uuagaguua- agca-a-|gc u-agc(gg-- 2761 auggua-gu- --)gc-uagu -|cgaa---- ---------- ---aggu-gu aggu------ 2821 --uaaga-uc cagg(ca-aa -u-)cc|g-- gaucuuuuua ---------- agcc-gagac 2881 ccc-acag|g cg-|------ -uuugaaguu c(-uucg--) gaauggauag ------cgaa 2941 --uugcc-ga uacu-guc-| gagccaagaa a-aguuuc-u aaguuu---- ------ag-u 3001 -uauag--uu g|C|CCGUAC CGUAAACC(G ACACA)GG|U GG-GUGGGA- U-(GAGUA)U 3061 UCUAAGGCGC ||GUGGAAGA ACUCUCUUC- ---------- ----AAGGAA CUCUGCAAAA 3121 UAGCACCGUA UC(-UUCG)G UAUAAGGUGU |GCCU---aa -cuuugug-- -----a-agg 3181 a(-uuuac)u ccguaa---- ---gcauug- a---agg-U| U(ACA)ACAA AGAGUCC-CU 3241 CC|CGACU-- ---GU(UUAC CAAAA)ACAC AGCACUCUG| CUAACUC(GU AA------)G 3301 AGGAUGU-AU AGGGUGUGA- CGCCUGCCCG GU|GCUC-GA A-GGUUAAUU GAUGACGUUA 3361 GC-------- (u-cu-)--- --------GC GA-AGCGUUU GAUCGAAGCC |CG~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.s.bubulu 4759 bp RNA RNA 11-JAN-191 DEFINITION Campylobacter sputorum bubulus. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter sputorum bubulus. ORGANISM Campylobacter sputorum bubulus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X67772 LOCUS CSB23S 780 bp DNA BCT 13-DEC-1993 DEFINITION C.sputorum bubulus 23S rRNA gene ACCESSION X67772 KEYWORDS 23S ribosomal RNA; ribosomal RNA. SOURCE Campylobacter sputorum ORGANISM Campylobacter sputorum Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic/microaerophilic, motile, helical/vibrioid bacteria. REFERENCE 1 (bases 1 to 780) AUTHORS Van Camp,G. TITLE Direct Submission JOURNAL Submitted (19-OCT-1992) to the EMBL/GenBank/DDBJ databases. G. Van Camp, University of Antwerp (UIA), Dept of Biochemistry, Universiteitsplein 1, B-2610 Antwerpen, BELGIUM STANDARD full automatic REFERENCE 2 (bases 1 to 780) AUTHORS Van Camp,G., Van de Peer,Y., Neefs,J.M., Vandamme,P. and De Wachter,R. TITLE Presence of internal transcribed spacers in the 16S and 23S ribosomal RNA genes of Campylobacter JOURNAL Syst. Appl. Microbiol. 16, 361-368 (1993) STANDARD full automatic FEATURES Location/Qualifiers source 1..780 /organism="Campylobacter sputorum" /strain="biovar bubulus;LMG 6447" rRNA <1..>780 /product="23S ribosomal RNA" BASE COUNT 225 a 145 c 210 g 198 t 2 others ORIGIN BASE COUNT 225 a 145 c 210 g 198 t 3981 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ 1201 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 1381 ~~~~~~~~~) ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|~~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~GC(GUAAUA )GC|UCACUG GU-----CUA GU-GAU-UU- -UGC|GCGGA AAAU-AUAA- 1861 CGGGGCU-AA AAUAA-G|U| ACCGAAGUC| GUAG|gcuug a------(uu ua-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ---ucaagc- GG-UAGGAGA G|-----CGU 2221 U-GCA-UU-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- -CA-GCGu-U 2341 GAAGGUG-U- A-CC(GGUAA -)GGA--GCG CUGG|AGCGG A-UCGAAGUG AGCAUGC-AG 2401 GC|AUG-AGU A--GCGAUAA UUAAUG(UGA GAAU)CAUUA A|CGCC-GUA AACCCAAGGU 2461 UUCCUA-CGC GAUG-(CUCG U)CA|U-CGU AGGGUUAGU| CGG|G-UCCU AANCAAAGUC 2521 C(GAAA)-n- GG-U-AUGCG AUGG-AAAAU UGG-(UU-AA UAUU)C-CAA U|AC|cu-u- 2581 ug-auu-aug ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -----ugcga u------gga a--gga-cgc uuaaagcua- gugg-g-|gc u-aac(ug-- 2761 auggaa-ua- --)gu-uagu -|cuaa---- ---------- ---ggau-gu aggu------ 2821 --ugagu-ua uagg(ca-aa -u-)cc|g-- uaacucuuua ---------- -ucu-gaaau 2881 cuu-aaag|g cu-|------ -uacaaaacu c(-uucg--) gaguagcgua ------agaa 2941 --cccau-ga ugcu-auc-| gagccaagaa a-aguuuc-u aaguuu---- ------ag-u 3001 -aauca--aa g|C|CCGUAC CGUAAACC(G ACACA)GG|U GG-GUGGGA- U-(GAGUA)U 3061 UCUAAGGCGC ||GUGGAAGA ACUCUCUUU- ---------- ----AGGGAA CUCUGCAAAA 3121 UAGCACCGUA UC(-UUCG)G UAUAAGGUGU |GCCU----- ---------- --accagggu 3181 -(-guuaa)a gcccuag--- ---------- ----ugg-U| U(ACA)ACAA AGAGUCC-CU 3241 CC|CGACU-- ---GU(UUAC CAAAA)ACAC AGCACUCUG| CUAACAC(GU AA------)G 3301 UGGAUGU-AU AGGGUGUGA- CGCCUGCCCG GU|GCUC-GA A-GGUUAAUU GAUGGGGUUA 3361 GC-------- (a-uua)--- --------GC GA-AGCUCUU G~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.s.fecali 4759 bp RNA RNA 11-JAN-191 DEFINITION Campylobacter sputorum fecalis. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter sputorum fecalis. ORGANISM Campylobacter sputorum fecalis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X67758 LOCUS CSF23S 793 bp DNA BCT 13-DEC-1993 DEFINITION C.sputorum fecalis 23S rRNA gene ACCESSION X67758 KEYWORDS 23S ribosomal RNA; ribosomal RNA. SOURCE Campylobacter sputorum ORGANISM Campylobacter sputorum Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic/microaerophilic, motile, helical/vibrioid bacteria. REFERENCE 1 (bases 1 to 793) AUTHORS Van Camp,G. TITLE Direct Submission JOURNAL Submitted (19-OCT-1992) to the EMBL/GenBank/DDBJ databases. G. Van Camp, University of Antwerp (UIA), Dept of Biochemistry, Universiteitsplein 1, B-2610 Antwerpen, BELGIUM STANDARD full automatic REFERENCE 2 (bases 1 to 793) AUTHORS Van Camp,G., Van de Peer,Y., Neefs,J.M., Vandamme,P. and De Wachter,R. TITLE Presence of internal transcribed spacers in the 16S and 23S ribosomal RNA genes of Campylobacter JOURNAL Syst. Appl. Microbiol. 16, 361-368 (1993) STANDARD full automatic FEATURES Location/Qualifiers source 1..793 /organism="Campylobacter sputorum" /strain="biovar fecalis;LMG 6617" rRNA <1..>793 /product="23S ribosomal RNA" BASE COUNT 230 a 149 c 207 g 198 t 9 others ORIGIN BASE COUNT 230 a 149 c 207 g 198 t 3975 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ 1201 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 1381 ~~~~~~~~~) ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|~~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 AGC(GUAAUA )GC|UCACUG GU-----CUA GU-GAU-UU- -UGC|GCGGA AAAU-AUAA- 1861 CGGGGCU-AA AAUAA-G|U| ACCGAAGUC| GUAG|gcuug a------(uu ua-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ---ucaagc- GG-UAGGAGA G|-----CGU 2221 U-GCA-UU-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- -CA-GCGu-U 2341 GAAGGUG-U- A-CC(GGUAA -)GGA--GCN CUGG|AGCGG A-UGCAAGUG AGCAUGC-AG 2401 GC|AUG-AGU A--GCGAUAA UUAAUG(UGA GAAU)CAUUA A|CNCC-GUA AACCCAAGGU 2461 UUCCUA-CNC GAUN-(CUCG U)CA|U-CGU AGGGUUAGU| CGG|G-UCCU AANCAAAGUC 2521 C(GAAA)-n- GGGU-AUGCG AUGG-AAAAU UGG-(UU-AA UAUU)C-CAA U|AC|cu-u- 2581 ug-auu-aug ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -----ugcga u------gga a--gga-cgc uuaaagcua- gugg-g-|gc u-aac(ug-- 2761 auggaa-ua- --)gu-uagu -|cuaa---- ---------- ---ggau-gu aggu------ 2821 --ugagu-ua uagg(ca-aa -u-)cc|g-- uaacucuuua ---------- -ucu-gaaau 2881 cuu-naag|g cu-|------ -uacaaaacu c(-uucg--) gaguagcgua ------agaa 2941 --cccau-ga ugcu-auc-| gagccaagaa a-aguuuc-u aaguuu---- ------ag-u 3001 -aauca--aa g|C|CCGUAC CGUAAACC(G ACACA)GG|U GG-GUGGGA- U-(GAGUA)U 3061 UCUAAGGCNC ||NUGGAAGA ACUCUCUUU- ---------- ----AAGGAA CUCUGCAAAA 3121 UAGCACCGUA UC(-UUCG)G UAUAAGGUGU |GCCU----- ---------- --accagggu 3181 -(-guuaa)a gcccuag--- ---------- ----agg-U| U(ACA)ACAA AGAGUCC-CU 3241 CC|CGACU-- ---GU(UUAC CAAAA)ACAC AGCACUCUG| CUAACAC(GU AA------)G 3301 UGGAUGU-AU AGGGUGUGA- CGCCUGCCCG GU|GCUC-GA A-GGUUAAUU GAUGGGGUUA 3361 GC-------- (a-uua)--- --------GC GA-AGCUCUU GAUCGAAGCC |CG~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.s.sputor 4759 bp RNA RNA 11-JAN-191 DEFINITION Campylobacter sputorum sputorum. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter sputorum sputorum. ORGANISM Campylobacter sputorum sputorum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X67768 LOCUS CSS23S 791 bp DNA BCT 13-DEC-1993 DEFINITION C.sputorum sputorum (LMG 7795) 23S rRNA gene ACCESSION X67768 KEYWORDS 23S ribosomal RNA; ribosomal RNA. SOURCE Campylobacter sputorum ORGANISM Campylobacter sputorum Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Aerobic/microaerophilic, motile, helical/vibrioid bacteria. REFERENCE 1 (bases 1 to 791) AUTHORS Van Camp,G. TITLE Direct Submission JOURNAL Submitted (19-OCT-1992) to the EMBL/GenBank/DDBJ databases. G. Van Camp, University of Antwerp (UIA), Dept of Biochemistry, Universiteitsplein 1, B-2610 Antwerpen, BELGIUM STANDARD full automatic REFERENCE 2 (bases 1 to 791) AUTHORS Van Camp,G., Van de Peer,Y., Neefs,J.M., Vandamme,P. and De Wachter,R. TITLE Presence of internal transcribed spacers in the 16S and 23S ribosomal RNA genes of Campylobacter JOURNAL Syst. Appl. Microbiol. 16, 361-368 (1993) STANDARD full automatic FEATURES Location/Qualifiers source 1..791 /organism="Campylobacter sputorum" /strain="biovar sputorum;LMG 7795" rRNA <1..>791 /product="23S ribosomal RNA" BASE COUNT 228 a 149 c 210 g 197 t 7 others ORIGIN BASE COUNT 228 a 149 c 210 g 197 t 3975 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ 1201 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 1381 ~~~~~~~~~) ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|~~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~GC(GUAAUA )GC|UCACUG GU-----CUN NN-NNU-UU- -UGC|GCGGA AAAU-AUAA- 1861 CGGGGCU-AA AAUAA-G|U| ACCGAAGUC| GUAG|gcuug a------(uu ua-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ---ucaagc- GG-UAGGAGA G|-----CGU 2221 U-GCA-UU-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- -CA-GCGU-U 2341 GAAGGUG-U- A-CC(GGUAA -)GGA--GCN CUGG|AGCGG A-UCGAAGUG AGCAUGC-AG 2401 GC|AUG-AGU A--GCGAUAA UUAAUG(UGA GAAU)CAUUA A|CNCC-GUA AACCCAAGGU 2461 UUCCUA-CGC GAUG-(CUCG U)CA|U-CGU AGGGUUAGU| CGG|G-UCCU AAGCAAAGUC 2521 C(GAAA)-g- GG-U-AUGCG AUGG-AAAAU UGG-(UU-AA UAUU)C-CAA U|AC|cu-u- 2581 ug-auu-aug ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -----ugcga u------gga a--gga-cgc uuaaagcua- gugg-g-|gc u-aac(ug-- 2761 auggaa-ua- --)gu-uagu -|cuaa---- ---------- ---ggau-gu aggu------ 2821 --ugagu-ua uagg(ca-aa -u-)cc|g-- uaacucuuua ---------- -ucu-gaaau 2881 cuu-aaag|g cu-|------ -uacaaaacu c(-uucg--) gaguagcgua ------agaa 2941 --cccau-ga ugcu-auc-| gagccaagaa a-aguuuc-u aaguuu---- ------ag-u 3001 -aauca--aa g|C|CCGUAC CGUAAACC(G ACACA)GG|U GG-GUGGGA- U-(GAGUA)U 3061 UCUAAGGCGC ||GUGGAAGA ACUCUCUUU- ---------- ----AAGGAA CUCUGCAAAA 3121 UAGCACCGUA UC(-UUCG)G UAUAAGGUGU |GCCU----- ---------- --accagggu 3181 -(-guuaa)a gcccuag--- ---------- ----agg-U| U(ACA)ACAA AGAGUCC-CU 3241 CC|CGACU-- ---GU(UUAC CAAAA)ACAC AGCACUCUG| CUAACUC(GU AA------)G 3301 AGGAUGU-AU AGGGUGUGA- CGCCUGCCCG GU|GCUC-GA A-GGUUAAUU GAUGGGGUUA 3361 GC-------- (a-uua)--- --------GC GA-AGCUCUU GAUCGAAGCC |CG~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS GRAM+.HIGH 4759 bp RNA RNA 17-JAN-1993 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 4759 others ORIGIN 1 -x~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~-)~|- ~~~~~~~~~~ 181 ~~~~~~|-~~ ~~~(~-~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~--- ---------- ---------- 301 -----~~~~~ ~~~~~~~~~~ ~~~~~~---- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- -----~-~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~|~ ~~-~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---- 721 ---~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~-~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~-- -~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ -~~~-~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| -~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 -~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 -~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~-~ ~~~~~~~~~~ |-~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~-~~~~| ~~~~~~~~~~ 1621 ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~-~~~~~ ~-~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~-~~~ ~----~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~-~- -~~-|~~~~~ ~~~~-~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~|-----~~~ 2221 ~-~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~- ~-~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 2401 ~~|~~~~-~~ ~-~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~-~~ ~~~~~~-~~~ ~~~~|~~~~- 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~------~~~ ~~--~~-~~~ ~~~~~~~~~- ~~~~-~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ---------- --~~~~~~~~ ~~~~~~~~-- 2821 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~----~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 --~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~-~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~- ---~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~---~~~~~ 3301 ~~~~~~~~-~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~-~~ ~-~~-~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~( ~~~)~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ 3721 ~~~~~~|~~~ ~~~-~~~~~~ ~~~~~-~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~-~~-~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~|~|~|~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~---~ ~~~~~~-~~~ 3901 ~|~~(~|~~~ ~~)~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~-~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~~~|~~~~ ~~~~~~~~~| 4021 ~~~~~~~~~~ ~~~~~|~~~~ |~~~~~~-~| ~~~~~--~~~ ~~~~~~~~~( ~~~~~~~~~) 4081 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~|~~~~|~~~ ~~~~~~~~~| ~~~~~(~~~~ 4141 ~~~~~--)-~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ -~~~~~~|~~ ~~~~~~~|~~ 4261 ~~~~~~~~~~ -|~-|~~~~~ -~~~~~~--- ---------- -~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4381 ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 |~~~~~~~~~ ~~~~~|~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~|~~~~~-~ 4501 ~~~~~~-~~~ ~~~~~~~~~~ ~~|~~~~~|~ ~~~~~-~~~~ ~~~~~~~~~~ ~--~~~~~~| 4561 ~~~~|~~~-~ |~~~~~~~~~ ~~~~~~~~-- ~~~|~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~||||| // LOCUS Frankia.1 4759 bp RNA RNA 11-JAN-191 DEFINITION Frankia sp.. ACCESSION No information KEYWORDS No information. SOURCE Frankia sp. ORGANISM Frankia sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: M55343 LOCUS FRARRNA 6481 bp ds-DNA BCT 12-FEB-1991 DEFINITION Frankia sp. 5S, 16S, and 23S ribosomal RNA genes, complete cds. ACCESSION M55343 KEYWORDS 16S ribosomal RNA; 23S ribosomal RNA; 5S ribosomal RNA. SOURCE Frankia sp. (strain CeD) DNA, clone O1RNA1. ORGANISM Frankia sp. Prokaryota; Bacteria; Firmicutes; Endospore-forming rods and cocci; Actinomycetes with multilocular sporangia. REFERENCE 1 (bases 1 to 6481) AUTHORS Normand,P. TITLE ; JOURNAL Unpublished (1990) STANDARD simple staff_review FEATURES Location/Qualifiers promoter 117..146 /note="putative" promoter 248..276 /note="putative" rRNA 528..2039 /gene="16S rRNA" /product="16S ribosomal RNA" rRNA 2451..5549 /gene="23S rRNA" /product="23S ribosomal RNA" rRNA 5618..5736 /gene="5S rRNA" /product="5S ribosomal RNA" terminator 5737..5789 promoter 5841..5869 /note="putative" CDS 5927..6481 /note="open reading frame" /codon_start=1 /partial BASE COUNT 1333 a 1592 c 2268 g 1288 t ORIGIN BASE COUNT 700 a 711 c 1069 g 619 t 1660 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG CCAAGUUAU- --UAAGGGCG CACGGUGGAU 121 G|CCUUGG|C ACCAGG|AG| CC-GAUGAAG GA|CGUG(GG AG-GC-)U|- GCG-AUAUGC 181 CUCGGG|-GA GCU(G-UCAA CCG-)AGCUG UG-AUC-CGA GGAUU|UCCG AAUGGG(GAA 241 A)CCC|GGCA GGG-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- -cuuuaaa)- UCCUGUC-AC CC-GUGCCU( 481 GA-ACACA-- UA)GGG-CAU -GUG--GAG- G-GAAC|GC- GGGGAAGU|G A(AACA)UCU 541 CAUUA-CCCG CAGGAGGAGA AAAC(-AACC --)GUGAU|U CC-GCGAGUA GU(GGUGA)G 601 CGA-AAG-CG GA-ACA-GGC UAAAccagug -ucgugugag agcc-(ggca -)----ggug 661 uugcgaugcu gggguugugg gaucgucca- ------ggu- ggagc(-ugc c-)guuccau 721 c---ggggag ucagaaagag cau-uguu-a ggcGAAg-gu cau(g-cgaa u)g-ggccgc 781 |c(aua)gaG GG(UAAUAGC )CCUGU-Agc c-gaaagcag ugu-uc-cuc ---------- 841 ---------- -ccggacgug uuccc---AA GUAGCACGGA G(CCCGUG-U AA)UUCCGUG 901 UGAAUCU-GG C-GG(GACCA C)CC-GCU-A AGCCUAA--- -AUACUCCCU GGUGACCGAU 961 AGCG-GAC-U AGUACC(GUG A)-GGGA-AA GGUGAAAA-G UACCCC(GG- GA-)GGGGA- 1021 -GUGAAA-UA GUACCUGAAA CCGU-GUGCC UACAA-U-CC GUGGGAGCUG --GA-c---- 1081 --------(- ---ugug--) ---------- ---gUC-UGG UGACCGCGUG CCU(UUU-GA 1141 AG|A)AUGA| -GCCUGCGAG UUUGCGGUG- UGUGGC-GAG GUUAACCC-( --gugu)-GG 1201 G-GUAGCCGU AGC(GAAA-) GCGAGUCC(G AA-GA)GGGC Gu-------- ---------- 1261 ---------- ------u-ga G-UCGCAUGU CCAA-GACCC GAAGC-CGA- GUGA-UCUAC 1321 CCAUGGC|CA GGUUGAAGCG CGGG(UAAG) AC-CGUGUGG AGGACCGAAC C-CACCAGG( 1381 -GUUGAAAA) CCUGG|GGG- AUGAG-CUGU GGGUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 CGGUGAUAGC UGGUUCUCCC CGAAAUGCAU (-UUAG)GUG CAGC|-GUCG CAUGU---U| 1501 -UCU|UGCCG G|AGGUAG|A GC-ACUGG-A UGGCCUA-GG |-GGGCC(ca ca-)AGCUUA 1561 CUGAAGUCAG -CCAAACUCC GAA-UG-|CC G-G-U-A--- agug---aa| GUG-CGGCAG 1621 UGAGAC--UG C-GGGG(GAU AAG)CUUCGU -aGUC-GAGA GGG(-AAACA G-)CCCAGAU 1681 CGCCAGCUAA G-GC|CCCU- AAGCG-UGCG -C-UAA-GUG ------GAAA AGGAUGUG-G 1741 AGUCGCAUA- GACAACCAGG UGGU--GC(U UAGAAGCA)G CCAC-CCU|U (GAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CAA GU-GAU-UC- -CGC|GCCGA CAAU-GUAG- 1861 CGGGGCUCAA GCGCA-C|C| GCCGAAGCU| GCGG|caugc acaaa--(au uu----cccg 1921 gcac-(uuug )-guguccag g--------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---u uugugugug- GG-UAGGGGA G|-----CGU 2221 C-GUG-UG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CGUG-U 2341 GAAGCGG-C- G-GG(-GUGA -)CCC-AGCC GUGG|AUGCC A-UACGAGUG AGAAUGC-AG 2401 GC|AUG-AGU A--GCGAA-U GACGGG(UGA GAAA)CCCGU C|CGCC-GGA UGACCAAGGG 2461 UUCCUG-GGG CAGG-(CUAA U)CC|G-CCC AGGGUGAGU| CGG|G-ACCU AAGGCGAGGC 2521 C(GACA)-G- GCGU-AGUCG AUGG-AUAAC GGG-(UU-GA UAUU)C-CCG U|AC|cg-g- 2581 cg-uug-acg c-ggcca-ug cugaaccugg uu-ugugcua a-----ccau cugaucgg-a 2641 ugugu-cuc( uuc-g)gagg uguguucggg agggugg--- ----gauccc ggcugguagu 2701 aggcaagcga u------ggg g--uga-cga gg-aaggua- gucc-ag|cc c-agg(cg-- 2761 gugguu-gu- --)cc-uggg -|gcaa---- ---------- ---gggu-gu aggac----- 2821 ---gagg-cg uagg(ua-aa -u-)cc|g-- cgucuugugu ---------- gucu-gagac 2881 cug-augc|c ga-|------ -------gcc g(-auug--) cggc------ ------gaag 2941 --ugggu-ga uccu-aug-| cugccgagaa a-agccuc-u a-gcga---- ------gu-g 3001 ucaggg--cc g|c|CCGUAC CCUAAACC(G ACACA)GG|A GG-UCAGGU- A-(GAGAA)U 3061 ACCGAGGCGU ||UCGAGUGA ACUGUGGUU- ---------- ----AAGGAA CUCGGCAAA- 3121 UG-CCCCGUA AC(-UUCG)G -AGAAGGGGG |GCCGU---- -ucuccgugu a------ggg 3181 g(-uuuac)c uccgaa---- --gcgggga- ---GUGG-C| C(GCA)GAGA CCAGGGG-AA 3241 AG|CGACU-- ---GU(UUAC UAAAA)ACAC AGCUCCGUG| CUAAGUC(GU AA------)G 3301 ACGAUGU-AU ACGGAGUGA- CGCCUGCCCG GU|GCUG-GA A-CGUUAAGG GGACGGGUUA 3361 GCuc------ (U-UCG)--- gg------GC GA-AGCUCAG AACUUAAGCG |CCAGUAAAC 3421 |-GGC|GGUG GU(AACUAUA )ACCAUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-CUUUCCC ACUGUCUCAA CCACAGACUC 3541 G|GCGAAAUU |GCAUUAC-G AG(UAAAGAU G)CUCGUUAC GCGCGGC-AG GACGGAAAGA 3601 CCCCG-GG|A CCU-UUACUA U|AGCUUGAU AUU|GGUGUU CGGUUCGGCU UGUGUAGGAU 3661 AGGUGGGAGA CUGUGAAG-- CUAGGAC(GC CA)GUUCUGG UGGAGUCGUU -G-UUGAAAU 3721 ACCACU|CUG G-UCGUACUG GAU-GUCUAA -CCUGGG--- -UCCG(--UG -AUC)-CGGA 3781 UCAGG-GACA GUGUCAGGUG GG-UAGUUUA ACUG(GGG)C GGUU|GCCUC C(UAA-AGGG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGCCUGG(U UGGCAA)UCA GGUGUU-GA| 3901 GU(G|CAAGU )GCACAAGGG AGCUUGACUG UGAGAC(AGA CAU)GUCGAG CAGGUGC(GA 3961 AA)GC-AGGG |ACUAGUGAU CCGGCGGUGG CU(UGUGGA) AGC|GCCGUC GCUCAAC|GG 4021 AUAAAAGGUA CCC|CGGG|G AUAACAG|GC UGA--UCUUG CCCAAGA(G- UCC-AUA)UC 4081 GACGGCA-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GGAG 4141 U---A)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GCCGCG C-G|CG-CAG 4261 GAGACUU|GA -|GAAGGGC- UGU------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGACGG|ACG AACCUCUGGU GUGCCAGU|U GUUCU(GC-C A-)AGGGCA- UGGCUGGUUG 4381 GCU-ACGUUC GGAAGGGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAGCC UGCUUC|GAG 4441 AUGAGGUCUC C|CA|CAGG- -(-GUAG-)- -CCUG--GU- AAGG|-CC|C CCGA-(CUAG 4501 AUGA)UCGGG -UUGAUAG|G CCGG|AGGUG -GAAGUGCG- -(GUGA-)-- CGCAU|GG-A 4561 GCUG|A|CCG GUACUAAUA- GGCCGA-GG| GCUUGU-CUU C-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS Frankia.2 4759 bp RNA RNA 11-JAN-191 DEFINITION Frankia sp.. ACCESSION No information KEYWORDS No information. SOURCE Frankia sp. ORGANISM Frankia sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: M88466 LOCUS FRARGOP 6059 bp ds-DNA BCT 25-SEP-1992 DEFINITION Frankia sp. rRNA operon with 5S, 16S and 23S ribosomal RNA genes. ACCESSION M88466 KEYWORDS 16S ribosomal RNA; 23S ribosomal RNA; 5S ribosomal RNA. SOURCE Frankia sp. (strain AcN14a) DNA. ORGANISM Frankia sp. Prokaryotae; Firmicutes; Thallobacteria; Actinomycetes and related organisms; Actinomycetes with multilocular sporangia. REFERENCE 1 (bases 1 to 6059) AUTHORS Johnson,D.A. and Prud'homme,M. TITLE Analysis of a rRNA operon from Frankia strain AcN14a JOURNAL Thesis (1992) Biology, University of Ottawa STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 599..2107 /product="16S ribosomal RNA" /gene="16S rRNA" /note="putative" rRNA 2529..5632 /product="23S ribosomal RNA" /gene="23S rRNA" /note="putative" rRNA 5706..5825 /product="5S ribosomal RNA" /gene="5S rRNA" /note="putative" BASE COUNT 1237 a 1486 c 2105 g 1231 t ORIGIN BASE COUNT 705 a 713 c 1064 g 622 t 1655 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG CCAAGUUAG- --UAAGGGCG CACGGUGGAU 121 G|CCUUGG|C ACCAGG|AG| CC-GAUGAAG GA|CGUG(GG AG-GC-)U|- GCG-AUAUGC 181 CUCGGG|-GA GCU(G-UCAA CCG-)AGCUG UG-AUC-CGA GGAUU|UCCG AAUGGG(GAA 241 A)CCC|GGCA GGG-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- -cuuuaaa)- UCCUGUC-AC CC-AUGCCU( 481 GA-ACACA-- UA)GGG-CAU -GUG--GAG- G-GAAC|GC- GGGGAAGU|G A(AACA)UCU 541 CAUUA-CCCG CAGGAAGAGA AAAC(-AACC --)GUGAU|U CC-GCGAGUA GU(GGUGA)G 601 CGA-AAG-CG GA-UGA-GGC UAAAccagug -ucgugugau agcc-(ggca -)----ggcg 661 uugcgaugcu gggguugugg gaucguccg- ------gac- gggac(-ugc c-)guuccgu 721 c---ggggag ucagaaagag cgc-uguu-a ggcGAAg-gu cau(g-cgaa u)g-ggccgc 781 |c(aua)gaG GG(UAAUAGC )CCUGU-Agc u-gaaaacag ugu-uc-cuc ---------- 841 ---------- -ccggacgug uuccc---AA GUAGCACGGA G(CCCGUG-A AA)UUCCGUG 901 UGAAUCU-GG C-GG(GACCA C)CC-GCU-A AGCCUAA--- -AUACUCCCU GGUGACCGAU 961 AGCG-GAC-U AGUACC(GUG A)-GGGA-AA GGUGAAAA-G UACCCC(GG- GA-)GGGGA- 1021 -GUGAAA-UA GUACCUGAAA CCGU-GUGCC UACAA-U-CC GUGGGAGCUG --GA-C---- 1081 --------(- ---uucg--) ---------- ---gUC-UGG UGACCGCGUG CCU(UUU-GA 1141 AG|A)AUGA| -GCCUGCGAG UUUGCGAUG- UGUGGC-GAG GUUAACCC-( --gugu)-GG 1201 G-GUAGCCGU AGC(GAAA-) GCGAGUCC(G AA-GA)GGGC GU-------- ---------- 1261 ---------- -----uu-ga G-UCGCAUGU CCAA-GACCC GAAGC-CGA- GUGA-UCUAC 1321 CCAUGGC|CA GGUUGAAGCG CGGG(UAAG) AC-CGUGUGG AGGACCGAAC C-CACCAGG( 1381 -GUUGAAAA) CCUGG|GGG- AUGAG-CUGU GGGUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 CGGUGAUAGC UGGUUCUCCC CGAAAUGCAU (-UUAG)GUG CAGC|-GUCG CAUGU---U| 1501 -UCU|UGCCG G|AGGUAG|A GC-ACUGG-A UGGCCUA-GG |-GGGCC(ac a--)aGCUUA 1561 CUGAAGUCAG -CCAAACUCC GAA-UG-|CC G-G-U-A--- agug---aa| GUG-CGGCAG 1621 UGAGAC--UG C-GGGG(GAU AAG)CUUCGU -AGUC-GAGA GGG(-AAACA G-)CCCAGAU 1681 CGCCAGCUAA G-GC|CCCU- AAGCG-UGCG -C-UAA-GUG ------GAAA AGGAUGUG-G 1741 AGUCGCAUA- GACAACCAGG AGGUUGGC(U UAGAAGCA)G CCAC-CCU|U (GAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CAA GU-GAU-UC- -CGC|GCCGA CAAU-GUAG- 1861 CGGGGCUCAA GCGCA-C|C| GCCGAAGCU| GCGG|cauac gcaugu-(ua g-----ccag 1921 gcauc(uuu- )gauguccag g--------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---u guguguaug- GG-UAGGGGA G|-----CGU 2221 C-GUG-UG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CGUG-U 2341 GAAGCGG-C- G-GG(-GUGA -)CCU-AGUC GUGG|AUGCC A-UACGAGUG AGAAUGC-AG 2401 GC|AUG-AGU A--GCGAA-U GACGGG(UGA GAAA)CCCGU C|CGCC-GGA UGACCAAGGG 2461 UUCCUG-GGG CAGG-(CUAA U)CC|G-CCC AGGGUGAGU| CGG|G-ACCU AAGGCGAGGC 2521 C(GACA)-G- GCGU-AGUCG AUGG-ACAAC GGG-(UU-GA UAUU)C-CCG U|AC|cg-g- 2581 cg-gug-acg c-gccca-ug cugaaccugg u--ugugcua a-----ccau cugaucgg-a 2641 ugugu-cuu( uuc-g)gaga ugugucuggg agggugg--- ----gauccc gcu-gguagu 2701 aggcaagcga u------ggg g--uga-cgc aggagggua- gucc-aa|cc c-agg(cg-- 2761 gugguu-gu- --)cc-uggg -|gcaa---- ---------- ---gggu-gu aggac----- 2821 ---ggug-cg uagg(ua-aa -u-)cc|g-- cguuccaugu ---------- gucu-gagac 2881 cug-augc|c ga-|------ -------gcc g(-auug--) uggc------ ------gaag 2941 --uggau-ga uccc-aug-| cugccgagaa a-agccuc-u a-gcga---- ------gu-g 3001 ucaggg--cc g|c|CCGUAC CCUAAACC(G ACACA)GG|U GG-UCAGGU- A-(GAGAA)U 3061 ACCGAGGCGU ||UCGAGUGA ACUGUGGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGCCCCCGUA AC(-UUCG)G GAGAAGGGGG |GCCGU---- -ucuccgugu a------ggg 3181 a(-cuugc)u uccgua---- --gcgggga- ---GUGG-C| C(GCA)GAGA CCAGGGG-AA 3241 AG|CGACU-- ---GU(UUAC UAAAA)ACAU AGCUCCGUG| CUAAGUC(GU AA------)G 3301 ACGAUGU-AU ACGGAGUGA- CGCCUGCCCG GU|GCUG-GA A-CGUUAAGG GGACGGGUUA 3361 GCuc------ (U-UCG)--- gg------GC GA-AGCUCAG AACUUAAGCG |CCAGUAAAC 3421 |-GGC|GGUG GU(AACUAUA )ACCAUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-CUUUCCC ACUGUCUCAA CCACAGACUC 3541 G|GCGAAAUU |GCAUUAC-G AG(UAAAGAU G)CUCGUUAC GCGCGGC-AG GACGGAAAGA 3601 CCCCG-GG|A CCU-UUACUA U|AGCUUGAU AUU|GGUGUU CGGUUCGGCU UGUGUAGGAU 3661 AGGUGGGAGA CUGUGAAG-- CUGGGAC(GC CA)GUUCUGG UGGAGUCAUU -G-UUGAAAU 3721 ACCACU|CUG G-UCGUACUG GAU-GUCUAA -CCUCGG--- -UCCG(--UG -AUC)-CGGA 3781 UCAGG-GACA GUGUCUGGUG GG-UAGUUUA ACUG(GGG)C GGUU|GCCUC C(UAA-AGAG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGCCUGG(U UGGCAA)UCA GGUGUU-GA| 3901 GU(G|CAAGU )GCACAAGGG AGCUUGACUG UGAGAC(AGA CAU)GUCGAG CAGGUGC(GA 3961 AA)GC-AGGG |ACUAGUGAU CCGGCGGUGG CU(UGUGGA) AGC|GCCGUC GCUCAAC|GG 4021 AUAAAAGGUA CCC|CGGG|G AUAACAG|GC UGA--UCUUG CCCAAGA(G- UCC-AUA)UC 4081 GACGGCA-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GGAG 4141 U---A)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GCCGCG C-G|CG-CAG 4261 GAGACUU|GA -|GAAGGGC- UGU------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGACGG|ACG AACCUCUGGU GUGCCAGU|U GUUCU(GC-C A-)AGGGCA- UGGCUGGUUG 4381 GCU-ACGUUC GGAAGGGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAGCC UGCUUC|GAG 4441 AUGAGGUCUC C|CA|CAGG- -(-GUAG-)- -CCUG--GU- AAGG|-CC|C CCGA-(CUAG 4501 AUGA)UCGGG -UUGAUAG|G CCGG|AGGUG -GAAGUGCG- -(GUGA-)-- CGCAU|GG-A 4561 GCUG|A|CCG GUACUAAUA- GGCCGA-GG| GCUUGU-CUU C-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS S.galbus 4759 bp RNA RNA 11-JAN-191 DEFINITION Streptomyces galbus. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces galbus. ORGANISM Streptomyces galbus. REFERENCE 1 (bases 1 to 2657) AUTHORS Mehling,A., Wehmeier,U.F. and Piepersberg,W. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X81577 LOCUS SG23SRNA 1101 bp RNA BCT 26-SEP-1994 DEFINITION S.galbus 23S rRNA gene (partial). ACCESSION X81577 KEYWORDS 23S ribosomal RNA; 23S rRNA gene; 5S ribosomal RNA; 5S rRNA gene. SOURCE Streptomyces galbus. ORGANISM Streptomyces galbus Prokaryota; Bacteria; Firmicutes; Streptomycetaceae. REFERENCE 1 (bases 1 to 1101) AUTHORS Mehling,A., Wehmeier,U.F. and Piepersberg,W. TITLE Use of the 'reverse' sequencing primer for random amplified polymorphic DNA (RAPD) fingerprinting assays of actinomycetes JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 1101) AUTHORS Piepersberg,W.M. TITLE Direct Submission JOURNAL Submitted (13-SEP-1994) to the EMBL/GenBank/DDBJ databases. W.M. Piepersberg, Bergische Univ. Gesamthochschule, Wuppertal, Inst. fuer Chemische Mikrobiologie, Gaussstr. 20, 42097 Wuppertal, FRG STANDARD full automatic COMMENT NCBI gi: 550430 FEATURES Location/Qualifiers source 1..1101 /organism="Streptomyces galbus" /strain="DSM40089" rRNA <1..993 /product="23S ribosomal RNA" primer_bind 1..16 rRNA 1080..>1101 /product="5S ribosomal RNA" primer_bind 1087..1101 BASE COUNT 229 a 259 c 360 g 253 t ORIGIN BASE COUNT 211 a 232 c 330 g 220 t 3766 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)-~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ 1201 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~(~~~~~~~ 1261 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 1381 ~~~~~~~~~) ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|~~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~gaa ac(agcuaug )ACCAUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-CUUCUCG ACUGUCUCAA CCAUAGGCCC 3541 G|GUGAAAUU |GCACUAC-G AG(UAAAGAU G)CUCGUUUC GCGCAGC-AG GACGGAAAGA 3601 CCCCG-GG|A CCU-UUACUA C|AGUUUGAU AUU|GGUGUU CGGUUCGGCU UGUGUAGGAU 3661 AGCUGGGAGA CUGUGAAG-- CUCGGAC(GC CA)GUUCGGG UGGAGUCGUC -G-UUGAAAU 3721 ACCAGU|CUG G-UCGUGCUG GAU-GUCUAA -CCUGGG--- -UCCG(--ug -auc)-CGGA 3781 UCAGG-GACA GUGUCUGAUG GG-UAGUUUA ACUG(GGG)C GGUU|GCCUC C(UAA-AGGG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGCCUGG(U UGGCAA)UCA GGUGUU-GA| 3901 GU(G|UAAGU )GCACAAGGG AGCUUGACUG UGAGAC(CGA CGG)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |ACUAGUGAU CCGGCAGUGG CU(UGUGGA) AGC|GCCGUC GCUCAAC|GG 4021 AUAAAAGGUA CCC|CGGG|G AUAACAG|GC UGA--UCUUC CCCAAGA(G- UCC-AUA)UC 4081 GACGGGA-UG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GGAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GCUGUG C-G|CG-UAG 4261 GAGUCUU|GA -|GAAGGGC- UGU------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGACGG|ACG AACCUCUGGU GUGCCAGU|U GUCCU(GC-C A-)AGGGCA- UGGCUGGUUG 4381 GCU-ACGUUC GGGAGGGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAGCC UGCUUC|GAG 4441 AUGAGGACUC C|CA|CCCA- -(CUUGA-)- -UGGG--GU- AAGG|-CU|C CCAG-(UAGA 4501 CG-A)CUGGG -UUGAUAG|G CCGG|AUCUG -GAAGCACG- -(GUAA-)-- CGUGU|GG-A 4561 GGUG|A|CCG GUACUAAUA- GGCCGA-GG| GCUUGU-CCU C-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS S.griseus 4759 bp RNA RNA 11-JAN-191 DEFINITION Streptomyces griseus. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces griseus. ORGANISM Streptomyces griseus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X61478 LOCUS STM16SRNB 6869 bp ds-DNA BCT 19-SEP-1991 DEFINITION S.griseus genes for 16S rRNA, 23S rRNA & 5S rRNA ACCESSION X61478 KEYWORDS 16S ribosomal RNA; 23S ribosomal RNA; 5S ribosomal RNA; rrnE gene. SOURCE Streptomyces griseus DNA. ORGANISM Streptomyces griseus Prokaryota; Bacteria; Firmicutes; Streptomycetaceae. REFERENCE 1 (bases 1 to 6869) AUTHORS Kim,E., Kim,H., Kang,K.H., Kho,Y.H. and Park,Y.H. TITLE Complete nucleotide sequence of a 16S ribosomal RNA gene from Streptomyces griseus subsp. griseus JOURNAL Nucleic Acids Res. 19, 1149-1149 (1991) STANDARD full automatic COMMENT *source: strain=ssp.griseus KCTC 9080; *source: is_macronuclear=N; *source: is_proviral=N; *source: is_germline=N; From EMBL entry SG16SRNA; dated 04-SEP-1991. FEATURES Location/Qualifiers rRNA 1079..2606 /product="16S rRNA" rRNA 2911..6030 /product="23S rRNA" rRNA 6140..6295 /product="5S rRNA" /gene="rrnE" terminator 6267..6311 BASE COUNT 1495 a 1765 c 2296 g 1313 t ORIGIN BASE COUNT 727 a 710 c 1049 g 634 t 1639 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG CCAAGUUUU- --UAAGGGCG CACGGUGGAU 121 G|CCUUGG|C ACCAGG|AA| CC-GAUGAAG GA|CGUG(GG AG-GC-)C|- ACG-AUAGUC 181 CCCGGG|-GA GCU(G-UCAA CCA-)AGCUU UG-AUC-CGG GGGUU|UCCG AAUGGG(GAA 241 A)CCC|GGCA GUC-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --gucaug)- GGCUGUC-AC CC-GCUGCU( 481 GA-ACACA-- UA)GGC-AGU -GUG--GAG- G-GAAC|GA- GGGGAAGU|G A(AACA)UCU 541 CAGUA-CCCU CAGGAAGAGA AAAC(-AACC --)GUGAU|U CC-GGGAGUA GU(GGCGA)G 601 CGA-AAC-UG GA-UGA-GGC CAAAccguau -gcgugugau accc-(ggca -)-------g 661 uugcgcaugc gg-guugugg gaucucucuu ------uca- caguc(-ugc c-)ggcugug 721 a---ggcgag ucagaaaccg uug-augu-a ggcGAAg-ga cau(g-cgaa a)g-guccgg 781 |c(gua)gaG GG(UAAGACC )CCCGU-Agc u-gaaacauu gac-gg-cuc guu------- 841 ---------- ---ugagaga caccc---AA GUAGCACGGG G(CCCGAG-A AA)UCCCGUG 901 UGAAUCU-GG C-GG(GACCA C)CC-GCU-A AGCCUAA--- -AUAUUCCCU GGUGACCGAU 961 AGCG-GA--U AGUACC(GUG A)-GGGA-AU GGUGAAAA-G UACCGC(GG- GA-)GCGGA- 1021 -GUGAAA-UA GUACCUGAAA CCGU-GUGCC UACAA-G-CC GUGGGAGCGu -cgc-uggca 1081 gca-----(- ---cuug--) ------ugcu gucagu--CG UGACUGCGUG CCU(UUU-GA 1141 AG|A)AUGA| -GCCUGCGAG UUAGCGGUG- UGUAGC-GAG GUUAACCC-( --gugu)-GG 1201 G-GAAGCCGU AGC(GAAA-) GCGAGUCC(G AA-CA)GGGC Gg-------- --(------- 1261 ----)----- -----uu-ga G-UUGCACGC UCUA-GACCC GAAGC-GGA- GUGA-UCUAG 1321 CCAUGGG|CA GGUUGAAGCG GAGG(UAAG) AC-UUCGUGG AGGACCGAAC C--ACCAGG( 1381 -GUUGAAAA) CCUGG|GGG- AUGAC-CUGU GGUUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 CCGUGAUAGC UGGUUCUCCC CGAAAUGCAU (-UUAG)GUG CAGC|-GUCG UGUGU---u| 1501 -UCU|UGCCG G|AGGUAG|A GC-ACUGG-A UAGGCGA-UG |-GGCCC(ua cc-)GGGUUA 1561 CUGACCUUAG -CCAAACUCC GAA-UG-|CC G-G-U-A--- agug--aga| GCA-CGGCAG 1621 UGAGAC--UG U-GGGG(GAU AAG)CUCCAU -GGUC-GAGA GGG(-AAACA G-)CCCAGAG 1681 CAUCGACUAA G-GC|CCCU- AAGCG-UACG -C-UAA-GUG ------GGAA AGGAUGUG-G 1741 AGUCGCAGA- GACAACCAGG AGGUUGGC(U UAGAAGCA)G CCAC-CCU|U (GAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CAA GU-GAU-UC- -CGC|GCCGA CAAU-GUAG- 1861 CGGGGCUCAA GCGUA-C|C| GCCGAAGUC| GUGU|cauuc guac---(au gua---uccc 1921 -(caac)-gg ga-------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- guacggaug- GG-UAGGGGA G|-----CGU 2221 C-GUG-UG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --C-CGGG-U 2341 GAAGCAG-C- C-GC(-GGAA -)GCG-AGUU GUGG|ACGGU U-CACGAGUG AGAAUGC-AG 2401 GC|AUG-AGU A--GCGAU-A CACACG(UGA GAAA)CGUGU G|CGCC-GAU UGACUAAGGG 2461 UUCCUG-GGU CAAG-(CUGA U)CU|G-CCC AGGGUAAGU| CGG|G-ACCU AAGGCGAGGC 2521 C(GACA)-G- GCGU-AGUCG AUGG-ACAAC CGG-(UU-GA UAUU)C--GG U|AC|cc-g- 2581 cu-uug-aaa c-gcccagua cugaaucagg cg-augcuaa guccgugaag ccg-----gc 2641 ccga-ucuc( uuc-g)gagu ugagggu-ag ugguggagcc gaugaaccag acuug-uagu 2701 agguaagcga u------ggg g--uga-cgc aggaaggua- gucc-ag|cc c-ggg(cg-- 2761 gugguu-gu- --)cc-cggg -|guaa---- ---------- ---gggu-gu aggac----- 2821 ---gcac-gg uagg(ca-aa -u-)cc|g-- ucgugcauau --------aa gucu-gagac 2881 cug-augc|c ga-|------ -------gcc g(-auug--) uggu------ ------gaag 2941 --uggau-ga uccu-aug-| cugucgagaa a-agccuc-u a-gcga---- ------gu-u 3001 ucaugg--cg g|C|CCGUAC CCUAAACC(G ACUCA)GG|U GG-UCAGGU- A-(GAGAA)U 3061 ACCGAGGCGU ||UCGGGUGA ACUAUGGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGCCCCCGUA AC(-UUCG)G GAGAAGGGGG |GCCAUc--- -acuggug-- -----auccg 3181 a(-uuuac)u cggug----- --agcuggg- --gGUGG-C| C(GCA)GAGA CCAGCGA-GA 3241 AG|CGACU-- ---GU(UUAC UAAAA)ACAC AGGUCCGUG| CGAAGCC(GU AA------)G 3301 GCGAUGU-AU ACGAACUGA- CGCCUGCCCG GU|GCUG-GA A-CGUUAAGG GGACCGGUUA 3361 GCuga-cu-- (U-UCG)ggu cg------GC GA-AGCUGAG AACUUAAGCG |CCAGUAAAC 3421 |-GGC|GGUG GU(AACUAUA )ACCAUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-CUUCUCG ACUGUCUCAA CCAUAGGCCC 3541 G|GUGAAAUU |GCACUAC-G AG(UAAAGAU G)CUCGUUUC GCGCAGC-AG GACGGAAAGA 3601 CCCCG-GG|A CCU-UUACUA U|AGUUUGAU AUU|GGUGUU CGGUUCGGCU UGUGUAGGAU 3661 AGGUGGGAGA CUUUGAAG-- CGGCCAC(GC CA)GUGGUUG UGGAGUCGUC -G-UUGAAAU 3721 ACCACU|CUG G-UCGUGCUG GAU-GUCUAA -CCUGGG--- -UCCG(--UG -AUC)-CGGA 3781 UCAGG-GACA GUGUCUGAUG GG-UAGUUUA ACUG(GGG)C GGUU|GCCUC C(UAA-AGAG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGCCUGG(U UGGCAA)UCA GGUGUU-GA| 3901 GU(G|UAAGU )GCACAAGGG AGCUUGACUG UGAGAC(CGA CGG)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |ACUAGUGAU CCGGCAGUGG CU(UGUGGA) AGC|GCUGUC GCUCAAC|GG 4021 AUAAAAGGUA CCC|CGGG|G AUAACAG|GC UGA--UCUUC CCCAAGA(G- UCC-AUA)UC 4081 GACGGGA-UG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GGAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GCUGUG C-G|CG-UAG 4261 GAAUAUU|GA -|GAAGGGC- UGU------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGACGG|ACG AACCUCUGGU GUGCCAGU|U GUCCU(GC-C A-)AGGGCA- UGGCUGGUUG 4381 GCU-ACGUUC GGAAAGGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAGCC UGCUUC|GAG 4441 AUGAGUAUUC C|CA|CCCU- -(CUUGA-)- -AGGG--UU- AAGG|-CU|C CCAG-(UAGA 4501 CG-A)CUGGG -UUGAUAG|G CCAG|AUGUG -GAAGCCCG- -(GUAA-)-- CGGGU|GG-A 4561 GCUG|A|CUG GUACUAAUA- GGCCGA-GG| GCUUGU-CCU C-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS A.oriental 4759 bp RNA RNA 11-JAN-191 DEFINITION Amycolatopsis orientalis. ACCESSION No information KEYWORDS No information. SOURCE Amycolatopsis orientalis. ORGANISM Amycolatopsis orientalis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X81576 LOCUS AO23SRNA 1089 bp RNA BCT 26-SEP-1994 DEFINITION A.orientalis 23S rRNA gene (partial). ACCESSION X81576 KEYWORDS 23S ribosomal RNA; 23S rRNA gene; 5S ribosomal RNA; 5S rRNA gene. SOURCE Amycolatopsis orientalis. ORGANISM Amycolatopsis orientalis Prokaryota; Bacteria; Firmicutes; Irregular asporogenous rods; Actinomycetes and related organisms; Pseudonocardiaceae. REFERENCE 1 (bases 1 to 1089) AUTHORS Mehling,A., Wehmeier,U.F. and Piepersberg,W. TITLE Use of the 'reverse' sequencing primer for random amplified polymorphic DNA (RAPD) fingerprinting assays of actinomycetes JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 1089) AUTHORS Piepersberg,W.M. TITLE Direct Submission JOURNAL Submitted (13-SEP-1994) to the EMBL/GenBank/DDBJ databases. W.M. Piepersberg, Bergische Univ. Gesamthochschule, Wuppertal, Inst. fuer Chemische Mikrobiologie, Gaussstr. 20, 42097 Wuppertal, FRG STANDARD full automatic COMMENT NCBI gi: 550304 FEATURES Location/Qualifiers source 1..1089 /organism="Amycolatopsis orientalis" /sub_species="lurida" /strain="DSM43187" rRNA <1..993 /product="23S ribosomal RNA" primer_bind 1..16 rRNA 1067..>1089 /product="5S ribosomal RNA" primer_bind 1074..1089 BASE COUNT 231 a 248 c 351 g 259 t ORIGIN BASE COUNT 213 a 227 c 327 g 226 t 3766 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)-~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ 1201 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~(~~~~~~~ 1261 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 1381 ~~~~~~~~~) ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|~~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~gaa ac(agcuaug )ACCAUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-CUUCUCG ACUGUCUCAA CCAUAGGCCC 3541 G|GUGAAAUU |GCACUAC-G AG(UAAAGAU G)CUCGUUUC GCGCAGC-AG GACGGAAAGA 3601 CCCCG-GG|A CCU-UUACUA U|AGCUUGAU AUU|GGUGUU CGGUUCGGCU UGUGUAGGAU 3661 AGGUGGGAGA CUGUGAAC-- UCGUCAC(GC CA)GUGCGGG GGGAGUCGUU -G-UUGAAAU 3721 ACCACU|CUG G-UCGUGCUG GAU-GUCUAA -CCUGGG--- -UCCG(--ug -auc)-CGGA 3781 UCAGG-GACA GUGUCUGGUG GG-UAGUUUA ACUG(GGG)C GGUU|GCCUC C(UAA-AGAG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGCCUGG(U UGGCAA)UCA GGUGUU-GA| 3901 GU(G|UAAGU )GCACAAGGG AGCUUGACUG UGAGAC(UGA CGG)GUCGAG CAGGUAC(GA 3961 AA)GU-AGGG |ACUAGUGAU CCGGCAGUGG CU(UGUGGA) AGC|GCUGUC GCUCAAC|GG 4021 AUAAAAGGUA CCC|CGGG|G AUAACAG|GC UGA--UCUUC CCCAAGA(G- UCC-AUA)UC 4081 GACGGGA-UG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GGAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GCUGUG C-G|CG-UAG 4261 GAGUCUU|GA -|GAAGGGC- UGU------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGACGG|ACG AACCUCUGGU GUGCCAGU|U GUCCU(GC-C A-)AGGGCA- UGGCUGGUUG 4381 GCU-ACGUUC GGAAAGGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAGCC UGCUUC|GAG 4441 AUGAGGGCUC C|CA|CCUC- -(CUUGA-)- -GGGG--UU- AAGG|-CU|C CCAG-(UAGA 4501 CG-A)CUGGG -UUGAUAG|G CCAG|AUAUG -GAAGCCUG- -(GUAA-)-- CGGGU|GG-A 4561 GUUG|A|CUG GUACUAAUA- GGCCGA-GG| GCUUGU-CCU C-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS S.rimosus 4759 bp RNA RNA 11-JAN-191 DEFINITION Streptomyces rimosus. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces rimosus. ORGANISM Streptomyces rimosus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X62884 ID SRRRNF standard; DNA; PRO; 5507 BP. XX AC X62884; XX DT 30-JUN-1994 (Rel. 40, Created) DT 30-JUN-1994 (Rel. 40, Last updated, Version 2) XX DE S.rimosus rrnF operon for 16S rRNA, 23S rRNA and 5S rRNA XX KW 16S ribosomal RNA; 23S ribosomal RNA; 5S ribosomal RNA; KW rrnf operon. XX OS Streptomyces rimosus OC Prokaryota; Bacteria; Firmicutes; Streptomycetaceae. XX RN [1] RP 1-5507 RA Pujic P.; RT ; RL Submitted (29-OCT-1991) to the EMBL/GenBank/DDBJ databases. RL P. Pujic, Ruder Boskovic Institute, Department of Organic Chemistry RL and Biochemistry, P.O.Box 1016, 41001Zagreb, Republic of Croatia XX RN [2] RP 1-5507 RA Pujic P., Plohl M., Durajlyas S., Gamulin V.; RT "Sequence analysis of rrnF operon from S.rimosus"; RL Unpublished. XX FH Key Location/Qualifiers FH FT source 1..5507 FT /organism="Streptomyces rimosus" FT /strain="R6-554" FT rRNA 130..1658 FT /gene="rrnF" FT /product="16S rRNA" FT rRNA 1957..5077 FT /gene="rrnF" FT /product="23S rRNA" FT rRNA 5150..5269 FT /gene="rrnF" FT /product="5S rRNA" XX SQ Sequence 5507 BP; 1199 A; 1318 C; 1874 G; 1116 T; 0 other; BASE COUNT 713 a 704 c 1066 g 638 t 1638 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG CCAAGUUUU- --UAAGGGCG CACGGUGGAU 121 G|CCUUGG|C ACCAGG|AA| CC-CAUGAAG GA|CGUG(GG AG-GC-)C|- GCG-AUAGGC 181 CCCGGG|-GA GCU(G-UCAA CCG-)AGCUU UG-AUC-CGG GGGUG|UCCG AAUGGG(GAA 241 A)CCC|GGCA GUC-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --gucaug)- GGCUGUC-AC CC-GUACCU( 481 GA-ACUCA-- UA)GGG-UAU -GUG--GAG- G-GAAC|GC- GGGGAAGU|G A(AACA)UCU 541 CAGUA-CCCG CAGGAAGAGA AAAC(-AACC --)GUGAU|U CC-GGGAGUA GU(GGUGA)G 601 CGA-AAC-CG GA-UGA-GGC CAAAccaguc -acgugugau accc-(ggca -)----gggg 661 uugcgugguu gggguugugg gaguucucu- ------ugau cgguc(-ugc c-)ggccguc 721 gg----ugag ucagaaaccg uug-augu-a ggcGAAg-ga cau(g-cgaa a)g-guccgg 781 |c(gua)gaG GG(UAAGACC )CCCGU-Agc u-gaaacauu agc-gg-cuc gc-------- 841 ---------- --uugagaac caccc---AA GUAGCACGGG G(CCCGUG-A AA)UCCCGUG 901 UGAAUCU-GG C-GG(GACCA C)CC-GUU-A AGCCUAA--- -AUAUUCCCU GGUGACCGAU 961 AGCG-GA--U AGUACC(GUG A)-GGGA-AU GGUGAAAA-G UACCGC(GG- GA-)GCGGA- 1021 -GUGAAA-UA GUACCUGAAA CCGU-GUGCC UACAA-G-CC GUGGGAGCGu -cgc-gcaga 1081 gaa-----(- ---cuug--) ------uucu uugcgu--CG UGACUGCGUG CCU(UUU-GA 1141 AG|A)AUGA| -GCCUGCGAG UUUGCGGUA- UGUUGC-GAG GUUAACCC-( --gugu)-GG 1201 G-GAAGCCGU AGC(GAAA-) GCGAGUCC(G AA-GA)GGGC GA-------- --(------- 1261 ----)----- -----UA-UA G-UAGCGUGC CCAA-GACCC GAAGC-GGA- GUGA-UCUAG 1321 CCAUGGG|CA GGUUGAAGCG GAGG(UAAG) AC-UUCGUGG AGGACCGAAC C-CACCAGG( 1381 -GUUGAAAA) CCUGG|GGG- AUGAC-CUGU GGUUAAGGGU (-GAAAG)GC CAAUCAAACU 1441 CCGUGAUAGC UGGUUCUCCC CGAAAUGCAU (-UUAG)GUG CAGC|-GUCG UGUGU---u| 1501 -ucu|UGCCG G|AGGUAG|A GC-ACUGG-A UAGGCGA-UG |-GGCCC(ua cc-)GGGUUA 1561 CUGACCUUAG -CCAAACUCC GAA-UG-|CC G-G-U-A--- agug--aga| gcg-CGGCAG 1621 UGAGAC--UG U-GGGG(GAU AAG)CUCCAU -GGUC-GAGA GGG(-AAACA G-)CCCAGAG 1681 CAUCGACUAA G--C|CCCU- AAGCG-UGUG -C-UAAGGUG ------GGAA AGGAUGUG-G 1741 AGUCGCAGA- GACAACCAGG AGGUU-GC(U UAGAAGCA)G CCAU-CCU|U (GAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CAA GU-GAU-UC- -CGC|GCCGA CAAU-GUAG- 1861 CGGGGCUCAA GCACA-C|C| GCCGAAGUC| AUGU|cauug cagu---(au gu----acuc 1921 -(cuaa)cgg gg-------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- acugugaug- GG-UAGGGGA G|-----CGU 2221 C-GUG-UG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --C-CGGG-U 2341 GAAGCAG-C- G-CC(-GGAA -)GGU-AGUU GUGG|ACGGU U-CACGAGUG AGAAUGC-AG 2401 GC|AUG-AGU A--GCGAU-A CACACG(UGG GAAA)CGUGU G|CGCC-GAU UGACUAAGGG 2461 UUCCUG-GGU CAAG-(CUGA U)CU|G-CCC AGGGUAAGU| CGG|G-ACCU AAGGCGAGGC 2521 C(GACA)-G- GCGU-AGUCG AUGG-ACAAC CGG-(UU-GA UAUU)C-CGG U|AC|cc-g- 2581 cu-uug-aag c-gccaaaca ucgaauccuc ug-augcuaa ggccgugaag ccg------c 2641 ccuggaguc( uuc-g)gaca -aagggg-ag ugguggagcc gcugauc-ca aggugguagu 2701 aggugaguga u------ggg g--uga-cgc aggaaggua- gucc-ag|cc c-ggg(cg-- 2761 gugguu-gu- --)cc-cggg -|guaa---- ---------- ---gggu-gu aggac----- 2821 ---gcac-gg uagg(ca-aa -u-)cc|g-- ucgugcauga a--------- gucu-gagac 2881 cug-augc|c ga-|------ -------gcc g(-auug--) uggu------ ------gaag 2941 --uggau-ga uccu-aug-| cugucgagaa a-agccuc-u a-gcga---- ------gu-u 3001 ucaugg--cg g|C|CCGUAC CCUAAACC(G ACUCA)GG|U GG-UCAGGU- A-(GAGAA)U 3061 ACCGAGGCGU ||UCGGGUGA ACUAUGGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGCCCCCGUA AC(-UUCG)G GAGAAGGGGG |gccacg--- -gcuggug-- -----aucac 3181 c(-cuugc)g gugug----- --agcuggu- --ggugg-C| C(GCA)GAGA CCAGCGA-GA 3241 AG|CGACU-- ---GU(UUAC UAAAA)ACAC AGGUCCGUG| CGAAGCC(GU AA------)G 3301 GCU-UGU-AU ACGGACUGA- CGCCUGCCCG GU|GCUG-GA A-CGUUAAGG GGACCGGUUA 3361 GCucc-au-- (U-UCG)gug gg------GC GA-AG-UGAG AACUUAAGCG |CCAGUAAAC 3421 |-GGC|GGUG GU(AACUAUA )ACCAUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-CUUCUCG ACUGUCUCAA CCAUAGGCCC 3541 G|GUGAAAUU |GCACUAC-G AG(UAAAGAU G)CUCGUUUC GCGCAGGCAG GACGGAAAGA 3601 CCCCG-GG|A CCU-UUACUA U|AGCUUGAU AUU|GGUGUU UGGUUCGGCU UGUGUAGGAU 3661 AGGUGGGAGA CUGUGAAG-- CCGUGAC(GC CA)GUCAUGG UGGAGUCGCU -G-UUGAAAU 3721 ACCACU|CUG G-UCGUGCUG GAU-GUCUAA -CCUGGG--- -UCCG(--ug -auc)-CGGA 3781 UCAGG-GACA GUGUCUGGUG GG-UAGUUUA ACUG(GGG)C GGUU|GCCUC C(UAA-AGGG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGCCUGG(U UGGCAA)UCA GGUGUU-GA| 3901 GU(G|UAAGU )GCACAAGGG AGCUUGACUG UGAGAC(UGA CGG)GUCGAG CAGGUAC(GA 3961 AA)GU-AGGG |ACUAGUGAU CCGGCGGUGG CU(UGUGGA) AGC|GCCGUC GCUCAAC|GG 4021 AUAAAAGGUA CCC|CGGG|G AUAACAG|GC UGA--UCUUC CCCAAGA(G- UCC-AUA)UC 4081 GACGGGA-UG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GGAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GCUGUG C-G|CG-UAG 4261 GAGUCUU|GA -|GAAGGGC- UGU------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGACGG|ACG AACCUCUGGU GUGCCAGU|U GUUCU(GC-C A-)AGGGCA- UGGCUGGUUG 4381 GCU-ACGUUC GGAAAGGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAGCC UGCUUC|GAG 4441 AUGAGGGCUC C|CU|CCCA- -(CUUGA-)- -UGGG--GU- AAGG|-CU|C CCAG-(UAGA 4501 CG-A)CUGGG -UUGAUAG|G CCAG|AUAUG -GAAGCGCC- -(GUAA-)-- GGUGU|GG-A 4561 GUUG|A|CUG GUACUAAUA- GGCCGA-GG| GCUUGU-CCU C-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS S.mashuens 4759 bp RNA RNA 11-JAN-191 DEFINITION Streptomyces mashuensis. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces mashuensis. ORGANISM Streptomyces mashuensis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X81578 LOCUS SM23SRNA 1094 bp RNA BCT 26-SEP-1994 DEFINITION S.mashuense 23S rRNA (partial). ACCESSION X81578 KEYWORDS 23S ribosomal RNA; 23S rRNA gene; 5S ribosomal RNA; 5S rRNA gene. SOURCE Streptoverticillium mashuense. ORGANISM Streptoverticillium mashuense Prokaryota; Bacteria; Firmicutes; Streptomycetaceae. REFERENCE 1 (bases 1 to 1094) AUTHORS Mehling,A., Wehmeier,U.F. and Piepersberg,W. TITLE Use of the 'reverse' sequencing primer for random amplified polymorphic DNA (RAPD) fingerprinting assays of actinomycetes JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 1094) AUTHORS Piepersberg,W.M. TITLE Direct Submission JOURNAL Submitted (13-SEP-1994) to the EMBL/GenBank/DDBJ databases. W.M. Piepersberg, Bergische Univ. Gesamthochschule, Wuppertal, Inst. fuer Chemische Mikrobiologie, Gaussstr. 20, 42097 Wuppertal, FRG STANDARD full automatic COMMENT NCBI gi: 550431 FEATURES Location/Qualifiers source 1..1094 /organism="Streptoverticillium mashuense" /strain="DSM40221" rRNA <1..993 /product="23S ribosomal RNA" primer_bind 1..16 rRNA 1072..>1094 /product="5S ribosomal RNA" primer_bind 1079..1094 BASE COUNT 234 a 249 c 356 g 255 t ORIGIN BASE COUNT 213 a 229 c 329 g 222 t 3766 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)-~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ 1201 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~(~~~~~~~ 1261 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 1381 ~~~~~~~~~) ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|~~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~gaa ac(agcuaug )ACCAUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-CUUCUCG ACUGUCUCAA CCAUAGGCCC 3541 G|GUGAAAUU |GCACUAC-G AG(UAAAGAU G)CUCGUUUC GCGCACG-AG GACGGAAAGA 3601 CCCCG-GG|A CCU-UUACUA C|AGUUUGAU AUU|GGUGUU CGGUUCGGCU UGUGUAGGAU 3661 AGCUGGGAGA CUGUGAAG-- CAUGCAC(GC CA)GUGUGUG UGGAGUCGUC -G-UUGAAAU 3721 ACCAGU|CUG G-UCGUGCUG GAU-GUCUAA -CCUGGG--- -UCCG(--ug -auc)-CGGA 3781 UCAGG-GACA GUGUCUGAUG GG-UAGUUUA ACUG(GGG)C GGUG|GCCUC C(UAA-AGGG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGCCUGG(U UGGCAA)UCA GGUGUU-GA| 3901 GU(G|UAAGU )GCACAAGGG AGCUUGACUG UGAGAC(CGA CGG)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |ACUAGUGAU CCGGCCGUGG CU(UGUGGA) AGC|GCCGUC GCUCAAC|GG 4021 AUAAAAGGUA CCC|CGGG|G AUAACAG|GC UGA--UCUUC CCCAAGA(G- UCC-AUA)UC 4081 GACGGGA-UG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GAAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GCUGUG C-G|CG-UAG 4261 GAGUCUU|GA -|GAAGGGC- UGU------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGACGG|ACG AACCUCUGGU GUGCCAGU|U GUUCU(GC-C A-)AGGGCA- UGGCUGGUUG 4381 GCU-ACGUUC GGGAGGGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAGCC UGCUUC|GAG 4441 AUGAGGACUC C|CA|CCCA- -(CUUGA-)- -UGGG--GU- AAGG|-CU|C CCAG-(UAGA 4501 CG-A)CUGGG -UUGAUAG|G CCAG|GUGUG -GAAGACCG- -(GUAA-)-- CGGUU|GG-A 4561 GCUG|A|CUG GUACUAAUA- GGCCGA-GG| GCUUGU-CCA U-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS S.coelicol 4759 bp RNA RNA 06-JUL-1998 DEFINITION Streptomyces coelicolor.; 16S rRNA; 23S rRNA; 5S rRNA; ATP dependent DNA helicase; DNA glycosylase; ftsK homolog; pgsA; phosphatidylglycerophosphate synthase; rrnE; sensory histidine kinase; transfer-RNA-Thr; two-component regulator. ACCESSION AL0310 1 KEYWORDS 16S rRNA; 23S rRNA; 5S rRNA; ATP dependent DNA helicase; DNA glycosylase; ftsK homolog; pgsA; phosphatidylglycerophosphate synthase; rrnE; sensory histidine kinase; transfer-RNA-Thr; two-component regulator. SOURCE Streptomyces coelicolor. ORGANISM Streptomyces coelicolor. REFERENCE 1 (bases 1 to 31636) AUTHORS Redenbach,M., Kieser,H.M., Denapaite,D., Eichner,A., Cullum,J., Kinashi,H. and Hopwood,D.A. TITLE A set of ordered cosmids and a detailed genetic and physical map for the 8 Mb Streptomyces coelicolor A3(2) chromosome JOURNAL Mol. Microbiol. 21 (1), 77-96 (1996) STANDARD No information REFERENCE 2 (bases 1 to 31636) AUTHORS Harris,D. and Taylor,K. JOURNAL Unpublished STANDARD No information REFERENCE 3 (bases 1 to 31636) AUTHORS Parkhill,J., Barrell,B.G. and Rajandream,M.A. TITLE Direct Submission JOURNAL Submitted (03-JUL-1998) Streptomyces coelicolor sequencing project, Sanger Centre, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA E-mail: barrell@sanger.ac.uk Cosmids supplied by Prof. David A. Hopwood, [3] John Innes Centre, Norwich Research Park, Colney, Norwich, Norfolk NR4 7UH, UK STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: AL031031 Notes: Streptomyces coelicolor sequencing at The Sanger Centre is funded by the BBSRC. Details of S. coelicolor sequencing at the Sanger Centre are available on the World Wide Web. (URL; http://www.sanger.ac.uk/Projects/S_coelicolor/) CDS are numbered using the following system eg SC7B7.01c. SC (S. coelicolor), 7B7 (cosmid name), .01 (first CDS), c (complementary strand). The more significant matches with motifs in the PROSITE database are also included but some of these may be fortuitous. The length in codons is given for each CDS. Usually the highest scoring match found by fasta -o is given for CDS which show significant similarity to other CDS in the database . The position of possible ribosome binding site sequences are given where these have been used to deduce the initiation codon. Gene prediction is based on positional base preference in codons using a specially developed Hidden Markov Model (Krogh et al., Nucleic Acids Research, 22(22):4768-4778(1994)) and the FramePlot program of Bibb et al., Gene 30:157-66(1984) as implemented at http://www.nih.go.jp/ jun/cgi-bin/frameplot.pl. CAUTION: We may not have predicted the correct initiation codon. Where possible we choose an initiation codon (atg, gtg, ttg or (att)) which is preceded by an upstream ribosome binding site sequence (optimally 5-13bp before the initiation codon). If this cannot be identified we choose the most upstream initiation codon. IMPORTANT: This sequence MAY NOT be the entire insert of the sequenced clone. It may be shorter because we only sequence overlapping sections once, or longer, because we arrange for a small overlap between neighbouring submissions. Cosmid 7C7 between 9A10 and 4H8 on the AseI-B genomic restriction fragment. BASE COUNT 712 a 717 c 1067 g 625 t 1638 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG CCAAGUUUU- --UAAGGGCG CACGGUGGAU 121 G|CCUUGG|C ACCAGG|AA| CC-GAUGAAG GA|CGUG(GG AG-GC-)C|- ACG-AUAGGC 181 CCCGGG|-GA GUC(G-UCAA CCA-)GGCUU UG-AUC-CGG GGGUG|UCCG AAUGGG(GAA 241 A)CCC|GGCA GUC-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --gucaug)- GGCUGUC-AC CC-GCUGCU( 481 GA-ACACA-- UA)GGC-AGU -GUG--GAG- G-GAAC|GC- GGGGAAGU|G A(AACA)UCU 541 CAGUA-CCCG CAGGAAGAGA AAAC(-AACC --)GUGAU|U CC-GGGAGUA GU(GGCGA)G 601 CGA-AAC-CG GA-UGA-GGC CAAAccguau -acgugugag accc-(ggca -)----gggg 661 uugcgugugc gggguugugg gaucucucuu ------uua- cgguc(-ugc c-)ggccgug 721 a---gacgag ucagaaaccg uug-augu-a ggcGAAg-ga cau(g-cgaa a)g-guccgg 781 |c(gua)gaG GG(UAAGACC )CCCGU-Agu c-gaaacguc aac-gg-cuc guu------- 841 ---------- ---ugagaga caccc---AA GUAGCACGGG G(CCCGAG-A AA)UCCCGUG 901 UGAAUCU-GG C-GG(GACCA C)CC-GCU-A AGCCUAA--- -AUAUUCCCU GGUGACCGAU 961 AGCG-GA--U AGUACC(GUG A)-GGGA-AU GGUGAAAA-G UACCGC(GG- GA-)GCGGA- 1021 -GUGAAA-UA GUACCUGAAA CCGU-GUGCC UACAA-G-CC GUGGGAGCGu -cgg-gaugg 1081 ag------(- ---cuug--) -------cuc cauccu--CG UGACUGCGUG CCU(UUU-GA 1141 AG|A)AUGA| -GCCUGCGAG UUUGCGGUG- UGUUGC-GAG GUUAACCC-( --gggu)-GG 1201 G-GAAGCCGU AGC(GAAA-) GCGAGUCC(G AA-UA)GGGC GU-------- --(------- 1261 ----)----- -----uu-ua G-UAGCACGC UCAA-GACCC GAAGC-GGA- GUGA-UCUAG 1321 CCAUGGG|CA GGUUGAAGCG GCUG(UAAG) AG-GUCGUGG AGGACCGAAC C-CACCAGG( 1381 -GUUGAAAA) CCUGG|GGG- AUGAC-CUGU GGUUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 CCGUGAUAGC UGGUUCUCCC CGAAAUGCAU (-UUAG)GUG CAGC|-GUCG UGUGU---u| 1501 -UCU|UGCCG G|AGGUAG|A GC-ACUGG-A UAGGCGA-UG |-GGCCC(ua cc-)GGGUUA 1561 CUGACCUUAG -CCAAACUCC GAA-UG-|CC G-G-U-A--- agug--aga| GCG-CGGCAG 1621 UGAGAC--UG U-GGGG(GAU AAG)CUCCAU -GGUC-GAGA GGG(-AAACA G-)CCCAGAG 1681 CAUCGACUAA G-GC|CCCU- AAGCG-UACG -C-UAA-GUG ------GGAA AGGAUGUG-G 1741 AGUCGCACA- GACAACCAGG AGGUUGGC(U UAGAAGCA)G CCAC-CCU|U (GAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CUA GU-GAU-UC- -CGC|GCCGA CAAU-GUAG- 1861 CGGGGCUCAA GCGUA-C|C| GCCGAAGUC| GUGU|cauug cagc---(aa ua----cggc 1921 -(caac)-gc cg-------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- gcugugaug- GG-UAGGGGA G|-----CGU 2221 C-GUG-UG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --C-CGGG-U 2341 GAAGCAG-C- C-GC(-GGAA -)GCG-AGUU GUGG|ACGGU U-CACGAGUG AGAAUGC-AG 2401 GC|AUG-AGU A--GCGAU-A CAAACG(UGA GAAA)CGUUU G|CGCC-GAU UGACUAAGGG 2461 UUCCUG-GGU CAAG-(CUGA U)CU|G-CCC AGGGUAAGU| CGG|G-ACCU AAGGCGAGGC 2521 C(GACA)-G- GCGU-AGUCG AUGG-AUAAC CGG-(UU-GA UAUU)C-CGG U|AC|cc-g- 2581 cu-gug-aag c-gucaaaca ucgagcaucg ug-augcuaa ggccgugaag ccg-----cc 2641 cuga-ucuc( uuc-g)gagu ugagggg-ag ugguggagcc gccgaaccaa gcggu-uagu 2701 aggugaguga u------ggg g--uga-cgc aggaaggua- gucc-au|cc c-ggg(cg-- 2761 gugguu-gu- --)cc-cggg -|guaa---- ---------- ---gggu-gu aggac----- 2821 ---guca-gg uagg(ua-aa -u-)cc|g-- ccugacaug- ---------a gucu-gagac 2881 cug-augc|c ga-|------ -------gcc g(-auug--) uggu------ ------gaag 2941 --uggau-ga uccu-aug-| cugucgagaa a-agccuc-u a-gcga---- ------gu-u 3001 ucaugg--cg g|C|CCGUAC CCUAAACC(G ACUCA)GG|U GG-UCAGGU- A-(GAGAA)U 3061 ACCGAGGCGU ||UCGGGUGA ACUAUGGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGCCCCCGUA AC(-UUCG)G GAGAAGGGGG |GCCACa--- -ccuggug-- -----acgag 3181 u(-uuugc)a cucug----- --agcuggg- --gGUGG-C| C(GCA)GAGA CCAGCGA-GA 3241 AG|CGACU-- ---GU(UUAC UAAAA)ACAC AGGUCCGUG| CGAAGCC(GU AA------)G 3301 GCGAUGU-AU ACGGACUGA- CGCCUGCCCG GU|GCUG-GA A-CGUUAAGG GGACCGGUUA 3361 GUcac-au-- (U-UCG)gug ug------GC GA-AGCUGAG AACUUAAGCG |CCAGUAAAC 3421 |-GGC|GGUG GU(AACUAUA )ACCAUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-CUUCUCG ACUGUCUCAA CCAUAGGCCC 3541 G|GUGAAAUU |GCACUAC-G AG(UAAAGAU G)CUCGUUUC GCGCAGC-AG GACGGAAAGA 3601 CCCCG-GG|A CCU-UUACUA C|AGUUUGAU AUU|GGUGUU CGGUUCGGCU UGUGUAGGAU 3661 AGCUGGGAGA CUUUGAAG-- CUCGCAC(GC CA)GUGUGGG UGGAGUCGUC -G-UUGAAAU 3721 ACCAGU|CUG G-UCGUGCUG GAU-GUCUAA -CCUGGG--- -UCCG(--UG -AUC)-CGGA 3781 UCAGG-GACA GUGUCUGAUG GG-UAGUUUA ACUG(GGG)C GGUU|GCCUC C(UAA-AGAG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGCCUGG(U UGGCAA)UCA GGUGUU-GA| 3901 GU(G|UAAGU )GCACAAGGG AGCUUGACUG UGAGAC(CGA CGG)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |ACUAGUGAU CCGGCGGUGG CU(UGUGGA) AGC|GCCGUC GCUCAAC|GG 4021 AUAAAAGGUA CCC|CGGG|G AUAACAG|GC UGA--UCUUC CCCAAGA(G- UCC-AUA)UC 4081 GACGGGA-UG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GGAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GCUGUG C-G|CG-UAG 4261 GAGUCUU|GA -|GAAGGGC- UGU------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGACGG|ACG AACCUCUGGU GUGCCAGU|U GUCCU(GC-C A-)AGGGCA- UGGCUGGUUG 4381 GCU-ACGUUC GGGAGGGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAGCC UGCUUC|GAG 4441 AUGAGGACUC C|CA|CCCC- -(CUUGA-)- -GGGG--UU- AAGG|-CU|C CCAG-(UAGA 4501 CG-A)CUGGG -UUGAUAG|G CCGG|AUCUG -GAAGCACC- -(GUGA-)-- GGUGU|GG-A 4561 GGUG|A|CCG GUACUAAUA- GGCCGA-GG| GCUUGU-CCU C-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS S.ambofaci 4759 bp RNA RNA 14-JAN-1989 DEFINITION Streptomyces ambofaciens. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces ambofaciens. ORGANISM Streptomyces ambofaciens. REFERENCE 1 (bases 1 to 31636) AUTHORS Pernodet,J.-L., Boccard,F., Alegre,M.-T., Gagnat,J. & Guerineau,M JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: M27245 BASE COUNT 714 a 719 c 1060 g 627 t 1639 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG CCAAGUUUU- --UAAGGGCG CACGGUGGAU 121 G|CCUUGG|C ACCAGG|AA| CC-GAUGAAG GA|CGUG(GG AG-GC-)C|- ACG-AUAGUC 181 CCCGGG|-GA GCC(G-UCAA CCA-)GGCUU UG-AUC-CGG GGGUU|UCCG AAUGGG(GAA 241 A)CCC|GGCA GUC-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --gucaug)- GGCUGUC-AC CC-GCUGCU( 481 GA-ACACA-- UA)GGC-AGU -GUG--GAG- G-GAAC|GC- GGGGAAGU|G A(AACA)UCU 541 CAGUA-CCCG CAGGAAGAGA AAAC(-AACC --)GUGAU|U CC-GGGAGUA GU(GGCGA)G 601 CGA-AAC-CG GA-UGA-GGC CAAAccguau -acgugugag accc-(ggca -)----gggg 661 uugcgugugc gggguugugg gaucucucuu ------uca- caguc(-ugc c-)ggcugug 721 a---ggcgag ucagaaaccg uug-augu-a ggcGAAg-ga cau(g-cgaa a)g-guccgg 781 |c(gua)gaG GG(UAAGACC )CCCGU-Agu c-gaaacauc agc-gg-cuc guu------- 841 ---------- ---ugagaga caccc---AA GUAGCACGGG G(CCCGAG-A AA)UCCCGUG 901 UGAAUCU-GG C-GG(GACCA C)CC-GCU-A AGCCUAA--- -AUAUUCCCU GGUGACCGAU 961 AGCG-GA--U AGUACC(GUG A)-GGGA-AU GGUGAAAA-G UACCGC(GG- GA-)GCGGA- 1021 -GUGAAA-UA GUACCUGAAA CCGU-GUGCC UACAA-G-CC GUGGGAGCgu -cgg-acauc 1081 aag-----(- ---cuug--) ------cuug gugucu--cG UGACUGCGUG CCU(UUU-GA 1141 AG|A)AUGA| -GCCUGCGAG UUUGCGGUG- UGUUGC-GAG GUUAACCC-( --gagu)-GG 1201 G-GAAGCCGU AGC(GAAA-) GCGAGUCC(G AA-UA)GGGC Gu-------- --(------- 1261 ----)----- -----uu-ca G-UAGCACGC UCAA-GACCC GAAGC-GGA- GUGA-UCUAG 1321 CCAUGGG|CA GGUUGAAGCG GAGG(UAAG) AC-UUCGUGG AGGACCGAAC C-CACCAGG( 1381 -GUUGAAAA) CCUGG|GGG- AUGAC-CUGU GGUUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 CCGUGAUAGC UGGUUCUCCC CGAAAUGCAU (-UUAG)GUG CAGC|-GUCG UGUGU---u| 1501 -UCU|UGCCG G|AGGUAG|A GC-ACUGG-A UAGGCGA-UG |-GGCCC(ua cc-)GGGUUA 1561 CUGACCUUAG -CCAAACUCC GAA-UG-|CC G-G-U-A--- agug--aga| GCG-CGGCAG 1621 UGAGAC--UG U-GGGG(GAU AAG)CUCCAU -GGUC-GAGA GGG(-AAACA G-)CCCAGAG 1681 CAUCGACUAA G-GC|CCCU- AAGCG-UACG -C-UAA-GUG ------GGAA AGGAUGUG-G 1741 AGUCGCACA- GACAACCAGG AGGUUGGC(U UAGAAGCA)G CCAC-CCU|U (GAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CUA GU-GAU-UC- -CGC|GCCGA CAAU-GUAG- 1861 CGGGGCUCAA GCGUA-C|C| GCCGAAGUC| GUGU|cauuc auac---(au ua----gggc 1921 -(caac)-gc cu-------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- guauggaug- GG-UAGGGGA G|-----CGU 2221 C-GUG-UG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --C-CGGG-U 2341 GAAGCAG-C- C-GC(-GGAA -)GCG-AGUU GUGG|ACGGU U-CACGAGUG AGAAUGC-AG 2401 GC|AUG-AGU A--GCGAU-A CAAACG(UGA GAAA)CGUUU G|CGCC-GAU UGACUAAGGG 2461 UUCCUG-GGU CAAG-(CUGA U)CU|G-CCC AGGGUAAGU| CGG|G-ACCU AAGGCGAGGC 2521 C(GACA)-G- GCGU-AGUCG AUGG-AUAAC CGG-(UU-GA UAUU)C-CGG U|AC|cc-g- 2581 cu-gug-aag c-gucaaaca ucgagcaucg ug-augcuaa ggccgugaag ccg-----cc 2641 cuga-ucuc( uuc-g)gagu ugagggg-ag ugguggagcc gccggaccaa gcggu-uagu 2701 aggugaguga u------ggg g--uga-cgc aggaaggua- gucc-a-|uc c-cgg(cg-- 2761 -ugguu-gu- --)cc-cggg -|gua----- ---------- ---aggu-gu aggcc----- 2821 ---gugc-gg uagg(ua-aa -u-)cc|g-- ucgcacacaa ---------- ggcu-gagac 2881 cug-augc|c ga-|------ -------gcc g(-auug--) uggu------ ------gaag 2941 --uggau-ga uccu-aug-| cugucgagaa a-agccuc-u a-gcga---- ------gu-u 3001 ucaugg--cg g|C|CCGUAC CCUAAACC(G ACUCA)GG|U GG-UCAGGU- A-(GAGAA)U 3061 ACCGAGGCGU ||UCGGGUGA ACUAUGGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGCCCCCGUA AC(-UUCG)G GAGAAGGGGG |GCCACa--- -ccuggug-- -----augau 3181 c(-uuuac)g gucug----- --agcuggg- --gGUGG-C| C(GCA)GAGA CCAGCGA-GA 3241 AG|CGACU-- ---GU(UUAC UAAAA)ACAC AGGUCCGUG| CGAAGCC(GU AA------)G 3301 GCGAUGU-AU ACGGACUGA- CGCCUGCCCG GU|GCUG-GA A-CGUUAAGG GGACCGGUUA 3361 GCucc-au-- (U-UCG)gug gg------GC GA-AGCUGAG AACUUAAGCG |CCAGUAAAC 3421 |-GGC|GGUG GU(AACUAUA )ACCAUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-CUUCUCG ACUGUCUCAA CCAUAGGCCC 3541 G|GUGAAAUU |GCACUAC-G AG(UAAAGAU G)CUCGUUUC GCGCAGC-AG GACGGAAAGA 3601 CCCCG-GG|A CCU-UUACUA C|AGUUUGAU AUU|GGUGUU CGGUUCGGCU UGUGUAGGAU 3661 AGCUGGGAGA CUUUGAAG-- CUCGCAC(GC CA)GUGUGGG UGGAGUCGUC -G-UUGAAAU 3721 ACCAGU|CUG G-UCGUGCUG GAU-GUCUAA -CCUGGG--- -UCCG(--UG -AUC)-CGGA 3781 UCAGG-GACA GUGUCUGAUG GG-UAGUUUA ACUG(GGG)C GGUU|GCCUC C(UAA-AGAG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGCCUGG(U UGGCAA)UCA GGUGUU-GA| 3901 GU(G|UAAGU )GCACAAGGG AGCUUGACUG UGAGAC(CGA CGG)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |ACUAGUGAU CCGGCGGUGG CU(UGUGGA) AGC|GCCGUC GCUCAAC|GG 4021 AUAAAAGGUA CCC|CGGG|G AUAACAG|GC UGA--UCUUC CCCAAGA(G- UCC-AUA)UC 4081 GACGGGA-UG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GGAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GCUGUG C-G|CG-UAG 4261 GAGUCUU|GA -|GAAGGGC- UGU------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGACGG|ACG AACCUCUGGU GUGCCAGU|U GUCCU(GC-C A-)AGGGCA- UGGCUGGUUG 4381 GCU-ACGUUC GGGAGGGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAGCC UGCUUC|GAG 4441 AUGAGGACUC C|CA|CCCC- -(CUUGA-)- -GGGG--UU- AAGG|-CU|C CCAG-(UAGA 4501 CG-A)CUGGG -UUGAUAG|G CCGG|AUCUG -GAAGCACC- -(GCAA-)-- GGUGU|GG-A 4561 GGUG|A|CCG GUACUAAUA- GGCCGA-GG| GCUUGU-CCU C-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS S.livida.1 4759 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U39477 Streptomyces lividans Zarko BASE COUNT 711 a 714 c 1057 g 627 t 1650 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG CCAAGUUUU- --UAAGGGCG CACGGUGGAU 121 G|CCUUGG|C ACCAGG|AA| CC-GAUGAAG GA|CGUG(GG AG-GC-)C|- ACG-AUAGGC 181 CCCGGG|-GA GCU(G-UCAA CCA-)GGCUU UG-AUC-CGG GGGUG|UCCG AAUGGG(GAA 241 A)CCC|GGCA GUC-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --gucaug)- GGCUGUC-AC CC-GCUGCU( 481 GA-ACACA-- UA)GGC-AGU -GUG--GAG- G-GAAC|GC- GGGGAAGU|G A(AACA)UCU 541 CAGUA-CCCG CAG-AAGAGA AAAC(-AACC --)GUGAU|U CC-GGGAGUA GU(GGCGA)G 601 CGA-AAC-CG GA-UGA-GGC CAAAccguau -acgugugag accc-(ggca -)----gggg 661 uugcgugugc gggguugugg gaucucucuu ------uac- caguc(-ugc c-)ggcugug 721 a---gacgag ucagaaaccg uug-augu-a ggcGAAg-ga cau(g-cgaa a)g-guccgg 781 |c(gua)gaG GG(UAAGACC )CCCGU-Agu c-gaaacguc agc-gg-cuc guu------- 841 ---------- ---ugagaga caccc---AA GUAGCACGGG G(CCCGAG-A AA)UCCCGUG 901 UGAAUCU-GG C-GG(GACCA C)CC-GCU-A AGCCUAA--- -AUAUUCCCU GGUGACCGAU 961 AGCG-GA--U AGUACC(GUG A)-GGGA-AU GGUGAAAA-G UACCGC(GG- GA-)GCGGA- 1021 -GUGAAA-UA GUACCUGAAA CCGU-GUGCC UACAA-G-CC GUGGGAGCGu -c---gaug- 1081 ag------(- ---cuug--) -------cuc cauccu--CG UGACUGCGUG CCU(UUU-GA 1141 AG|A)AUGA| -GCCUGCGAG UUUGCGGUG- UGUUGC-GAG GUUAACCC-( --gggu)-GG 1201 G-GAAGCCGU AGC(GAAA-) GCGAGUCC(G AA-UA)GGGC GU-------- --(------- 1261 ----)----- ----uuu-ca g-UAGCACGC UCAA-GACCC GAAGC-GGA- GUGA-UCUAG 1321 CCAUGGC|GA GGUUGAAGCG GCUG(UAAG) AG-GUCGUGG AGGACCGAAC C-CACCAGG( 1381 -GUUGAAAA) CCUGG|GGG- AUGAC-CUGU GGUUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 CCGUGAUAGC UGGUUCUCCC CGAAAUGCAU (-UUAG)GUG CAGC|-GUCG UGUGU---u| 1501 -ucu|UGACG G|AGGUAG|A GC-ACUGG-A UAGGCGA-UG |-GGCCC(ua cc-)GGGUUA 1561 CUGACCUUAG -CCAAACUCC GAA-UG-|CC G-G-U-A--- agug--aga| gcg-CGGCAG 1621 UGAGAC--UG U-GGGG(GAU AAG)CUCCAU -GGUC-GAGA GGG(-AAACA G-)CCCAGAG 1681 CAUCGACUAA G-GC|CCCU- AAGCG-UACG -C-UAA-GUG ------GGAA AGGAUGUG-G 1741 AGUCGCACA- GACAACCAGG AGGUUGGC(U UAGAAGCA)G CCAC-CCU|U (GAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CUA GU-GAU-UC- -CGC|GCCGA CAAU-GUAG- 1861 CGGGGCUCAA GCGUA-C|C| GCCGAAGUC| GUGU|cauug cagc---(aa u----agucc 1921 -(caac)-gc cg-------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- gcugugaug- GG-UAGGGGA G|-----CGU 2221 C-GUG-UG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --C-CGGG-U 2341 GAAGCAG-C- C-GC(-GGAA -)GCG-AGUU GUGG|ACGGU U-CACGAGUG AGAAUGC-AG 2401 GC|AUG-AGU A--GCGAU-A CAAACG(UGA GAAA)CGUUU G|CGCC-GAU UGACUAAGGG 2461 UUCCUG-GGU CAAG-(CUGA U)CU|G-CCC AGGGUAAGU| CGG|G-ACCU AAGGCAAGGC 2521 C(GACA)--- -CGU-AGUCG AUGG-AUAAC CGG-(UU-GA UAUU)C-CGG U|AC|cc-g- 2581 cu-gug-aag c-gucaaaca ucgagcaucg ug-augcuaa ggccgugaag ccg-----cc 2641 cuga-ucuc( uuc-g)gagu ugagggg-ag ugguggagcc gccgaaccaa gcggu-uagu 2701 aggugaguga u------ggg g--uga-cgc aggaaggua- gucc-a-|uc c-ggg(cg-- 2761 gugguu-gu- --)cc-cggg -|guaa---- ---------- ----ggu-gu aggcc----- 2821 ---ggug-ug uagg(ua-aa -u-)cc|g-- cacaccuugu ---------- ggcu-gagac 2881 cug-augc|c ga-|------ -------gcc g(-auug--) uggu------ ------gaag 2941 --uggau-ga uccu-aug-| cugucgagaa a-agccuc-u a-gcga---- ------gu-u 3001 ucaugg--cg g|C|CCGUAC CCUAAACC(G ACUCA)GG|U GG-UCAGGU- A-(GAGAA)U 3061 ACCGAGGCGU ||UCGGGUGA ACUAUGGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGCCCCCGUA AC(-UUCG)G GAGAAGGGGG |GCCACA--- -CCUGgug-- -----acgag 3181 u(-uuugc)a cucug----- --agcuggg- --ggugg-C| C(GCA)GAGA CCAGCGA-GA 3241 AG|CGACU-- ---GU(UUAC UAAAA)ACAC AGGUCCGUG| CGAAGCC(GU AA------)G 3301 GCGAUGU-AU ACGGACUGA- CGCCUGCCCG GU|GCUG-GA A-CGUUAAGG GGACCGGUUA 3361 GUcac-au-- (U-UCG)gug ug------GC GA-AGCUGAG AACUUAAGCG |CCAGUAAAC 3421 |-GGC|GGUG GU(AACUAUA )AC-AUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-CUUCUCG ACUGUCUCAA CCAUAGGCCC 3541 G|GUGAAAUU |GCACUAC-G AG(UAAAGAU G)CUCGUUUC GCGCAGC-AG GACGGAAAGA 3601 CCCCG-GG|A CCU-UUACUA C|AGUUUGAU AUU|GGUGUU CGGUUCGGCU UGUGUAGGAU 3661 AGCUGGGAGA CUUUGAAG-- CUCGCAC(GC CA)GUGUGGG UGGAGUCGUC -G-UUGAAAU 3721 ACCAGU|CUG G-UCGUGCUG GAU-GUCUAA -CCUGGG--- -UCCG(--UG -AUC)-CGGA 3781 UCAGG-GACA GUGUCUGAUG GG-UAGUUUA ACUG(GGG)C GGUU|GCCUC C(UAA-AGAG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGCCUGG(U UGGCAA)UCA GGUGUU-GA| 3901 GU(G|UAAGU )GCACAAGGG AGCUUGACUG UGAGAC(CGA CGG)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |ACUAGUGAU CCGGCGGUGG CU(UGUGGA) AGC|GCCGUC GCUCAAC|GG 4021 AUAAAAGGUA CCC|CGGG|G AUAACAG|GC UGA--UCUUC CCCAAGA(G- UCC-AUA)UC 4081 GACGGGA-UG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GGAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGUGGUAC G---AGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GCUGUG C--|-G-UAG 4261 GAGUCUU|GA -|GAAGGGC- UGU------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGACGG|ACG AACCUCUGGU GUGCCAGU|U GUCCU(GC-C A-)AGGGCA- UGGCUGGUUG 4381 GCU-ACGUUC GGGAGGGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAGCC UGCUUC|GAG 4441 AUGAGGACUC C|CA|CCCC- -(CUUGA-)- -GGGG--UU- AAGG|-CU|C CCAG-(UAGA 4501 CG-A)CUGGG -UUGAUAG|G CCGG|AUCUG -GAAGCACC- -(GCGA-)-- GGUGU|GG-A 4561 GGUG|A|CCG GUACUAAUA- GGCCGA-GG| GCUUGU-CCU C-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS S.livida.2 4759 bp RNA RNA 11-JAN-191 DEFINITION Streptomyces lividans TK21. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces lividans TK21. ORGANISM Streptomyces lividans TK21. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U39477 Malgorzata Zarko-Postawka Streptomyces lividans TK21 October 1995 LOCUS SLU39477 3324 bp DNA BCT 25-NOV-1995 DEFINITION Streptomyces lividans rrnB operon, 23S rRNA gene, complete sequence, and 5S rRNA gene, partial sequence. ACCESSION U39477 KEYWORDS . SOURCE Streptomyces lividans. ORGANISM Streptomyces lividans Eubacteria; Firmicutes; Actinomycetes; Streptomycetes; Streptomycetaceae; Streptomyces. REFERENCE 1 (bases 1 to 3324) AUTHORS Zarko-Postawka,M., Hunderuk,M., Mordarski,M. and Zakrzewska-Czerwinska,J. TITLE Sequence analysis of rrnB operon from Streptomyces lividans TK21 JOURNAL Unpublished REFERENCE 2 (bases 1 to 3324) AUTHORS Zarko-Postawka,M. TITLE Direct Submission JOURNAL Submitted (26-OCT-1995) Malgorzata Zarko-Postawka Microbiology, Institute of Immunology and Experimental Therapy, Czerska 12, Wroclaw 53-114, Poland COMMENT NCBI gi: 1072108 FEATURES Location/Qualifiers source 1..3324 /clone="pURR64" /strain="TK21" /organism="Streptomyces lividans" rRNA 42..3141 /gene="rrnB" /product="23S rRNA" rRNA 3241..>3324 /gene="rrnB" /product="5S rRNA" BASE COUNT 761 a 760 c 1124 g 679 t ORIGIN BASE COUNT 711 a 707 c 1057 g 625 t 1659 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG CCAAGUUUU- --UAAGGGCG CACGGUGGAU 121 G|CCUUGG|C ACCAGG|AA| CC-GAUGAAG GA|CGUG(GG AG-GC-)C|- ACG-AUAGGC 181 CCCGGG|-GA GC-(G-UCAA CCA-)GGCUU UG-AUC-CGG GGGUG|UCCG AAUGGG(GAA 241 A)CCC|GGCA GUC-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --gucaug)- GGCUGUC-AC CC-GCUGCU( 481 GA-ACACA-- UA)GGC-AGU -GUG--GAG- G-GAAC|GC- GGGGAAGU|G A(AACA)UCU 541 CAGUA-CCCG CAG-AAGAGA AAAC(--ACC --)GUGAU|U CC-GGGAGUA GU(GGCGA)G 601 CGA-AAC-CG GA-UGA-GGC CAAAccguau -acgugugag accc-(ggca -)----gggg 661 uugcgugugc gggguugugg gaucucucuu ------uac- caguc(-ugc c-)ggcugug 721 a---gacgag ucagaaaccg uug-augu-a ggcGAAg-ga cau(g-cgaa a)g-guccgg 781 |c(gua)gaG GG(UAAGACC )CCCGU-Agu c-gaaacguc agc-gg-cuc guu------- 841 ---------- ---ugagaga caccc---AA GUAGCACGGG G(CCCGAG-A AA)UCCCGUG 901 UGAAUCU-GG C-GG(GACCA C)CC-GCU-A AGCCUAA--- -AUAUUCCCU GGUGACCGAU 961 AGCG-GA--U AGUACC(GUG A)-GGGA-AU GGUGAAAA-G UACCGC(GG- GA-)GCGGA- 1021 -GUGAAA-UA GUACCUGAAA CCGU-GUGCC UACAA-G-CC GUGGGAGCGu -c---gaug- 1081 ag------(- ---cuug--) -------cuc cauccu--CG UGACUGCGUG CCU(UUU-GA 1141 AG|A)AUGA| -GCCUGCGAG UUUGCGGUG- UGUUGC-GAG GUUAACC--( --gggu)-GG 1201 G-GAAGCCGU AGC(GAAA-) GCGAGUCC(G AA-UA)GGGC GU-------- --(------- 1261 ----)----- ----uuu-ca g-UAGCACGC UCAA-GACCC GAAGC-GGA- GUGA-UCUAG 1321 CCAUGGC|GA GGUUGAAGCG GAGG(UAAG) AG-GUCGUGG AGGACCGAAC C-CACCAGG( 1381 -GUUGAAAA) CCUGG|GGG- AUGAC-CUGU GGUUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 CCGUGAUAGC UGGUUCUCCC CGAAAUGCAU (-UUAG)GUG CAGC|-GUCG UGUGU---u| 1501 -ucu|UGACG G|AGGUAG|A GC-ACUGG-A UAGGCGA-UG |-GGCCC(ua cc-)GGGUUA 1561 CUGACCUUAG -CCAAACUCC GAA-UG-|CC G-G-U-A--- agug--aga| gcg-CGGCAG 1621 UGAGAC--UG U-GGGG(GAU AAG)CUCCAU -GGUC-GAGA GGG(-AAACA G-)CCCAGAG 1681 CAUCGACUAA G-GC|CCCU- AAGCG-UACG -C-UAA-GUG ------GGAA AGGAUGUG-G 1741 AGUCGCACA- GACAACCAGG AGGU--GC(U UAGAAGCA)G CCAC-CCU|U (GAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CUA GU-GAU-UC- -CGC|GCCGA CAAU-GUAG- 1861 CGGGGCUCAA GCGUA-C|C| GCCGAAGUC| GUGU|Cauug cagc---(aa uu---agggc 1921 -(caac)-gc cug------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -uauggaug- GG-UAGGGGA G|-----CGU 2221 C-GUG-UG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --C-CGGG-U 2341 GAAGCAG-C- C-GC(-GGAA -)GCG-AGUU GUGG|ACGGU U-CACGAGUG AGAAUGC-AG 2401 GC|AUG-AGU A--GCGAU-A CAAACG(UGA GAAA)CGUUU G|CGCC-GAU UGACUAAGGG 2461 UUCCUG-GGU CAAG-(CUGA U)CU|G-CCC AGGGUAAGU| CGG|G-ACCU AAGGCAAGGC 2521 C(GACA)--- -CGU-AGUCG AUGG-AUAAC CGG-(UU-GA UAUU)C-CGG U|AC|cc-g- 2581 cu-gug-aag c-gucaaaca ucgagcaucg ug-augcuaa ggccgugaag c-g-----cc 2641 cuga-ucuc( uuc-g)-agu ugagggg-ag ugguggagcc gccgaaccaa gcggu-uagu 2701 aggugaguga u------ggg g--uga-cgc aggaaggua- gucc-a-|uc c-ggg(cg-- 2761 gugguu-gu- --)cc-cggg -|guaa---- ---------- ----ggu-gu aggcc----- 2821 ---ggug-ug uagg(ua-aa -u-)cc|g-- cacaccuugu ---------- ggcu-gagac 2881 cug-augc|c ga-|------ -------gcc g(-auug--) uggu------ ------gaag 2941 --uggau-ga uccu-aug-| cugucgagaa a-agccuc-u a-gcga---- ------gu-u 3001 ucaugg--cg g|C|CCGUAC CCUAAACC(G ACUCA)GG|U GG-UCAGGU- A-(GAGAA)U 3061 ACCGAGGCGU ||UCGGGUGA ACUAUGGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGCCCCCGUA AC(-UUCG)G GAGAAGGGGG |GCCACA--- -CCUGGug-- -----acgag 3181 u(-uuugc)a cucug----- --agcuggg- --ggugg-C| C(GCA)GAGA CCAGCGA-GA 3241 AG|CGACU-- ---GU(UUAC UAAAA)ACAC AGGUCCGUG| CGAAGCC(GU AA------)G 3301 GCGAUGU-AU ACGGACUGA- CGCCUGCCCG GU|GCUG-GA A-CGUUAAGG GGACCGGUUA 3361 GUcac-au-- (U-UCG)gug ug------GC GA-AGCUGAG AACUUAAGCG |CCAGUAAAC 3421 |-GGC|GGUG GU(AACUAUA )AC-AUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-CUUCUCG ACUGUCUCAA CCAUAGGCCC 3541 G|GUGAAAUU |GCACUAC-G AG(UAAAGAU G)CU-GUUUC GCGCAGC-AG GACGGAAAGA 3601 CCCCG-GG|A CCU-UUACUA C|-GUUUGAU AUU|GGUGUU CGGUUCGGCU UGUGUAGGAU 3661 AGCUGGGAGA CUUUGAAG-- CUCGCAC(GC CA)GUGUGGG UGGAGUCGUC -G-UUGAAAU 3721 ACCAGU|CUG G-UCGUGCUG GAU-GUCUAA -CCUGGG--- -UCCG(--UG -AUC)-CGGA 3781 UCAGG-GACA GUGUCUGAUG GG-UAGUUUA ACUG(GGG)C GGUU|GC-UC C(UAA-AGAG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGCCUGG(U UGGCAA)UCA GGUGUU-GA| 3901 GU(G|UAAGU )GCACAAGGG AGCUUGACUG UGAGAC(CGA CGG)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |ACUAGUGAU CCGGCGGUGG CU(UGUGGA) AGC|GCCGUC GCUCAAC|GG 4021 AUAAAAGGUA CCC|CGGG|G AUAACAG|GC UGA--UCUUC CCCAAGA(G- UCC-AUA)UC 4081 GACGGGA-UG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GGAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGUGGUAC G---AGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GCUGUG C--|-G-UAG 4261 GAGUCUU|GA -|GAAGGGC- UGU------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGACGG|ACG AACCUCUGGU GUGCCAGU|U GUCCU(GC-C A-)AGGGCA- UGGCUGGUUG 4381 GCU-ACGUUC GGGAGGGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAGCC UGCUUC|GAG 4441 AUGAGGACUC C|CA|CCCC- -(CUUGA-)- -GGGG--UU- AAGG|-CU|C CCAG-(UAGA 4501 CG-A)CUGGG -UUGAUAG|G CCGG|AUCUG -GAAGCACC- -(GCGA-)-- GGUGU|GG-A 4561 GGUG|A|CCG GUACUAAUA- GGCCGA-GG| GCUUGU-CCU C-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS M.luteus 4759 bp RNA RNA 11-JAN-191 DEFINITION Micrococcus luteus. ACCESSION No information KEYWORDS No information. SOURCE Micrococcus luteus. ORGANISM Micrococcus luteus. REFERENCE 1 (bases 1 to 31636) AUTHORS Schleifer,K.H. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X06484 LOCUS MLURN23S 3094 bp ds-DNA BCT 15-DEC-1989 DEFINITION Micrococcus luteus 23S rRNA gene. ACCESSION X06484 KEYWORDS 23S ribosomal RNA. SOURCE Micrococcus luteus. ORGANISM Micrococcus luteus Prokaryota; Bacteria; Firmicutes; Gram-positive cocci; Micrococcaceae. REFERENCE 1 (bases 1 to 3094) AUTHORS Schleifer,K.H. JOURNAL Unpublished (1988) see COMMENT for author address STANDARD simple automatic REFERENCE 2 (bases 1 to 3094) AUTHORS Regensburger,A., Ludwig,W., Frank,R., Bloecker,H. and Schleifer,K.H. TITLE Complete nucleotide sequence of a 23S ribosomal RNA gene from Micrococcus luteus JOURNAL Nucleic Acids Res. 16, 2344-2344 (1988) STANDARD simple automatic COMMENT [Unpublished (1988) see COMMENT for author address] enum. 1 to 3094. [Nucleic Acids Res. 16, 2344-2344 (1988)] enum. 1 to 3094.*source: strain=dsm 20030 [1 ] Author address Schleifer K. H., Lehrstuhl fur Mikrobiologie, Technische Universitat Munchen, Arcisstr. 21, D-8000 Munchen 2, Fed Rep of Germany. Submitted (26-JAN-1988) on tape to the EMBL data library. FEATURES Location/Qualifiers rRNA 1..3094 /note="23S rRNA" BASE COUNT 736 a 704 c 1029 g 625 t ORIGIN BASE COUNT 736 a 704 c 1029 g 625 t 1665 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GU GAAAGUUUC- --CAAGGGCG CAUGGUGGAU 121 G|CCUUGG|C AACAGG|AG| CC-GAAGAAG GA|CGUG(GG AA-UC-)U|- GCG-AUAAGC 181 CUGGUG|-GA GUC(G-AUAA CCG-)GACGU UG-AGA-CCA GGAUU|UCCG AAUGGG(GAA 241 A)CCC|CGCA CGA-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----cgug)- UCGUGUG-AC CC-CCGGUU( 481 GA-ACACA-- UA)GGC-CGG -GUG--GAG- G-GAAC|GU- GGGGAACU|G A(AACA)UCU 541 CAGUA-CCCA CAGGAAGAGA AAAC(-AAAA --)GUGAU|U CC-GUUAGUA GU(GGCGA)G 601 CGA-ACG-CG GA-UGG-GGC UAAAccguau -gugugugau accc-(ggca -)----gggg 661 uugcaugugc gguguugugg gccccuccuu ------guc- auguc(-ugc c-)ggcaugg 721 c-----gcag uga--ggugc gggcauau-a gacGAAc-ca g-u(g-ugga u)g-cuggac 781 |c(gua)gaG GG(UGAGAGU )CCCGU-Agu c-gaaaugug uuccgccgcu guu------- 841 ---------- ---ggagggu ugccc---GA GUAGCACGGG G(CCCGAG-G AA)UCCCGUG 901 UGAAUCU-GC C-AG(GACCA C)CU-GGU-A AGCCUGA--- -AUACUACCU GUUGACCGAU 961 AGCG-GAU-C AGUACC(GUG A)-GGGA-AU GGUGAAAA-G UACCCC(GG- GA-)GGGGA- 1021 -GUGAAA-UA GUACCUGAAA CCAU-GUGCC UACAA-A-CC GUUGGAGCCU --C------- 1081 --------(- ---cuugu-) ---------- -----G-GGG UGACAGCGUG CCU(UUU-GA 1141 AG|A)AUGA| -GCCUGCGAG UUAGUGAUA- CGUGGC-GAG GUUAACCC-( --gugu)-GG 1201 G-GAAGCCGU AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC Ga-------- ---------- 1261 ---------- -----uu-ga G-UCGCGUGU CCUA-GACCC GAAGC-GGA- GUGA-UCUAC 1321 CCAUGGC|CA GGUUGAAGCG CGUG(UAAG) AA-CGCGUGG AGGACCGAAC C-CACUUCA( 1381 -GUUGAAAA) UGGAG|GGG- AUGAG-UUGU GGGUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 CCGUGAUAGC UGGUUCUCCC CGAAAUGCAU (-UUAG)GUG CAGC|-GUCA CGUGU---u| 1501 -UCU|UCCCG G|AGGUAG|A GCUACUGG-A UGGACGA-UG |-GGCCC(ua caa)GGGCUA 1561 CUGACUUCAG -CCAAACUCC GAA-UG-|CC G-G-G-A--- agug--aga| GCG-UGGCAG 1621 UGAGAC--UG U-GGGG(GAU AAG)CUUCAU -AGUC-GAGA GGG(-AAACA G-)CCCAGAC 1681 CACCGGUUAA G-GC|CCCU- AAGCG-UGUG -C-UAA-GUG ------GGAA AGGAUGUG-G 1741 AGUUGCUGA- GACAACCAGG AGGUUGGC(U UAGAAGCA)G CCAC-CCU|U (GAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CAA GU-GAU-UC- -CGC|GCCGA CAAU-GUAG- 1861 CGGGGCUCAA GUACA-C|C| GCCGAAACC| GUGG|cauuc agu----(uu u--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -gcuggaug- GG-UAGGGGA G|-----CGU 2221 C-GUU-CA-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --C-GAGG-U 2341 GAAGCCA-G- C-GG(-GUAA -)CUU--CUG GUGG|AUUGU G-GACGAGUG AGAAUGC-AG 2401 GC|AUG-AGU A--GCGAA-A GACGGG(UGA GAAA)CCCGU C|CGCC-GGA UGACUAAGGG 2461 UUCCAG-GGU CAAG-(CUAA U)CU|G-CCC UGGGUAAGU| CGG|G-ACCU AAGGCGAGGC 2521 C(GACA)-G- GCGU-AGUCG AUGG-ACAAC GGG-(UU-GA UAUU)C-CCG U|AC|ca-g- 2581 ug-aag-aac c-gccca-ug cugagccggu ga-uacuaac cgccc-gaac caucccga-- 2641 -accu-cgu( cuuug)acgg ggucgg--ug augggga-gc gcgggaccug aaccgg--gg 2701 aggcaagcgc auuaacaggu g--uga-cgc aggaaggua- gccg-g-|gc c-ggg(ca-- 2761 auggaaauga --)cc-uggu -|cuaa---- ---------- ---gggu-gu aggg------ 2821 --cugcc-gg uagg(ua-aa -u-)cc|g-- ccggcuguau ---------- gccu-gagac 2881 cug-augg|g cg-|------ ------ccca c(--aug--) guggg----- ------ugau 2941 --ccggu-ga uccu-aug-| cugccuagaa a-agcauc-g gcgcg----- ------ag-g 3001 uucaaa--cu g|c|CCGUAC CCUAAACC(G ACACA)GG|U GG-UCAGGUC A-(GAGAA)U 3061 ACUAAGGCGA ||UCGAGAGA AUCAUGGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGCCCCCGUA AC(-UUCG)G GAGAAGGGGG |gcccca--a -ccuuga--- -----gcacc 3181 a(-cgugc)u ggugu----- ---gagggg- aucGGGG-C| C(GCA)GAGA CCAGGGG-GA 3241 AG|CGACU-- ---GU(UUAU CAAAA)ACAC AGGUCCAUG| CGAAGUC(GU AA------)G 3301 ACGAUGU-AU AUGGACUGA- CUCCUGCCCG GU|GCUG-GA A-GGUUAAGG GGACCCGUUA 3361 GC-------- (U-UCG)--- --------GC GA-AGCGGAG AACUUAAGCC |CCAGUAAAC 3421 |-GGC|GGUG GU(AACUAUA )ACCAUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGAGUAAC GA-CUUCCCC GCUGUCUCAA CCAUGAACUC 3541 G|GCGAAAUU |GCAUUAC-G AG(UAAAGAU G)CUCGUUAC GCGCAGA-AG GACGGAAAGA 3601 CCCCG-UG|A CCU-UUACUA U|AGUUUGGU AUU|GGUGUU CGGUGUGGCU UGUGUAGGAU 3661 AGGUGGGAGA CUGUGAAG-- CGGGCAC(GC CA)GUGUUCG UGGAGUCGUC -G-UUGAAAU 3721 ACCACU|CUG G-UCACUCUG GAU-AUCUAA -CUUCGG--- -CCCG(--UG -AUC)-CGGG 3781 UCAGG-GACA GUGCCUGAUG GG-UAGUUUA ACUG(GGG)C GGUU|GCCUC C(UAA-AAUG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGCCUGG(U UGGUAA)UCA GGUGUC-GA| 3901 GU(G|CAAGU )GCACAAGGG AGCUUGACUG UGAGAG(UGG CAG)CUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |ACUAGUGAU CCGGCGGCUC GU(UGUGGA) ACG|GCCGUC GCUCAAC|GG 4021 AUAAAAGGUA CCU|CGGG|G AUAACAG|GC UGA--UCUUG CCCAAGA(G- UCC-AUA)UC 4081 GACGGCA-U- GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GGAG 4141 U---A)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|UCUGCG C-G|CG-UUG 4261 GAAAUUU|GA -|GAAGGUC- UGU------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGACGG|ACG AACCUCUGGU AUGUCAGU|U GUACC(GC-C A-)GGUGCA- UGGCUGAUUA 4381 GCU-ACGUUC GGGAUGGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAGCC GGCUUC|GAG 4441 AUGAGAUUUC C|UU|GCCCC U(-UUG--)A GGG-U--GU- GAGG|-CC|C CCAG-(CUAG 4501 AACA)CUGGG -UUGAUAG|G CUGG|AUGUG -GAAGCGAGG A(CUGAA)GA CUCGU|GA-A 4561 GCUG|A|CCA GUACUAAUA- GGCCGA-ug| ACUUAC-ACA CA------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS A.utahensi 4759 bp RNA RNA 11-JAN-191 DEFINITION Actinoplanes utahensis. ACCESSION No information KEYWORDS No information. SOURCE Actinoplanes utahensis. ORGANISM Actinoplanes utahensis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X81575 LOCUS AU23SRNA 1114 bp RNA BCT 26-SEP-1994 DEFINITION A.utahensis 23S rRNA gene. ACCESSION X81575 KEYWORDS 23S ribosomal RNA; 23S rRNA gene; 5S ribosomal RNA; 5S rRNA gene. SOURCE Actinoplanes utahensis. ORGANISM Actinoplanes utahensis Prokaryota; Bacteria; Firmicutes; Irregular asporogenous rods; Actinomycetes and related organisms; Actinoplanetes. REFERENCE 1 (bases 1 to 1114) AUTHORS Mehling,A., Wehmeier,U.F. and Piepersberg,W. TITLE Use of the 'reverse' sequencing primer for random amplified polymorphic DNA (RAPD) fingerprinting assays of actinomycetes JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 1114) AUTHORS Piepersberg,W.M. TITLE Direct Submission JOURNAL Submitted (13-SEP-1994) to the EMBL/GenBank/DDBJ databases. W.M. Piepersberg, Bergische Univ. Gesamthochschule, Wuppertal, Inst. fuer Chemische Mikrobiologie, Gaussstr. 20, 42097 Wuppertal, FRG STANDARD full automatic COMMENT NCBI gi: 550307 FEATURES Location/Qualifiers source 1..1114 /organism="Actinoplanes utahensis" /strain="ATCC 31044" rRNA <1..993 /product="23S ribosomal RNA" primer_bind 1..16 rRNA 1092..>1114 /product="5S ribosomal RNA" primer_bind 1099..1114 BASE COUNT 243 a 260 c 349 g 262 t ORIGIN BASE COUNT 221 a 230 c 319 g 223 t 3766 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)-~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ 1201 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~(~~~~~~~ 1261 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 1381 ~~~~~~~~~) ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|~~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~gaa ac(agcuaug )ACCAUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-CUUCCCC ACUGUCUCAA CCACAGGCCC 3541 G|GCGAAAUU |GCAGUAC-G AG(UAAAGAU G)CUCGUUAC GCGCGGC-AG GACGGAAAGA 3601 CCCCG-GG|A CCU-UUACUA U|AGCUUGAC AUU|GGUAUC UGAAUUCGAU UGUGUAGGAU 3661 AGGUGGGAGA CUGUGAAG-- CUCGGAC(GC CA)GUUCGGG UGGAGUCAUU -G-UUGAAAU 3721 ACCACU|CUG U-UGGGUUUG GGU-AUCUAA -CUUGCG--- -GCCC(--ug -auc)-GGGU 3781 CGAGG-GACA GUGUCUGGUG GG-UAGUUUA ACUG(GGG)C GGUU|GCCUC C(UAA-AGGG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGCCUGG(U UGGCAA)UCA GGUGUU-GA| 3901 GU(G|UAAGU )GCAUAAGGG AGCUUGACUG UGAGAC(UGA CGG)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |ACUAGUGAU CCGGCACUUG CG(UGUGGA) AGC|GGUGUC GCUCAAC|GG 4021 AUAAAAGGUA CCC|CGGG|G AUAACAG|GC UGA--UCUUC CCCAAGA(G- UCC-AUA)UC 4081 GACGGGA-UG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GG-CU(GUAG 4141 C---A)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGUCAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GCCGUG C-G|CG-UUG 4261 GAUACUU|GA -|GAAGGGC- UGU------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGACGG|ACG AACCUCUGGU GUGCCAGU|U GUUCU(GC-C A-)AGAGCA- CGGCUGGUUG 4381 GCU-ACGUUC GGAAGGGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAGCU CGCUUC|GAG 4441 AUGAGGUAUC C|CA|CCAC- -(CUUGA-)- -GUGG--GU- AAGG|-CU|C CCAGc(UAGA 4501 CU-A)CUGGG -UUGAUAG|G CCGG|AGAUG -UAAGCACG- -(GUAA-)-- CGUGU|UG-A 4561 GUUG|A|CCG GUACUAAUA- GGCCGA-GG| GCUUAA-CCA C-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS P.freudenr 4759 bp RNA RNA 18-SEP-1997 DEFINITION Propionibacterium freudenreichii. subsp. ITS shermanii partial 16S rRNA, 23S rRNA and 5S rRNA genes plus; 16S ribosomal RNA; 16S rRNA; 23S ribosomal RNA; 23S rRNA; 5S ribosomal RNA; 5S rRNA gene; internal transcribed spacer; ITS. ACCESSION Y10819 KEYWORDS 16S ribosomal RNA; 16S rRNA; 23S ribosomal RNA; 23S rRNA; 5S ribosomal RNA; 5S rRNA gene; internal transcribed spacer; ITS. SOURCE Propionibacterium freudenreichii. subsp. ITS shermanii partial 16S rRNA, 23S rRNA and 5S rRNA genes plus. ORGANISM Propionibacterium freudenreichii. REFERENCE 1 (bases 1 to 5116) AUTHORS Dasen,G., Smutny,J., Teuber,M. and Meile,L. JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 5116) AUTHORS Dasen,G. TITLE Direct Submission JOURNAL Submitted (27-JAN-1997) G. Dasen, ETH, Institute of Food Science, Laboratory of Food Microbiology, Schmelzbergstr. 9, LFO-G24.2, 8092 Zuerich, SWITZERLAND STANDARD No information REFERENCE 3 (bases 1 to 5116) AUTHORS Dasen,G. TITLE Direct Submission JOURNAL Submitted (02-JUN-1997) G. Dasen, ETH, Institute of Food Science, Laboratory of Food Microbiology, Schmelzbergstr. 9, LFO-G24.2, 8092 Zuerich, SWITZERLAND STANDARD No information REFERENCE 4 (bases 1 to 2137) AUTHORS Dasen,G. TITLE Direct Submission JOURNAL Submitted (16-JUL-1997) G. Dasen, ETH, Institute of Food Science, Laboratory of Food Microbiology, Schmelzbergstr. 9, LFO-G24.2, 8092 Zuerich, SWITZERLAND STANDARD No information REFERENCE 5 (bases 1 to 5116) AUTHORS Dasen,G. TITLE Direct Submission JOURNAL Submitted (18-SEP-1997) G. Dasen, ETH, Institute of Food Science, Laboratory of Food Microbiology, Schmelzbergstr. 9, LFO-G24.2, 8092 Zuerich, SWITZERLAND STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: Y10819 BASE COUNT 733 a 683 c 1030 g 666 t 1647 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- ------guGA CAAGCUACU- ---AAGUGCG AUCGGUGGAU 121 G|CCUAGG|C ACCAAG|AG| CC-GAUGAAG GA|CGUU(GU AA-CC-)U|- GCG-AUAAGC 181 CCUGGG|-GA GCU(G-GUAA ACG-)AGCUU UG-AUC-CGG GGAUG|UCCG AAUGGG(GAA 241 A)CCU|CGAA GGU-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -----gacca guuuagcu)- ACUGGCG-AC CG-CCGCCU( 481 GA-AUGUA-- UA)GGG-CGG -UUG--GAG- G-GAAC|GU- GGGGAAGU|G A(AACA)UCU 541 UAGUA-CCCA CAGGAAGAGR AAAC(-AACC --)GUGAW|U CC-GUGAAUA UU(GGCGA)G 601 CGA-AAG-CG GA-AGA-GGC CAAACCGGA- -GUGUGUGAU AGCC-(GGCA -)----GGUG 661 UUGCAUGUGC GGGGUUGUGG GAAGCGUUUU ------GAC- UGAAC(-UGC C-)GUGAGGU 721 C---ggagag ugauaaagga uug-auga-a gcaGAAg-cg u-c(u-ggga a)g-gcgcgg 781 |c(aua)gaU GG(UGAUACC )CCUGU-AUG C-guaaguug auc-u--cuc u--------- 841 ---------- -cuuaauguu uuccc---AA GUAGUACGGA A(CCCCUG-A AA)UYCCGUA 901 CGAAUCU-GG C-G-(GACCA C)CC-GUU-A AGCCUAA--- -AUACBCCUU GGUGACCGAU 961 MGCG-GACAA GUACCC(GUG A)-GGGAAAG GGUGAAAAUG UACCCC(CGG GA-)GGGGA- 1021 -GUGAAA-UA GUMCCUGAAA CCGA-UCGCA UACAA-U-CC GUCGGAGCCU --GC-C---- 1081 --------(- ---cuugu-) ---------- ---GGU-GGG UGACGGCGUG CCU(UUU-GR 1141 AA|G)AAUG| AGCCUGCGAG UUAGUGGUG- UGUGGC-GAG GUUAACCC-( --GUGU)-GG 1201 G-GAAGCCGU AGC(GAAA-) GCGAGUCC(G AA-UA)GGGC GU-------- ---------- 1261 ---------- -----uu-ga G-UCGCAUGC UCUA-GACCC GAAGC-GGU- GUGA-UCUAU 1321 CCAUGGC|CA GGGUGAAGCG ACGG(UAAG) AC-GUCGUGG AGGCCCGAAC C-CACCAGG( 1381 -GUUGCAAA) CCUGG|GGG- AUGAG-CUGU GGAUAGGGGU (-GAAAG)GC CAAUCAAACA 1441 CCGUGAUAGC UGGUUCUCCC CGAAAUGCAU (-UUAG)GUG CAGC|-GUCA UGUGU---U| 1501 -UCU|UGUCG G|AGGUAG|A GC-ACUGG-A UGGUCUA-GG |-GGGCU(ua cc-)AGCUUA 1561 CCGAAAUCAG -CCAAACUCC GAA-UG-|CC G-A-C-A--- agug--agA| GCA-UGGCAG 1621 UGAGAC--GG C-GGGG(GAU AAG)CUUCGU -CGUC-GAGA GGG(-AAACA G-)CCCAGAU 1681 CAUCAGCUAA G-GC|CCCU- AAGUG-GUGA -C-UAA-GUG ------GAAA AGGACGUG-G 1741 AGUUGCGGA- GACAACCAGG AGGUUGGC(U UGGAAGCA)G CCAU-CCU|U (GAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CAA GU-GAU-UC- -UGC|ACCGA CAAU-UUAG- 1861 CGGGGCUCAA GUCAU-C|C| GCCGAAGCU| GUGG|caucu acgcgu-(gu aucc--gg-- 1921 caucc(uuug )gggu---gu ccag------ ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)--gu gcguggaug- GG-UAGGGGA G|-----CGU 2221 U-GUG-UG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-GCGU-U 2341 GAAGCGG-C- G-GG(-GUGA -)CCC-GGUC GUGG|AGUGC A-CGCAAGUG AGAAUGC-AG 2401 GC|AUG-AGU A--GCGUA-U GACGGG(UGA GAAA)CCCGU C|CGCC-GAA UAUCCAAGGG 2461 UUCCAG-GGU CAAG-(CUAA U)CU|G-CCC UGGGUGAGU| CGG|G-UCCU AAGGCGAGGC 2521 C(GACA)-G- GCGU-AGUCG AUGG-ACAAC GGG-(UU-GA UAUU)C-CCG U|AC|cg-g- 2581 cg-cga-gaa c-gaucc-ug ccgaggugag ug-augcuaa gcaugcaagg cggucgug-- 2641 ----ggggc( uuc-g)guuc ccugau---- -cguuga-gu cuguaacccg aucuuguagu 2701 aggcaagcug c------gga g--gga-cgc aggaaggua- gucu-gg|ca c-cg-(ua-- 2761 uugguu-ug- --)-c-ggug -|uuaa---- ---------- ---gccu-gu aggg------ 2821 -ugucug-gc cagg(ua-aa -u-)cc|g-- gucggacgug ---------u gccu-gagag 2881 gug-auga|g ug-|------ ----gugcca c(-uuuu--) gugguacg-- ------uauc 2941 --cggau-ga uccu-aug-| cugccuagaa a-aucuucgu gagcga---- ------gu-u 3001 cucgag--cu g|C|CCGUAC CCCAAACC(G ACACU)GG|U GG-AUAGGU- A-(GAGAA)U 3061 ACCAAGGCGA ||UCGAGAUA AUCAUGGUG- ---------- ----AAGGAA CUCGGCAAAA 3121 UCCUCCCGUA AC(-UUCG)G AAUAAGGGAG |ACUGGAggc -gugacg--- -------gca 3181 g(-uuuac)u ugucgg---- --ugcgucg- ---auag-U| C(GCA)GAGA AUAGGCC-CA 3241 AG|CGACU-- ---GC(UUAC UAAAA)GCAC AGGUCCGUG| CUAAGUC(GA AA------)G 3301 ACGAUGU-AU ACGGACUGA- CUCCUGCCCG GU|GCUCKGA A-GGUUAAGG GGACGUGUUA 3361 GCacu----- (U-UUG)--- -------UGC GA-GGCACUG AACUUAAGCC |CCAGUAAAC 3421 |-GGC|GGUG GU(AACUAUA )ACCAUC|C( UAA)GGkAGC G-AAAUUCCU U|GUCGGG(k 3481 AAGU)UCCGR C|CUGSACGA AUGGAGUAAC GA-CUUGGGC GCUGUCUCCA CCAUGAACUC 3541 G|GCGAAAUU |GCAUUAC-G AG(UAAAGAU G)CUCGUUAC GCGCACA-GG GACGGAAAGV 3601 NCCCG-GG|A CCU-UUACUA U|AGUUUGGU AUU|GGUGAU CGGUACGACU UGUGUAGGAU 3661 AGGUGGGAGA CUUUGAAG-- CGGUCAC(GC UA)GUGAUUG UGGAGUCAUU -G-UUGAAAU 3721 ACCACU|CUG G-UCGUUCUG GUU-AUCUAA -CCUAGG--- -UCCG(--UG -AUC)-CGGA 3781 UCAGG-GACA GUGCCUGAUG GG-UAGUUUG ACUG(GGG)C GGUC|GCCUC C(MAA-AAGG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGCCUGG(U UGGUAA)UCA GGUGUU-GA| 3901 GU(G|UAAGU )GCACAAGGG AGCUUGACUG UGAGAC(AGA CAU)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |ACUAGUGAU CYUCUGGUGG AU(UGUGGA) AUC|GCCAGA ACUCAAC|GG 4021 AUAAAAGGUA CCC|CGGG|G AUAACAG|GC UGA--UCUUU CCCGAGC(G- CUC-ACA)GC 4081 GACGGAA-UG GN-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GGAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGCAC GCGARGCUGG 4201 GGKUAAGAAC |GUC(GUGA) -GACAGUU-C CGGKCCCUAU ACC|--GCUG C-S|CG-Umg 4261 k-aUCUU|GA -|GAGGGC-- UGU------- -------CCU (UAGUAC(GC AA)GGACC)G 4321 GGACGG|ACC AACCUCUGGU GUGCCAGU|U GUUCC(AC-C A-)GGAGCA- UGGCUGGUUG 4381 GCU-ACGUUG GGGAGUGAUA ACCGCU(GAA AGCAUCUA)A GUGGGAAGCA CGCUUC|AAG 4441 AUGAGGGUUC C|UG|CACA- -(GUUAA-)- -UGUG--GU- AAGG|-CC|C CCGG-(UAGA 4501 CC-A)CCGGG -U-GAUAG|G UCGG|AUGUG -GAAGCAUG- -(GUGA-)-- CAUGU|GG-A 4561 GCUG|A|CCG AUACUAAGU- GGCCGA-GG| GCUUGUCCCA CA------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS M.avium 4759 bp RNA RNA 11-JAN-191 DEFINITION Mycobacterium avium. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium avium. ORGANISM Mycobacterium avium. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X74494 ID MA23SRNA standard; DNA; PRO; 3401 BP. XX AC X74494; XX DT 04-AUG-1994 (Rel. 40, Created) DT 04-AUG-1994 (Rel. 40, Last updated, Version 2) XX DE M.avium 23S ribosomal RNA gene XX KW 23S ribosomal RNA. XX OS Mycobacterium avium OC Prokaryota; Bacteria; Firmicutes; Irregular asporogenous rods; OC Actinomycetes and related organisms; Mycobacteriaceae; OC Mycobacterium. XX RN [1] RP 1-3401 RA Van der Giessen J.W.B.; RT ; RL Submitted (09-AUG-1993) to the EMBL/GenBank/DDBJ databases. RL J.W.B. Van Der Giessen, Inst of Infectious Diseases & Immunology, RL Dept of Bacteriology, School of Veterinary Medicine, Yalelaan 1, PO RL Box 80.165, 3508 TD Utrecht, NETHERLANDS XX RN [2] RP 1-3401 RA Van der Giessen J.W.B., Haring R., Van der Zeijst B.A.M.; RT "Comparison of the 23S ribosomal RNA genes and the spacer region RT between the 16S and 23S rRNA genes of the closely related RT Mycobacterium avium and Mycobacterium paratuberculosis and the RT fast-growing Mycobacterium phlei"; RL Microbiology 140:1103-1108(1994). XX FH Key Location/Qualifiers FH FT source 1..3401 FT /organism="Mycobacterium avium" FT /sub_species="serotype 8" FT /strain="23435" FT /clone="MAP1,MAP2,MAP3,MAI" FT rRNA 1..20 FT /product="16S rRNA" FT misc_RNA 21..294 FT /note="spacer region" FT rRNA 295..3401 FT /product="23S rRNA" XX SQ Sequence 3401 BP; 811 A; 811 C; 1101 G; 678 T; 0 other; BASE COUNT 756 a 744 c 1006 g 601 t 1652 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- -ugugugu|- --------AA GUAAGUGUU- --UAAGGGCG CAUGGUGGAU 121 G|CCUUGG|C AUCGAG|AG| CC-GAUGAAG GA|CGUG(GG AG-GC-)U|- GCG-AUAUGC 181 CUCGGG|-GA GCU(G-UCAA CCG-)AGCAU UG-AUC-CGA GGAUU|UCCG AAUGGG(GGA 241 A)CCC|AGCA CGA-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --gugaug)- UCGUGUU-AC CC-GUAUCU( 481 GA-AUAUA-- UA)GGG-UGC -G-G--GAG- G-UAAC|GC- GGGGAAGU|G A(AACA)UCU 541 CAGUA-CCCG UAGGAGAAGA AAAC(-AAUU --)GUGAU|U CC-GUCAGUA GU(GGCGA)G 601 CGA--AC-CG GA-ACA-GGC UAAAccgcau -gcauggaca accg-(ggua -)----gggg 661 uugugugugc gggguugugg gauugauaug ------ucu- cagcu(cuac cu)ggcugag 721 g----gguag ucagaaagug ucgugguu-a gcgGAAgugg c-c(u-ggga c)g-gcccgc 781 |c(gua)gaC GG(UGAGAGC )CCGGU-Acg c-gaaaacc- cggcac-cug ccuua----- 841 ---------- ----uaucaa caccc---GA GUAGCAGCGG G(CCCGUG-G AA)UCUGCUG 901 UGAAUCU-GC C-GG(GACCA C)CC-GGU-A AGCCUAA--- -AUACUUCUC GAUGACCGAU 961 AGCG-GAU-U AGUACC(GUG A)-GGGA-AU GGUGAAAA-G UACCCC(GG- GA-)-GGGA- 1021 -GUGAAA-UA GUACCUGAAA CCGU-GUGCC UACAA-U-CC GUCAGAGCCU --c------- 1081 --------(- ---cucgu-) ---------- -----G-GGG UGAUGGCGUG CCU(UUU-GA 1141 AG|A)AUGA| -GCCUGCGAG UCAGGGACA- CGUCGC-GAG GUUAACCC-( --gugc)-GG 1201 G-GUAGCCGC AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC GC--aucccc --(---uuu- 1261 ----)--ggg g----UG-UA G-UGGCGUGU UCUG-GACCC GAAGC-GGA- GUGA-UCUAC 1321 CCAUGGC|CA GGGUGAAGCG CGGG(UAAG) AC-CGCGUGG AGGCCCGAAC C-CACUUAG( 1381 -GUUGAAGA) CUGAG|GGG- AUGAG-CUGU GGGUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 CCGUGAUAGC UGGUUCUCCC CGAAAUGCAU (-UUAG)GUG CAGC|-GUUG CGUGG---u| 1501 -uca|CCACG G|AGGUAG|A GCUACUGG-A UGGCCGA-UG |-GGCCC(ua cu-)aGGUUA 1561 CUGACGUCAG -CCAAACUCC GAA-UG-|CC G-U-G-G--- ugua--aaa| gcg-UGGCAG 1621 UGAGAC--GG C-GGGG(GAU AAG)CUCCGU aCGUC-GAAA GGG(-AAACA G-)CCCAGAU 1681 CGCCGGCUAA G-GC|CCCU- AAGCG-UGUG -C-UAA-GUG ------GAAA AGGAUGUG-U 1741 AGUCGCAGA- GACAACCAGG AGGUUGGC(U UAGAAGCA)G CCAU-CCU|U (GAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CAA GU-GAU-UA- -UGC|GCCGA UAAU-GUAG- 1861 CGGGGCUCAA GCACA-C|C| GCCGAAGCC| GCGG|cacau ucauc--(uu uac------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---g guggaugug- GG-UAGGGGA G|-----CGU 2221 C-CCC-CA-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-UCAG-C 2341 GAAGCU--C- C-GG(-GUGA -)CCG--GUG GUGG|AGGGU G-GGGGAGUG AGAAUGC-AG 2401 GC|AUG-AGU A--GCGAUAA GGCAAG(UGA GAAC)CUUGC C|CGCC-GUA AGACCAAGGG 2461 UUCCUG-GGC CAGG-(CCAG U)CC|G-CCC AGGGUGAGU| CGG|G-ACCU AAGGCGAGGC 2521 C(GACA)-G- G-GU-AGUCG AUGG-ACAAC GGG-(UU-GA UAUU)C-CCG U|AC|cc-g- 2581 ug-uau-ggg c-guccc-ug augaaucagc gg-uacuaac cacccaaaac cggaucga-c 2641 cauuc-ccc( uuc-g)gggg -cguggcgau ucggggcugc gugggaccuu cgcugguagu 2701 agucaagcaa u------ggg g--uga-cgc aggaaggca- gccgua-|cc a-gu-(ca-- 2761 guggua-au- --)-a-cugg g|gcaa---- ---------- ---gccc-gu aga------- 2821 ---gagc-ga uagg(ca-aa -u-)cc|g-- ucgcucacua a--------- uccu-gagag 2881 gug-augc|a ua-|------ -------gcc g(-guug--) aggc------ ------gaau 2941 --ucggu-ga uccu-cug-| cugccaagaa a-agccuc-u a-gcga---- ------gc-a 3001 cauaca--cg g|C|CCGUAC CCCAAACC(A ACACA)GG|U GG-UCAGGU- A-(GAGAA)U 3061 ACCAAGGCGU ||ACGAGAUA ACUAUGGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGCCCCCGUA AC(-UUCG)G GAGAAGGGGG |cccggaaua -ccgugaa-- -------cac 3181 c(-cuugc)g gug------- --ggagcgg- gauucgg-C| C(GCA)GAAA CCAGUGG-GU 3241 AG|CGACU-- ---GU(UUAC UAAAA)ACAC AGGUCCGUG| CGAAGUC(GC AA------)G 3301 ACGAUGU-AU ACGGACUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGACCCGUUA 3361 ACcc------ (G-UAA)--- gg------GU GA-AGCGGAG AAUUUAAGCC |CCAGUAAAC 3421 |-GGC|GGUG GU(AACUAUA )ACCAUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-CUUCCCA ACUGUCUCAA CCAUAGACUC 3541 G|GCGAAAUU |GCACUAC-G AG(UAAAGAU G)CUCGUUAC GCGCGGC-AG GACGAAAAGA 3601 CCCCG-GG|A CCU-UCACUA C|AACUUGGU AUU|GGUGUU CGGUACGGUU UGUGUAGGAU 3661 AGGUGGGAGA CUUUGAAG-- CACAGAC(GC CA)GUUUGUG UGGAGUCGUU -G-UUGAAAU 3721 ACCACU|CUG A-UCGUAUUG GAC-ACCUAA -CGUCGA--- -ACCC(--Uu -AUC)-GGGU 3781 UCACG-GACA GUGCCUGGCG GG-UAGUUUA ACUG(GGG)C GGUU|GCCUC C(UAA-AAUG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAACCUGG(A CGGCAA)UCA GGUGGC-GA| 3901 GU(G|UAAGU )GCACAAGGG AGCUUGACUG CGAGAC(UUA CAA)GUCAAG CAGGGAC(GA 3961 AA)GU-CGGG |ACUAGUGAU CCGGCACCCC CG(AGUGGA) AGG|GGUGUC ACUCAAC|GG 4021 AUAAAAGGUA CCC|CGGG|G AUAACGG|GC UGA--UCUUC CCCAAGA(G- UCC-AUA)UC 4081 GACGGGA-UG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GGAG 4141 C---A)-GGU CCCAAAGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGCAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CUCUAU -CC|GCCGCG C-G|CG-UCA 4261 GAAACUU|GA -|GGAAACC- UGU------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGACGG|ACG AACCUCUGGU AUACCAGU|U GUCCC(AC-C A-)GGGGCA- CGGCUGGAUA 4381 GCC-ACGUUC GGACAGGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAACC UUCUCC|AAG 4441 AUCAGGUUUC U|CA|CCCU- -(UUUAG-)- -AGGG--AU- AAGG|-CC|C CCCG-(CAGA 4501 CC-A)CGGGA -UUGAUAG|G CCAG|ACCUG -GAAGCUCA- -(GUAA-)-- UGAGU|GC-A 4561 GGGA|A|CUG GCACUAACU- GGCCGA-AA| GC~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS M.kansasii 4759 bp RNA RNA 11-JAN-191 DEFINITION Mycobacterium kansas. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium kansas. ORGANISM Mycobacterium kansas. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: Z17212 ID MK23SRRNA standard; DNA; PRO; 3155 BP. XX AC Z17212; XX DT 05-NOV-1992 (Rel. 33, Created) DT 05-NOV-1992 (Rel. 33, Last updated, Version 2) XX DE Mycobacterium kansas for 23S ribosomal RNA. XX KW 23S ribosomal RNA. XX OS Mycobacterium kansasii OC Prokaryota; Bacteria; Firmicutes; Irregular asporogenous rods; OC Actinomycetes and related organisms; Mycobacteriaceae; OC Mycobacterium. XX RN [1] RP 1-3155 RA Fleurbaaij G.A., McNally M., Marich J.E.; RT "The Complete Nucleotide Sequence of Mycobacterium kansasii 23S RT Ribosomal DNA."; RL Unpublished. XX RN [2] RP 1-3155 RA Marich J.E.; RT ; RL Submitted (07-OCT-1992) on tape to the EMBL Data Library by: RL Marich J. E., Syngene Inc., 3252 Holiday Court, Suite 101, La RL Jolla, California, USA, 92037 XX CC *source: strain=ATCC 12478; CC *source: clone=pMBI187, 188, 189, 190, 191, 194, 195, 200; XX FH Key Location/Qualifiers FH FT rRNA 30..3137 FT /partial /product= "23S ribosomal RNA" /citation= FT ([1]) XX SQ Sequence 3155 BP; 775 A; 757 C; 1025 G; 598 T; 0 other; BASE COUNT 775 a 757 c 1025 g 598 t 1604 others ORIGIN 1 ---------- ---------- ---------- ---------- --------ug ugcaa-uuuu 61 auucuuuggu uuuugugu|- --------UU GUAAGUGUC- --UAAGGGCG CAUGGUGGAU 121 G|CCUUGG|C AUCGAG|AG| CC-GAUGAAG GA|CGUG(GG AG-GC-)U|- GCG-AUAAGC 181 CUCGGG|-GA GCU(G-UCAA CCG-)AGCGU GG-AUC-CGA GGAUU|UCCG AAUGGG(GAA 241 A)CCC|AGCA CGA-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --gugaug)- UCGUGUU-AC CC-GCAUCU( 481 GA-AUAUA-- UA)GGG-UGC -G-G--GAG- G-GAAC|GC- GGGGAAGU|G A(AACA)UCU 541 CAGUA-CCCG UAGGAGAAGA AAAC(-AAAA --)GUGAU|U CC-GUAAGUA GU(GGCGA)G 601 CGA-ACG-CG GA-ACAUGGC UAAAccgcac -gcaugggua accg-(ggua -)----gggg 661 uugugugugc gggguugugg gaucgauacg ------ucu- cagcu(cuac cc)ggcugag 721 g----ggcag ucagaaagug ucgugguu-a acgGAAgugg c-c(u-ggga u)g-gucugc 781 |c(gua)gaC GG(UGAGAGC )CCGGU-Acg u-gaaaacc- cggcac-cug ccuug----- 841 ---------- ----uaucaa uuccc---GA GUAGCAGCGG G(CCCGUG-G AA)UCUGCUG 901 UGAAUCU-GC C-GG(GACCA C)CC-GGU-A AGCCUAA--- -AUACUCCUC GAUGACCGAU 961 AGCG-GAA-U AGUACC(GUG A)-GGGA-AU GGUGAAAA-G UACCCC(GG- GA-)GGGGA- 1021 -GUGAAA-GA GUACCUGAAA CCGU-GUGCC UACAA-U-CC GUCAGAGCCC --U------- 1081 --------(- ---uucgu-) ---------- -----G-GGG UGAUGGCGUG CCU(UUU-GA 1141 AG|A)AUGA| -GCCUGCGAG UCAGGGACA- UGUCGC-GAG GUUAACCC-( --gugc)-GG 1201 G-GUAGCCGC AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC GU--aucgcg c-(--gcga- 1261 ----)-gcgu g----ug-ua G-UGGCGUGU UCUG-GACCC GAAGC-GGA- GUGA-UCUAC 1321 CCAUGGC|CA GGGUGAAGCG CGGG(UAAG) AC-CGCGUGG AGGCCCGAAC C-CACUUAG( 1381 -GUUGAAGA) CUGAG|GGG- AUGAG-CUGU GGGUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 CCGUGAUAGC UGGUUCUCCC CGAAAUGCAU (-UUAG)GUG CAGC|-GUUG CGUGU---U| 1501 -UCA|CCACG G|AGGUAG|A GCUACUGG-A UGGCCGA-UG |-GGCCC(ca cu-)aGGUUA 1561 CUGACGUCAG -CCAAACUCC GAA-UG-|CC G-U-G-G--- ugua---ua| GCG-UGGCAG 1621 UGAGAC--GG C-GGGG(GAU AAG)CUCCGU aCGUC-GAAA GGG(-AAACA G-)CCCAGAU 1681 CGCCGGCUAA G-GC|CCCA- AAGCG-UGUG -C-UAA-GUG ------GGAA AGGAUGUG-C 1741 AGUCGCAGA- GACAACCAGG AGGUUGGC(U UAGAAGCA)G CCAC-CCU|U (GAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CAA GU-GAU-UG- -UGC|GCCGA UAAU-GUAG- 1861 CGGGGCUCAA GCACA-C|C| GCCGAAGCC| GCGA|caacc -------(gc aa-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ----gguug- GG-UAGGGGA G|-----CGU 2221 C-CCU-CA-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-UCAG-C 2341 GAAGCUG-C- C-GG(-GUGA -)CCG--GUG GUGG|AGGAU G-GGGGAGUG AGAAUGC-AG 2401 GC|AUG-AGU A--GCGAUAA GGCAAG(UGA GAAC)CUUGC C|CGCC-GAA AGACCAAGGG 2461 UUCCUG-GGC CAGG-(CCAG U)CC|G-CCC AGGGUGAGU| CGG|G-ACCU AAGGCGAGGC 2521 C(GACA)-G- GCGU-AGUCG AUGG-ACAAC GGG-(UU-GA UAUU)C-CCG U|AC|cc-g- 2581 ug-ugu-ggg c-gcccg-ug augaaucagc gg-uacuaac cacccaaaac cggaucga-u 2641 cacuc-ccc( uuc-g)gggg cgugg-aggu cuggggcugc guggagccuu cgcugguagu 2701 agucaagcga u------ggg g--uga-cgc aggaaggca- gccgua-|cc a-gu-(ca-- 2761 guggua-au- --)-a-cugg g|gcaa---- ---------- ---gcca-gu aggga----- 2821 ---gagc-ga uagg(ca-aa -u-)cc|g-- ucgcucacaa a--------- uccu-gagag 2881 gug-acgc|a ua-|------ -------gcc g(-auug--) aggc------ ------gaau 2941 --ucggu-ga uccu-cug-| cugccaagaa a-agccuc-u a-gcga---- ------gc-a 3001 cacaca--cg g|c|CCGUAC CCCAAACC(G ACACA)GG|U GG-UCAGGU- A-(GAGAA)U 3061 ACCAAGGCGU ||ACGAGAUA ACUAUGGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGCCCCCGUA AC(-UUCG)G GAGAAGGGGG |ACCGGaaua -ccgugaa-- -------cac 3181 c(-cuugc)g gug------- --ggagcgg- gauuCGG-U| C(GCA)GAAA CCAGUGA-GA 3241 AG|CGACU-- --uGU(UUAC UAAAA)ACAC AGGUCCGUG| CGAAGUC(GC AA------)G 3301 ACGAUGU-AU ACGGACUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGACCCGUUA 3361 ACcc------ (G-CAA)--- gg------GU GA-AGCGGAG AAUUUAAGCC |CCAGUAAAC 3421 |-GGC|GGUG GU(AACUAUA )ACCAUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-CUUCUCA ACUGUCUCAA CCAUAGACUC 3541 G|GCGAAAUU |GCACUAC-G AG(UAAAGAU G)CUCGUUAC GCGCGGC-AG GACGAAAAGA 3601 CCCCG-GG|A CCU-UCACUA C|AACUUGGU AUU|GGUGUU CGGUACGGUU UGUGUAGGAU 3661 AGGUGGGAGA CUGUGAAA-- CCUCAAC(GC CA)GUUGGGG UGGAGUCGUU -G-UUGAAAU 3721 ACCACU|CUG A-UCGUAUUG GAC-ACCUAA -CGUCGA--- -ACCC(--UG aAUC)-GGGU 3781 UCACG-GACA GUGCCUGGCG GG-UAGUUUA ACUG(GGG)C GGUU|GCCUC C(UAA-AAUG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAACCUGG(A CGGCAA)UCA GGUGGC-GA| 3901 GU(G|UAAGU )GCACAAGGG AGCUUGACUG CGAGAC(CUA CAA)GUCAAG CAGGGAC(GA 3961 AA)GU-CGGG |ACUAGUGAU CCGGCACCUC UG(AGUGGA) AGG|GGUGUC GCUCAAC|GG 4021 AUAAAAGGUA CCC|CGGG|G AUAACAG|GC UGA--UCUUC CCCAAGA(G- UCC-AUA)UC 4081 GACGGGA-UG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GGAG 4141 C---A)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGCAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CUCUAU -CC|GCCGCG C-G|CG-UCA 4261 GAAGCUU|GA -|GGAAACC- UGU------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGACGG|ACG AACCUCUAGU GCACCAGU|U GUCCC(AC-C A-)GGGGCA- CCGCUGGAUA 4381 GCU-ACGUUC GGACAGGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAACC UUCUCC|AAG 4441 AUCAGGCUUC U|CA|CCCAC -(-UUG--)- GUGGG--AU- AAGG|-CC|C CCCG-(CAGA 4501 AC-A)CGGGU -UCGAUAG|G CCAG|ACCUG -GAAGCUCA- -(GUAA-)-- UGAGU|GA-A 4561 GGGA|A|CUG GCACUAACC- GGCCGA-AA| ACUUACcAAc a-------|c aaauaaucgc 4621 aaccac~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS M.gastri 4759 bp RNA RNA 11-JAN-191 DEFINITION Mycobacterium gastri. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium gastri. ORGANISM Mycobacterium gastri. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: Z17211 ID MG23SRRNA standard; DNA; PRO; 1910 BP. XX AC Z17211; XX DT 05-NOV-1992 (Rel. 33, Created) DT 05-NOV-1992 (Rel. 33, Last updated, Version 2) XX DE Mycobacterium gastri for 23S ribosomal RNA. XX KW 23S ribosomal RNA. XX OS Mycobacterium gastri OC Prokaryota; Bacteria; Firmicutes; Irregular asporogenous rods; OC Actinomycetes and related organisms; Mycobacteriaceae; OC Mycobacterium. XX RN [1] RP 1-1909 RA Fleurbaaij G.A., McNally M., Marich J.E.; RT "The Complete Nucleotide Sequence of Mycobacteria kansassii 23S RT ribosomal DNA."; RL Unpublished. XX RN [2] RP 1-1910 RA Marich J.E.; RT ; RL Submitted (07-OCT-1992) on tape to the EMBL Data Library by: RL Marich J. E., Syngene Inc., 3252 Holiday Court, Suite 101, La RL Jolla, California, USA, 92037 XX CC *source: strain=ATCC 15754; CC *source: clone=pMBI211, pMBI212, pMBI213, pMBI214, pMBI198, pMBI199; XX FH Key Location/Qualifiers FH FT rRNA 1..3137 FT /partial /product= "23S ribosomal RNA" /citation= FT ([1]) XX SQ Sequence 1910 BP; 449 A; 444 C; 654 G; 363 T; 0 other; M.gastri tggatagtggttgcgagcatcaaatggatgcgcttgcccgcaggtagcgtgttcttttgt BASE COUNT 439 a 433 c 634 g 344 t 2909 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- -gcaa-uuuu 61 auucuuuggu uuuugugu|- --------UU GUAAGUGUC- --UAAGGGCG CAUGGUGGAU 121 G|CCUUGG|C AUCGAG|AG| CC-GAUGAAG GA|CGUG(GG AG-GC-)U|- GCG-AUAAGC 181 CUCGGG|-GA GCU(G-UCAA CCG-)AGCGU GG-AUC-CGA GGAUU|UCCG AAUGGG(GAA 241 A)CCC|AGCA CGA-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --guaaug)- UCGUGUU-AC CC-GUAUCU( 481 GA-AUAUA-- UA)GGG-UGC -G-G--GAG- G-GAAC|GC- GGGGAAGU|G A(AACA)UCU 541 CAGUA-CCCG UAGGAGAAGA AAAC(-AAAA --)GUGAU|U CC-GUCAGUA GU(GGCGA)G 601 CGA-ACG-CG GA-aCAUGGC UAAAccgcac -gcaugggug accg-(ggua -)----gggg 661 uugugugugc gggguugugg gaucgauacg -------ucu cagcu(cuac cc)ggcugag 721 g--ggcaguc aga--aagug ucgugguu-a acgGAAgugg c-c(u-ggga u)g-gucugc 781 |c(gua)gaC GG(UGAGAGC )CCGGU-Acg u-gaaaacc- cggcac-cug ccuug----- 841 ---------- ----uaucaa uuccc---GA GUAGCAGCGG G(CCCGUG-G AA)UCUGCUG 901 UGAAUCU-GC C-GG(GACCA C)CC-GGU-A AGCCUAA--- -AUACUCCUC GAUGACCGAU 961 AGCG-GAU-U AGUACC(GUG A)-GGGA-AU GGUGAAAA-G UACCCC(GG- GA-)GGGGA- 1021 -GUGAAA-GA GUACCUGAAA CCGU-GUGCC UACAA-U-CC GUCAGAGCCC --C------- 1081 --------(- ---uuugu-) ---------- -----G-GGG UGAUGGCGUG CCU(UUU-GA 1141 AG|A)AUGA| -GCCUGCGAG UCAGGGACA- UGUCGC-GAG GUUAACCC-( --gagc)-GG 1201 G-GUAGCCGC AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC GU---aucac gc(--guaa- 1261 ----)gcgug -----ug-ua G-UGGCGUGU UCUG-GACCC GAAGC-GGA- GUGA-UCUAC 1321 CCAUGGC|CA GGGUGAAGCG CGGG(CAAG) AC-CGCGUGG AGGCCCGAAC C-CACUUAG( 1381 -GUUGAAGA) CUGAG|GGG- AUGAG-CUGU GGGUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 CCGUGAUAGC UGGUUCUCCC CGAAAUGCAU (-UUAG)GUG CAGC|-GUUG CGUgu---U| 1501 -UCA|CCACG G|AGGUAG|A GCUACUGG-A UGGCCGA-UG |-GGCCC(ca cua)-GGUUA 1561 CUGACGUCAG -CCAAACUCC GAA-UG-|CC G-U-G-G--- ugua---ua| GCG-UGGCAG 1621 UGAGAC--GG C-GGGG(GAU AAG)CUCCGU aCGUC-GAAA GGG(-AAACA G-)CCCAGAU 1681 CGCCGGCUAA G-GC|CCCA- AAGCG-UGUG -C-UAA-GUG ------GGAA AGGAUGUG-C 1741 AGUCGCAGA- GACAACCAGG AGGUUGGC(U UAGAAGCA)G CCAC-CCU|U (GAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CAA GU-GAU-UG- -UGC|GCCGA UAAU-GUAG- 1861 CGGGGCUCAA GCACA-C|C| GCCGAAGCC| GCGA|caacc -------(gc aa-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ----gguug- GG-UAGGGGA G|-----CGU 2221 C-CCU-CA-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-UCAG-C 2341 GAAGCCG-C- C-GG(-GUGA -)CCG--GUG GUGG|AGGAU G-GGGGAGUG AGAAUGC-AG 2401 GC|AUG-AGU A--GCGAUAA GGCAAG(UGA GAAC)CUUGC C|CGCC-GAA AGACCAAGGG 2461 UUCCUG-GGC CAGG-(CCAG U)CC|G-CCC AGGGUGAGU| CGG|G-ACCU AAGGCGAGGC 2521 C(GACA)-G- GCGU-AGUCG AUGG-ACAAC GGG-(UU-GA UAUU)C-CCG U|AC|cc-g- 2581 ug-ugu-ggg c-gcccg-ug augaaucagc gg-uacuaac cacccaaaac cggaucga-u 2641 cacuc-ccc( uuc-g)gggg agugg-aggu cuggggcugc guggagccuu cgcugguagu 2701 agucaagcga u------ggg g--uga-cgc aggaaggca- gccg-ua|cc a-guc(ag-- 2761 -uggua-au- --)-a-cugg g|gcaa---- ---------- ---gcca-gu aggga----- 2821 ---gagc-ga uagg(ca-aa -u-)cc|g-- ucgcucacaa a--------- uccu-gagag 2881 gug-acgc|a ua-|------ -------gcc g(-auug--) aggc------ ------gaau 2941 --ucggu-ga uccu-cug-| cugccaagaa a-agccuc-u a-gcga---- ------gc-a 3001 cacaca--cg g|c|CCGUAC CCCAAACC(G ACACA)GG|~ ~~~~~~~~~~ ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS M.leprae 4759 bp RNA RNA 11-JAN-191 DEFINITION Mycobacterium leprae. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium leprae. ORGANISM Mycobacterium leprae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X56657 ID ML5S23S standard; DNA; PRO; 3922 BP. XX AC X56657; XX DT 24-MAY-1991 (Rel. 28, Last updated, Version 2) DT 24-MAY-1991 (Rel. 28, Created) XX DE M.leprae 5S rRNA and 23S rRNA genes and 16S rRNA gene, partial cds XX KW 16S ribosomal RNA; 23S ribosomal RNA; 5S ribosomal RNA; KW ribosomal RNA. XX OS Mycobacterium leprae OC Prokaryota; Bacteria; Firmicutes; Irregular asporogenous rods; OC Actinomycetes and related organisms; Mycobacteriaceae; OC Mycobacterium. XX RN [2] RP 1-3922 RA Liesack W.C., Sela S., Bercovier H., Pitulle C., Stackebrandt E.; RT "Complete nucleotide sequence of the Mycobacterium leprae 23S and RT 5S rRNA genes plus flanking regions and their potential in RT designing diagnostic oligonucleotide probes"; RL FEBS Lett. 281:114-118(1991). XX RN [3] RP 1-3922 RA Stackebrandt E.; RT ; RL Submitted (22-NOV-1990) on tape to the EMBL Data Library by: RL Stackebrandt E., Depto. Microbiology, University of Queensland, St. RL Lucia, Australia 4067. XX CC *source: strain=borstel; XX CC See Acta Leprologica 7:222-225(1989), FEMS Microbiol. Letters CC 61:285-290 and X53999 for overlapping sequences XX FH Key Location/Qualifiers FH FT rRNA <1..16 FT /product="16S ribosomal RNA" /gene="16S rRNA" FT rRNA 312..3433 FT /gene="23S rRNA" /product="23S ribosomal RNA" FT rRNA 3520..3636 FT /gene="5S rRNA" /product="5S ribosomal RNA" XX SQ Sequence 3922 BP; 956 A; 910 C; 1210 G; 846 T; 0 other; BASE COUNT 770 a 716 c 1005 g 631 t 1637 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------AA GUAAGUGCC- --UAAGGGCG CAUGGUGGAU 121 G|CCUUGG|C AUCGAG|AG| CC-GAUGAAG GA|CGUG(GG AG-GC-)U|- GCG-AUAUGC 181 CUCGGG|-GA GCU(G-UCAA CCG-)AGCGU GG-AUC-CGA GGAUU|UCCG AAUGGG(GAA 241 A)CCC|AACA CGA-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --gucacg)- UCGUGUU-AC CC-GUAUCU( 481 GA-AUAUA-- UA)GGG-UUC -G-G--GAG- G-GAAC|GC- GGGGAAGU|G A(AACA)UCU 541 CAGUA-CCCG UAGGAGAAGA AAAC(-AAUU --)GUGAU|U CC-GCAAGUA GU(GGCGA)G 601 CGA-ACG-UG GA-AUAUGGC UAAAccgcac -acaugucua acua-(ggua -)----gggg 661 uugugugugc gguguugugg gauugguaug ------ucu- caacu(cuac cu)gguugag 721 g----gguag ucagaaagug ccgugguu-a gcgGAAaugg c-c(u-ggga u)g-gccugc 781 |c(gua)gaC GG(UGAGAGC )CCAGU-Acg c-gaaagcc- uggcac-cug ccu------- 841 ---------- --uguaucaa uuccc---GA GUAGCAGCGG G(CCCGUG-G AA)UCUGCUG 901 UGAAUCU-GC C-GG(GACCA C)CC-GGU-A AGCCUAA--- -AUACUUCUC GAUGACCGAU 961 AGCG-GAU-C AGUACC(GUG A)-GGGA-AU GGUGAAAA-G UACCCC(GG- GA-)GGGGA- 1021 -GUGAAA-UA GUACCUGAAA CCGU-GUGCC UACAA-U-CC GUCAGAGCCU --C------- 1081 --------(- ---uuugu-) ---------- -----G-GGG UGAUGGCGUG CUU(UUU-GA 1141 AG|A)AUGA| -GCCUGCGAG UCAGGGACA- UGUCGC-GAG GUUAACCC-( --gugu)-GG 1201 G-GUAGCCGC AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC Gu--aucacg u-(--guga- 1261 ----)-gcgu g----ug-ua G-UGGCGUGU UCUG-GACCC GAAGC-GGA- GUGA-UCUAC 1321 CCAUGGC|CA GGGUGAAGCG CGGG(UAAG) AC-CGCGUGG AGGCCCGAAC C-CACUUAA( 1381 -GUUGAAGA) UUGAG|GGG- AUGAG-UUGU GGGUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 CCGUGAUAGC UGGUUCUCCC CGAAAUGCAU (-UUAG)GUG CAGC|-GUUG CGUGG---u| 1501 -uca|CCACG G|AGGUAG|A GCUACUGG-A UGGCCGA-UG |-GGCCC(ua cu-)aGGUUA 1561 CUGACGUCAG -CCAAACUCC GAA-UG-|CC G-U-G-G--- uuua--aaa| GCG-UGGCAG 1621 UGAGAC--GG C-GGGG(GAU AAG)CUCCGU aCGUC-GAAA GGG(-AAACA G-)CCCAGAU 1681 CGCCGGCUAA G-GC|CCCU- AAGCG-UGUG -C-UAA-GUG ------GAAA AGGAUGUG-C 1741 AGUCGCAAA- GACAACCAGG AGGUUGGC(U UAGAAGCA)G CCAC-CCU|U (GAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CAA GU-GAU-UG- -UGC|GCCGA UAAU-GUAG- 1861 CGGGGCUCAA GCACA-C|C| GCCGAAGCC| GCGG|cacau ucaccu-(uc ua-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)--gg guggaugug- GG-UAGGGGA G|-----CGU 2221 U-CCU-CA-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-UCAG-C 2341 GAAGCCU-C- C-GG(-GUAA -)CCG--GUG GUGG|AGGGU G-GGGAAGUG AGAAUGC-AG 2401 GC|AUG-AGU A--GCGAUAA GGCAAG(UGA GAAC)CUUGC C|CGCC-GUA AGACCAAGGG 2461 UUCCUG-GGC CAGG-(CCAG U)CC|G-CCC AGGGUGAGU| CGG|G-ACCU AAGGCGAGGC 2521 C(GACA)-G- GCGU-AGUCG AUGG-ACAAC GGG-(UU-GA UAUU)C-CCG U|AC|cc-g- 2581 ug-ugu-gug c-gcccg-ug augaaucagc gg-uacucac cacccaaaac cggaucgacc 2641 auauc-ccc( uuc-g)gggg cuauggaggu ucggggcugc gugggaacuu cguugguagu 2701 agucaagcga u------ggg g--uga-cgc aggaaggua- gccgua-|cc a-gu-(ca-- 2761 guggua-au- --)-a-cugg a|gcaa---- ---------- ---gccc-gu aggga----- 2821 ---gagc-ga uagg(ca-aa -u-)cc|g-- ucguucguga a--------- uccu-gagag 2881 gug-augc|a ua-|------ -------gcc g(-auug--) aggc------ ------gaau 2941 --ucggu-aa gccu-cug-| cugccaagaa a-agccuc-u a-gcga---- ------gc-a 3001 uacaug--cg g|c|CCGUAC CCCAAACC(G ACACA)GG|U GG-UCAGGU- A-(GAGCA)U 3061 ACCAAGGCGU ||ACGAGAUA ACUAUGGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGCCUCCGUA AC(-UUCG)G GAGAAGGGGG |GCCGGaaua -ucgugaa-- -------cac 3181 c(-cuugc)g gug------- --ggagcgg- gaucCGG-U| C(GCA)GAGA CCAGUGA-GA 3241 AG|CGACU-- ---GU(UUAC UAAAA)ACAC AGGUCCGUG| CGAAGUC(GU AA------)G 3301 ACGAUGU-AU ACGGACUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGACCUGUUA 3361 ACcc------ (G-AAA)--- gg------GU GA-AGCGGAG AAUUUAAGCC |CCAGUAAAC 3421 |-GGC|GGUG GU(AACUAUA )ACCAUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-CUUCUCA ACUGUCUCAA CCAUAGACUC 3541 G|GCGAAAUU |GCACUAC-G AG(UAAAGAU G)CUCGUUAC GUGCGGC-AG GACGAAAAGA 3601 CCCCG-GG|A CCU-UCACUA C|AACUUGGU AUU|GAUGUU CGGUGCGGUU UGUGUAGGAU 3661 AGGUGGGAGA CUGUGAAA-- CUUCGAC(GC UA)GUUGGGG UGGAGUCGUU -G-UUGAAAU 3721 ACCACU|CUG A-UUGUAUUG AAC-AUCUAA -CCUCGA--- -ACCG(--Ua uAUC)-CGGU 3781 UUAGG-GACA GUGCCUGGCG GG-UAGUUUA ACUG(GGG)C GGUU|GCCUC C(UAA-AAUG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAACCUGG(U CGGUAA)UCA GGUGGC-GA| 3901 GU(G|UAAAU )GCACAAGGG GGCUUGACUG CGAGAC(CUA CAC)GUCAAG CAGGGAC(GA 3961 AA)GU-CGGG |AUUAGUGAU CCGGCACCUC UG(AGUGGA) AGG|GGUGUC GCUCAAC|GG 4021 AUAAAAGGUA CCC|CGGG|G AUAACAG|GC UGA--UCUUC CCCAAGA(G- UCC-AUA)UC 4081 GACGGGA-UG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GAAG 4141 C---A)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGCAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CUCUAU -CC|GCCGCG C-G|CG-UCA 4261 GAAACUU|GA -|GGAAAUC- UGU------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGACGG|ACG AACCUCUGGU AUACCAGU|U GUCUC(AC-C A-)GGGGCA- CCGCUGGAUA 4381 GCC-ACGUUC GGACAAGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAACC UUCUCC|AAG 4441 AUCAGGUUUC U|UA|CCCAC -(-UUG--)- GUGGG--AU- AAGG|-CC|C CCCG-(CAGA 4501 AC-A)CGGGA -UUGAUAG|G UCAG|ACCUA -GAAGCUCA- -(GUAA-)-- UGAGU|GU-A 4561 GGGA|A|CUG GCACUAACU- GGCCGA-AA| GCUUAC-AAA A-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS M.tubercul 4759 bp RNA RNA 17-JUN-1998 DEFINITION Mycobacterium tuberculosis.; . ACCESSION Z73902 AL1234 6 KEYWORDS . SOURCE Mycobacterium tuberculosis. ORGANISM Mycobacterium tuberculosis. REFERENCE 1 (bases 1 to 32514) AUTHORS ,J., Moule,S., Murphy,L., Oliver,S., Osborne,J., Quail,M.A., Rajandream,M.A., Rogers,J., Rutter,S., Seeger,K., Skelton,S., Squares,S., Sqares,R., Sulston,J.E., Taylor,K., Whitehead,S. and Barrell,B.G. Cole,S.T., Brosch,R., Parkhill,J., Garnier,T., Churcher,C., Harris,D., Gordon,S.V., Eiglmeier,K., Gas,S., Barry III,C.E., Tekaia,F., Badcock,K., Basham,D., Brown,D., Chillingworth,T., Connor,R., Davies,R., Devlin,K., Feltwell,T., Gentles,S., Hamlin,N., Holroyd,S., Hornsby,T., Jagels,K., Krogh,A., McLean TITLE complete genome sequence Deciphering the biology of Mycobacterium tuberculosis from the JOURNAL Nature 393 (6685), 537-544 (1998) STANDARD No information REFERENCE 2 (bases 1 to 32514) AUTHORS Parkhill,J. TITLE Direct Submission JOURNAL Submitted (11-JUN-1998) Submitted on behalf of the Mycobacterium tuberculosis sequencing and mapping teams, Sanger Centre, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA Unite de Genetique Moleculaire Bacterienne, Institut Pasteur, 28 rue du Docteur Roux, 75724 Paris Cedex 15, France E-mail: parkhill@sanger. ac.uk STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: Z73902 Notes: Details of M. tuberculosis sequencing at the Sanger Centre are available on the World Wide Web. (URL, http://www.sanger.ac.uk/Projects/M_tuberculosis/) CDS have been renumbered from the original cosmid submissions but the old gene designations are in brackets after the new gene numbers. Gene prediction was based on a Hidden Markov Model of TB genes implemented in TBparse (Krogh) supplemented with visual inspection of positional base preference in codons, especially where there is an increase in the observed/expected third position G + C. CAUTION: In some cases we may not have predicted the correct initiation codon. Where possible we choose an initiation codon (atg, gtg, or ttg) which is preceded by an upstream ribosome binding site sequence (optimally 5-13bp before the initiation codon). If this cannot be identified we choose the most upstream initiation codon. BASE COUNT 759 a 761 c 1033 g 585 t 1621 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------UU GUAAGUGUC- --UAAGGGCG CAUGGUGGAU 121 G|CCUUGG|C AUCGAG|AG| CC-GAUGAAG GA|CGUG(GG AG-GC-)U|- GCG-AUAUGC 181 CUCGGG|-GA GCU(G-UCAA CCG-)AGCGU GG-AUC-CGA GGAUU|UCCG AAUGGG(GAA 241 A)CCC|AGCA CGA-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --gugaug)- UCGUGCU-AC CC-GCAUCU( 481 GA-AUAUA-- UA)GGG-UGC -G-G--GAG- G-GAAC|GC- GGGGAAGU|G A(AACA)UCU 541 CAGUA-CCCG UAGGAGGAGA AAAC(-AAUU --)GUGAU|U CC-GCAAGUA GU(GGCGA)G 601 CGA-ACG-CG GA-ACA-GGC UAAAccgcac -gcaugggua accg-(ggua -)----gggg 661 uugugugugc gggguugugg ga-ggauaug ------ucu- cagcg(cuac cc)ggcugag 721 a----ggcag ucagaaagug ucgugguu-a gcgGAAgugg c-c(u-ggga u)g-gucugc 781 |c(gua)gaC GG(UGAGAGC )CCGGU-Acg c-gaaaacc- cggcac-cug ccuag----- 841 ---------- ----uaucaa uuccc---GA GUAGCAGCGG G(CCCGUG-G AA)UCCGCUG 901 UGAAUCC-GC C-GG(GACCA C)CC-GGU-A AGCCUAA--- -AUACUCCUC GAUGACCGAU 961 AGCG-GAU-U AGUACC(GUG A)-GGGA-AU GGUGAAAA-G UACCCC(GG- GA-)GGGGA- 1021 -GUGAAA-GA GUACCUGAAA CCGU-GUGCC UACAA-U-CC GUCAGAGCCu --c--cuuuu 1081 cc------(- ---ucucc-) -------gga ggaggg-uGG UGAUGGCGUG CCU(UUU-GA 1141 AG|A)AUGA| -GCCUGCGAG UCAGGGACA- UGUCGC-AAG GUUAACCC-( --gugu)-GG 1201 G-GUAGCCGC AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC Ga--cccaca cg(cgcauac 1261 -gcg)cgugu g----aa-ua G-UGGCGUGU UCUG-GACCC GAAGC-GGA- GUGA-UCUAC 1321 CCAUGGC|CA GGGUGAAGCG CGGG(UAAG) AC-CGCGUGG AGGCCCGAAC C-CACUUAG( 1381 -GUUGAAGA) CUGAG|GGG- AUGAG-CUGU GGGUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 CCGUGAUAGC UGGUUCUCCC CGAAAUGCAU (-UUAG)GUG CAGC|-GUUG CGUGG---U| 1501 -UCA|CCGCG G|AGGUAG|A GCUACUGG-A UGGCCGA-UG |-GGCCC(ua cu-)aGGUUA 1561 CUGACGUCAG -CCAAACUCC GAA-UG-|CC G-U-G-G--- ugua---aa| GCG-UGGCAG 1621 UGAGAC--GG C-GGGG(GAU AAG)CUCCGU aCGUC-GAAA GGG(-AAACA G-)CCCAGAU 1681 CGCCGGCUAA G-GC|CCCC- AAGCG-UGUG -C-UAA-GUG ------GGAA AGGAUGUG-C 1741 AGUCGCAAA- GACAACCAGG AGGUUGGC(U UAGAAGCA)G CCAC-CCU|U (GAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CAA GU-GAU-UG- -UGC|GCCGA UAAU-GUAG- 1861 CGGGGCUCAA GCACA-C|C| GCCGAAGCC| GCGG|cacau ccacc--(uu gu-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---g gugggugug- GG-UAGGGGA G|-----CGU 2221 C-CCU-CA-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-UCAG-C 2341 GAAGCCA-C- C-GG(-GUGA -)CCG--GUG GUGG|AGGGU G-GGGGAGUG AGAAUGC-AG 2401 GC|AUG-AGU A--GCGACAA GGCAAG(UGA GAAC)CUUGC C|CGCC-GAA AGACCAAGGG 2461 UUCCUG-GGC CAGG-(CCAG U)CC|G-CCC AGGGUGAGU| CGG|G-ACCU AAGGCGAGGC 2521 C(GACA)-G- GCGU-AGUCG AUGG-ACAAC GGG-(UU-GA UAUU)C-CCG U|AC|cc-g- 2581 ug-ugu-ggg c-gcccg-ug acgaaucagc gg-uacuaac cacccaaaac cggaucga-u 2641 cacuc-ccc( uuc-g)gggg ugugg-aguu cuggggcugc gugggaacuu cgcugguagu 2701 agucaagcga a------ggg g--uga-cgc aggaaggua- gccgua-|cc a-gu-(ca-- 2761 guggua-ac- --)-a-cugg g|gcaa---- ---------- ---gccg-gu aggga----- 2821 ---gagc-ga uagg(ca-aa -u-)cc|g-- ucgcucacua a--------- uccu-gagag 2881 gug-acgc|a ua-|------ -------gcc g(-guug--) aggc------ ------gaau 2941 --ucggu-ga uccu-cug-| cugccaagaa a-agccuc-u a-gcga---- ------gc-a 3001 cacaca--cg g|c|CCGUAC CCCAAACC(G ACACA)GG|U GG-UCAGGU- A-(GAGCA)U 3061 ACCAAGGCGU ||ACGAGAUA ACUAUGGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGCCCCCGUA AC(-UUCG)G GAGAAGGGGG |ACCGGaaua -ucgugaa-- -------cac 3181 c(-cuugc)g gug------- --ggagcgg- gaucCGG-U| C(GCA)GAAA CCAGUGA-GG 3241 AG|CGACU-- ---GU(UUAC UAAAA)ACAC AGGUCCGUG| CGAAGUC(GC AA------)G 3301 ACGAUGU-AU ACGGACUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGACCCGUUA 3361 ACcc------ (G-CAA)--- gg------GU GA-AGCGGAG AAUUUAAGCC |CCAGUAAAC 3421 |-GGC|GGUG GU(AACUAUA )ACCAUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-CUUCUCA ACUGUCUCAA CCAUAGACUC 3541 G|GCGAAAUU |GCACUAC-G AG(UAAAGAU G)CUCGUUAC GCGCGGC-AG GACGAAAAGA 3601 CCCCG-GG|A CCU-UCACUA C|AACUUGGU AUU|GAUGUU CGGUACGGUU UGUGUAGGAU 3661 AGGUGGGAGA CUGUGAAA-- CCUCGAC(GC CA)GUUGGGG CGGAGUCGUU -G-UUGAAAU 3721 ACCACU|CUG A-UCGUAUUG GGC-AUCUAA -CCUCGA--- -ACCC(--UG aAUC)-GGGU 3781 UUAGG-GACA GUGCCUGGCG GG-UAGUUUA ACUG(GGG)C GGUU|GCCUC C(UAA-AAUG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAACCUGG(A CGGCAA)UCA GGUGGC-GA| 3901 GU(G|UAAAU )GCACAAGGG AGCUUGACUG CGAGAC(UUA CAA)GUCAAG CAGGGAC(GA 3961 AA)GU-CGGG |AUUAGUGAU CCGGCACCCC CG(AGUGGA) AGG|GGUGUC GCUCAAC|GG 4021 AUAAAAGGUA CCC|CGGG|G AUAACAG|GC UGA--UCUUC CCCAAGA(G- UCC-AUA)UC 4081 GACGGGA-UG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GGAG 4141 C---A)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGCAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CUCUAU -CC|GCCGCG C-G|CG-UCA 4261 GAAACUU|GA -|GGAAACC- UGU------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGACGG|ACG AACCUCUGGU GCACCAGU|U GUCCC(GC-C A-)GGGGCA- CCGCUGGAUA 4381 GCC-ACGUUC GGUCAGGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAACC UUCUCC|AAG 4441 AUCAGGUUUC U|CA|CCCAC -(-UUG--)- GUGGG--AU- AAGG|-CC|C CCCG-(CAGA 4501 AC-A)CGGGU -UCAAUAG|G UCAG|ACCUG -GAAGCUCA- -(GUAA-)-- UGGGU|GU-A 4561 GGGA|A|CUG GUGCUAACC- GGCCGA-AA| ACUUAC-AAC A-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS M.smegmati 4759 bp RNA RNA 02-DEC-1996 DEFINITION Mycobacterium smegmatis.; 16S ribosomal RNA; 16S rRNA gene; 23S ribosomal RNA; 23S rRNA gene; 5S ribosomal RNA; 5S rRNA gene; internal transcribed spacer 1; internal transcribed spacer 2; ITS1; ITS2; tyrosyl-tRNA synthetase. ACCESSION Y08453 KEYWORDS 16S ribosomal RNA; 16S rRNA gene; 23S ribosomal RNA; 23S rRNA gene; 5S ribosomal RNA; 5S rRNA gene; internal transcribed spacer 1; internal transcribed spacer 2; ITS1; ITS2; tyrosyl-tRNA synthetase. SOURCE Mycobacterium smegmatis. ORGANISM Mycobacterium smegmatis. REFERENCE 1 (bases 1 to 6327) AUTHORS Sander,P., Prammananan,T. and Boettger,E.C. TITLE Introducing mutations into a chromosomal rRNA gene using a genetically modified eubacterial host with a single rRNA operon JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 6327) AUTHORS Sander,P. TITLE Direct Submission JOURNAL Submitted (30-SEP-1996) P. Sander, Institut fuer Medizinische Mikrobiologie, Medizinische Hochschule Hannover, Konstanty-Gutschowstr. 8, D-30623, Hannover, FRG STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: Y08453 Related sequences: M59263-M59285; X76255-X76258; U09821, U09862, U09863. BASE COUNT 755 a 720 c 1029 g 619 t 1636 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- ------gu|- --------AA GUAAGUGUU- --UAAGGGCG CAUGGUGGAU 121 G|CCUUGG|C ACUGGG|AG| CC-GAUGAAG GA|CGUA(GG AG-GC-)U|- GCG-AUAAGC 181 CUCGGG|-GA GCU(G-UCAA CCG-)AGCGU UG-AUC-CGA GGAUG|UCCG AAUGGG(GAA 241 A)CCC|GGCA CGA-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --gugaug)- UCGUGUC-AC CA-GGCGCU( 481 GA-AUAUA-- UA)GGC-GUC -U-G--GGG- G-GAAC|GC- GGCGAAGU|G A(AACA)UCU 541 CAGU--CCCG UAGGAAGAGA AAAC(-AAAU --)GUGAU|U CCCGUGAGUA GU(GGCGA)G 601 CGA-ACA-CG GA-GGAUGGC UAAA-cguau gacaugugau accg-(ggua -)----gggg 661 uugugugugc gggguugugg gaccuaucu- ------uuc- cgccu(cuac cu)ggcugga 721 g----ggcag ugagaaaaug uugugguu-a gcgGAAaugg c-u(u-ggga u)g-gccucc 781 |c(gua)gaC GG(UGAGAGC )CCGGU-Acg u-gaaaacc- cgacgu-cug ucu------- 841 ---------- --ugauggug uuccc---GA GUAGCAGCGG G(CCCGUG-G AA)UCUGCUG 901 UGAAUCU-GC C-GG(GACCA C)CC-GGU-A AGCCUGA--- -AUACUUCCC AGUGACCGAU 961 AGCG-GAU-U AGUACC(GUG A)-GGGA-AU GGUGAAAA-G UACCCC(GG- GA-)GGGGA- 1021 -GUGAAA-GA GUACCUGAAA CCGU-GCGCU UACAA-U-CC GUCAGAGCCC --U------- 1081 --------(c gacgugugu) ---------- -----G-GGG UGAUGGCGUG CCU(UUU-GA 1141 AG|A)AUGA| -GCCUGCGAG UCAGGGACA- UGUCGC-GAG GUUAACCC-( --gggu)-GG 1201 G-GUAGCCGC AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC GU--auccac ac--aagagu 1261 ----)gugug g----UG-UA G-UGGUGUGU UCUG-GACCC GAAGC-GGA- GUGA-UCUAC 1321 CCAUGGC|CA GGGUGAAGCG CGGG(UAAG) AC-CGCGUGG AGGCCCGAAC C-CACUUAG( 1381 -GUUGAAGA) CUGAG|GGG- AUGAG-CUGU GGGUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 CCGUGAUAGC UGGUUCUCCC CGAAAUGCAU (-UUAG)GUG CAGC|-GUCG CAUGU---u| 1501 -ucu|UGCCG G|AGGUAG|A GCUACUGG-A UGGCCGA-UG |-GGCCC(ac a--)GGGUUA 1561 CUGACGUCAG -CCAAACUCC GAA-UG-|CC G-G-U-A--- aggccaaga| gUG-CGGAAG 1621 UGAGAC--GG C-GGGG(GAU AAG)UUCCGU GCGUC-GAGA GGG(-AAACA G-)CCCAGAU 1681 CGCCGGUUAA G-GC|CCCU- AAGCG-UUUG -U-UAA-GUG ------GAAA AGGAUGUG-A 1741 AGUCGCAGAA GAAAACCAGG AGGUUGGU(U UAGAAGCA)G CCAC-CCU|G (GAA)A|GAG 1801 UGC(GUAUUA )GU|UCACUG GU-----CAA GU-GAU-UG- -UGC|GCCGA UAUU-GUGG- 1861 CGGGGUUCAA GCACA-C|C| GCCGAAGCC| GCGG|-aagc caa----(cg u--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -uug-uuug- GG-UAGGGGA G|-----CGU 2221 C-CUG--A-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-CCGG-U 2341 GAAGCCG-C- C-GA(-GUA- -)UCG-AGUG GUGG|AGGGU G-UGGGAGUG AGAAUGC-AG 2401 GC|AUG-AGU A--GCGAUUA GGCAAG(UGA GAAC)CUUCC C|CGCC-GAA AGACCAAGGG 2461 UUCCUG-GGC CAGG-(CCAG U)CC|G-CCC AGGGUGAGU| CGG|G-ACCU AAGGCGAGGC 2521 C(GACA)-G- GCGU-AGUCG AUGG-ACAAC GGG-(UU-GA UAUU)C-CCG U|AC|cc-g- 2581 ug-uau-gug c-gucca-ug augaaucagc gg-uacuaac cauccaaaac caaccguga- 2641 ccgca-ccu( uuc-g)gggu guggcguugg -uggggcugc augggaccuu cguugguagu 2701 agucaagcga u------ggg g--uga-cgc aggaaggua- gccgua-|cc g-gu-(ca-- 2761 guggua-au- --)-a-ccgg c|guaa---- ---------- ---gccu-gu aggga----- 2821 ---guca-ga uagg(ua-aa -u-)cc|g-- ucuggcauau a--------- uccu-gagag 2881 gug-augc|a ua-|------ -------gcc g(-agug--) aggc------ ------gaau 2941 --ucggu-ga uccu-aug-| cugccgagaa a-agccuc-u a-gcga---- ------gg-a 3001 cauaca--cg g|C|CCGUAC CCCAAACC(A ACACA)GG|U GG-UCAGGU- A-(GAGAA)U 3061 ACUAAGGCGU ||ACGAGUGA ACUAUGGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGCCCCCGUA AC(-UUCG)G GAGAAGGGGG |ACCCacaug -gcgugua-- -------agc 3181 c(-uuuac)g gcc------- --caagcgu- gaguGGG-U| G(GCA)CAAA CCAGUGA-GA 3241 AG|CGACU-- ---GU(UUAC UAAAA)ACAC AGGUCCGUG| CGAAGUC(GC AA------)G 3301 ACGAUGU-AU ACGGACUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGACCCGUUA 3361 ACccc----- (C-UUG)--g gg------GU GA-AGCGGAG AAUUUAAGCC |CCAGUAAAC 3421 |-GGC|GGUG GU(AACUAUA )ACCAUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AA-U)UCCGA C|CUGCACGA AUGGCGUAAC GA-CUUCUCA ACUGUCUCAA C-AUAGACUC 3541 G|GCGAAAUU |GCACUAC-G AG(UAAAGAU G)CUCGUUAC GCGCGGC-AG GACGAAAAGA 3601 CCCCG-GG|A CCU-UCACUA C|AACUUGGU AUU|GGUGCU CGAUACGGUU UGUGUAGGAU 3661 AGGUGGGAGA CUGUGAAG-- CUCACAC(GC CA)GUGUGGG UGGAGUCGUU -G-UUGAAAU 3721 ACCACU|CUG A-UCGUAUUG GGC-CUCUAA -CCUCGG--- -ACCG(--Ua uAUC)-CGGU 3781 UCAGG-GACA GUGCCUGGUG GG-UAGUUUA ACUG(GGG)C GGUU|GCCUC C(UAA-AAUG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAACCUGG(A CGGCAA)UCA GGUGUU-GA| 3901 GU(G|UAAGU )GCACAAGGG AGCUUGACUG CGAGAC(GGA CAU)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |ACUAGUGAU CCGGCACCUC UG(AGUGGA) AGG|GGUGUC GCUCAAC|GG 4021 AUAAAAGGUA CCC|CGGG|G AUAACAG|GC UGA--UCUUC CCCAAGA(G- UCC-AUA)UC 4081 GACGGGA-UG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GGAG 4141 C---A)-GGU CCCAAGGGU| UGGGC(UGUU C)GCCCCAUU AAAGCGGCAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CUCUAU -CC|GCCGCG C-G|CG-UCA 4261 GAAGCUU|GA -|GGAAACC- UGU------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGACGG|ACG AACCUCUGGU AUACCAGU|U GUCCC(AC-C A-)GGGGCA- CGGCUGGAUA 4381 GCC-ACGUUC GGACAGGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAACC UCUUCC|AAG 4441 ACCAGGCUUC U|CA|CCCUC -(-UAG--)- GAGGG--AU- AAGG|-CC|C CCCG-(CAGA 4501 CC-A)CGGGA -UUGAUAG|A CCAG|ACCUG -GAAGCCUA- -(GUAA-)-- UAGGU|GC-A 4561 GGGA|A|CUG GCACUAACC- GGCCGA-AA| ACUUAC-AAC A-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS M.phlei 4759 bp RNA RNA 11-JAN-191 DEFINITION Mycobacterium phlei. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium phlei. ORGANISM Mycobacterium phlei. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X74493 ID MP23SRNA standard; DNA; PRO; 3494 BP. XX AC X74493; XX DT 04-AUG-1994 (Rel. 40, Created) DT 04-AUG-1994 (Rel. 40, Last updated, Version 2) XX DE M.phlei 23S ribosomal RNA gene XX KW 23S ribosomal RNA. XX OS Mycobacterium phlei OC Prokaryota; Bacteria; Firmicutes; Irregular asporogenous rods; OC Actinomycetes and related organisms; Mycobacteriaceae; OC Mycobacterium. XX RN [1] RP 1-3494 RA Van der Giessen J.W.B.; RT ; RL Submitted (09-AUG-1993) to the EMBL/GenBank/DDBJ databases. RL J.W.B. Van Der Giessen, Inst of Infectious Diseases & Immunology, RL Dept of Bacteriology, School of Veterinary Medicine, Yalelaan 1, PO RL Box 80.165, 3508 TD Utrecht, NETHERLANDS XX RN [2] RP 1-3494 RA Van der Giessen J.W.B., Haring R., Van der Zeijst B.A.M.; RT "Comparison of the 23S ribosomal RNA genes and the spacer region RT between the 16S and 23S rRNA genes of the closely related RT Mycobacterium avium and Mycobacterium paratuberculosis and the RT fast-growing Mycobacterium phlei"; RL Microbiology 140:1103-1108(1994). XX FH Key Location/Qualifiers FH FT source 1..3494 FT /organism="Mycobacterium phlei" FT /strain="R82" FT /clone="MPhP1,MPhP2,MPhP3,MPhI" FT rRNA 1..20 FT /product="16S rRNA" FT misc_RNA 21..379 FT /note="spacer region" FT rRNA 380..3494 FT /product="23S rRNA" XX SQ Sequence 3494 BP; 783 A; 811 C; 1170 G; 729 T; 1 other; BASE COUNT 728 a 731 c 1040 g 615 t 1645 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- -uguuugu|- --------GU GUAAGUGUU- --UAAGGGCG CAUGGUGGAU 121 G|CCUUGG|C ACUGGG|AG| CC-GAUGAAG GA|CGUG(GG AG-GC-)U|- GCG-AUAUGC 181 CUCGGG|-GA GCU(G-UCAA CCG-)AGCGU GG-AUC-CGA GGAUU|UCCG AAUGGG(GGA 241 A)CCC|GGCA CGA-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --gugaug)- UCGUGUC-AC CC-AACGCU( 481 GA-AUAUA-- UA)GGC-GUU -G-G--GGG- G-GAAC|GC- GGGGAAGU|G A(AACA)UCU 541 CAGUA-CCCG UAGAAGAAGA AAAC(-AAUU --)GUGAU|U CC-GUGAGUA GU(GGCGA)G 601 CGA-AAg--G GA-GGAUGGC UAAAccgcgu -gcaugugau accc-(gguc -)----gggg 661 uugugugugc gguguugugg ggccugugu- ----gucca- ucguc(-cgc c-)ggcgaug 721 gca---guag ugauaaagca gugugguu-a gguGAAgugg c-c(u-ggga u)g-gucugc 781 |c(gua)guG GG(UGAGAGC )CC-GU-Aac c-gaaaaca- ugcugc-cgc ug-------- 841 ---------- ---ucacagg u-ccc---GA GUAGCAGCGG G(CCCGUG-G AA)UCUGCUG 901 UGAAUCU-GC C-GG(GACCA C)CC-GGU-A AGCCUGA--- -AUACUUCCC AGUGACCGAU 961 AGCG-GAU-U AGUACC(GUG A)-GGGA-AU CGUGAAAA-G UACCCC(GG- GA-)-GGGA- 1021 -GUGAAA-GA GUACCUGAAA CCGU-GUGCC UACAA-U-CC GUCAAAGCCC --u--cu--- 1081 --------(- ---cuugu-) ---------- --aguG-GGG UGAUGGCGUG CCU(UUU-GA 1141 AG|A)AUGA| -GCCUGCGAG UCAGGGACA- UGUCGC-GAG GUUAACCC-( --guga)-GG 1201 G-GUAGCCGC AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC GU--auccaa cc(-uguugg 1261 ----)gguug g----UG-UA G-UGGUGUGU UCUG-GACCC GAAGC-GGG- GUGA-UCUAC 1321 CCAUGGC|CA GGGUGAAGCG CGCG(UAAG) AC-CGCGUGG AGGCCCGAAC C-CACUUAG( 1381 -GUUGAAGA) CUGAG|GGG- AUGAG-CUGU GGGUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 CCAUGAUAGC UGGUUCUCCC CGAAAUGCAU (-UUAG)GUG CAGC|-GUCG CAUGU---u| 1501 -ucu|UAUCG G|AGGUAG|A GCUACUGG-A UGGCCGA-UG |-GGCCC(uc ac-)aGGUUA 1561 CUGACGUCAG -CCAAACUCC GAA-UG-|CC G-A-U-A--- agug--aaa| gug-UGGCAG 1621 UGAGAC--GG C-GGGG(GAU AAG)CUCCGU gCGUC-GAGA GGG(-AAACA G-)CCCAGAU 1681 CGCCGGCUAA G-GC|CCCU- AAGCG-UGUG -C-UAA-GUG ------GAAA AGGAUGUG-C 1741 AGUCGCGAA- GACAACCAGG AGGUUGGC(U UAGAAGCA)G CCAU-CCU|U (GAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CAA GU-GAU-UG- -UGC|GCUGA UAAU-GUAG- 1861 CGGGGCUCAA GCACA-C|C| GCCGAAGCC| GCGG|ca-au cagcc--(uu ugu------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---g gcuggugug- GG-UAGGGGA G|-----CGU 2221 C-CUG-CA-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-CCGG-U 2341 GAAGCCG-C- C-GA(-GUGA -)UCG--GUG GUGG|AGGGU G-UGGGAGUG AGAAUGC-AG 2401 GC|AUG-AGU A--GCGAUAA GGCAAG(UGA GAAC)CUUUC C|CGCC-GGA AGACCAAGGG 2461 UUCCUG-GGC CAGG-(CCAG U)CC|G-CCC AGGGUGAGU| CGG|G-ACCU AAGGCGAGGC 2521 C(GACA)-G- G-GU-AGUCG AUGG-ACAAC GGG-(UU-GA UAUU)C-CCG U|AC|cc-g- 2581 ug-uau-gag c-guccc-ug augaaucuca uucugcuaac cacccaaaac cuggccga-- 2641 --uca-ucc( uuc-g)gggg -ugacg-guu ggg-ggcugc gugggacccg gu-ggguagu 2701 agucaagcga u------ggg g--uga-cgc aggaaggua- gccgua-|cc n-gu-(ca-- 2761 guggua-au- --)-a-ccgg g|guaa---- ---------- ---accu-gu agggc----- 2821 ---gagu-ga uagg(ca-aa -u-)cc|g-- ucacucauau ---------- gccu-gagag 2881 gug-augc|a ua-|------ -------gcc g(-agug--) aggc------ ------gaau 2941 --ucggu-ga uccu-aug-| cugucgagaa a-agccuc-u a-gcaa---- ------gc-g 3001 cauaca--cg g|C|CCGUAC CCCAAACC(A ACACA)GG|U GG-UCAGGU- A-(GAGAA)U 3061 ACCGAGGCGU ||ACGAGUGA ACUAUGGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGCCCCCGUA AC(-UUCG)G GAGAAGGGGG |acccacgua -ccgugag-- -------ggc 3181 u(-cuugc)g gcg------- --gcagcgg- ggguggg-U| G(GCA)CAAA CCAGUGA-GG 3241 AG|CGACU-- ---GU(UUAC UAAAA)ACAC AGGUCCGUG| CGAAGUC(GC AA------)G 3301 ACGAUGU-AU ACGGACUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGACCCGUUA 3361 ACccu----- (U-UCG)--g gg------GU GA-AGCGGAG AAUUUAAGCC |CCAGUAAAC 3421 |-GGC|GGUG GU(AACUAUA )ACCAUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-CUUCUCA ACUGUCUCAA CCAUAGACUC 3541 G|GCGAAAUU |GCAUUAC-G UG(UAAAGAU G)CUCGUUAC GCGCGGC-AG GACGAAAAGA 3601 CCCCG-GG|A CCU-UCACUA C|AGCUUGGU AUU|GGUGCU CGAUACGGUU UGUGUAGGAU 3661 AGGUGGGAGA CUGUGAAG-- CUCGGAC(GC CA)GUUCGGG UGGAGUCGUU -G-UUGAAAU 3721 ACCACU|CUG A-UCGUAUUG GGC-CUCUAA -CCUCGG--- -ACCG(--UG gAUC)-CGGU 3781 UCAGG-GACA GUGCCUGGUG GG-UAGUUUA ACUG(GGG)C GGUU|GCCUC C(UAA-AAAG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAACCUGG(A CGGCAA)UCA GGUGUU-GA| 3901 GU(G|UAAGU )GCACAAGGG AGCUUGACUG CGAGAC(GGA CAU)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |ACUAGUGAU CCGGCACCCC CG(AGUGGA) AGG|GGUGUC GCUCAAC|GG 4021 AUAAAAGGUA CCC|CGGG|G AUAACAG|GC UGA--UCUUC CCCAAGA(G- UCC-AUA)UC 4081 GACGGGA-UG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GGAG 4141 C---A)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGCAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CUCUAU -CC|GCCGCG C-G|CG-UCA 4261 GAAGCUU|GA -|GGAAACC- UGU------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGACGG|ACG AACCUCUGGU AUACCAGU|U GUCCC(AC-C A-)GGGGCA- CCGCUGGAUA 4381 GCC-ACGUUC GGACAGGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAACC UCUUCC|AAG 4441 ACCAGGCUUC U|CA|CCCU- -(CUAGG-)- -AGGG--AU- AAGG|-CC|C CCCG-(CAGA 4501 CC-A)CGGGA -UCGAUAG|A CCAG|ACCUG -CACGCACA- -(GCAA-)-- UGUGU|UC-A 4561 GGGA|A|CUG GCACUAACU- GGCCGA-AA| GC~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS M.paratube 4759 bp RNA RNA 11-JAN-191 DEFINITION Mycobacterium paratuberculosis. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium paratuberculosis. ORGANISM Mycobacterium paratuberculosis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X74495 ID MPARRNA standard; DNA; PRO; 3401 BP. XX AC X74495; XX DT 04-AUG-1994 (Rel. 40, Created) DT 04-AUG-1994 (Rel. 40, Last updated, Version 4) XX DE M.paratuberculosis 23S ribosomal RNA gene XX KW 23S ribosomal RNA. XX OS Mycobacterium paratuberculosis OC Prokaryota; Bacteria; Firmicutes; Irregular asporogenous rods; OC Actinomycetes and related organisms; Mycobacteriaceae; OC Mycobacterium. XX RN [1] RP 1-3401 RA Van der Giessen J.W.B.; RT ; RL Submitted (09-AUG-1993) to the EMBL/GenBank/DDBJ databases. RL J.W.B. Van Der Giessen, Inst of Infectious Diseases & Immunology, RL Dept of Bacteriology, School of Veterinary Medicine, Yalelaan 1, PO RL Box 80.165, 3508 TD Utrecht, NETHERLANDS XX RN [2] RP 1-3401 RA Van der Giessen J.W.B., Haring R., Van der Zeijst B.A.M.; RT "Comparison of the 23S ribosomal RNA genes and the spacer region RT between the 16S and 23S rRNA genes of the closely related RT Mycobacterium avium and Mycobacterium paratuberculosis and the RT fast-growing Mycobacterium phlei"; RL Microbiology 140:1103-1108(1994). XX FH Key Location/Qualifiers FH FT source 1..3401 FT /organism="Mycobacterium paratuberculosis" FT /strain="J2A" FT /clone="MPP1, MPP2, MPP3, MPI" FT rRNA 1..20 FT /product="16S rRNA" FT misc_RNA 21..294 FT /note="spacer region" FT rRNA 295..3401 FT /product="23S rRNA" XX SQ Sequence 3401 BP; 812 A; 810 C; 1098 G; 681 T; 0 other; BASE COUNT 757 a 741 c 1004 g 605 t 1652 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- -ugugugu|- --------AA GUAAGUGUU- --UAAGGGCG CAUGGUGGAU 121 G|CCUUGG|C AUCGAG|AG| CC-GAUGAAG GA|CGUG(GG AG-GC-)U|- GCG-AUAUGC 181 CUCGGG|-GA GCU(G-UCAA CCG-)AGCAU UG-AUC-CGA GGAUU|UCCG AAUGGG(GGA 241 A)CCC|AGCA CGA-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --gugaug)- UCGUGUU-AC CC-GUAUCU( 481 GA-AUAUA-- UA)GGG-UGC -G-G--GAG- G-UAAC|GC- GGGGAAGU|G A(AACA)UCU 541 CAGUA-CCCG UAGGAGAAGA AAAC(-AAUU --)GUGAU|U CC-GUCAGUA GU(GGCGA)G 601 CGA-AC--CG GA-ACA-GGC UAAAccgcau -gcauggaca accg-(ggua -)----gggg 661 uugugugugc gggguugugg gauugauaug ------ucu- cagcu(cuac cu)ggcugag 721 g----gguag ucagaaagug ucgugguu-a gcgGAAgugg c-c(u-ggga c)g-gcccgc 781 |c(gua)gaC GG(UGAGAGC )CCGGU-Acg c-gaaaacc- cggcac-cug ccu------- 841 ---------- --uauaucaa caccc---GA GUAGCAGCGG G(CCCGUG-G AA)UCUGCUG 901 UGAAUCU-GC C-GG(GACCA C)CC-GGU-A AGCCUAA--- -AUACUUCUC GAUGACCGAU 961 AGCG-GAU-U AGUACC(GUG A)-GGGA-AU GGUGAAAA-G UACCCC(GG- GA-)-GGGA- 1021 -GUGAAA-UA GUACCUGAAA CCGU-GUGCC UACAA-U-CC GUCAGAGCCU --c------- 1081 --------(- ---cucgu-) ---------- -----G-GGG UGAUGGCGUG CCU(UUU-GA 1141 AG|A)AUGA| -GCCUGCGAG UCAGGGACA- CGUCGC-GAG GUUAACCC-( --gugc)-GG 1201 G-GUAGCCGC AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC GC--aucccu --(---uuu- 1261 ----)--ggg g----UG-UA G-UGGCGUGU UCUG-GACCC GAAGC-GGA- GUGA-UCUAC 1321 CCAUGGC|CA GGGUGAAGCG CGGG(UAAG) AC-CGCGUGG AGGCCCGAAC C-CACUUAG( 1381 -GUUGAAGA) CUGAG|GGG- AUGAG-CUGU GGGUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 CCGUGAUAGC UGGUUCUCCC CGAAAUGCAU (-UUAG)GUG CAGC|-GUUG CGUGG---u| 1501 -uca|CCACG G|AGGUAG|A GCUACUGG-A UGGCCGA-UG |-GGCCC(ua cu-)aGGUUA 1561 CUGACGUCAG -CCAAACUCC GAA-UG-|CC G-U-G-G--- ugua--aaa| gcg-UGGCAG 1621 UGAGAC--GG C-GGGG(GAU AAG)CUCCGU aCGUC-GAAA GGG(-AAACA G-)CCCAGAU 1681 CGCCGGCUAA G-GC|CCCU- AAGCG-UGUG -C-UAA-GUG ------GAAA AGGAUGUG-U 1741 AGUCGCAGA- GACAACCAGG AGGUUGGC(U UAGAAGCA)G CCAU-CCU|U (GAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CAA GU-GAU-UA- -UGC|GCCGA UAAU-GUAG- 1861 CGGGGCUCAA GCACA-C|C| GCCGAAGCC| GCGG|cacau ucauc--(uu uac------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---g guggaugug- GG-UAGGGGA G|-----CGU 2221 C-CCC-CA-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-UCAG-- 2341 CGAAGCU-C- C-GG(-GUGA -)UCG--GUG GUGG|AGGGU G-GGGGAGUG AGAAUGC-AG 2401 GC|AUG-AGU A--GCGAUAA GGCAAG(UGA GAAC)CUUGC C|CGCC-GUA AGACCAAGGG 2461 UUCCUG-GGC CAGG-(CCAG U)CC|G-CCC AGGGUGAGU| CGG|G-ACCU AAGGCGAGGC 2521 C(GACA)-G- G-GU-AGUCG AUGG-ACAAC GGG-(UU-GA UAUU)C-CCG U|AC|cc-g- 2581 ug-uau-ggg c-guccc-ug augaaucagc gg-uacuaac cacccaaaac cggaucgacc 2641 au-uc-ccc( uuc-g)gggg c-guggcgau ucggggcugc gugggaccuu cgcugguagu 2701 agucaagcaa u------ggg g--uga-cgc aggaaggca- gccgua-|cc a-gu-(ca-- 2761 guggua-au- --)-a-cugg g|gcaa---- ---------- ---gccc-gu -a-ga----- 2821 ---gagc-ga uagg(ca-aa -u-)cc|g-- uccgucacua a--------- uccu-gagag 2881 gug-augc|a ua-|------ -------gcc g(-guug--) aggc------ ------gaau 2941 --ucggu-ga uccu-cug-| cugccaagaa a-agccuc-u a-gcga---- ------gc-a 3001 cauaca--cu g|C|CCGUAC CCCAAACC(A ACACA)GG|U GG-UCAGGU- A-(GAGAA)U 3061 ACCAAGGCGU ||ACGAGAUA ACUAUGGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGCCCCCGUA AC(-UUCG)G GAGAAGGGGG |cccggaaua -ccgugaa-- -------cac 3181 c(-cuugc)g gug------- --ggagcgg- gauucgg-C| C(GCA)GAAA CCAGUGG-GU 3241 AG|CGACU-- ---GU(UUAC UAAAA)ACAC AGGUCCGUG| CGAAGUC(GC AA------)G 3301 ACGAUGU-AU ACGGACUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGACCCGUUA 3361 ACcc------ (G-UAA)--- gg------GU GA-AGCGGAG AAUUUAAGCC |CCAGUAAAC 3421 |-GGC|GGUG GU(AACUAUA )ACCAUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-CUUCCCA ACUGUCUCAA CCAUAGACUC 3541 G|GCGAAAUU |GCACUAC-G AG(UAAAGAU G)CUCGUUAC GCGCGGC-AG GACGAAAAGA 3601 CCCCG-GG|A CCU-UCACUA C|AACUUGGU AUU|GGUGUU CGGUACGGUU UGUGUAGGAU 3661 AGGUGGGAGA CUUUGAAG-- CACAGAC(GC CA)GUUUGUG UGGAGUCGUU -G-UUGAAAU 3721 ACCACU|CUG A-UCGUAUUG GAC-ACCUAA -CGUCGA--- -ACCC(--Uu -AUC)-GGGU 3781 UCACG-GACA GUGCCUGGCG GG-UAGUUUA ACUG(GGG)C GGUU|GCCUC C(UAA-AAUG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAACCUGG(A CGGCAA)UCA GGUGGC-GA| 3901 GU(G|UAAGU )GCACAAGGG AGCUUGACUG CGAGAC(UUA CAA)GUCAAG CAGGGAC(GA 3961 AA)GU-CGGG |ACUAGUGAU CCGGCACCCC CG(AGUGGA) AGG|GGUGUC ACUCAAC|GG 4021 AUAAAAGGUA CCC|CGGG|G AUAACAG|GC UGA--UCUUC CCCAAGA(G- UCC-AUA)UC 4081 GACGGGA-UG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GGAG 4141 C---A)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGCAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CUCUAU -CC|GCCGCG C-G|CG-UCA 4261 GAAACUU|GA -|GGAAACC- UGU------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGACGG|ACG AACCUCUGGU AUACCAGU|U GUCCC(AC-C A-)GGGGCA- CGGCUGGAUA 4381 GCC-ACGUUC GGACAGGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAACC UUCUCC|AAG 4441 AUCAGGUUUC U|CA|CCCU- -(UUUAG-)- -AGGG--AU- AAGG|-CC|C CCCG-(CAGA 4501 UC-A)CGGGA -UUGAUAG|G CCAG|ACCUG -GAAGCUCA- -(AUAA-)-- UGAGU|GC-A 4561 GGGA|A|CUG GCACUAACU- GGCCGA-AA| GC~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS R.erythrop 4759 bp RNA RNA 03-JUN-1997 DEFINITION Rhodococcus erythropolis.; . ACCESSION AF0012 5 KEYWORDS . SOURCE Rhodococcus erythropolis. ORGANISM Rhodococcus erythropolis. REFERENCE 1 AF001265 (bases 1 to 6324) AUTHORS Setterquist,R.A., Montgomery,J.P., Gutell,R.R. and Fox,G.E. TITLE Nucleotide Sequence Analysis of a Ribosomal RNA Gene Cluster from Rhodococcus sp. IGTS8 JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 6324) AUTHORS Setterquist,R.A. and Fox,G.E. TITLE Direct Submission JOURNAL Submitted (24-APR-1997) Biochemical and Biophysical Sc., University of Houston, 4800 Calhoun, Houston, TX 77204-5934, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: AF001265 BASE COUNT 767 a 707 c 1020 g 631 t 1634 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------UU GUAAGUAAU- --GAAGAGCG UACGGUGGAU 121 G|CCUUGG|C ACCAGG|AG| CC-GAUGAAG GA|CGUA(GG AG-GC-)U|- GCG-AUAAGC 181 CUCGGG|-GA GCU(G-UCAA CCG-)AGCUG UG-AUC-CGA GGAUG|UCCG AAUGGG(GAA 241 A)CCC|AGCA CGA-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --gugaug)- UCGUGUU-AC CC-GCGCCU( 481 GA-AUAUA-- UA)GGG-CGU -GUG--GAG- G-GAAC|GU- GGGGAAGU|G A(AACA)UCU 541 CAGUA-CCCA CAGGAAGAGA AAAC(-AACC --)GUGAU|U CC-GUGAGUA GU(GGCGA)G 601 CGA-AAG-CG GA-AGA-GGC UAAAccaugg -gugugugau agcc-(ggca -)----ggug 661 uugcauucgu gggguugugg gguucauuuu ------guc- gauac(-ugc c-)guguugg 721 c---caacag uaagaaauca cag-gguu-a gugGAAgugg u-c(u-ggaa c)g-gccugu 781 |c(gua)gaG GG(UGAGAAU )CCCGU-Aca c-gaaaacuu u-guga-cug uu-------- 841 ---------- -guaauggaa a-ccc---AA GUAGCACCGG G(CCCGUG-A AA)UCUGGUG 901 UGAAUCU-GU C-GG(GACCA C)CC-GAU-A AGCCUGA--- -AUACUCCCU GGUGACCGAU 961 AGCG-GAC-U AGUACC(GUG A)-GGGA-AA GGUGAAAA-G UNNNCC(GN- NN-)NNGGA- 1021 -GUGAAA-UA GUACCUGAAA CCGU-GCGCU UACAA-U-CC GUCAGAGCCU --uc-gagca 1081 g-------(- ---uuua--) --------cu gcu-gG-GGG UGAUGGCGUG CCU(UUU-GA 1141 AG|A)AUGA| -GCCUGCGAG UUAGUGGCA- UAUCGC-GAG GUUAACCC-( --gugu)-GG 1201 G-GUAGCCGU AGC(GAAA-) GCGAGUCC(G AA-UA)GGGC GA-------- ---------- 1261 ---------- ----ucg-ua G-UGGCAUGC UCUA-GACCC GAAGC-GGA- GUGA-UCUAC 1321 CCAUGGC|CA GGUUGAAGCG ACGG(UAAG) AC-GUCGUGG AGGACCGAAC C-CACUUAG( 1381 -GUUGAAAA) CUGAG|GGG- AUGAG-UUGU GGGUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 CCGUGAUAGC UGGUUCUCCC CGAAAUGCAU (-UUAG)GUG CAGC|-GUCG CGUGU---U| 1501 -UCU|CACCG G|AGGUAG|A GCUACUGG-A UGGUCUA-GG |-GGGCC(ca ca-)AGCUUA 1561 CCGAAAUCAG -CCAAACUCC GAA-UG-|CC G-G-U-G--- agug--aga| GCG-CGGCAG 1621 UGAGAC--UG C-GGGC(GAU AAG)GUUCGU -AGUC-GAGA GGG(-AAACA G-)CCCAGAU 1681 CGCCAGCUAA G-GU|CCCU- AAGCG-UGUA -C-UAA-GUG ------GAAA AGGAUGUG-G 1741 GGUCGCGAA- GACAACCAGG AGGUUGGC(U UAGAAGCA)G CCAC-CCU|U (GAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CAA GU-GAU-CC- -UGC|GCCGA CAAU-GUAG- 1861 CGGGGCUCAA GUACA-C|C| ACCGAAGCU| GCGG|cauuc acgca--(au agccccagu- 1921 ugauc(cacg )gauu-ucug gcagg----- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---u guguggaug- GG-UAGGGGA G|-----CGU 2221 C-GUG-UG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCAU-G 2341 GAAGCGG-C- A-GG(-GUGA -)CCU-AGCC GUGG|AGGCC A-CACGAGUG AGAAUGC-AG 2401 GC|AUG-AGU A--GCGAA-A GACGAG(UGA GAAA)CUCGU C|CGCC-GAA UGACCAAGGG 2461 UUCCUG-GGC CAGG-(UUAA U)CC|G-CCC AGGGUGAGU| CGG|G-ACCU AAGACGAGGC 2521 C(GACA)-G- GCGU-AGCCG AUGG-ACAAC GGG-(UU-GA UAUU)C-CCG U|AC|cc-g- 2581 ug-uga-a-g c-gccca-ug gugaaucagu ga-uacuaac cauccugaag ccac-----g 2641 agaag-acc( uuc-g)gguc ucgagu---- ugguggaugc augggaccug aucugguagu 2701 agccaagcga u------ggg g--uga-cgc aggaaggua- gcug-a-|gc c-agu(ca-- 2761 guggua-au- --)ac-uggu -|guaa---- ---------- ---gcgu-gu agggc----- 2821 ---guga-cc uagg(ca-aa -u-)cc|g-- ggucgcacau ---------a gccu-gagac 2881 gug-augc|g ua-|------ -------gcc g(-auug--) aggc------ ------gaau 2941 --ucagu-ga uccu-aug-| cugccgagaa a-agccuc-u a-gcga---- ------gc-u 3001 uucaca--cg g|c|CCGUAC CCCAAACC(G ACACA)GG|U GG-UCAGGU- A-(GAGAA)U 3061 ACUAAGGCGA ||UCGAGAUA ACUAUGGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGCCCCCGUA AC(-UUCG)G GAGAAGGGGG |GCCCU---- -gucugguga c------gac 3181 a(-uuuac)u gucuga---- --gcugggu- ---GGGG-C| C(GCA)GAGA CCAGUGA-GA 3241 AG|CGACU-- ---GU(UUAC UAAAA)ACAC AGGUCCGUG| CGAAGUC(GU AA------)G 3301 ACGAUGU-AU ACGGACUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGACCGGUUA 3361 GUucc----- (U-UCG)--- gga-----GC GA-AGCUGAG AAUUUAAGCC |CCAGUAAAC 3421 |-GGC|GGUG GU(AACUAUA )ACCAUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-CUUCUCA GCUGUCUCAA CCGUAGACUC 3541 G|GCGAAAUU |GCAUUAC-G AG(UAAAGAU G)CUCGUUAC GCGCGGC-AG GACGAAAAGA 3601 CCCCG-GG|A CCU-UCACUA C|AGCUUGGU AUU|GGUGUU CGGUUCGGUU UGUGUAGGAU 3661 AGGUGGGAGA CUGUGAAG-- CGGUGAC(GC CA)GUUAUCG UGGAGUCGUU -G-UUGAAAU 3721 ACCACU|CUG A-UCGAAUUG GAC-CUCUAA -CCUCGG--- -ACCA(--UG -AUC)-UGGU 3781 UCAGG-GACA GUGCCUGGUG GG-UAGUUUA ACUG(GGG)C GGUU|GCCUC C(CAA-AAUG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGCCUGG(U UGGCAA)UCA GGUGUC-GA| 3901 GU(G|CAAGU )GCACAAGGG AGCUUGACUG UGAGAC(UGA CAG)GUCGUG CAGGGAC(GA 3961 AA)GU-CGGG |ACUAGUGAU CCGGCACCGG CA(AGUGGA) AGC|GGUGUC GCUCAAC|GG 4021 AUAAAAGGUA CCC|CGGG|G AUAACAG|GC UGA--UCUUC CCCAAGA(G- UCC-AUA)UC 4081 GACGGGA-UG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GGAG 4141 U---A)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGCAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CUCUAU -CC|GCCGCG C-G|CG-UUA 4261 GAAACUU|GA -|GGAAGGC- UGU------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGACGG|ACG AACCUCUGGU GUGCCAGU|U GUUCC(GC-C A-)GGAGCA- CCGCUGGUUA 4381 GCU-ACGUUC GGAAGGGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAGCC UGUUCC|AAG 4441 AUGAGGUUUC U|CA|CCCC- -(cucga-)- -GGGG--GU- AAGG|-CC|C CCGG-(CAGA 4501 CC-A)CCGGG -UUGAUAG|G CCAG|AACUG -GAAGUGCA- -(GUAA-)-- UGCAU|GC-A 4561 GGUG|A|CUG GUACUAAUA- GGCCGA-GG| ACUUAC-CAC AA------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS R.fascians 4759 bp RNA RNA 15-JUN-1997 DEFINITION Rhodococcus fascians.; 16S ribosomal RNA; 16S rRNA; 23S ribosomal RNA; 23S rRNA; 5S ribosomal RNA; 5S rRNA. ACCESSION Y11196 KEYWORDS 16S ribosomal RNA; 16S rRNA; 23S ribosomal RNA; 23S rRNA; 5S ribosomal RNA; 5S rRNA. SOURCE Rhodococcus fascians. ORGANISM Rhodococcus fascians. REFERENCE 1 (bases 1 to 6005) AUTHORS Pisabarro,A., Correia,A. and Martin,J.F. JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 6005) AUTHORS Pisabarro,A. TITLE Direct Submission JOURNAL Submitted (12-FEB-1997) A. Pisabarro, Universidad de Leon. F. Biologia, Area de Microbiologia, Campus de Vegazana, Leon E-24071, SPAIN STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: Y11196 BASE COUNT 773 a 709 c 1026 g 648 t 1603 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------UU GUAAGUAAU- --GAAGAGCG UACGGUGGAU 121 G|CCUUGG|C ACCAGG|AG| CC-GAUGAAG GA|CGUA(GG AG-GC-)U|- GCG-AUAAGC 181 CUCGGG|-GA GCU(G-UCAA CCG-)AGCUG UG-AUC-CGA GGGUG|UCCG AAUGGG(GAA 241 A)CCC|AGCA CGA-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --gugaug)- UCGUGUU-AC CC-GCAUCU( 481 GA-AUAUA-- UA)GGG-UGU -G-G--GAG- G-GAAC|GU- GGGGAAGU|G A(AACA)UCU 541 CAGUA-CCCA CAGGAAGAGA AAAC(-AAUA --)GUGAU|U CC-GUGAGUA GU(GGCGA)G 601 CGA-A-A-CG GA-UGA-GGC CAAAcu-ugu -gcgugugau accc-(ggca -)----ggg- 661 uugcguaugg aggguugugg guuugcauu- ------guc- gauuc(-ugc c-)ggaucgg 721 c---cgacag ugagaaauug ugg-uguu-a gucGAAgugg u-c(u-ggaa c)g-gccugu 781 |c(gua)gaG GG(UGAGAGU )CCCGUuAga cgaaaaacau u-gaca-cug ---------- 841 ---------- ucguugugga uaccc---AA GUAGCAGCGG G(CCCGUGGA AA)UCUGCUG 901 UGAAUCU-GU C-GG(GACCA C)CC-GAU-A AGCCUGA--- -AUACUCCCU GGUGACCGAU 961 AGCG-GAC-U AGUACC(GUG A)-GGGA-AA GGUGAAAA-G UACCCC(GG- GA-)-GGGA- 1021 -GUGAAA-UA GUACCUGAAA CCGU-GCGCU UACAA-U-CC GUCA-AACCG --gu-gcaug 1081 a-------(- ---cuug--) --------uc aug-gc-UGG UGAUG-CGUG CCU(UUU-GA 1141 AG|A)AUGA| --CCUGCGAG UUAGUGGCA- UGUCGC-GAG GUUAACCC-( --gugu)-GG 1201 G-GUAGCCGU AGC(GAAA-) GCGAGUCC(G AA-UA)GGGC GU----aucc ac(----cuu 1261 gu--)-gugg -----ug-ua G-UGGCGUGU UCUA-GACCC GAAGC-GGA- GUGA-UCUAC 1321 CCAUGGC|CA GGUUGAAGCG ACGG(UAAG) AC-GUCGUGG AGGACCGAAC C-CACUUAG( 1381 -GUUGAAAA) CUGAG|GGG- AUGAG-UUGU GGGUAGGGGU (-GAAAG)GC CAAUCAAACU 1441 CCGUGAUAGC UGGUUCUCCC CGAAAUGCAU (-UUAG)GUG CAGC|-GUCA CGUGU---U| 1501 -UCU|CACCG G|AGGUAG|A GCUACUGG-A UGGUCUA-GG |-GGGCC(ua ca-)AGCUUA 1561 CCGAAAUCAG -CCAAACUCC GAA-UG-|CC G-G-U-G--- agug--aga| GCG-UGGCAG 1621 UGAGAC--UG C-GGGC(GAU AAG)GUUCGU -AGUC-GAGA GGG(-AAACA G-)CCCAGAU 1681 CGCCAGCUAA G-GU|CCCU- AAGCG-UGUA -C-UAA-GUG ------GAAA AGGAUGUG-G 1741 GGUCGCGAA- GACAACCAGG AGGUUGGC(U UAGAAGCA)G CCAC-CCU|U (GAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CAA GU-GAU-CC- -UGC|GCCGA CAAU-GUAG- 1861 CGGGGCUCAA GUACA-C|C| ACCGAAGCU| GCGG|cacuc acaca--(au agcccgcuga 1921 auccu(ugcg )aggguucag ccagg----- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---u gugugggug- GG-UAGGGGA G|-----CGU 2221 C-GUG-CA-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-CCAU-G 2341 GAAGCAU-C- G-GC(-GUGA -)UCC-AGGU GUGG|AG-CU G-CGCGAGUG AGAAUGC-AG 2401 GC|AUG-AGU A--GCGAA-A GACGAG(UGA GAAA)CUCGU C|CGCC-GAA UGACCAAGGG 2461 UUCCUG-GC- CAGGU(UUAA U)CC|G-CCC AGGGUGCGU| CGG|G-ACCU AAGACGAGGC 2521 C(GACA)-G- GCGU-AGCCG AUGG-ACAAC GGG-(UU-GA UAUU)C-CCG U|AC|cc-g- 2581 ug-uaa-ccg c-gccca-ug gugaaucagu ga-cacuaac cacccugaau ccauaugacc 2641 gau-c-ucu( uuc-g)agag ugaggcgug- ugguggaugc gugggaccug aucugguagu 2701 agccaagcga u------ggg g--ugaacgc aggaaggua- gcug-g-|gc c-agu(ca-- 2761 gugguu-gu- --)ac-uggu -|guaa---- ---------- ---gccu-gu agggc----- 2821 ---gaac-gg uagg(ca-aa -u-)cc|g-- ccguucauca ---------a gccu-gagag 2881 gug-augc|g ua-|------ -------gcc g(-auug--) aggu------ ------gaau 2941 --ucagu-ga uccu-aug-| cugccgagaa a-agccuc-u a-guga---- ------gu-u 3001 guuaca--cg g|c|CCGUAC CCCAAACC(G ACACA)GG|U GG-UCAGGU- A-(GAGAA)U 3061 ACUAAGGCGA ||UCGAGAUA ACUAUGGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGCCCCCGUA AC(-UUCG)G GAGAAGGGGG |GCCCC---- -ugccgguga u------gga 3181 a(-cuugc)u uccuga---- --gcuggug- ---uGGG-C| C(GCA)GAGA CCAGUGA-GA 3241 AG|CGACU-- ---GU(UUAC UAAAA)ACAC AGGUCCGUG| CGAAGUC(GU AA------)G 3301 ACGAUGU-AU ACGGACUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGACCGGUUA 3361 GCca------ (G-UAA)--- ug------GC GA-ACGUGAG AAUUUAAGC- |CCAGUAAAC 3421 |-GGC|GGUG GU(AACUAUA )ACCAUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AUGGCGUAAC GA-CUUCUCA CGUGUCUCAA CCAUAGACUC 3541 G|GCGAAAUU |GCAUUAC-G AG(UAAAGAU G)CUCGUUAC GCGCGGC-AG GACGAAAAGA 3601 CCCCG-GG|A CCU-UCACUA C|AGCUUGGU AUU|GGUGUU CGGUUCGGUU UGUGUAGGAU 3661 AGGUGGGAGA CUGUGAA--- CGGUGAC(GC CA)GUUACUG UGGAGUCGUU -G-UUGAAAU 3721 ACCACU|CUG A-UCGUAUUG GAUACCUCAA -CCUCGG--- -ACCA(--UG -AUC)-UGGU 3781 UCAGG-GACA GUGCCUGGUG GG-UAGUUUA ACUG(GGG)C GGUU|GCCUC C(UAA-AAUG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGCCUGG(U UGGCAA)UCA GGUGUC-GA| 3901 GU(G|CAAGU )GCACAAGGG AGCUUGACUG UGAGAC(UGA CAA)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |ACUAGUGAU CCGGCACCGG CA(AGUGGA) AGC|GGUGUC GCUCAAC|GG 4021 AUAAAAGGUA CCC|CGGG|G AUAACAG|GC UGA--UCUUC CCCAAGA(G- UCC-AUA)UC 4081 GACGGGA-UG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GGAG 4141 U---A)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGCAC G-CGAGCUGG 4201 GUUUA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CUCUAU -CC|GCCGCG C-G|CG-UAA 4261 GAAACUU|GA -|GGAAGGC- UGU------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGACG-|ACG AACCUCUGGU GUGCCAGU|U GUUCC(AC-C A-)GGAGCA- CCGCUGGUUG 4381 GCU-ACGUUC GGAAGGGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAGCC UGUUCC|AAG 4441 AAUGAAGGUU U|CU|CACCC c(cucga-)- GGG-G--GU- AAGG|-CC|C CCGG-(CAGA 4501 CC-A)CCGGG -UUGAUAG|G CCAG|AACUG -GAAGUACA- -(GCAA-)-- UGUAU|GC-A 4561 GGUG|A|CUG GUACUAAUA- GGCCGA-GG| ACUUAC-CAC ~~~~~~~~|a aagaagcu~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS D.thermoph 4759 bp RNA RNA 11-DEC-1997 DEFINITION Dictyoglomus thermophilum.; 23S ribosomal RNA; 23S rRNA gene. ACCESSION Y15791 KEYWORDS 23S ribosomal RNA; 23S rRNA gene. SOURCE Dictyoglomus thermophilum. ORGANISM Dictyoglomus thermophilum. REFERENCE 1 (bases 1 to 3244) AUTHORS Ludwig,W., Strunk,O., Klugbauer,S., Klugbauer,N., Weizenegger ,M., Neumaier,J., Bachleitner,M. and Schleifer,K.H. TITLE Bacterial phylogeny based on comparative sequence analysis JOURNAL Electrophoresis In press STANDARD No information REFERENCE 2 (bases 1 to 3244) AUTHORS Ludwig,W. TITLE Direct Submission JOURNAL Submitted (04-DEC-1997) W. Ludwig, Lehrstuhl fuer Mikrobiologie, Technische Universitaet Muenchen, Muenchen, FRG STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: Y15791 BASE COUNT 749 a 705 c 1049 g 510 t 1746 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GU CAAAGUag-- --AAAGGGCG UACGGUGGAU 121 G|CCUAGG|C ACCAAG|GG| CC-GAAGAAG GA|CGCG(GC AG-GC-)G|- GCG-AAAcgc 181 cccggg|-ga gcu(G-CG-A GCA-)agcua ug-auc-cgg gggug|UCCG AAUGGG(GAA 241 A)CCC|ACUC CGG-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --guaaug)- ccggagu-au cccuaagg-( 481 ---ggaa--- --)acucUUA -G-G--GAG- GGGAAC|CA- GGGGAACU|G A(AACA)UCU 541 UAGUA-CCCU GAGGAAAAGA AAGA(-gaaa u-)UCGAU|U CC-CUGAGUA GU(GGUGA)G 601 CGA-AAG-GG GA-GGA-GCC UAAAccugug ugguguagaa --gcu-cgcg -----ggc-g 661 uugccacaca gggguagagg ga-uaagguc -----gggga aag(-ccgcg a-)cuuuccc 721 ---------- -guaggcgag guacacau-a gccGAAu-gg u-c(u-ggga a)g-gccagc 781 |c(aga)gaG GG(UGAGAGC )CCCGU-Agg c-gaaaugug uac-uaagcc uau------- 841 ---------- -ggaccuuac uccc----GA GUAGCGUGGG A(CACGGG-G AA)UCCUGCG 901 CGAAUCU-GG G-CG(GACCA C)UG-CCU-A AGGCUAA--- -AUACC-CUU GGUGACCGAU 961 AGCG-CA--U AGUACC(GUG A)-GGGA-AA GGUGAAAA-G AACCCC(GG- AG-)AGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCGU-ACGUC CACAA-G-GG GUAGGAGAGC --ua-ugcuc 1081 aaagaggg(- ---uuu---) cccuuuuuga gcaag--GCU CGACUGCGUG CCU(GUU-GA 1141 AG|A)AUGA| -GCCGGCGAG UUAA-UGCG- UGUGGC-GAG GUUAAGGGA( gugcag)UCC 1201 C-GGAGCCGA AGU(GAAA-) GCGAGCCU(G AA-UA)GGGC Gc-------- ---------- 1261 ---------- -----uu-a- G-UCACACGC AUUA-GACCC GAAAC-CAG- GCGA-GCUAC 1321 CCAUGGC|CA GGAUGAAGCG GGGU(UAAC) CC-CCCGUGG AGGUCCGAAC C-CGUUAGC( 1381 -AGUGAAAA) GCUAU|GGG- AUGAG-CUGU GGGUAGGAGU (-GAAAA)GC UAAUCGAGCC 1441 UGGAGAUAGC UGGUUCUCCC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCa gccga-uga| 1501 -agc|ccagG G|AGGUAG|A GC-ACUGG-U UGGGCGA-GG |-GGCGg(gg ga-)uCGCUG 1561 CCGAGUCCAG -UCAAACUCC GAA-UG-|CC C-u-g-g--g ugga----u| gGC-UGGGAG 1621 UCGGAC--CG U-GGGG(GAU AAG)CUCCAU -GGUC-GAGA GGG(-GAACA G-)CCCAGAU 1681 CAACAGCUAA G-GC|CCCA- AAGUC-CGGG -C-UAA-GUG ------GUAA AGGAGGUA-G 1741 CUUGGCGAA- GACAGUCAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG AU-----CGA GC-CAA-GC- -UGC|GCCGA AAAU--ACA- 1861 CGGGGCU-AA GCCCG-G|C| GCCGAAGCU| UUGG|guucu accuauc(uu cg-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)-gau agguagagc- GG-UAGGGGA G|-----CGU 2221 U-CCG-CU-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- -GU-AGGG-A 2341 GAAGGCG-G- A-CC(-GGAA -)GGA--CCG CUGG|ACGAG G-CGGAAGUG AGAAUGC-CG 2401 GC|AUG-AGU A--GCGAAAA GGAGGG(UGA GAAU)CCCUC C|CACC-GAA AGCCCGAGGU 2461 UUCCUG-GGU AAAG-(CUCG U)CU|U-CCC AGGGUUAGG| CGG|G-AGCU AAGCCGAGGC 2521 C(GAAA)-G- GCGU-AGGUG AUGC-ACAGC CGGu(ua--a uauu)C-CGG C|CC|ca-c- 2581 cu-acu-gac c-guua---- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 --au-accga u------gga g--gga-cgc aggagggua- ggu--gc|gc c-ugg(ug-- 2761 gugaca-ua- --)cc-aggu -|ccaa---- ---------- ---gccc-ca aggga----- 2821 --gggag-ug uagg(ca-aa -u-)cc|g-- cacucccguu gaa------- --cu-gaggg 2881 gug-augg|g ga-|------ -----gcccu c(-guga--) gagggc---- ------gaag 2941 -gc-auc-ga gcuc-aca-| cugccgagaa a-agcucc-u a-ggga---- -----ggu-c 3001 -agugg--gu g|C|CCGUAC CGCaAACC(G ACACA)GG|U GG-GCGAGG- U-(GAAGA)U 3061 CCAAAGGUGC ||GCGGGAUA ACCCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGGCCCCGUA CG(-UUCG)C AAGAAGGGGU |gcccga--- ---------- ----guaagg 3181 u(-gaaua)g ccuga----- ---------- --aaGGG-C| C(GCA)GUGA AGUGGCU-CU 3241 GG|GGACU-- ---GU(UUAC CAAAA)ACAC AGGUCUCUG| CUAAGGC(GU AGAA----)G 3301 CCGAUGU-AU AGGGGCUGA- GGCCUGCCCG GU|GCUG-GA A-GGUUAAGG GGAAGGGUUA 3361 GGgu------ (GaauA)--- ------acCC GA-AGCCCUG AACCGAAGCC |CCAGUGAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCAUGA AAGGCAUAAC CA-CUGGAGC GCUGUCUCAA CGAGGGGCCC 3541 G|GUGAAAUU |AGAGUGU-C CG(UGAAGAU A)CGGACUAC CCGUGGC-AG GACGGAAAGA 3601 CCCCGUGA|A GCU-UUACUG U|AGCCUGGC AUU|GAACUC UGGCACUGCA UGUAGAGGAU 3661 AGGUGGGAGG CUGAGAAG-- CGGGGGC(GC CA)GCCUCCG UGGAGCCGCC -G-GUGGAAU 3721 ACCACC|CUU G-UGGUGUUG GGG-UUCUAA -CCC-ca--- -aaag(-aag -agc)-cuuu 3781 ugGGG-GACA GUGCUUGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAGG 3841 UAAC)GGAGG C|G|C|CCAA AGGUAGGC|U UGGCACGG(U UAGAAA)UCG UGCCUG-AA| 3901 GU(G|UAAGG )GCGUAAGCC UGCCUGACUG UGAGGC(CGA CGG)GCCGAG CAGAGAC(GA 3961 AA)GU-CGGG |CCUAGUGAU CCGGUGGUCC CG(AGUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGUUA CUC|CGGG|G AUAACAG|GC UGA--UCUCG CCCGAGA(G- UCC-ACA)UC 4081 GACGGCG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|ACC GC|AUCC|UG GGGCU(GGAG 4141 A---A)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-UGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GCCACG G-G|CG-GAG 4261 GAAACUU|GA -|GGGGAAC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGCAG|GCG GACCUCUGGU GUACCAGU|U GUGCC(GU-C A-)GGUGCAG GAGCUGGGUA 4381 GCC-AAGUCC GCACGGGAUA AGCGCU(GAA AGCAUCUA)A GCGCGAAGCC CACCCC|AAG 4441 AUAAGGUUUC C|CA|CGGG- -(-gaaag)- -CCCG--GU- AAGG|-CA|C CUCC-(GAGA 4501 AG-A)GGAGG -UAGAUAG|G CCGG|AGGUG -GAAGCGCA- -(GCAA-)-- UGCGU|GG-A 4561 GCCG|A|CCG GUACUAAUA- UGCCG--AG| GCUUUG-ACG cc------|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS P.frisinge 4759 bp RNA RNA 11-JAN-191 DEFINITION Pectinatus frisingensis. ACCESSION No information KEYWORDS No information. SOURCE Pectinatus frisingensis. ORGANISM Pectinatus frisingensis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X68423 ID PF23SRRN standard; DNA; PRO; 2924 BP. XX AC X68423; XX DT 29-MAR-1993 (Rel. 35, Created) DT 29-MAR-1993 (Rel. 35, Last updated, Version 2) XX DE P.frisingensis gene for 23S rRNA XX KW 23S ribosomal RNA. XX OS Pectinatus frisingensis OC Prokaryota; Bacteria; Gracilicutes; Scotobacteria; OC Anaerobic gram-negative straight, curved and helical rods; OC Bacteroidaceae. XX RN [1] RP 1-2924 RA Ludwig W.; RT ; RL Submitted (08-SEP-1992) on tape to the EMBL Data Library by: RL W. Ludwig, Lehrst. fuer Mikrobiologie TU Muenchen, Arcisstr. 21, RL 8000 Muenchen 2, FRG XX RN [2] RP 1-2924 RA Ludwig W., Kirchof G., Klugbauer N., Weizenegger M., Betzl D., RA Ehrmann M., Hertel C., Jilg S., Tatzel R., Zitzelsberger H., RA Liebl S., Hochberger M., Shah J., Lane D., Wallnoef P.R.; RT "Complete 23S ribosomal RNA sequences of Gram-positive Bacteria RT with a low DNA G+C content"; RL Syst. Appl. Microbiol. 15:487-501(1992). XX CC *source: strain=DSM 20465; XX FH Key Location/Qualifiers FH FT rRNA 1..2924 FT /product="23S ribosomal RNA" XX SQ Sequence 2924 BP; 873 A; 635 C; 907 G; 509 T; 0 other; BASE COUNT 873 a 635 c 907 g 509 t 1835 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------AG UUAAGCGAA- --UAAGGGCA UAUGGUGGAU 121 G|CCUUGG|C GCCAGG|AG| UC-GAAGAAG GA|CGCG(GU AA-GC-)U|- GCG-AAAAGG 181 UACGGG|-GA AGA(G-CA-A GCA-)UCUAU UG-AGC-CGU ACAUG|UCCG AAUGGG(GCA 241 A)CCC|GGCA GGA-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----gaag)- UCCUGCC-AU CC-------( 481 ---gaaa--- --)------- -G-G--AAG- ACAAAC|CC- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCG GAGGAAGAGA AAUC(-AAAC --)GAGAU|A CC-CAAAGUA GC(GGCGA)G 601 CGA-AAU-GG GCACAA-GCC CAAaccguau -cac------ -----(uucg -)-------- 661 ---gugguac gggguugagg a---cugac- ---------- ---------- ---------- 721 ---------- aaaaaggaug gaacguuu-a ggcGAAu-ga c-c(u-ggaa a)g-gucagg 781 |c(aca)gcG GG(UAAAACC )CCCGU-Agc c-gaaaggcg ggucauccgg ---------- 841 ---------- ---gucagua -ucca---GA GUAUCGCGGG G(CACGAG-G AA)CCUUGCG 901 AGAAACA-GG G-GG(GACCA C)CC-UCC-A AGGCUAA--- -AUACUACCU GGCGACCGAU 961 AGCG-CA--U AGUACC(GUG A)-GGGA-AA GGUGAAAA-G AACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCGU-AUGUC UACAA-G-CA GUCGAAGCUC --c------- 1081 --------(- --guaag--) ---------- -----a-GAG CGACGGCGUG CCU(AUU-GA 1141 AG|A)AUGA| -ACCGGCGAG UUAC-AUUA- UAUUGC-GAG GUUAAGUG-( -gaaga)-CA 1201 C-GGAGCCGA AGC(GAAA-) GCGAGUCU(U AA-AA)GGGC GG-------- ---------- 1261 ---------- ------c-aa G-UAAUAUGG UGUA-GACCC GAAAC-CGCA GUGA-UCUAU 1321 GCAUGUC|CA GGUUGAAGCG CAGG(UAAA) AA-UGCGUGG AGGACCGAAC C-CGUGAGU( 1381 -GUUGAAAA) ACUUU|GGG- AUGAG-GUGU GCAUAGGGGU (-GAAAU)GC CAAUCGAACG 1441 CGGAGAUAGC UGGUUCUCCC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCA AGGGA---a| 1501 -cau|uacag a|CGGUAG|A GC-ACUGA-U CAGGCAA-GG |-GGGCg(ua a--)aGCCUG 1561 CC-AACCCUA GUCAAACUAC GAA-UG-|gc u-g-u-a--- auaa-a-au| aCU-UGGGAG 1621 UCAGAC--UG U-GAGU(GAU AAG)ACCCAU -AGUC-AAAA GGG(-AAACA G-)CCCAGAU 1681 CACCGGCUAA G-GU|CCCA- AAUGC-UGUG -C-UAA-GUG ------GAAA AGGAUGUA-G 1741 GACUUCAUA- AACAACCAGG AUGUUGGC(U CAGAAGCA)G CCAC-CAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CGA GA-GGC-UC- -UGC|GCCGA AAAU-GAAC- 1861 CGGGGCUCAA GCACA-G|A| ACCGAAGCC| GUGG|cagga uaua---(ga aa-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- uauauacug- GG-UAGGGGA G|-----CAU 2221 A-CUG-UA-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-GCGACU 2341 GAAGGUG-U- A-CC(-GUAA -)GGA--GCA UUGG|AGCGU A-CAGCAGAG AGAAUGC-CG 2401 GU|AUG-AGU A--ACGAAAA GAACAG(UGA GAAU)CUGUU C|CACC-GAA AGUCUAAGGG 2461 UUCCUG-GGC AACG-(CUCG U)CG|A-CCC AGGGUAAGU| CGG|G-ACCU AAGCCGAGGC 2521 U(GAAA)-A- GCAU-AGGCG AUGG-ACAAC AGG-(CG-AA AAUU)C-CUG U|AC|cg-u- 2581 ug-uau-uuu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 gacugagcga a------gga g--uga-cac agcaggcag- cucg-ag|cg c-gcg(ga-- 2761 -uggaa-ga- --)-g-cgcg -|ucgaa--- ---------- ---gccg-gu aggc------ 2821 --ugcag-ua aagg(ua-aa -u-)cc|g-- uacugcaaaa ---------- ggcc-gagaa 2881 gug-acag|a ua-|------ ---ggcgaau c(-uucg--) gaggagcc-- ------gaau 2941 --uugag-ca ugcc-aca-| cugucgagaa a-agcuuc-u a-gcga---- ------ga-a 3001 -augca--gc g|C|CCGUAC CGCAAACC(G ACACA)GG|U AG-ACGGGG- A-(GAGAA)U 3061 CCUAAGGUGC ||GCGGGACA ACCCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UAUAUCCGUA AC(-UUCG)G GAAAAGGAUA |gccgcaggc -ugugaa--- -------guc 3181 c(-gaac-)g gac------- --ggagcgg- caggcgg-U| G(GCA)CAAG AGAGGCC-CA 3241 AG|CGACU-- ---GU(UUAG CACAA)ACAC AGGUGCCUG| CGAAAGA(GC AA------)U 3301 CUGACGU-AU AGGUGCUGA- CACCUGCCCG GU|GCCG-GA A-GGUUAAGA AGAGGAGUCA 3361 GGA------- (G-CAA)--- -------UCC GA-AGCCCCG AAUUGAAGCC |CCGGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGUGUAAC GA-CUUGGGC ACUGUCUCAA CGAGGGACCC 3541 G|GUGAAAUU |GAAAUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-UG GACAGAAAGA 3601 CCCCAUGG|A GCU-UUACUG U|AACCUGGC AUU|GAUAUU CGGUAAAUGA CGUACAGGAU 3661 AGGUGGGAGA CUUGGAAU-- UAGAGGC(GC AA)GUCUUUA AGGAGUCAUU -G-UUGGGAU 3721 ACCACC|CUU C-AUUUAACG GGC-AUCUAA -CUG-AA--- -Agag(---u -aac)-gaaC 3781 UUCAA-GACA GUGCCAGGCG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(GAA-AGAG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGCGCGG(C CAGAAA)UCG CGCAAA-GA| 3901 GU(G|CAAAG )GCAGAAGGG AGCUUGACUG CGAGAC(CAA CAA)GUCGAG CAGGUGC(GA 3961 AA)GC-AGGG |CUUAGUGAU CCGGUGGUUC CG(AGUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|UGGG|G AUAACAG|GC UAA--UCUCU CCCAAGA(G- UCC-AUA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC AC|AUCC|UG GGGCU(GGAG 4141 C---A)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGUGGUAC G-UGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCAUAU -CC|AUCGCG G-G|CG-AAA 4261 GAAACUU|GA -|AGAGGGC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG AACCAAUGGU GUACCAGU|U AUCCC(GC-C A-)GGGGUA- CAGCUGGGUA 4381 GCU-ACGUUC GGAAAGGAUA AACGCU(GAA AGCAUCUA)A GCGUGAAACC AGCUUU|AAG 4441 AUGAGGUUUC C|CA|GAAC- -(-GCAA-)- -GUUU--GG- AAGG|-CA|C CUUG-(AAGA 4501 AG-A)CGAGG -UAGAUAG|G CCGG|GAGUG -GAAGUAUG- -(GUGA-)-- CAUAU|GA-A 4561 GCGG|A|CUG GUACUAAUA- AGCCGA-GA| GCUUAA-CUU G-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS P.niger 4759 bp RNA RNA 11-JAN-191 DEFINITION Peptococcus niger. ACCESSION No information KEYWORDS No information. SOURCE Peptococcus niger. ORGANISM Peptococcus niger. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X68428 ID PN23SRRN standard; DNA; PRO; 2900 BP. XX AC X68428; XX DT 29-MAR-1993 (Rel. 35, Created) DT 29-MAR-1993 (Rel. 35, Last updated, Version 2) XX DE P.niger gene for 23S rRNA XX KW 23S ribosomal RNA. XX OS Peptococcus niger OC Prokaryota; Bacteria. XX RN [1] RP 1-2900 RA Ludwig W.; RT ; RL Submitted (08-SEP-1992) on tape to the EMBL Data Library by: RL W. Ludwig, Lehrst. fuer Mikrobiologie TU Muenchen, Arcisstr. 21, RL 8000 Muenchen 2, FRG XX RN [2] RP 1-2900 RA Ludwig W., Kirchof G., Klugbauer N., Weizenegger M., Betzl D., RA Ehrmann M., Hertel C., Jilg S., Tatzel R., Zitzelsberger H., RA Liebl S., Hochberger M., Shah J., Lane D., Wallnoef P.R.; RT "Complete 23S ribosomal RNA sequences of Gram-positive Bacteria RT with a low DNA G+C content"; RL Syst. Appl. Microbiol. 15:487-501(1992). XX CC *source: strain=DSM 20475; XX FH Key Location/Qualifiers FH FT rRNA 1..2900 FT /product="23S ribosomal RNA" XX SQ Sequence 2900 BP; 856 A; 650 C; 853 G; 541 T; 0 other; BASE COUNT 856 a 650 c 853 g 541 t 1859 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGUAAC- --UAAGGGCA UGCGGUGAAU 121 G|CCUAGG|C GCCGGG|AG| CC-GAAGAAG GA|CGCG(GU AA-GC-)U|- GCG-AAAAGC 181 UACGUU|-GA GUC(G-CA-A GCA-)GACCU UG-ACA-CGU AGAUA|UCCG AAUAGG(ACA 241 A)CCC|UGCC GGA-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --guuaug)- UCCGGCA-AC CU-UAAAGC( 481 CA-AUCCA-- UA)ACU-UUA -A-G--GAG- GGCAAC|CC- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCG GAGGAAGAGA AAGA(-AAAC --)UCGAU|U CC-CCCAGUA GC(GGCGA)G 601 CGA-AGC-GG GA-AGA-GCC CAAAccga-- ---------- -----(gcaa -)-------- 661 --------uc gggguaa-gg a---cacuca aa-------- ---------- ---------- 721 ---------- ---aagauau agcguuuu-a gcaGAAu-ga c-c(u-ggga a)a-gucagc 781 |c(aua)gaA GG(UUAAAGC )CCUGU-Acg c-gaaaagac aaaauauccg ---------- 841 ---------- ---gagugga -uccg---GA GUACCACGAG G(CACGAG-G AA)UCUCGUG 901 GGAAGGC-GG G-GG(GCCCA C)CC-CCC-A AGGCUAA--- -AUACUCCCC GGCGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCUC(GG- AA-)GAGGA- 1021 -GUGAAA-UA GAACCUGAAA CCGC-AUGCU UACAA-U-CA GUCACAGCUC ---c------ 1081 --------(- ---acau--) ---------- ----gc-GAG UAGUGGCGUA CUU(UUU-GU 1141 AG|A)ACGG| -ACCGGCGAG UUGC-GUUA- AGAAGC-CAG GUUAAG---( -gaaa-)--- 1201 C-GGAGCCAU AGC(GAAA-) GCAAGUCU(U AA-UA)GGGC GC-------- ---------- 1261 ---------- --------aa G-UUUCUUGG CGCA-GACCC GAAAC-CGG- GUGA-UCUAC 1321 CCAUGAG|CA GGUUGAAGCG UUGG(UAAA) AC-AACGUGG AGGACCGAAC C-AGGUGUC( 1381 -GUUGAAAA) GACAU|UGG- AUGAC-UUGU GGGUAGGGGU (-GAAAU)UC CAAUCGAACC 1441 CGGAGAUAGC UGGUUCUCCU CGAAAUAGCU (-UUAG)GGC UAGC|-CUCA AGca---aa| 1501 -gac|cuacG G|AGGUAA|A GC-ACUGA-C UGGAUGC-GG |-GGGCU(uc ac-)CGCCUA 1561 CCAAAUCUUA -UCAAACUCA GAA-UG-|cc g-u-a-g--g ggag---uu| aCU-UGGGAG 1621 UCAGAC--UA U-GGGG(GAU AAG)CUUCAU -AGUC-AAAA GGG(-AAAGA A-)CCCAGAC 1681 CGUCGUCUAA G-GU|CCCC- AAGUU-GGUG -U-UAA-GUG ------GAAA AGGAUGUA-G 1741 AAUCGCUCA- GACAACCAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (AAG)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CCA GG-GGU-UC- -CGC|GCCGA AAAU-GUAA- 1861 CGGGGCUCAA ACACC-A|C| ACCGAAGAC| ACGG|aaugc -------(au a--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ----gcauu- GG-UAGAGGA G|-----CGA 2221 U-CCA-UU-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-AGAA-C 2341 GAAGCGA-G- A-GC(-GCAA -)GCG--CUC GUGG|ACCCA A-UGGAAGAG AGAAUGC-CG 2401 GU|AUA-AGU A-cACGAUAA AAGAGG(UGA GAAU)CCUCU U|CGCC-GAA AGUCUAAGGA 2461 UUCCUG-GGG AAGG-(CUCG U)CC|G-CCC AGGGUAAGU| CGG|G-ACCU AAGGCAAGGC 2521 C(GAAA)-G- GCGU-AGUCG AUGG-GAAAC AGG-(UA-GA AAUU)C-CUG U|AC|cu-a- 2581 uc--uu-auu ua-------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 --augacca- c------gca g--uga-cgc agaagggua- cagc-g-|ag c-gcc(cagu 2761 -uggug-a-- --)gg-cguu c|aagc---- ---------- ---gcgu--- aggg------ 2821 --cgaug-cg uagg(ca-aa -u-)cc|g-- cgcaucacga ---------- gccu-gagac 2881 gug-acga|c ga-|------ -------gug a(-aaca--) uaguaac--- ------gaag 2941 --uccug-aa uccc-ccg-| cugccaagaa a-agcugc-u aagga----- ------aa-a 3001 -uaaga--ua g|C|CCGUAC CGCAAACC(G ACACA)GG|U AG-ACAGGU- A-(GAGAA)U 3061 ACUAAGGCGC ||GCGAGAUA ACUCUUGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGAACCCGUA AC(-UUCG)G GAAAAGGGUU |gcuccccc- ---------- -gugugagua 3181 u(-gaaca)a uacagagcau ---------- aagggag-C| C(GCA)GAGA AGAGGUC-CA 3241 GG|CGACU-- ---GU(UUAG CAAAA)ACAC AGGUCAUUG| CCAAAUC(GU AA------)G 3301 AUCACGU-AU AAUGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGG GGAAGAGU-- 3361 ---------- (G-CAA)--- ---------- ----GCUUUG AACCGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGUAAC GA-UCUGGAC GCUGUCUCAA CAAGGGACUC 3541 G|GUGAAAUU |GAAUUAC-C GG(UAAAGAU G)CCGGUUAC CUGCGAU-AG GACAGAAAGA 3601 CCCCAUGG|A GCU-UUACUG C|ACCCUGAU AUU|GGGUUU CGGUUAUUUA UGUACAGCAU 3661 AGGUGGGAGA CAGCGAAG-- CGAGAGC(GC CA)GUUUUCG CAGAGUCACC -C-UUGGGAU 3721 ACCACC|CUU A-AGUGAUUG AAA-UUCUAA -CAAGGA--- -ACCA(--UU -AUC)-UGGU 3781 UAUUG-GACA UUGUCAGGCA GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AGAG 3841 UAAC)GGAGG C|G|C|UCAA AGGUUCCC|U CAGAACGG(A UGGAAA)UCG UUCAUA-GA| 3901 GU(G|UAAAG )GCAGAAGGG AGCUUGACUG CGAGAG(CAA CAA)CUCGAG CAGGAAG(GA 3961 AA)CU-UGGA |CUUAGUGAU CCGGCGGUUG CG(AGUGGA) AGU|GCCGUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|UGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UUC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GUAG 4141 U---A)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|AUCGUA G-G|CG-UAG 4261 GAUAUUU|GA -|GAGGCAC- UGA------- -------CCC (UAGUAC(GA GA)GGACC)G 4321 GGUUGG|ACA CACCGCUGGU UAACCGGU|U GUCGU(GC-C A-)ACGGCA- UAGCCGGGUA 4381 GCU-AAGUGU GGCCAUGAUA AACGCU(GAA AGCAUCUA)A GCGUGAAGCA GCCCUC|AAG 4441 AUGAGAUAUC C|CA|CUAG- -(-GAUA-)- -CUAG--AU- AAGA|-CC|C CAGA-(GAGA 4501 CG-A)ACUGG -UAGAUAG|G UCGG|GCGUG -UAAGAAGA- -(GCAA-)-- UCUUU|UG-A 4561 GCGG|A|CCG AUACUAAUA- GGUCGA-AG| ACUUAA-CCG A-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS GRAM+.LAC 4759 bp RNA RNA 17-JAN-1993 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 4759 others ORIGIN 1 -x~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~-)~|- ~~~~~~~~~~ 181 ~~~~~~|-~~ ~~~(~-~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~--- ---------- ---------- 301 -----~~~~~ ~~~~~~~~~~ ~~~~~~---- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- -----~-~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~- ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~| ~~~-~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- 721 ---~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~-~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~-- -~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ -~~~-~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| -~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 -~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 -~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~-~ ~~~~~~~~~~ |-~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~-~~~~| ~~~~~~~~~~ 1621 ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~-~~~~~ ~-~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~-~~~ ~----~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~-~- -~~-|~~~~~ ~~~~-~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~|-----~~~ 2221 ~-~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~- ~-~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 2401 ~~|~~~~-~~ ~-~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~-~~ ~~~~~~-~~~ ~~~~|~~~~- 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~------~~~ ~~--~~-~~~ ~~~~~~~~~- ~~~~-~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ---------- --~~~~~~~~ ~~~~~~~~-- 2821 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~----~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 --~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~-~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~- ---~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~---~~~~~ 3301 ~~~~~~~~-~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~-~~ ~-~~-~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~( ~~~)~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ 3721 ~~~~~~|~~~ ~~~-~~~~~~ ~~~~~-~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~-~~-~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~|~|~|~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~---~ ~~~~~~-~~~ 3901 ~|~~(~|~~~ ~~)~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~~~|~~~~ ~~~~~~~~~| 4021 ~~~~~~~~~~ ~~~~~|~~~~ |~~~~~~-~| ~~~~~--~~~ ~~~~~~~~~( ~~~~~~~~~) 4081 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~|~~~~|~~~ ~~~~~~~~~| ~~~~~(~~~~ 4141 ~~~~~--)-~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ -~~~~~~|~~ ~~~~~~~|~~ 4261 ~~~~~~~~~~ -|~-|~~~~~ -~~~~~~--- ---------- -~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4381 ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 |~~~~~~~~~ ~~~~~|~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~|~~~~~-~ 4501 ~~~~~~-~~~ ~~~~~~~~~~ ~~|~~~~~|~ ~~~~~-~~~~ ~~~~~~~~~~ ~--~~~~~~| 4561 ~~~~|~~~-~ |~~~~~~~~~ ~~~~~~~~-- ~~~|~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~||||| // LOCUS B.sp.PS3 4759 bp RNA RNA 11-JAN-191 DEFINITION Bacillus sp.. ACCESSION No information KEYWORDS No information. SOURCE Bacillus sp. ORGANISM Bacillus sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X60981 LOCUS BACTRN 4050 bp ds-DNA BCT 13-AUG-1991 DEFINITION Bacillus sp. strain PS3 genes for tRNA-Asn, tRNA-Ser, tRNA-Glu, tRNA-Val, tRNA-Met and tRNA-Asp. ACCESSION X60981 KEYWORDS tRNA-Asn; tRNA-Asp; tRNA-Glu; tRNA-Met; tRNA-Ser; tRNA-Val; transfer RNA. SOURCE Bacillus sp. DNA. ORGANISM Bacillus sp. Prokaryota; Bacteria; Firmicutes; Endospore-forming rods and cocci; Bacillaceae. REFERENCE 1 (bases 1 to 4050) AUTHORS Fink,P.S., Zhao,Y., Prochaska,L.J. and Leffak,M. TITLE Structural RNA genes from the thermophilic Bacillus SP. strain PS3 JOURNAL Unpublished (1991) STANDARD full automatic COMMENT *source: strain=PS3; From EMBL entry BSTRN; dated 02-AUG-1991. FEATURES Location/Qualifiers rRNA 75..2988 tRNA 3182..3256 /anticodon=(pos:3214..3216,aa:asn) /gene="tRNA-Asn" tRNA 3261..3351 /anticodon=(pos:3295..3297,aa:ser) /gene="tRNA-Ser" tRNA 3366..3436 /anticodon=(pos:3399..3401,aa:glu) /gene="tRNA-Glu" tRNA 3446..3521 /anticodon=(pos:3479..3481,aa:val) /gene="tRNa-Val" tRNA 3816..3892 /anticodon=(pos:3850..3852,aa:met) /gene="tRNA-Met" tRNA 3898..3972 /anticodon=(pos:3931..3933,aa:asp) /gene="tRNA-Asp" BASE COUNT 1023 a 968 c 1287 g 772 t ORIGIN BASE COUNT 733 a 693 c 985 g 503 t 1845 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGCUGG- --AAAGGGCG CACGGUGGAU 121 G|CCUUGG|C ACUAGG|AG| CC-GAUGAAG GA|CGGG(GC AA-AC-)G|- CCG-AAACGC 181 UUCGGG|-GA GCU(G-UA-A GCA-)AGCGU UG-AUC-CGG AGAUG|UCCG AAUGGG(GGA 241 A)CCC|ACUG UCC-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --guaaug)- GGGCAGU-AU CC-AUGCCU( 481 GA-AUCCA-- UA)GGG-CGU -G-G--AGG- GcacAC|CC- GGGGAACU|G A(AACA)UCU 541 UAGUA-CCCG GAG-AGAAGA AAGC(-AACC --)GCGAU|U CC-CUGAGUA GC(GGCGA)G 601 CGA-A-ACGG GA-ACA-GCC CAAAccaaga -gg------- -----(cgag u)-------- 661 ----ccucuu gggguuguag gaccgcucac g--------- ---------- ---------- 721 ---augggag ugagaaaggg acg-gggu-a gacGAAccgg u-c(u-ggaa c)g-gccggc 781 |c(aga)gaA GG(UGAGAGC )CCUGU-Agu c-gaaacuuc guucccuccc ---------- 841 ---------- ----gagcgg auccu---GA GUACGGCGGG A(CACGAG-G AA)UCCCGUC 901 GGAAGCA-GG G-AG(GACCA U)CU-CCC-A AGGCUAA--- -AUACUCCCU AGUGACCGAU 961 AGUG-CAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- GA-)GGGGA- 1021 -GUGAAA-GA GAACCUGAAA CCGU-GUGCC UACAA-G-UA GUCAGAGCCC --g------- 1081 --------(- ---uuga--) ---------- -----u-ggG UGAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UGAC-GAUG- GCGUGC-GAG GUUAagcc-( -gaaga)-gg 1201 c-GGAGCCGC AGC(GAAA-) GCGAGUCU(G AA-CA)GGGC GU-------- ---------- 1261 ---------- -----gu-ga G-UACGUCGU CGUC-GACCC GAAAC-CAG- GUGA-UCUAC 1321 CCAUGUC|CA GGGUGAAGGC CGGG(UAAC) AC-CGGCUGG AGGCC-GAAC C-CACGCAC( 1381 -GUUGAAAA) GUGCG|GGG- AUGAG-GUGU GGGUAGGGGU (-GAAAU)GC CAAUCGAACU 1441 UGGAGAUAGC UGGUUCUCCC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCG GGUuu--ag| 1501 -gag|UCUUG G|AGGUAG|A GC-ACUGA-U UGGGCUA-GG |-GGCCA(aa cc-)GGGUUA 1561 CCGAACCCAG -UCAAACUCC GAA-UG-|CC A-AUg-a--- cuua----u| gcc-cGGGAG 1621 UCAGAC--UG C-GAGU(GAU AAG)AUCCGU -GGUC-GAGA GGG(-GAACA G-)CCCAGAC 1681 CGCCAGCUAA G-GC|CCCG- AAGUG-CACG -U-UCA-GUG ------GAAA AGGAUGUG-G 1741 AGUUGCCGA- GACAACCAGG AUGUUGGC(U UAGAAGCA)G CCAC-CAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CGA GU-GAC-UC- -UGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACGUG-C|C| GCCGAAGCU| GCGG|gauga cc-----(gu u--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --ggucauc- GG-UAGGGGA G|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCAG-A 2341 GAAGCCA-G- A-CC(-GGAA -)G-A--CUG GUGG|AGCGC U-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGAAAA CAGAGG(UGA GAAU)CCUCU G|CGCC-GAA AGCCUAAGGG 2461 UUCCUG-AGG AAGG-(UUCG U)CC|G-CUC AGGGUUAGU| CGG|G-ACCU AAGCCGAGGC 2521 C(GAAA)--- -CGU-AGGUG AUGG-ACAAC AGG-(UU-GA GAUU)C-CUG U|AC|ca-c- 2581 cuucuu-ccc --guu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---ugagcga u------ggg g--gga-cgc aggaggaua- gggc-ga|gc a-ggc(ggc- 2761 -uggaa-ga- --)gc-cugu -|ccaa---- ---------- ---gccg-ug acg------- 2821 --ugauc-cg cagg(ca-aa -u-)cc|g-- cggaucauaa ---------- ggcc-aagcg 2881 gug-acgg|c ga-|------ -------cgg a(-gua---) uccg------ ------gaag 2941 --ucccc-ga uuuc-aca-| cugccaagaa a-agccuc-u a-gcga---- ------gg-g 3001 -aagag--gu g|c|CCGUAC CGCAAACC(G ACACA)GG|U AG-GCGAGG- A-(GAGAA)U 3061 CCUAAGGCGC ||GCGGGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCUCUuu-- ---------- ------uggg 3181 u(-gaaga)g cccu------ ---------- -gaAGAG-C| C(GCA)GUGA AAAGGCC-CA 3241 AG|CGACU-- ---GU(UUAU CAAAA)ACAC AGGUCUCUG| CGAAGCC(GA AA------)G 3301 GCGACGU-AU AGGGGCUGA- CACCUGCCCG GU|GCUG-GA A-GGUUAAGG GGAGCGCUUA 3361 GC-------- (G-GAA)--- --------GC GA-AGGUGCG AACCGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGUGUAAC GA-CUUGGGC GCUGUCUCAA CGAGAGACCC 3541 G|GUGAAAUU |AUACUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCGUGG|A GCU-UUACUG C|AGCCUGAU AUG|GAAUUU UGGUAUCGCU UGUACAGGAU 3661 AGGUGGGAGC CUGGGAAG-- CCGGAGC(GC CA)GCUUCGG UGGAGGCGGC -G-GUGGGAU 3721 ACCACC|CUG G-CGGUAUUG AAA-UUCUAA -CCCGCA--- -CCCC(--UU -AGC)-GGGG 3781 UGGGA-GACA GUGUCAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(CAA-AAGG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(U UGGAAA)UCA UUCGGA-GA| 3901 GU(G|CAAAG )GCACAAGGG AGCUUGACUG CGAGAC(GGA CAG)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|CGGG|G AUAACAG|GC UGA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-C-AUU AAAGCGGUAC G---AGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-GAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACG CACCGCUGGU GUACCAGU|U GUCCC(GC-C A-)G---CA- CCGCUGGGUA 4381 GCU-AUGUGC GGACGGGAUA AGCGCU(GAA AGCAUCUA)A GCGUGAAGCC CCCCUC|AAG 4441 AUGAGAUUUC C|CA|CCGC- -(-GCAA-)- -acg---GU- AAGA|-UC|C CUCG-(AAGA 4501 UG-A)CGAGG -UCGAUAG|G UCCG|AGGUG -GAAGCGUG- -(GUGA-)-- CACGU|GG-A 4561 GCUG|A|CGG AUACUAAUC- GAUCGA-GG| GCUUAA-CCA A-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS B.alcaloph 4759 bp RNA RNA 11-JAN-191 DEFINITION Bacillus alcalophilus. ACCESSION No information KEYWORDS No information. SOURCE Bacillus alcalophilus. ORGANISM Bacillus alcalophilus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: D11459 ID BAC23SRR unannotated; RNA; PRO; 2930 BP. XX AC D11459; XX DT 13-JUL-1992 (Rel. 32, Created) DT 13-JUL-1992 (Rel. 32, Last updated, Version 1) XX DE B. alcalophilus 23S ribosomal RNA, partial sequence. XX KW 23S ribosomal RNA; 23S rRNA. XX OS Bacillus alcalophilus OC Prokaryota; Bacteria; Firmicutes; Endospore-forming rods and cocci; OC Bacillaceae; Bacillus. XX RN [1] RP 1-2930 RA Sutherland K.J., Kudo T., Horikoshi K.; RT ; RL Unpublished. XX CC These data kindly submitted in computer readable form by: Toshiaki CC Kudo Riken Institute, Microbiology 2-1 Hirosawa, Wako Saitama CC 351-01 Japan Phone: 0484-62-1111 x3443 Email: CC tkudo@rkna50.riken.go.jp Fax: 0484-62-4672 XX FH Key Location/Qualifiers FH XX SQ Sequence 2930 BP; 800 A; 655 C; 899 G; 576 T; 0 other; BASE COUNT 770 a 636 c 886 g 555 t 1912 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------nn nnnnnnnnn- --nnnnnnnn nnnnnnnnnn 121 n|nnnnnn|n nnnnnn|nn| nn-nnnnnnn nn|nnnn(nn nn-nn-)n|- nnn-nnnnnn 181 nnnnnn|-nn nnn(n-nn-n nnA-)AGCUU UG-AUC-CGG GGAUA|UCCG AAUGGG(GGA 241 A)CCC|ACCA UCC-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --guaaug)- GGAUGGU-AC CC-AUACCU( 481 GA-AUCUA-- UA)GGG-UAU -GAG--GAG- GcagAC|CU- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCA GAGGAAGAGA AAGC(-AAAU --)GCGAU|U UC-CUGAGUA GC(GGCGA)G 601 CGA-A-ACGG AA-ACA-GCC CAAAccaaga -gg------- -----(cuug -)-------- 661 ----ccucuu gggguuguag gacacucuau a--------- ---------- ---------- 721 -----cggag ucagaaagaa acg-aagu-a gguGAAgcga c-c(u-ggaa a)g-guccgu 781 |c(aca)gaA GG(UAACAAC )CCUGU-Agc c-gaaacuuc guuuccucca ---------- 841 ---------- ----gagugg auccu---GA GUACGGCGGG A(CACGUG-A AA)CCCCGUC 901 GGAAGCU-GG G-AG(GACCA U)CU-CCC-A AGGCUAA--- -AUACUCCCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-AA GAUCCUGAAA CCGU-GUGCC UACAA-C-UA GUUGGAGCCC --a------- 1081 --------(- ---uuaa--) ---------- -----c--gG UGACAGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUG- UCGUGC-AAG GUUAAgcu-( -gaaaa)-aG 1201 C-GGAGCCGC AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC GA-------- ---------- 1261 ---------- -----aa-ua G-UACGCCGU CGUA-GACCC GAAAC-CGU- GUGA-UCUAC 1321 CCAUGUC|CA GGGUGAAGUU CAGG(UAAC) AC-UGAAUGG AGGCCCGAAC C-CACGCAU( 1381 -GUUGAAAA) AUGCG|GGG- AUGAG-GUGU GGGUAGGGGU (-GAAAU)GC CAAUCGAACU 1441 UGGAAAUAGC UGGUUCUCCC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCG AGGg---aa| 1501 -gag|UCUUG G|AGGUAG|A GC-ACUGA-U UGGACUA-GG |-GGUCC(cc acc)GGGUUA 1561 CCGAAUUCAG -UCAAACUCC GAAuUG-|CC A-AUG-a--- cuua----u| ccu-cgggAG 1621 UCAGAC--UG C-GAGU(GCU AAG)AUCCGU -AGUC-AAGA GGG(-AAACA G-)CCCAGAC 1681 CAUCAGCUAA G-GU|CCCA- AAGUA-UACG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 AGUUGCCCA- GACAACCAGG AUGUUGGC(U UAGAAGCA)G CCAC-CAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CGA GU-GAC-UC- -UGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACGUA-U|C| ACCGAAGCU| AUGG|auucg cacc---(gu u--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ggugcgagu- GG-UAGGGGA G|-----CGU 2221 U-CUA-CG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-GCAG-C 2341 GAAGUCA-G- A-CC(-GAGA -)GGA--CUG GUGG|AGCGC G-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGAAAA GAGGGG(UGA GAAU)CCCCU C|CGUC-GAA AGCCCAAGGU 2461 UUCCUG-AGG AAGG-(CUCG U)CC|G-CUC AGGGUUAGU| CGG|G-ACCU AAGCCGAGGC 2521 C(GAAA)-G- GCGU-AGGCG AUGG-ACAAC AGG-(UG-GA AAUU)C-CUG U|AC|ca-c- 2581 cuccuc-acc --guu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---ugagcaa u------ggg g--gga-cgc aagaaggua- gggu-aa|gc g-cgc(uga- 2761 -uggag-au- --)gc-gcgu -|ccaa---- ---------- ---ggag-uu aggc------ 2821 --uggga-ag uagg(ca-aa -u-)cc|g-- cuuuccauua ---------a ggcu-gagcu 2881 gug-auug|c ga-|------ ------ggga a(auuauag) uacc------ ------gaag 2941 --uuccu-ga uccu-aaa-| cugccaagga a-agccuc-u a-gcga---- ------gg-u 3001 -gagag--gu g|c|CCGUAC CGCAAACC(G ACACA)GG|U AG-GCGAGG- A-(GAGAA)U 3061 UCUAAGACGC ||UCGGGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCUCUG--- ---------- ----auaggg 3181 u(-gcaa-)g cccga----- ---------- --GAGAG-C| C(GCA)GUGA AAAGAUC-CA 3241 AG|CGACU-- ---GU(UUAG CAAAA)ACAC AGGUCUCUG| CGAAGCC(GC AA------)G 3301 GCGAAGU-AU AGGGGCUGA- CACCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGGGGUUA 3361 UC----cc-- (U-UCG)g-- --------UA GA-AGCUCUG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCACACGG AUGGUGUAAC GA-CGUGGAU ACUGUCUCAA CGAGAGACCC 3541 G|GUGAAAUU |AUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCAUGG|A GCU-UUACUG U|AGCUUGAU AUU|GGAUGU UGGUACCGUU UGUACAGGAU 3661 AGGUAGGAGC CUUGGAAG-- CCGGAGC(GC UA)GCUUCGG UGGAGGCGCU -G-GUGGGAU 3721 ACUACC|CUG A-CGGUAUUG ACA-UUCUAA -CCUCGA--- -ACCG(--UG -AUC)-CGGU 3781 UCAGG-GACA GUGUCAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-ACAG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(U UGGAAA)UCA UUCGUA-GA| 3901 GU(G|CAAAG )GCAAAAGGG AGCUUGACUG CGAGAC(CUA CAA)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGACGGUGC CG(UAUGGA) AGG|GCCGUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|UGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UUCAACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GAAG 4141 U---A)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-UAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACA CACCGCUGGU GUACCAGU|U GUUCC(GC-C A-)GGAGCA- UCGCUGGGUA 4381 GCU-ACGUGU GGACGGGAUA AGUGCU(GAA AGCAUCUA)A GCAUGAAGCC CCCCUC|AAG 4441 AUGAGAUUUC C|CA|UGGA- -(-GUAAa)- -UCCA--GU- AAGA|-CC|C CUUA-(GAGA 4501 UG-A)UGAGG -UUGAUAG|G UCUG|GUGUG -GAAGCGUG- -(GCGA-)-- CACGU|GA-A 4561 GCUG|A|CAG AUACUAAUC- GGUCGA-GG| ACUUAU-CCA A-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS B.stearo.1 4759 bp RNA RNA 02-JAN-1984 DEFINITION Bacillus stearothermophilus. ACCESSION No information KEYWORDS No information. SOURCE Bacillus stearothermophilus. ORGANISM Bacillus stearothermophilus. REFERENCE 1 (bases 1 to 3244) AUTHORS No information JOURNAL B.stearothermoph:who:published STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 4759) Corresponding GenBank entry: K02663 Phylo:Eubacteria,GM+,lowGC,Bacillus BASE COUNT 737 a 700 c 987 g 504 t 1831 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGCUAG- --AAAGGGCG CACGGUGGAU 121 G|CCUUGG|C ACUAGG|AG| CC-GAUGAAG GA|CGGG(GC AA-AC-)G|- CCG-AAACGC 181 UCCGGG|-GA GCU(G-UA-A GCA-)AGCGU UG-AUC-CGG AGAUG|UCCG AAUGGG(GGA 241 A)CCC|ACUG UCC-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --guaaug)- GGGCAGU-AU CC-AUGCCU( 481 GA-AUCCA-- UA)GGG-CAU -G-G--AGG- GcacAC|CC- GGGGAACU|G A(AACA)UCU 541 UAGUA-CCCG GAGGAGAAGA AAGC(-AAAC --)GCGAU|U CC-CUGAGUA GC(GGCGA)G 601 CGA-A-ACGG GA-ACA-GCC CAAAccaaga -gg------- -----(cgug -)-------- 661 ----ccucuu gggguuguag gaccgcucau ug-------- ---------- ---------- 721 ----ugggag ugagaaagga acg-gggu-a gacGAAccgg u-c(u-ggaa c)g-gccggc 781 |c(aga)gaA GG(UGACAGC )CCUGU-Agu c-gaaacuuc guucccuccc ---------- 841 ---------- ----gagcgg auccu---GA GUACGGCGGG A(CACGGG-A AA)UCCCGUC 901 GGAAGCA-GG G-AG(GACCA U)CU-CCC-A AGGCUAA--- -AUACUCCCU AGUGACCGAU 961 AGUG-CAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-GA GAACCUGAAA CCGU-GUGCC UACAA-G-UA GUCAGAGCGC --g------- 1081 --------(- ---uuca--) ---------- -----u-GCG UGAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UGAC-GAUG- GCGUGC-GAG GUUAAgcc-( -gaaga)-gg 1201 c-GGAGCCGC AGC(GAAA-) GCGAGUCU(G AA-CA)GGGC Ga-------- ---------- 1261 ---------- ------a-aa G-UACGUCGU CGUC-GACCC GAAAC-CAG- GUGA-UCUAC 1321 CCAUGUC|CA GGGUGAAGGC CGGG(UAAC) AC-CGGCUGG AGGCCCGAAC C-CACGCAC( 1381 -GUUGAAAA) GUGCG|GGG- AUGAG-GUGU GGGUAGGGGU (-GAAAU)GC CAAUCGAACU 1441 UGGAGAUAGC UGGUUCUCCC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCG GGaug--ga| 1501 -gag|UGUUG G|AGGUAG|A GC-ACUGA-U UGGGCUA-GG |-GGCCC(uc auc)GGGUUA 1561 CCGAACCCAG -UCAAACUCC GAA-UG-|CC A-A-CGa--- cuua----u| gCC-CGGGAG 1621 UCAGAC--UG C-GAGU(GAU AAG)AUCCGU -GGUC-GAGA GGG(-AAACA G-)CCCAGAU 1681 CGCCAGCUAA G-GC|CCCA- AAGUG-CACG -U-UCA-GUG ------GAAA AGGAUGUG-G 1741 AGUUGCAAA- GACAACCAGG AUGUUGGC(U UAGAAGCA)G CCAC-CAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CGA GU-GAC-UC- -UGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACGUG-C|C| GCCGAAGCU| GCGG|gauga cc-----(gu u--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --ggucauc- GG-UAGGGGA G|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCGU-U 2341 GAAGCCA-G- A-CC(-GGAA -)GGA--CUG GUGG|AGCGC U-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGAAAA CAGAGG(UGA GAAU)CCUCU G|CGCC-GAA AGCCUAAGGG 2461 UUCCUG-AGG AAGG-(UUCG U)CC|G-CUC AGGGUUAGU| CGG|G-ACCU AAGCCGAGGC 2521 C(GAAA)-G- GCGU-AGGUG AUGG-ACAAC AGG-(UU-GA GAUU)C-CUG U|AC|ca-c- 2581 cuccuu-ccc --guu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---ugagcga u------ggg g--gga-cgc aggaggaua- gggc-ga|gc a-ggc(ggc- 2761 -uggaa-ga- --)gc-cugu -|ccaa---- ---------- ---gccg-ca aggc------ 2821 --ugauc-cg uagg(ca-aa -u-)cc|g-- cggauuguaa ---------- ggcc-aagcg 2881 gug-augg|c ga-|------ -------cgg a(-guca--) -uccg----- ------gaag 2941 --ucccc-ga uuuc-aca-| cugccaagaa a-agccuc-u a-gcga---- ------gg-g 3001 -aagag--gu g|c|CCGUAC CGCAAACC(G ACACA)GG|U AG-GCGAGG- A-(GAGAA)U 3061 CCUAAGGCGC ||GCGGGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCUCGU--- ---------- -----uuggg 3181 u(-gaaga)g cccga----- ---------- --ACGAG-C| C(GCA)GACA AAAGGCC-CA 3241 AG|CGACU-- ---GU(UUAU CAAAA)ACAC AGGUCUCUG| CGAAGUC(GU AA------)G 3301 GCGACGU-AU AGGGGCUGA- CACCUGCCCG GU|GCUG-GA A-GGUUAAGG GGAGCGCUUA 3361 GC-------- (G-GAA)--- --------GC GA-AGGUGCG AACCGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGUGUAAC GA-CUUGGGC GCUGUCUCAA CGAGAGACCC 3541 G|GUGAAAUU |AUACUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCGUGG|A GCU-UUACUG C|AGCCUGAU AUG|GAAUUU UGGUGUCGCU UGUACAGGAU 3661 AGGUGGGAGC CUGGGAAG-- CCGGAGC(GC CA)GCUUCGG UGGAGGCGGC -G-GUGGGAU 3721 ACCACC|CUG G-CGAUAUUG AAA-UUCUAA -CCCGCA--- -CCCC(--UU -AGC)-GGGG 3781 UGGGA-GACA GUGUCAGGCG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(CAA-AAGG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(U UGGAAA)UCA UUCGGA-GA| 3901 GU(G|CAAAG )GCACAAGGG AGCUUGACUG CGAGAC(GGA CAG)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|CGGG|G AUAACAG|GC UGA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-CAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACG CACCGCUGGU GUACCAGU|U GUCCC(GC-C A-)GGGGCA- CCGCUGGGUA 4381 GCU-AUGUGC GGACGGGAUA AGCGCU(GAA AGCAUCUA)A GCGUGAAGCC CCCCUC|AAG 4441 AUGAGAUUUC C|CA|CCGCG -(-UCA--)- GGCGG--GU- AAGA|-UC|C CUCG-(AAGA 4501 UG-A)CGAGG -UCGAUAG|G UCCG|AGGUG -GAAGCGUG- -(GCGA-)-- CACGU|GG-A 4561 GCUG|A|CGG AUACUAAUC- GAUCGA-GG| GCUUAA-CCU A-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS B.stearo.2 4759 bp RNA RNA 11-JAN-191 DEFINITION Bacillus stearothermophilus. ACCESSION No information KEYWORDS No information. SOURCE Bacillus stearothermophilus. ORGANISM Bacillus stearothermophilus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: S43424 LOCUS S113017 2928 bp DNA NLM 04-NOV-1992 DEFINITION 23S ribosomal RNA [Bacillus stearothermophilus, NCDO 1768, Genomic, 2928 nt] ACCESSION S43424 KEYWORDS . SOURCE Bacillus stearothermophilus NCDO 1768 ORGANISM Bacillus stearothermophilus Unclassified. REFERENCE 1 (bases 1 to 2928) AUTHORS Ash,C. and Collins,M.D. TITLE Comparative analysis of 23S ribosomal RNA gene sequences of Bacillus anthracis and emetic Bacillus cereus determined by PCR-direct sequencing. JOURNAL FEMS Microbiol. Lett. 73, 75-80 (1992) STANDARD full automatic COMMENT This entry incorporates information provided by the National Library of Medicine's GenInfo Backbone as NCBI gibbsq 113017. This sequence comes from Fig. 2. FEATURES Location/Qualifiers rRNA 1..2928 /note="Description: 23S ribosomal RNA" BASE COUNT 737 a 700 c 987 g 504 t ORIGIN BASE COUNT 737 a 700 c 987 g 504 t 1831 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGCUAG- --AAAGGGCG CACGGUGGAU 121 G|CCUUGG|C ACUAGG|AG| CC-GAUGAAG GA|CGGG(GC AA-AC-)G|- CCG-AAACGC 181 UCCGGG|-GA GCU(G-UA-A GCA-)AGCGU UG-AUC-CGG AGAUG|UCCG AAUGGG(GGA 241 A)CCC|ACUG UCC-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --guaaug)- GGGCAGU-AU CC-AUGCCU( 481 GA-AUCCA-- UA)GGG-CAU -G-G--AGG- GCACAC|CC- GGGGAACU|G A(AACA)UCU 541 UAGUA-CCCG GAGGAGAAGA AAGC(-AAAC --)GCGAU|U CC-CUGAGUA GC(GGCGA)G 601 CGA-A-ACGG GA-ACA-GCC CAAAccaaga -gg------- -----(cgug -)-------- 661 ----ccucuu gggguuguag gaccgcucau ug-------- ---------- ---------- 721 ----ugggag ugagaaagga acg-gggu-a gacGAAccgg u-c(u-ggaa c)g-gccggc 781 |c(aga)gaA GG(UGACAGC )CCUGU-Agu c-gaaacuuc guucccuccc ---------- 841 ---------- ----gagcgg auccu---GA GUACGGCGGG A(CACGGG-A AA)UCCCGUC 901 GGAAGCA-GG G-AG(GACCA U)CU-CCC-A AGGCUAA--- -AUACUCCCU AGUGACCGAU 961 AGUG-CAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-GA GAACCUGAAA CCGU-GUGCC UACAA-G-UA GUCAGAGCGC --g------- 1081 --------(- ---uuca--) ---------- -----u-gcG UGAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UGAC-GAUG- GCGUGC-GAG GUUAAGCC-( -gaaga)-GG 1201 C-GGAGCCGC AGC(GAAA-) GCGAGUCU(G AA-CA)GGGC GA-------- ---------- 1261 ---------- ------a-aa G-UACGUCGU CGUC-GACCC GAAAC-CAG- GUGA-UCUAC 1321 CCAUGUC|CA GGGUGAAGGC CGGG(UAAC) AC-CGGCUGG AGGCCCGAAC C-CACGCAC( 1381 -GUUGAAAA) GUGCG|GGG- AUGAG-GUGU GGGUAGGGGU (-GAAAU)GC CAAUCGAACU 1441 UGGAGAUAGC UGGUUCUCCC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCG GGAUG--ga| 1501 -gag|UGUUG G|AGGUAG|A GC-ACUGA-U UGGGCUA-GG |-GGCCC(uc auc)GGGUUA 1561 CCGAACCCAG -UCAAACUCC GAA-UG-|CC A-A-CGa--- cuua----u| gcc-cGGGAG 1621 UCAGAC--UG C-GAGU(GAU AAG)AUCCGU -GGUC-GAGA GGG(-AAACA G-)CCCAGAU 1681 CGCCAGCUAA G-GC|CCCA- AAGUG-CACG -U-UCA-GUG ------GAAA AGGAUGUG-G 1741 AGUUGCAAA- GACAACCAGG AUGUUGGC(U UAGAAGCA)G CCAC-CAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CGA GU-GAC-UC- -UGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACGUG-C|C| GCCGAAGCU| GCGG|gauga cc-----(gu u--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --ggucauc- GG-UAGGGGA G|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCGU-U 2341 GAAGCCA-G- A-CC(-GGAA -)GGA--CUG GUGG|AGCGC U-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGAAAA CAGAGG(UGA GAAU)CCUCU G|CGCC-GAA AGCCUAAGGG 2461 UUCCUG-AGG AAGG-(UUCG U)CC|G-CUC AGGGUUAGU| CGG|G-ACCU AAGCCGAGGC 2521 C(GAAA)-G- GCGU-AGGUG AUGG-ACAAC AGG-(UU-GA GAUU)C-CUG U|AC|ca-c- 2581 cuccuu-ccc --guu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---ugagcga u------ggg g--gga-cgc aggaggaua- gggc-ga|gc a-ggc(ggc- 2761 -uggaa-ga- --)gc-cugu -|ccaa---- ---------- ---gccg-ca aggc------ 2821 --ugauc-cg uagg(ca-aa -u-)cc|g-- cggauuguaa ---------- ggcc-aagcg 2881 gug-augg|c ga-|------ -------cgg a(-guca--) -uccg----- ------gaag 2941 --ucccc-ga uuuc-aca-| cugccaagaa a-agccuc-u a-gcga---- ------gg-g 3001 -aagag--gu g|c|CCGUAC CGCAAACC(G ACACA)GG|U AG-GCGAGG- A-(GAGAA)U 3061 CCUAAGGCGC ||GCGGGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCUCGU--- ---------- -----uuggg 3181 u(-gaaga)g cccga----- ---------- --ACGAG-C| C(GCA)GACA AAAGGCC-CA 3241 AG|CGACU-- ---GU(UUAU CAAAA)ACAC AGGUCUCUG| CGAAGUC(GU AA------)G 3301 GCGACGU-AU AGGGGCUGA- CACCUGCCCG GU|GCUG-GA A-GGUUAAGG GGAGCGCUUA 3361 GC-------- (G-GAA)--- --------GC GA-AGGUGCG AACCGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGUGUAAC GA-CUUGGGC GCUGUCUCAA CGAGAGACCC 3541 G|GUGAAAUU |AUACUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCGUGG|A GCU-UUACUG C|AGCCUGAU AUG|GAAUUU UGGUGUCGCU UGUACAGGAU 3661 AGGUGGGAGC CUGGGAAG-- CCGGAGC(GC CA)GCUUCGG UGGAGGCGGC -G-GUGGGAU 3721 ACCACC|CUG G-CGAUAUUG AAA-UUCUAA -CCCGCA--- -CCCC(--UU -AGC)-GGGG 3781 UGGGA-GACA GUGUCAGGCG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(CAA-AAGG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(U UGGAAA)UCA UUCGGA-GA| 3901 GU(G|CAAAG )GCACAAGGG AGCUUGACUG CGAGAC(GGA CAG)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|CGGG|G AUAACAG|GC UGA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-CAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACG CACCGCUGGU GUACCAGU|U GUCCC(GC-C A-)GGGGCA- CCGCUGGGUA 4381 GCU-AUGUGC GGACGGGAUA AGCGCU(GAA AGCAUCUA)A GCGUGAAGCC CCCCUC|AAG 4441 AUGAGAUUUC C|CA|CCGCg -(-UCA--)- GGCGG--GU- AAGA|-UC|C CUCG-(AAGA 4501 UG-A)CGAGG -UCGAUAG|G UCCG|AGGUG -GAAGCGUG- -(GCGA-)-- CACGU|GG-A 4561 GCUG|A|CGG AUACUAAUC- GAUCGA-GG| GCUUAA-CCU A-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS B.lichenif 4759 bp RNA RNA 11-JAN-191 DEFINITION Bacillus licheniformis. ACCESSION No information KEYWORDS No information. SOURCE Bacillus licheniformis. ORGANISM Bacillus licheniformis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X68433 ID BL23SRNA standard; DNA; PRO; 2932 BP. XX AC X68433; XX DT 29-MAR-1993 (Rel. 35, Created) DT 29-MAR-1993 (Rel. 35, Last updated, Version 2) XX DE B.licheniformis gene for 23S rRNA XX KW 23S ribosomal RNA. XX OS Bacillus licheniformis OC Prokaryota; Bacteria; Firmicutes; Endospore-forming rods and cocci; OC Bacillaceae; Bacillus. XX RN [1] RP 1-2932 RA Ludwig W.; RT ; RL Submitted (08-SEP-1992) on tape to the EMBL Data Library by: RL W. Ludwig, Lehrst. fuer Mikrobiologie TU Muenchen, Arcisstr. 21, RL 8000 Muenchen 2, FRG XX RN [3] RP 1-2932 RA Ludwig W., Kirchof G., Klugbauer N., Weizenegger M., Betzl D., RA Ehrmann M., Hertel C., Jilg S., Tatzel R., Zitzelsberger H., RA Liebl S., Hochberger M., Shah J., Lane D., Wallnoef P.R.; RT "Complete 23S ribosomal RNA sequences of Gram-positive Bacteria RT with a low DNA G+C content"; RL Syst. Appl. Microbiol. 15:487-501(1992). XX CC *source: strain=DSM 13; XX FH Key Location/Qualifiers FH FT rRNA 1..2932 FT /gene="23S rRNA" XX SQ Sequence 2932 BP; 784 A; 657 C; 918 G; 573 T; 0 other; BASE COUNT 784 a 657 c 918 g 573 t 1827 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGUUAG- --AAAGGGCG CACGGUGGAU 121 G|CCUUGG|C ACUAGG|AG| CC-GAUGAAG GA|CGGG(AC GA-AC-)A|- CCG-AUAUGC 181 UUCGGG|-GA GCU(G-UA-A GCA-)AGCUU UG-AUC-CGG AGAUU|UCCG AAUGGG(GAA 241 A)CCC|ACUG CUC-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --guaaug)- GAGCAGU-AU CC-AUAUCU( 481 GA-AUUCA-- UA)GGA-UAU -GAG--AAG- GcagAC|CC- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCG GAGGAAGAGA AAGC(-AAAU --)GCGAU|U CC-CUGAGUA GC(GGCGA)G 601 CAA-A-ACGG GA-ACA-GCC CAAAccaaga -gg------- -----(cuug -)-------- 661 ----ccucuu gggguuguag gacacucugu ---------- ---------- ---------- 721 ----acggag uuacgaaaga acg-aggu-a gauGAAgagg u-c(u-ggaa a)g-gcccgc 781 |c(aua)ggA GG(UAACAGC )CCUGU-Agu c-aaaacuuc guucucuccu ---------- 841 ---------- ----gagugg auccu---GA GUACGGCGGA A(CACGUG-A AA)UUCCGUC 901 GGAAUCC-GG G-AG(GACCA U)CU-CCC-A AGGCUAA--- -AUACUCCCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-GA GAUCCUGAAA CCGU-GUGCC UACAA-G-UA GUCAGAGCCC --G------- 1081 --------(- ---uuaa--) ---------- -----C-GGG UGAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUC- CCGUGC-AAG GUUAAGUuu( -gaaa-)agA 1201 C-GGAGCCGC AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC GC-------- ---------- 1261 ---------- -----au-ga G-UACGUGGU CGUA-GACCC GAAAC-CAG- GUGA-UCUAC 1321 CCAUGUC|CA GGGUGAAGUU CAGG(UAAC) AC-UGAAUGG AGGCCCGAAC C-CACGCAC( 1381 -GUUGAAAA) GUGCG|GGG- AUGAG-GUGU GGGUAGGGGU (-GAAAU)GC CAAUCGAACC 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCA AGgu---aa| 1501 -gag|UCUUG G|AGGUAG|A GC-ACUGA-U UGGACUA-GG |-GGCCC(cu acc)GGGUUA 1561 CCGAAUUCAG -UCAAACUCC GAA-UG-|CC Aaa-g-a--- cuua----u| ccu-ugggAG 1621 UCAGAC--UG C-GAGU(GAU AAG)AUCCGU -AGUC-GAAA GGG(-AAACA G-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAGUA-UACG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 AGUUGCUUA- GACAACCAGG AUGUUGGC(U UAGAAGCA)G CCAC-CAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CGA GU-GAC-UC- -UGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACGUA-U|C| ACCGAAGCU| GCGG|acugu uc-----(uu gc-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --gaacagu- GG-UAGGAGA G|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCUG-U 2341 GAAGCGA-G- A-CC(-GGAA -)GGA--CUC GUGG|AGCGC U-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGA-AA GAGGGG(UGA GAAU)CCCCU C|CACC-GAA UGCCUAAGGU 2461 UUCCUG-AGG AAGG-(CUCG U)CC|G-CUC AGGGUUAGU| CGG|G-ACCU AAGCCGAGGC 2521 C(GAAA)-G- GCGU-AGGCG AUGG-ACAAC AGG-(UU-GA UAUU)C-CUG U|AC|ca-c- 2581 cuccuc-acc --auu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---ugagcaa u------ggg g--gga-cgc aggaggaua- gggu-aa|gc g-cgg(uau- 2761 -uggau-au- --)cc-gcgu -|ccaa---- ---------- ---gcag-uu aggc------ 2821 --uggga-aa uagg(ca-aa -u-)cc|g-- uuucccguaa ---------- ggcu-gagcu 2881 gug-augg|c ga-|------ -------gcg a(aauauag) -uagc----- ------gaag 2941 --uuccu-ga uucc-aca-| cugccaagaa a-agccuc-u a-gcga---- ------gg-u 3001 -gagag--gu g|c|CCGUAC CGCAAACC(G ACACA)GG|U AG-GCGAGG- A-(GAGAA)U 3061 CCUAAGGUGA ||UCGAGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |gcucug--- ---------- ----uuaggg 3181 u(-gcaa-)g cccgag---- ---------- ---agag-C| C(GCA)GUGA AUAGGCC-CA 3241 GG|CGACU-- ---GU(UUAG CAAAA)ACAC AGGUCUCUG| CGAAGCC(GU AA------)G 3301 GCGAAGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGCGCUUA 3361 GC-------- (G-UAA)--- --------GC GA-AGGUGCG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGCAAC GA-UCUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUU |AUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCGUGG|A GCU-UUACUG C|AGCCUGAU AUU|GAAUGU UGGUACAGCU UGUACAGGAU 3661 AGGUAGGAGC CUUGGAAA-- CCGGAGC(GC CA)GCUUCGG UGGAGGCAUC -G-GUGGGAU 3721 ACUACC|CUG G-CUGUAUUG ACC-UUCUAA -CCCGCU--- -GCCC(--UU -AUC)-GGGC 3781 AGGGA-GACA GUGUCAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAGG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(U UGGAAA)UCA UUCGCA-GA| 3901 GU(G|UAAAG )GCACAAGGG AGCUUGACUG CGAGAC(CUA CAA)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(Gc UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-CAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACG CACCGCUGGU GUACCAGU|U GUUCU(GC-C A-)AGGGCA- UCGCUGGGUA 4381 GCU-AUGUGC GGACGGGAUA AGUGCU(GAA AGCAUCUA)A GCAUGAAGCC CCCCUC|AAG 4441 AUGAGAUUUC C|CA|UUCCU -(-aua--)- AGGAA--GU- AAGA|-UC|C CUGA-(AAGA 4501 UG-A)UCAGG -UUGAUAG|G UCUG|AGGUG -GAAGUGUG- -(GCGA-)-- CACAU|GG-A 4561 GCUG|A|CAG AUACUAAUC- GAUCGA-GG| ACUUAA-CCU A-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS S.epidermi 4759 bp RNA RNA 11-JAN-191 DEFINITION Staphylococcus epidermidis. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus epidermidis. ORGANISM Staphylococcus epidermidis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: Y15751 LOCUS SEY15751 907 bp RNA BCT 08-DEC-1997 DEFINITION Staphylococcus epidermidis 23S rRNA gene, strain DSM 20044 T. ACCESSION Y15751 NID g2673874 KEYWORDS 23S ribosomal RNA; 23S rRNA gene. SOURCE Staphylococcus epidermidis. ORGANISM Staphylococcus epidermidis Eubacteria; Firmicutes; Low G+C gram-positive bacteria; Bacillaceae; Staphylococcus. REFERENCE 1 (bases 1 to 907) AUTHORS Probst,A.J., Hertel,C., Richter,L., Wassill,L., Ludwig,W. and Hammes,W.P. TITLE Description of Staphylococcus condimenti sp. nov., a new species isolated from soy sauce mash. Description of Staphylococcus carnosus subsp. utilis subsp. nov., a new subspecies of Staphylococcus carnosus Schleifer and Fischer 1982 JOURNAL Unpublished REFERENCE 2 (bases 1 to 907) AUTHORS Ludwig,W. TITLE Direct Submission JOURNAL Submitted (01-DEC-1997) W. Ludwig, Lehrstuhl fuer Mikrobiologie, Technische Universitaet Muenchen, Munich, FRG FEATURES Location/Qualifiers source 1..907 /organism="Staphylococcus epidermidis" /strain="DSM 20044 T" /db_xref="taxon:1282" rRNA 1..907 /gene="23S rRNA" /product="23S ribosomal RNA" gene 1..907 /gene="23S rRNA" BASE COUNT 247 a 186 c 277 g 197 t ORIGIN BASE COUNT 247 a 186 c 277 g 197 t 3852 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~-~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 -~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (-~~~~~)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~-~ ~~~~~~~~~~ |-~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~AGCUAA G-GU|CCCA- AAAUA-UAUG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 CGUUGCCCA- GACAACUAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUA GU-----CGA GU-GAC-AC- -UGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACAUA-U|U| ACCGAAGCU| GUGG|auugu cc-----(uu u--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --ggacaau- GG-UAGGAGA G|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCGU-C 2341 GAAGCAU-G- A-UC(-GCAA -)GGA--CAU GUGG|AGCGC U-UAGAAGUG AGAAUGC-CG 2401 GU|GUG-AGU A--GCGAA-A GACGGG(UGA GAAU)CCCGU C|CACC-GAU UGACUAAGGU 2461 UUCCAG-AGG AAGG-(CUCG U)CC|G-CUC UGGGUUAGU| CGG|G-UCCU AAGCUGAGGC 2521 C(GACA)-G- GCGU-AGGCG AUGG--UAAC AGG-(UU-G- UAUU)C-CUG U|AC|ca-c- 2581 cu-a-g-uau c-guu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 --uuaaucga u------ggg g--gga-cgc aguaggaua- ggcg-aa|g- g-ugc(ugu- 2761 -uggag--u- --)gc-acgu -|ucaa---- ---------- ---gcag-ua aggc------ 2821 --ugagu-gu uagg(ca-aa -u-)cc|g-- gcacucaua- ---------a ggcu-gagcu 2881 gug-augg|g ga-|------ ----gaggaa a(--uug--) uuuccuc--- ------gag- 2941 --ucguu-ga uuuc-aca-| cugccgagaa a-agccuc-u a-gaua---- ------ga-u 3001 -aacag--gu g|c|CCGUAC CGCAAACC(G ACACA)GG|U AG-UCAAGA- U-(GAGAA)U 3061 UCUAAGGUGA ||GCGAGCGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |gcucuu--- ---------- -----uaggg 3181 u(-ucac-)g cccag----- ---------- --AAGAG-C| C(GCA)GUGA AUAGGCC-CA 3241 AG|CGACU-- ---GU(UUAU CAAAA)ACAC AGGUCUCUG| CUAAACC(GU AA------)G 3301 GUGAUGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGUGGUUA 3361 GC-------- (U-UCU)--- --------GC GA-AGCUACG AAUCGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGU~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS S.aureus.1 4759 bp RNA RNA 11-JAN-191 DEFINITION Staphylococcus aureus. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus aureus. ORGANISM Staphylococcus aureus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X68425 ID SA23SRRN standard; DNA; PRO; 2923 BP. XX AC X68425; XX DT 29-MAR-1993 (Rel. 35, Created) DT 29-MAR-1993 (Rel. 35, Last updated, Version 2) XX DE S.aureus gene for 23S rRNA XX KW 23S ribosomal RNA. XX OS Staphylococcus aureus OC Prokaryota; Bacteria; Firmicutes; Gram-positive cocci; OC Micrococcaceae. XX RN [1] RP 1-2923 RA Ludwig W.; RT ; RL Submitted (08-SEP-1992) on tape to the EMBL Data Library by: RL W. Ludwig, Lehrst. fuer Mikrobiologie TU Muenchen, Arcisstr. 21, RL 8000 Muenchen 2, FRG XX RN [2] RP 1-2923 RA Ludwig W., Kirchof G., Klugbauer N., Weizenegger M., Betzl D., RA Ehrmann M., Hertel C., Jilg S., Tatzel R., Zitzelsberger H., RA Liebl S., Hochberger M., Shah J., Lane D., Wallnoef P.R.; RT "Complete 23S ribosomal RNA sequences of Gram-positive Bacteria RT with a low DNA G+C content"; RL Syst. Appl. Microbiol. 15:487-501(1992). XX CC *source: strain=ATCC 12600; XX FH Key Location/Qualifiers FH FT rRNA 1..2923 FT /product="23S ribosomal RNA" XX SQ Sequence 2923 BP; 808 A; 597 C; 865 G; 653 T; 0 other; BASE COUNT 808 a 597 c 865 g 653 t 1836 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GA UUAAGUUAU- --UAAGGGCG CACGGUGGAU 121 G|CCUUGG|C ACUAGA|AG| CC-GAUGAAG GA|CGUU(AC UA-AC-)G|- ACG-AUAUGC 181 UUUGGG|-GA GCU(G-UA-A GUA-)AGCUU UG-AUC-CAG AGAUU|UCCG AAUGGG(GAA 241 A)CCC|AGCA UGA-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --guuaug)- UCAUGUU-AU CG-AUAUGU( 481 GA-AUACA-- UA)GCA-UAU -CAG--AAG- GcacAC|CC- GGAGAACU|G A(AACA)UCU 541 UAGUA-CCCG GAGGAAGAGA AAGA(-AAAU --)UCGAU|U CC-CUUAGUA GC(GGCGA)G 601 CGA-AAC-GG GA-AGA-GCC CAAAccaaca -ag------- -----(cuug -)-------- 661 ----cuuguu gggguuguag gacacucuau ac-------- ---------- ---------- 721 -------gga guuacaaagg acgacauu-a gacgaau-ca u-c(u-ggaa a)g-augaau 781 |c(aaa)gaA GG(UAAUAAU )CCUGU-Agu c-gaaaaugu ugucuc-ucu u--------- 841 ---------- ----gagugg auccu---GA GUACGACGGA G(CACGUG-A AA)UUCCGUC 901 GGAAUCU-GG G-AG(GACCA U)CU-CCU-A AGGCUAA--- -AUACUCUCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCGU-GUGCU UACAA-G-UA GUCAGAGCCC --g------- 1081 --------(- ---uuaa--) ---------- -----u-GGG UGAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUU- UGAUGC-AAG GUUAAGCa-( -guaaa)-uG 1201 U-GGAGCCGU AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC GU-------- ---------- 1261 ---------- ------u-ua G-UAUUUGGU CGUA-GACCC GAAAC-CAG- GUGA-UCUAC 1321 CCUUGGU|CA GGUUGAAGUU CAGG(UAAC) AC-UGAAUGG AGGACCGAAC C-GACUUAC( 1381 -GUUGAAAA) GUGAG|CGG- AUGAA-CUGA GGGUAGCGGA (-GAAAU)UC CAAUCGAACC 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCA AGUga---u| 1501 -gau|UAUUG G|AGGUAG|A GC-ACUGU-U UGGACGA-GG |-GGCCC(cu cuc)GGGUUA 1561 CCGAAUUCAG -ACAAACUCC GAA-UG-|CC A-A-UUA--- auuu----a| acu-uggGAG 1621 UCAGAA--CA U-GGGU(GAU AAG)GUCCGU -GUUC-GAAA GGG(-AAACA G-)CCCAGAC 1681 CACCAGCUAA G-GU|CCCA- AAAUA-UAUG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 CGUUGCCCA- GACAACUAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUA GU-----CGA GU-GAC-AC- -UGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACAUA-U|U| ACCGAAGCU| GUGG|auugu cc-----(uu u--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --ggacaau- GG-UAGGAGA G|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCGU-U 2341 GAAGCAU-G- A-UC(-GUAA -)GGA--CAU GUGG|AGCGC U-UAGAAGUG AGAAUGC-CG 2401 GU|GUG-AGU A--GCGAA-A GACGGG(UGA GAAU)CCCGU C|CACC-GAU UGACUAAGGU 2461 UUCCAG-AGG AAGG-(CUCG U)CC|G-CUC UGGGUUAGU| CGG|G-UCCU AAGCUGAGGC 2521 C(GACA)-G- GCGU-AGGCG AUGG-AUAAC AGG-(UU-GA UAUU)C-CUG U|AC|ca-c- 2581 cu-a-u-aau c-guu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 --uuaaucga u------ggg g--gga-cgc aguaggaua- ggcg-aa|gc g-ugc(gau- 2761 -uggau--u- --)gc-acgu -|cuaa---- ---------- ---gcag-ua aggc------ 2821 --ugagu-au uagg(ca-aa -u-)cc|g-- guacucguua ---------a ggcu-gagcu 2881 gug-augg|g ga-|------ ----gaagac a(-uug---) ugucuuc--- ------gag- 2941 --ucguu-ga uuuc-aca-| cugccgagaa a-agccuc-u a-gaua---- ------ga-a 3001 -aauag--gu g|C|CCGUAC CGCAAACC(G ACACA)GG|U AG-UCAAGA- U-(GAGAA)U 3061 UCUAAGGUGA ||GCGAGCGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCUCUU--- ---------- -----uaggg 3181 u(-uaac-)g cccag----- ---------- --AAGAG-C| C(GCA)GUGA AUAGGCC-CA 3241 AG|CGACU-- ---GU(UUAU CAAAA)ACAC AGGUCUCUG| CUAAACC(GU AA------)G 3301 GUGAUGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGUGGUUA 3361 GC-------- (U-UCU)--- --------GC GA-AGCUACG AAUCGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGUAAC GA-UUUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUC |AUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCGUGG|A GCU-UUACUG U|AGCCUGAU AUU|GAAAUU CGGCACAGCU UGUACAGGAU 3661 AGGUAGGAGC CUUUGAAA-- CGUGAGC(GC UA)GCUUACG UGGAGGCGCU -G-GUGGGAU 3721 ACUACC|CUA G-CUGUGUUG GCU-UUCUAA -CCCGCA--- -CCAC(--UU -AUC)-GUGG 3781 UGGGA-GACA GUGUCAGGCG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAGG 3841 UAAC)GGAGG C|G|C|UCAA AGGUUCCC|U CAGAAUGG(U UGGAAA)UCA UUCAUA-GA| 3901 GU(G|UAAAG )GCAUAAGGG AGCUUGACUG CGAGAC(CUA CAA)GUCGAG CAGGGUC(GA 3961 AA)GA-CGGA |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UUC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGUG G-G|CG-UAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACA UACCUCUGGU GUACCAGU|U GUCGU(GC-C A-)ACGGCA- UAGCUGGGUA 4381 GCU-AUGUGU GGACGGGAUA AGUGCU(GAA AGCAUCUA)A GCAUGAAGCC CCCCUC|AAG 4441 AUGAGAUUUC C|C-|AAC-- -(-UUCG-)- --GUU--AU- AAGA|-UC|C CUCA-(AAGA 4501 UG-A)UGAGG -UUAAUAG|G UUCG|AGGUG -GAAGCAUG- -(GUGA-)-- CAUGU|GG-A 4561 GCUG|A|CGA AUACUAAUC- GAUCGA-AG| ACUUAA-UCA A-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS S.aureus.2 4759 bp RNA RNA 11-JAN-191 DEFINITION Staphylococcus aureus subsp. rrnA gene. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus aureus subsp. rrnA gene. ORGANISM Staphylococcus aureus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: D12572; D01220 ID SA23SRNA standard; DNA; PRO; 669 BP. XX AC D12572; D01220; XX DT 06-SEP-1992 (Rel. 33, Created) DT 06-SEP-1992 (Rel. 33, Last updated, Version 1) XX DE Staphylococcus aureus rrnA gene for 23S ribosomal RNA. XX KW 23S rRNA. XX OS Staphylococcus aureus OC Prokaryota; Bacteria; Firmicutes; Gram-positive cocci; OC Micrococcaceae. XX RN [1] RP 1-669 RA Hiramatsu K., Yokota T.; RT ; RL Unpublished. XX CC Submmitted (23-Oct-1991) to DDBJ by: Keiichi Hiramatsu Department CC of Bacteriology Juntendo University 2-1-1 Hongo Bunkyo-ku Tokyo CC Japan Phone: 03-3813-3111 x3529 Fax: 03-3814-9300 XX FH Key Location/Qualifiers FH FT rRNA <1..>669 FT /product="23S rRNA" /gene="rrnA" XX SQ Sequence 669 BP; 191 A; 124 C; 196 G; 158 T; 0 other; BASE COUNT 191 a 124 c 196 g 158 t 4090 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~a -ag------- -----(cuug -)-------- 661 ----cuuguu gggguuguag gacacucuau ac-------- ---------- ---------- 721 -------gga guuacaaagg acgacauu-a gacGAAu-ca u-c(u-ggaa a)g-augaau 781 |c(aaa)gaA GG(UAAUAAU )CCUGU-Agu c-gaaaaugu ugucuc-ucu u--------- 841 ---------- ----gagugg auccu---GA GUACGACGGA G(CACGUG-A AA)UUCCGUC 901 GGAAUCU-GG G-AG(GACCA U)CU-CCU-A AGGCUAA--- -AUACUCUCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCGU-GUGCU UACAA-G-UA GUCAGAGCCC --g------- 1081 --------(- ---uuaa--) ---------- -----u-GGG UGAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUU- UGAUGC-AAG GUUAAGCa-( -guaaa)-uG 1201 U-GGAGCCGU AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC GU-------- ---------- 1261 ---------- ------u-ua G-UAUUUGGU CGUA-GACCC GAAAC-CAG- GUGA-UCUAC 1321 CCUUGGU|CA GGUUGAAGUU CAGG(UAAC) AC-UGAAUGG AGGACCGAAC C-GACUUAC( 1381 -GUUGAAAA) GUGAG|CGG- AUGAA-CUGA GGGUAGCGGA (-GAAAU)UC CAAUCGAACC 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCA AGUga---u| 1501 -gau|UAUUG G|AGGUAG|A GC-ACUGU-U UGGACGA-GG |-GGCCC(cu cuc)GGGUUA 1561 CCGAAUUC~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~~ 2581 ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~-~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~)~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~)~ ~~~~|~~~~~ ~(~~~~~~~~ 3841 ~~~~)~~~~~ ~|~|~|~~~~ ~~~~~~~~|~ ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~~~| 3901 ~~(~|~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~(~~ 3961 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~|~~~~~~ ~~~~~~~|~~ 4021 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~|~|~~~ ~~|~~~~|~~ ~~~~~(~~~~ 4141 ~~~~~)~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ |~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~|~~~~~~ 4261 ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~(~~ ~~)~~~~~)~ 4321 ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~(~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS S.aureus.3 4759 bp RNA RNA 11-JAN-191 DEFINITION Staphylococcus aureus. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus aureus. ORGANISM Staphylococcus aureus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: L36472 LOCUS STA5SRR 13214 bp ds-DNA BCT 09-NOV-1994 DEFINITION Staphylococcus aureus lysyl-tRNA sythetase gene, complete cds, transfer RNA (tRNA) genes, 5S ribosomal RNA (5S rRNA) gene, 16S ribosomal RNA (16S rRNA) gene, 23S ribosomal RNA (23S rRNA) gene. ACCESSION L36472 KEYWORDS 16S ribosomal RNA; 23S ribosomal RNA; 5S ribosomal RNA; lysyl-tRNA synthetase; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Gly; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Pro; transfer RNA-Thr; transfer RNA-Val. SOURCE Staphylococcus aureus (clone library: ATCC 12600) DNA. ORGANISM Staphylococcus aureus Prokaryotae; Firmicutes; Firmibacteria; Gram-positive cocci; Micrococcaceae. REFERENCE 1 (bases 1 to 13214) AUTHORS Green,C.J. and Vold,B.S. TITLE An unusual rRNA-tRNA gene organization in Staphylococcus aureus JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 567883 FEATURES Location/Qualifiers source 1..13214 /organism="Staphylococcus aureus" /sequenced_mol="DNA" /clone_lib="ATCC 12600" CDS 176..1663 /note="NCBI gi: 567884" /codon_start=1 /product="lysyl-tRNA synthetase" /translation="MSEEMNDQMLVRRQKLQELYDLGIDPFGSKFDRSGLSSDLKEEW DQYSKEELVEKEADSHVAIAGRLMTKRGKGKAGFAHVQDLAGQIQIYVRKDQVGDDEF DLWKNADLGDIVGVEGVMFKTNTGELSVKAKKFTLLTKSLRPLPDKFHGLQDIEQRYR QRYLDLITNEDSTRTFINRSKIIQEMRNYLNNKGFLEVETPMMHQIAGGAAARPFVTH HNALDATLYMRIAIELHLKRLIVGGLEKVYEIGRVFRNEGVSTRHNPEFTMIELYEAY ADYHDIMDLTESMVRHIANEVLGSAKVQYNGETIDLESAWTRLHIVDAVKEATGVDFY EVKSDEERKALAKEHGIEIKDTMKYGHILNEFFEQKVEETLIQPTFIYGHPTEISPLA KKNPEDPRFTDRFELFIVGREHANRFTELNDPIDQKGRFEAQLVEKAQGNDEAHEMDE DYIEALEYGMPPTGGLGIGIDRLVMLLTDSPSIRDVLLFPYMRQK" rRNA 2221..2335 /gene="5S rRNA" /product="5S ribosomal RNA" tRNA 2348..2423 /gene="tRNA-Val" /anticodon=(pos:2381..2383,aa:Val) /product="transfer RNA-Val" tRNA 2440..2515 /gene="tRNA-Thr" /anticodon=(pos:2473..2475,aa:Thr) /product="transfer RNA-Thr" tRNA 2522..2594 /gene="tRNA-Lys" /product="transfer RNA-Lys" tRNA 2627..2701 /gene="tRNA-Gly" /anticodon=(pos:2659..2661,aa:Gly) /product="transfer RNA-Gly" tRNA 2709..2797 /gene="tRNA-Leu" /anticodon=(pos:2743..2745,aa:Leu) /product="transfer RNA-Leu" tRNA 2803..2879 /gene="tRNA-Arg" /anticodon=(pos:2837..2839,aa:Arg) /product="transfer RNA-Arg" tRNA 2900..2973 /gene="tRNA-Pro" /product="transfer RNA-Pro" tRNA 2997..3072 /gene="tRNA-Ala" rRNA 3194..4748 /gene="16S rRNA" /product="16S ribosomal RNA" tRNA 4841..4917 /gene="tRNA-Ile" /anticodon=(pos:4875..4877,aa:Ile) /product="transfer RNA-Ile" rRNA 5208..8130 /gene="23S rRNA" /product="23S ribosomal RNA" rRNA 8203..8317 /gene="5S rRNA" /product="5S ribosomal RNA" rRNA 8528..10082 /gene="16S rRNA" /product="16S ribosomal RNA" rRNA 10381..13214 /gene="23S rRNA" /product="23S ribosomal RNA" BASE COUNT 3909 a 2509 c 3510 g 3286 t ORIGIN BASE COUNT 778 a 584 c 840 g 632 t 1925 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GA UUAAGUUAU- --UAAGGGCG CACGGUGGAU 121 G|CCUUGG|C ACUAGA|AG| CC-GAUGAAG GA|CGUU(AC UA-AC-)G|- ACG-AUAUGC 181 UUUGGG|-GA GCU(G-UA-A GUA-)AGCUU UG-AUC-CAG AGAUU|UCCG AAUGGG(GAA 241 A)CCC|AGCA UGA-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --guuaug)- UCAUGUU-AU CG-AUAUGU( 481 GA-AUACA-- UA)GCA-UAU -CAG--AAG- GcacAC|CC- GGAGAACU|G A(AACA)UCU 541 UAGUA-CCCG GAGGAAGAGA AAGA(-AAAU --)UCGAU|U CC-CUUAGUA GC(GGCGA)G 601 CGA-AAC-GG GA-AGA-GCC CAAAccaaca -ag------- -----(cuug -)-------- 661 ----cuuguu gggguuguag gacacucuau ac-------- ---------- ---------- 721 -------gga guuacaaagg acgacauu-a gacgaau-ca u-c(u-ggaa a)g-augaau 781 |c(aaa)gaA GG(UAAUAAU )CCUGU-Agu c-gaaaaugu ugucuc-ucu u--------- 841 ---------- ----gagugg auccu---GA GUACGACGGA G(CACGUG-A AA)UUCCGUC 901 GGAAUCU-GG G-AG(GACCA U)CU-CCU-A AGGCUAA--- -AUACUCUCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCGU-GUGCU UACAA-G-UA GUCAGAGCCC --G------- 1081 --------(- ---uuaa--) ---------- -----U-GGG UGAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUU- UGAUGC-AAG GUUAAGCA-( -guaaa)-UG 1201 U-GGAGCCGU AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC GU-------- ---------- 1261 ---------- ------u-ua G-UAUUUGGU CGUA-GACCC GAAAC-CAG- GUGA-UCUAC 1321 CCUUGGU|CA GGUUGAAGUU CAGG(UAAC) AC-UGAAUGG AGGACCGAAC C-GACUUAC( 1381 -GUUGAAAA) GUGAG|CGG- AUGAA-CUGA GGGUAGCGGA (-GAAAU)UC CAAUCGAACC 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCA AGUga---u| 1501 -gau|UAUUG G|AGGUAG|A GC-ACUGU-U UGGACGA-GG |-GGCCC(cu cuc)GGGUUA 1561 CCGAAUUCAG -ACAAACUCC GAA-UG-|cc a-a-uua--- auuu----a| acu-ugggAG 1621 UCAGAA--CA U-GGGU(GAU AAG)GUCCGU -GUUC-GAAA GGG(-AAACA G-)CCCAGAC 1681 CACCAGCUAA G-GU|CCCA- AAAUA-UAUG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 CGUUGCCCA- GACAACUAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUA GU-----CGA GU-GAC-AC- -UGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACAUA-U|U| ACCGAAGCU| GUGG|auugu cc-----(uu u--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --ggacaau- GG-UAGGAGA G|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCGU-U 2341 GAAGCAU-G- A-UC(-GUAA -)GGA--CAU GUGG|AGCGC U-UAGAAGUG AGAAUGC-CG 2401 GU|GUG-AGU A--GCGAA-A GACGGG(UGA GAAU)CCCGU C|CACC-GAU UGACUAAGGU 2461 UUCCAG-AGG AAGG-(CUCG U)CC|G-CUC UGGGUUAGU| CGG|G-UCCU AAGCUGAGGC 2521 C(GACA)-G- GCGU-AGGCG AUGG-AUAAC AGG-(UU-GA UAUU)C-CUG U|ac|ca-c- 2581 cu-a-u-aau c-guu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 --uuaaucga u------ggg g--gga-cgc aguaggaua- ggcg-aa|gc g-ugc(gau- 2761 -uggau--u- --)gc-acgu -|cuaa---- ---------- ---gcag-ua aggc------ 2821 --ugagu-au uagg(ca-aa -u-)cc|g-- guacucguua ---------a ggcu-gagcu 2881 gug-augg|g ga-|------ ----gaagac a(-uug---) ugucuuc--- ------gag- 2941 --ucguu-ga uuuc-aca-| cugccgagaa a-agccuc-u a-gaua---- ------ga-a 3001 -aauag--gu g|c|CCGUAC CGCAAACC(G ACACA)GG|U AG-UCAAGA- U-(GAGAA)U 3061 UCUAAGGUGA ||GCGAGCGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCUCUU--- ---------- -----uaggg 3181 u(-uaac-)g cccag----- ---------- --AAGAG-C| C(GCA)GUGA AUAGGCC-CA 3241 AG|CGACU-- ---GU(UUAU CAAAA)ACAC AGGUCUCUG| CUAAACC(GU AA------)G 3301 GUGAUGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGUGGUUA 3361 GC-------- (U-UCU)--- --------GC GA-AGCUACG AAUCGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGUAAC GA-UUUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUC |AUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCGUGG|A GCU-UUACUG U|AGCCUGAU AUU|GAAAUU CGGCACAGCU UGUACAGGAU 3661 AGGUAGGAGC CUUUGAAA-- CGUGAGC(GC UA)GCUUACG UGGAGGCGCU -G-GUGGGAU 3721 ACUACC|CUA G-CUGUGUUG GCU-UUCUAA -CCCGCA--- -CCAC(--UU -AUC)-GUGG 3781 UGGGA-GACA GUGUCAGGCG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAGG 3841 UAAC)GGAGG C|G|C|UCAA AGGUUCCC|U CAGAAUGG(U UGGAAA)UCA UUCAUA-GA| 3901 GU(G|UAAAG )GCAUAAGGG AGCUUGACUG CGAGAC(CUA CAA)GUCGAG CAGGGUC(GA 3961 AA)GA-CGGA |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UUC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGUG G-G|CG-UAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACA UACCUCUGGU GUACCAGU|U GUCGU(GC-C A-)ACGGCA- UAGCUGGGUA 4381 GCU-AUGUGU GGACGGGAUA AGUGCU(GAA AGCAUCUA)A GCAUGAAGCC CCCCUC|AAG 4441 AUGAGAUUUC C|C-|AAC-- -(-UUCG-)- --GUU--AU- AAGA|-UC|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS S.carnosus 4759 bp RNA RNA 11-JAN-191 DEFINITION Staphylococcus carnosus. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus carnosus. ORGANISM Staphylococcus carnosus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X68419 ID SC23SRRN standard; DNA; PRO; 2924 BP. XX AC X68419; XX DT 20-APR-1993 (Rel. 35, Created) DT 20-APR-1993 (Rel. 35, Last updated, Version 2) XX DE S.carnosus gene for 23S rRNA XX KW 23S ribosomal RNA. XX OS Staphylococcus carnosus OC Prokaryota; Bacteria; Firmicutes; Gram-positive cocci; OC Micrococcaceae. XX RN [1] RP 1-2924 RA Ludwig W.; RT ; RL Submitted (08-SEP-1992) on tape to the EMBL Data Library by: RL W. Ludwig, Lehrst. fuer Mikrobiologie TU Muenchen, Arcisstr. 21, RL 8000 Muenchen 2, FRG XX RN [2] RP 1-2924 RA Ludwig W., Kirchof G., Klugbauer N., Weizenegger M., Betzl D., RA Ehrmann M., Hertel C., Jilg S., Tatzel R., Zitzelsberger H., RA Liebl S., Hochberger M., Shah J., Lane D., Wallnoef P.R.; RT "Complete 23S ribosomal RNA sequences of Gram-positive Bacteria RT with a low DNA G+C content"; RL Syst. Appl. Microbiol. 15:487-501(1992). XX FH Key Location/Qualifiers FH FT source 1..2924 FT /organism="Staphylococcus carnosus" FT /strain="DSM 20501" FT rRNA 1..2924 FT /product="23S ribosomal RNA" XX SQ Sequence 2924 BP; 797 A; 608 C; 877 G; 642 T; 0 other; BASE COUNT 797 a 608 c 877 g 642 t 1835 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GA UUAAGUUAU- --UAAGGGCG CACGGUGGAU 121 G|CCUUGG|C ACUAGA|AG| CU-GAUGAAG GA|CGUU(AC UA-AC-)G|- ACG-AUAUGC 181 UUUGGG|-UA GCU(G-UA-A GUA-)AGCGU UG-AUC-CAG AGAUU|UCCG AAUGGG(GGA 241 A)CCC|AGCA CAA-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --guuaug)- UUGUGUU-AU CG-ACAUGU( 481 GA-AUACA-- UA)GCA-UGU -CUG--AAG- GCAGAC|GU- GGAGAACU|G A(AACA)UCU 541 UAGUA-CCCG CAGGAAGAGA AAGA(-AAAC --)UCGAU|U CC-CUGAGUA GC(GGCGA)G 601 CGA-AAC-GG GA-AGA-GCC CAAAccaaug -ag------- -----(cuug -)-------- 661 ----cucauu gggguuguag gacacucuau au-------- ---------- ---------- 721 -------gga guuacaaaag aaucgauu-a gacgaac-cg uac(u-ggaa a)g-uuggac 781 |c(aga)gaA GG(UAAAAGU )CCUGU-Agu c-gaaaaucg auucucuc-- ---------- 841 ---------- --cugagugg auccu---GA GUACGACGGA G(CACGUG-G AA)UUCCGUC 901 GGAAUCC-GG G-AG(GACCA U)CU-CCC-A AGGCUAA--- -AUACUCUCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G UACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-GA GAACUUGAAA CCGU-GUGCU UACAA-G-UA GUCAGAGCCC --g------- 1081 --------(- ---uuaa--) ---------- -----u-GGG UGAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUC- UGAUGC-AAG GUUAAGCA-( -gcgaa)-UG 1201 C-GGAGCCGC AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC GU-------- ---------- 1261 ---------- ------u-ga G-UAUUUGGU CGUA-GACCC GAAAC-CAG- GUGA-UCUAC 1321 CCUUGGU|CA GGUUGAAGUU CAGG(UAAC) AC-UGAAUGG AGGACCGAAC C-GACUUAC( 1381 -GUUGAAAA) GUGAG|CGG- AUGAA-CUGA GGGUAGCGGA (-GAAAU)UC CAAUCGAACC 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCA AGUGa---u| 1501 -gau|UGUUG G|AGGUAG|A GC-ACUGU-U UGGACGA-GG |-GGCCC(uu cuc)GGGUUA 1561 CCGAAUUCAG -ACAAACUCC GAA-UG-|cc a-a-uca--- auuu----a| acu-ugGGAG 1621 UCAGAA--CG U-GGGU(GAU AAG)GUCCAU -GUUC-GAAA GGG(-AAACA G-)CCCAGAC 1681 CACCAGCUAA G-GU|CCCA- AAAUA-UAUG -U-UAA-GUG ------GCAA AGGAUGUG-G 1741 UAUUGCCCA- GACAACUAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUA GU-----CGA GU-GAC-AC- -UGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACAUA-U|U| ACCGAAGCU| GUGG|acugu cc-----(uu c--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --ggacagu- GG-UAGGAGA G|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCGU-C 2341 GAAGCAU-G- A-UC(-GCAA -)GGA--CAU GUGG|AGCGC U-UAGAAGUG AGAAUGC-CG 2401 GU|GUG-AGU A--GCGAA-A GAUGGG(UGA GAAU)CCCAU C|CACC-GAU UGACUAAGGU 2461 UUCCAG-AGG AAGG-(CUCG U)CC|G-CUC UGGGUUAGU| CGG|G-UCCU AAGCCGAGGC 2521 C(GACA)-G- GCGU-AGGCG AUGG-AUAAC AGG-(UU-GA UAUU)C-CUG U|AC|cg-c- 2581 ca-a-g-gau c-guu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 --uuaagcga u------ggg g--gga-cac aguaggaua- ggcg-aa|gc g-ugc(ugu- 2761 -uggag--u- --)gc-acgu -|ccaa---- ---------- ---gcag-ug agac------ 2821 --ugaau-ag uagg(ca-aa -u-)cc|g-- cuauucuca- ---------a gguc-aagcu 2881 gug-augg|g ga-|------ ----gaggaa a(-caug--) uuuccuc--- ------gag- 2941 --ucguu-ga uuuc-aca-| cugucgagaa a-agccuc-u a-gcua---- ------gu-g 3001 -auuug--gc g|C|CCGUAC CGCAAACC(G ACACA)GG|U AG-UCAAGA- U-(GAGAA)U 3061 UCUAAGGUGA ||GCGAGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |gcucuu--- ---------- -----uaggg 3181 u(-ucac-)g cucug----- ---------- --AAGAG-C| C(GCA)GUGA AUAGGCC-CA 3241 AG|CGACU-- ---GU(UUAU CAAAA)ACAC AGGUCUCUG| CUAAACC(GU AA------)G 3301 GUGAUGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGUGGUUA 3361 GC-------- (U-UCU)--- --------GC GA-AGCUACG AAUCGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGUAAC GA-UUUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUC |AUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCGUGG|A GCU-UUACUG U|AGCCUGAU AUU|GAAAUU CGGCACAGCU UGUACAGGAU 3661 AGGUAGGAGC CUUAGAAA-- CGUGAGC(GC CA)GCUUACG UGGAGGCGUU -G-GUGGGAU 3721 ACUACC|CUA G-CUGUGUUG GAU-UUCUAA -CCCGCG--- -CCAU(--UU -AUC)-AUGG 3781 UGGGA-GACA GUGUCAGGCG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AGUG 3841 UAAC)GGAGG C|G|C|UCAA AGGUUCCC|U CAGAAUGG(U UGGAAA)UCA UUCAUA-GA| 3901 GU(G|UAAAG )GCAUAAGGG AGCUUGACUG CGAGAC(UUA CAA)GUCGAG CAGGGUC(GA 3961 AA)GA-CGGA |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UUC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GUCGUG G-G|CG-CAG 4261 GAAGUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACA UACCUCUGGU GUACCAGU|U GUCGU(GC-C A-)ACGGCA- UAGCUGGGUA 4381 GCU-AUGUAU GGACGGGAUA AGUGCU(GAA AGCAUCUA)A GCAUGAAGCC CCCCUC|AAG 4441 AUGAGACUUC C|C-|AAC-- -(-UUCG-)- --GUU--AU- AAGA|-UC|C CUCA-(AAGA 4501 UG-A)UGAGG -UUAAUAG|G UUCG|GGGUG -GAAGCAUA- -(GCGA-)-- UAUGU|GG-A 4561 GCUG|A|CGA AUACUAAUC- GAUCGA-AG| ACUUAA-UCC A-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS S.piscifer 4759 bp RNA RNA 09-DEC-1997 DEFINITION Staphylococcus piscifermentans. str. SK03 T; 23S ribosomal RNA; 23S rRNA gene. ACCESSION Y15752 KEYWORDS 23S ribosomal RNA; 23S rRNA gene. SOURCE Staphylococcus piscifermentans. str. SK03 T. ORGANISM Staphylococcus piscifermentans. REFERENCE 1 (bases 1 to 2933) AUTHORS Hammes,W.P. Probst,A.J., Hertel,C., Richter,L., Wassill,L., Ludwig,W. and TITLE subspecies of Staphylococcus carnosus Schleifer and Fischer 1982 Description of Staphylococcus condimenti sp. nov., a new species isolated from soy sauce mash. Description of Staphylococcus carnosus subsp. utilis subsp. nov., a new JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2933) AUTHORS Ludwig,W. TITLE Direct Submission JOURNAL Submitted (01-DEC-1997) W. Ludwig, Lehrstuhl fuer Mikrobiologie, Technische Universitaet Muenchen, Munich, FRG STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: Y15752 BASE COUNT 803 a 616 c 876 g 638 t 1826 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GA UUAAGUUAU- --UAAGGGCG CACGGUGGAU 121 G|CCUUGG|C ACUAGA|AG| CU-GAUGAAG GA|CGUU(AC UA-AC-)G|- ACG-AUAUGC 181 UUUGGG|-UA GCU(G-UA-A GUA-)AGCGU UG-AUC-CAG AGAUU|UCCG AAUGGG(GGA 241 A)CCC|AGCA CAA-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --guuaug)- UUGUGUU-AU CG-ACAUGU( 481 GA-AUACA-- UA)GCA-UGU -CCG--AAG- GcagAC|GC- GGAGAACU|G A(AACA)UCU 541 UAGUA-CCCG CAGGAAGAGA AAGA(-AAAC --)UCGAU|U CC-CUGAGUA GC(GGCGA)G 601 CGA-AAC-GG GA-AGA-GCC CAAAccaaug -ag------- -----(cuug -)-------- 661 ----cucauu gggguuguag gacacucuau ac-------- ---------- ---------- 721 -------gga guuacaaaag aauugauu-a gacgaau-cg uac(u-ggaa a)g-ucgaac 781 |c(aga)gaA GG(UAAGAGU )CCUGU-Agu c-gaaaguca auucuc-ucc u--------- 841 ---------- ----gagugg auccu---GA GUACGACGGA G(CACGUG-A AA)UUCCGUC 901 GGAAUCC-GG G-AG(GACCA U)CU-UCC-A AGGCUAA--- -AUACUCUCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G UACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-GA GAACUUGAAA CCGU-GUGCU UACAA-G-UA GUCAGAGCCC --g------- 1081 --------(- ---uuaa--) ---------- -----u-GGG UGAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUC- UGAUGC-AAG GUUAAGCa-( -gcgaa)-uG 1201 C-GGAGCCGC AGC(GAAA-) GCGAGUCU(G AA-CA)GGGC GU-------- ---------- 1261 ---------- ------u-ga G-UAUUUGGU CGUA-GACCC GAAAC-CAG- GUGA-UCUAC 1321 CCUUGGU|CA GGUUGAAGUU CAGG(UAAC) AC-UGAAUGG AGGACCGAAC C-GACUUAC( 1381 -GUUGAAAA) GUGAG|CGG- AUGAA-CUGA GGGUAGCGGA (-GAAAU)UC CAAUCGAACC 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCA AGUga---u| 1501 -gau|UGUUG G|AGGUAG|A GC-ACUGU-U UGGACGA-GG |-GGCCC(cu cuc)GGGUUA 1561 CCGAAUUCAG -ACAAACUCC GAA-UG-|CC A-A-UCA--- auuu----a| acu-uggGAG 1621 UCAGAA--CG U-GGGU(GAU AAG)GUCCAU -GUUC-GAAA GGG(-AAACA G-)CCCAGAC 1681 CACCAGCUAA G-GU|CCCA- AAAUA-UAUG -U-UAA-GUG ------GCAA AGGAUGUG-G 1741 UAUUGCCCA- GACAACUAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUA GU-----CGA GU-GAC-AC- -UGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACAUA-U|U| ACCGAAGCU| GUGG|acugu cc-----(uu c--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --ggacagu- GG-UAGGAGA G|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCGU-C 2341 GAAGCAU-G- A-UC(-GCAA -)GGA--CAU GUGG|AGCGC U-UAGAAGUG AGAAUGC-CG 2401 GU|GUG-AGU A--GCGAA-A GAUGGG(UGA GAAU)CCCAU C|CACC-GAU UGACUAAGGU 2461 UUCCAG-AGG AAGG-(CUCG U)CC|G-CUC UGGGUUAGU| CGG|G-UCCU AAGCCGAGGC 2521 C(GACA)-G- GCGU-AGGCG AUGG-AUAAC AGG-(UU-GA UAUU)C-CUG U|AC|cg-c- 2581 ca-a-u-aau c-guu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 --uuaagcga u------ggg g--gga-cac aguaggaua- ggcg-aa|gc g-ugc(ugu- 2761 -uggag--u- --)gc-acgu -|ccaa---- ---------- ---gcag-ua agac------ 2821 --ugaau-gg uagg(ca-aa -u-)cc|g-- ccauuca-ua ---------a gguc-aagcu 2881 gug-augg|g ga-|------ ----gaggaa a(caug---) uuuccuc--- ------gag- 2941 --ucguu-ga uuuc-aca-| cugucgagaa a-agccuc-u a-gcua---- ------ga-g 3001 -auuug--gc g|C|CCGUAC CGCAAACC(G ACACA)GG|U AG-UCAAGA- U-(GAGAA)U 3061 UCUAAGGUGA ||GCGAGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCUCUU--- ---------- -----uaggg 3181 u(-ucac-)g cucug----- ---------- --AAGAG-C| C(GCA)GUGA AUAGGCC-CA 3241 AG|CGACU-- ---GU(UUAU CAAAA)ACAC AGGUCUCUG| CUAAACC(GU AA------)G 3301 GUGAUGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGUGGUUA 3361 GC-------- (U-UCU)--- --------GC GA-AGCUACG AAUCGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUCUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGUAAC GA-UUUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUC |AUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCGUGG|A GCU-UUACUG U|AGCCUGAU AUU|GAAAUU CGGCACAGCU UGUACAGGAU 3661 AGGUAGGAGC CUUGGAAA-- CGUGAGC(GC CA)GCUUACG UGGAGGCGUU -G-GUGGGAU 3721 ACUACC|CUA G-CUGUGUUG GAU-UUCUAA -CCCGCG--- -CCAU(--UG -AUC)-AUGG 3781 CGGGA-GACA GUGUCAGGCG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AGUG 3841 UAAC)GGAGG C|G|C|UCAA AGGUUCCC|U CAGAAUGG(U UGGAAA)UCA UUCAUA-GA| 3901 GU(G|UAAAG )GCAUAAGGG AGCUUGACUG CGAGAC(CUA CAA)GUCGAG CAGGGUC(GA 3961 AA)GA-CGGA |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UUC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGUG G-G|CG-CAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACA UACCUCUGGU GUACCAGU|U GUCGU(GC-C A-)ACGGCA- UCGCUGGGUA 4381 GCU-AUGUAU GGACGGGAUA AGUGCU(GAA AGCAUCUA)A GCAUGAAGCC CCCCUC|AAG 4441 AUGAGAUUUC C|C-|AAC-- -(-UUCG-)- --GUU--AU- AAGA|-UC|C CUCA-(AAGA 4501 UG-A)UGAGG -UUAAUAG|G UUCG|GGGUG -GAAGCAUA- -(GCGA-)-- UAUGU|GG-A 4561 GCUG|A|CGA AUACUAAUC- GAUCGA-AG| ACUUAA-UCC Aa------|a uuucaag~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS S.condimen 4759 bp RNA RNA 11-JAN-191 DEFINITION Staphylococcus condimenti. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus condimenti. ORGANISM Staphylococcus condimenti. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: Y15755 LOCUS SCY15755 2905 bp RNA BCT 09-DEC-1997 DEFINITION Staphylococcus condimenti 23S rRNA gene, strain F-2 T, DSM 11674 T. ACCESSION Y15755 NID g2673878 KEYWORDS 23S ribosomal RNA; 23S rRNA gene. SOURCE Staphylococcus condimenti. ORGANISM Staphylococcus condimenti Eubacteria; Firmicutes; Low G+C gram-positive bacteria; Bacillaceae; Staphylococcus. REFERENCE 1 (bases 1 to 2905) AUTHORS Probst,A.J., Hertel,C., Richter,L., Wassill,L., Ludwig,W. and Hammes,W.P. TITLE Description of Staphylococcus condimenti sp. nov., a new species isolated from soy sauce mash. Description of Staphylococcus carnosus subsp. utilis subsp. nov., a new subspecies of Staphylococcus carnosus Schleifer and Fischer 1982 JOURNAL Unpublished REFERENCE 2 (bases 1 to 2905) AUTHORS Ludwig,W. TITLE Direct Submission JOURNAL Submitted (01-DEC-1997) W. Ludwig, Lehrstuhl fuer Mikrobiologie, Technische Universitaet Muenchen, Munich, FRG FEATURES Location/Qualifiers source 1..2905 /organism="Staphylococcus condimenti" /strain="F-2 T" /strain="DSM 11674 T" /db_xref="taxon:70255" rRNA 1..2905 /gene="23S rRNA" /product="23S ribosomal RNA" gene 1..2905 /gene="23S rRNA" BASE COUNT 789 a 609 c 876 g 631 t ORIGIN BASE COUNT 789 a 609 c 876 g 631 t 1854 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GA UUAAGUUAU- --UAAGGGCG CACGGUGGAU 121 G|CCUUGG|C ACUAGA|AG| CU-GAUGAAG GA|CGUU(AC UA-AC-)G|- ACG-AUAUGC 181 UUUGGG|-UA GCU(G-UA-A GUA-)AGCGU UG-AUC-CAG AGAUU|UCCG AAUGGG(GGA 241 A)CCC|AGCA CAA-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --guuaug)- UUGUGUU-AU CG-ACAUGU( 481 GA-AUACA-- UA)GCA-UGU -CUG--AAG- GCAGAC|GC- GGAGAACU|G A(AACA)UCU 541 UAGUA-CCCG CAGGAAGAGA AAGA(-AAAC --)UCGAU|U CC-CUGAGUA GC(GGCGA)G 601 CGA-AAC-GG GA-AGA-GCC CAAAccaaug -ag------- -----(cuug -)-------- 661 ----cucauu gggguuguag gacacucugu au-------- ---------- ---------- 721 -------gga guuacaaaag aaucgauu-a gacgaac-cg uac(u-ggaa a)g-uuggac 781 |c(aga)gaA GG(UAAAAGU )CCUGU-Agu c-gaaagucg auucucuc-- ---------- 841 ---------- --cugagugg auccu---GA GUACGACGGA G(CACGUG-G AA)UUCCGUC 901 GGAAUCC-GG G-AG(GACCA U)CU-CCC-A AGGCUAA--- -AUACUCUCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G UACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-GA GAACUUGAAA CCGU-GUGCU UACAA-G-UA GUCAGAGCCC --g------- 1081 --------(- ---uuaa--) ---------- -----u-GGG UGAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUC- UGAUGC-AAG GUUAAGCA-( -gcgaa)-UG 1201 C-GGAGCCGC AGC(GAAA-) GCGAGUCU(G AA-CA)GGGC GU-------- ---------- 1261 ---------- ------u-ga G-UAUUUGGU CGUA-GACCC GAAAC-CAG- GUGA-UCUAC 1321 CCUUGGU|CA GGUUGAAGUU CAGG(UAAC) AC-UGAAUGG AGGACCGAAC C-GACUUAC( 1381 -GUUGAAAA) GUGAG|CGG- AUGAA-CUGA GGGUAGCGGA (-GAAAU)UC CAAUCGAACC 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCA AGUGa---u| 1501 -gau|UGUUG G|AGGUAG|A GC-ACUGU-U UGGACGA-GG |-GGCCC(uu cuc)GGGUUA 1561 CCGAAUUCAG -ACAAACUCC GAA-UG-|cc a-a-uca--- auuu----a| acu-ugGGAG 1621 UCAGAA--CG U-GGGU(GAU AAG)GUCCAU -GUUC-GAAA GGG(-AAACA G-)CCCAGAC 1681 CACCAGCUAA G-GU|CCCA- AAAUA-UAUG -U-UAA-GUG ------GCAA AGGAUGUG-G 1741 UAUUGCCCA- GACAACUAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUA GU-----CGA GU-GAC-AC- -UGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACAUA-U|U| ACCGAAGCU| GUGG|acugu cc-----(uu c--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --ggacagu- GG-UAGGAGA G|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCGU-C 2341 GAAGCAU-G- A-UC(-GCAA -)GGA--CAU GUGG|AGCGC U-UAGAAGUG AGAAUGC-CG 2401 GU|GUG-AGU A--GCGAA-A GAUGGG(UGA GAAU)CCCAU C|CACC-GAU UGACUAAGGU 2461 UUCCAG-AGG AAGG-(CUCG U)CC|G-CUC UGGGUUAGU| CGG|G-UCCU AAGCCGAGGC 2521 C(GACA)-G- GCGU-AGGCG AUGG-AUAAC AGG-(UU-GA UAUU)C-CUG U|AC|cg-c- 2581 ca-a-u-gau c-guu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 --uuaagcga u------ggg g--gga-cac aguaggaua- ggcg-aa|gc g-ugc(ugu- 2761 -uggag--u- --)gc-acgu -|ccaa---- ---------- ---gcag-ua agac------ 2821 --ugaau-gg uagg(ca-aa -u-)cc|g-- ccauucuca- ---------a gguc-aagcu 2881 gug-augg|g ga-|------ ----gaggaa a(-caug--) uuuccuc--- ------gag- 2941 --ucguu-ga uuuc-aca-| cugucgagaa a-agccuc-u a-gcua---- ------ga-g 3001 -auuug--gc g|c|CCGUAC CGCAAACC(G ACACA)GG|U AG-UCAAGA- U-(GAGAA)U 3061 UCUAAGGUGA ||GCGAGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |gcucuu--- ---------- -----uaggg 3181 u(-ucac-)g cucug----- ---------- --AAGAG-C| C(GCA)GUGA AUAGGCC-CA 3241 AG|CGACU-- ---GU(UUAU CAAAA)ACAC AGGUCUCUG| CUAAACC(GU AA------)G 3301 GUGAUGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGUGGUUA 3361 GC-------- (U-UCU)--- --------GC GA-AGCUACG AAUCGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGUAAC GA-UUUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUC |AUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCGUGG|A GCU-UUACUG U|AGCCUGAU AUU|GAAAUU CGGCACAGCU UGUACAGGAU 3661 AGGUAGGAGC CUUAGAAA-- CGUGAGC(GC CA)GCUUACG UGGAGGCGUU -G-GUGGGAU 3721 ACUACC|CUA G-CUGUGUUG GAU-UUCUAA -CCCGCG--- -CCAU(--UG -AUC)-AUGG 3781 CGGGA-GACA GUGUCAGGCG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AGUG 3841 UAAC)GGAGG C|G|C|UCAA AGGUUCCC|U CAGAAUGG(U UGGAAA)UCA UUCAUA-GA| 3901 GU(G|UAAAG )GCAUAAGGG AGCUUGACUG CGAGAC(CUA CAA)GUCGAG CAGGGUC(GA 3961 AA)GA-CGGA |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UUC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGUG G-G|CG-CAG 4261 GAAGUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACA UACCUCUGGU GUACCAGU|U GUCGU(GC-C A-)ACGGCA- UAGCUGGGUA 4381 GCU-AUGUAU GGACGGGAUA AGUGCU(GAA AGCAUCUA)A GCAUGAAGCC CCCCUC|AAG 4441 AUGAGACUUC C|C-|AAC-- -(-UUCG-)- --GUU--AU- AAGA|-UC|C CUCA-(AAGA 4501 UG-A)UGAGG -UUAAUAG|G UUCG|GGGUG -GAAGCAUA- -(GCGA-)-- UAUGU|GG-A 4561 GCUG|A|CGA AUACUAAU~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS B.anthraci 4759 bp RNA RNA 11-JAN-191 DEFINITION Bacillus anthracis. ACCESSION No information KEYWORDS No information. SOURCE Bacillus anthracis. ORGANISM Bacillus anthracis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X64645 ID BA23SRNA standard; RNA; PRO; 2920 BP. XX AC X64645; XX DT 28-JUL-1992 (Rel. 32, Created) DT 28-JUL-1992 (Rel. 32, Last updated, Version 2) XX DE B.anthracis gene for 23S rRNA XX KW 23S ribosomal RNA. XX OS Bacillus anthracis OC Prokaryota; Bacteria; Firmicutes; Endospore-forming rods and cocci; OC Bacillaceae; Bacillus. XX RN [1] RP 1-2920 RA Ash C.A.; RT ; RL Submitted (24-FEB-1992) on tape to the EMBL Data Library by: RL C.A. Ash, Institut of Food Research, Shinfield, Reading, RG2 9AT, RL UK XX RN [2] RP 1-2920 RA Ash C., Collins M.D.; RT "Comparative analysis of 23S ribosomal RNA gene sequences of B. RT anthracis and emetic Bacillus cereus determined by PCR-direct RT sequencing"; RL FEMS Microbiol. Lett. 94:75-80(1992). XX CC *source: strain=var Sterne; XX CC See also x64646 XX FH Key Location/Qualifiers FH FT rRNA 1..2920 FT /product="23S rRNA" XX SQ Sequence 2920 BP; 787 A; 618 C; 882 G; 600 T; 33 other; BASE COUNT 787 a 618 c 882 g 600 t 1872 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------nn nnnnnnnnn- --nnnGGGCG CACGGUGGAU 121 G|CCUUGA|C ACUAGG|AG| UC-GAUGAAG GA|CGGG(AC UA-AC-)G|- CCG-AUAUGC 181 UUCGGG|-GA GCU(G-UA-A GUA-)AGCUU UG-AUC-CGA AGAUU|UCCG AAUGGG(GAA 241 A)CCC|ACCA UAC-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --guaaug)- GUAUGGU-AU CC-UUAUCU( 481 GA-AUACA-- UA)GGG-UAA -G-G--AAG- AcagAC|CC- AGGGAACU|G A(AACA)UCU 541 AAGUA-CCUG GAGGAAGAGA AAGC(-AAAU --)GCGAU|U UC-CUGAGUA GC(GGCGA)G 601 CGA-A-ACGG AAcAUA-GCC CAAAccaaga -gg------- -----(cuug -)-------- 661 ----ccucuu gggguuguag gacauucuau a--------- ---------- ---------- 721 -----cggag uuacaaagga acg-aggu-a gacGAAgcga c-c(u-ggaa a)g-guccgu 781 |c(gua)gaG GG(UAACAAC )CCCGU-Agu c-gaaacuuc guucucucuu ---------- 841 ---------- ----gaaugu auccu---GA GUACGGCGGA A(CACGUG-A AA)UUCCGUC 901 GGAAUCU-GG G-AG(GACCA U)CU-CCC-A AGGCUAA--- -AUACUCCCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-GA GAUCCUGAAA CCGU-GUGCC UACAA-A-UA GUCAGAGCCC --G------- 1081 --------(- ---uuaa--) ---------- -----C-GGG UGAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUC- CCGUGC-GAG GUUAAgcu-( -gaaga)-gG 1201 C-GGAGCCGC AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC GU-------- ---------- 1261 ---------- ------u-ua G-UACGUGGU CGUA-GACCC GAAAC-CAG- GUGA-UCUAC 1321 CCAUGUC|CA GGGUGAAGUU CAGG(UAAC) AC-UGAAUGG AGGCCCGAAC C-CACGCAC( 1381 -GUUGAAAA) GUGCG|GGG- AUGAG-GUGU GGGUAGCGGA (-GAAAU)UC CAAUCGAACC 1441 UGGAGAUAGC UGGUUCUCCC CGAAAUAGCU (-UUAG)GGC UAGC|-CUUA AGUgu--aa| 1501 -gag|UCUUG G|AGGUAG|A GC-ACUGA-U UGGACUA-GG |-GGUCC(uc auc)GGAUUA 1561 CCGAAUUCAG -UCAAACUCC GAA-UG-|CC A-AUG-a--- cuua----u| ccu-uaggAG 1621 UCAGAC--UG C-GAGU(GAU AAG)AUCCGU -AGUC-AAAA GGG(-AAACA G-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAGUG-UGUA -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 AGUUGCUUA- GACAACUAGG AUGUUGGC(U UAGAAGCA)G CCAC-CAN|N (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUA GU-----CGA GU-GAC-UC- -UGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA AUACA-C|C| ACCGAAGCU| GCGG|auuga uacc---(aa u--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- gguaucagu- GG-UAGGGGA G|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-ACAG-U 2341 GAAGUCA-G- A-CC(-GGAA -)GGA--CUG GUGG|AGUGC U-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGA-AA GNCGGG(UGA GAAU)CCCGU C|CACC-GAA UGCCUAAGGU 2461 UUCCUG-AGG AAGG-(CUCG U)CC|G-CUC AGGGUUAGU| CAG|G-ACCU AAGCCGAGGC 2521 C(GACA)-n- --GU-AGGCG AUGG-ACAAC AGG-(UU-GA UAUU)C-CUG U|AC|ca-c- 2581 cucuuu-auc --guu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---ugagcaa u------gga g--gga-cgc agaaggaua- gaag-aa|gc g-ugc(gau- 2761 -ugguu-gu- --)gc-acgu -|ccaa---- ---------- ---gcag-uu aggc------ 2821 --ugaua-ag uagg(ca-aa -u-)cc|g-- cuuaucguga ---------a ggcu-gagcu 2881 gug-augg|g ga-|------ -----agcuc c(-uuau--) ggagc----- ------gaag 2941 --ucuuu-ga uucc-ccg-| cugccaagaa a-agcuuc-u a-gcga---- ------ga-u 3001 -aaaag--gu g|c|CUGUAC CGCAAACC(G ACACA)GG|U AG-GCGAGG- A-(GAGAA)U 3061 CCUAAGGUGU ||GCGAGAGA ACUCUGGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCUUUC--- ---------- ---------- 3181 u(-uaac-)g ---------- ---------- --GAAAG-C| C(GCA)GUGA AUAGGCC-CA 3241 AG|CGACU-- ---GU(UUAG CAAAA)ACAC AGCUCUCUG| CGAANNC(GU AA------)N 3301 NNNNNGU-AU AGGGGGUGA- CACCUGCCCG GU|GCUG-GA A-GGUUAAGG AGAGGGGUUA 3361 GC-------- (G-UAA)--- --------GC GA-AGCUCUG AACUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGUGUAAC GA-UUUGGGC ACUGUCUCAA CCAGAGACUC 3541 G|GUGAAAUU |AUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCNGUGG|A GCU-UUACUG U|AGCCUGAU AUU|GAAUUU UGGUACAGUU UGUACAGGAU 3661 AGGCGGGAGC CUUUGAAA-- CCGGAGC(GC UA)GCUUCGG UGGANGCGCU -G-GUGGGAU 3721 ACCGCC|CUG A-CUGUAUUG AAA-UUCUAA -CCUACG--- -GGUC(--UU -AUC)-GACC 3781 CGGGA-GACA GUGUCAGGUG GG-CAGUUUG ACUG(GGG)C NGUC|GCCUC C(UAA-AGUG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(U UGGAAA)UCA UUCGUA-GA| 3901 GU(G|CAAAG )GCAUAAGGG AGCUUGACUG CGAGAC(CUA CAA)GUCGAG NAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGUG G-G|CG-CAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACG CACCGCUGGU GUACCAGU|U GUUCU(GC-C A-)AGGGCA- UAGCUGGGUA 4381 GCU-AUGUGC GGAAGGGAUA AGUGCU(GAA AGCAUCUA)A GCAUGAAGCC CCCCUC|AAG 4441 AUGAGAUUUC C|CA|UAGC- -(-GUAA-)- -nnnA--GU- AAGA|-UC|C CUGA-(AAGA 4501 UG-A)UCAGG -UUGAUAG|G UUCG|AGGUG -GAAGCAUG- -(GUGA-)-- CAUGU|GG-A 4561 GCUG|A|CGA AUACUAAUA- GAUCGA-GG| ACUUAA-CCA U-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS B.cereus.1 4759 bp RNA RNA 11-JAN-191 DEFINITION Bacillus cereus. ACCESSION No information KEYWORDS No information. SOURCE Bacillus cereus. ORGANISM Bacillus cereus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: S43429 LOCUS S113019 2921 bp DNA NLM 04-NOV-1992 DEFINITION 23S ribosomal RNA [Bacillus cereus, NCTC 11143, Genomic, 2921 nt] ACCESSION S43429 KEYWORDS . SOURCE Bacillus cereus NCTC 11143 ORGANISM Bacillus cereus Unclassified. REFERENCE 1 (bases 1 to 2921) AUTHORS Ash,C. and Collins,M.D. TITLE Comparative analysis of 23S ribosomal RNA gene sequences of Bacillus anthracis and emetic Bacillus cereus determined by PCR-direct sequencing. JOURNAL FEMS Microbiol. Lett. 73, 75-80 (1992) STANDARD full automatic COMMENT This entry incorporates information provided by the National Library of Medicine's GenInfo Backbone as NCBI gibbsq 113019. This sequence comes from Fig. 2. FEATURES Location/Qualifiers rRNA 1..2921 /note="Description: 23S ribosomal RNA" BASE COUNT 789 a 618 c 882 g 601 t 31 others ORIGIN BASE COUNT 789 a 618 c 882 g 601 t 1869 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------nn nnnnnnnnn- --nnnGGGCG CACGGUGGAU 121 G|CCUUGA|C ACUAGG|AG| UC-GAUGAAG GA|CGGG(AC UA-AC-)G|- CCG-AUAUGC 181 UUCGGG|-GA GCU(G-UA-A GUA-)AGCUU UG-AUC-CGA AGAUU|UCCG AAUGGG(GAA 241 A)CCC|ACCA UAC-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --guaaug)- GUAUGGU-AU CC-UUAUCU( 481 GA-AUACA-- UA)GGG-UAA -G-G--AAG- ACAGAC|CC- AGGGAACU|G A(AACA)UCU 541 AAGUA-CCUG GAGGAAGAGA AAGC(-AAAU --)GCGAU|U UC-CUGAGUA GC(GGCGA)G 601 CGA-A-ACGG AAcAUA-GCC CAAAccaaga -gg------- -----(cuug -)-------- 661 ----ccucuu gggguuguag gacauucuau a--------- ---------- ---------- 721 -----cggag uuacaaagga acg-aggu-a gacGAAgcga c-c(u-ggaa a)g-guccgu 781 |c(gua)gaG GG(UAACAAC )CCCGU-Agu c-gaaacuuc guucucucuu ---------- 841 ---------- ----gaaugu auccu---GA GUACGGCGGA A(CACGUG-A AA)UUCCGUC 901 GGAAUCU-GG G-AG(GACCA U)CU-CCC-A AGGCUAA--- -AUACUCCCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-GA GAUCCUGAAA CCGU-GUGCC UACAA-A-UA GUCAGAGCCC --g------- 1081 --------(- ---uuaa--) ---------- -----c-ggG UGAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUC- CCGUGC-GAG GUUAAGCU-( -gaaga)-GG 1201 C-GGAGCCGC AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC GU-------- ---------- 1261 ---------- ------u-ua G-UACGUGGU CGUA-GACCC GAAAC-CAG- GUGA-UCUAC 1321 CCAUGUC|CA GGGUGAAGUU CAGG(UAAC) AC-UGAAUGG AGGCCCGAAC C-CACGCAC( 1381 -GUUGAAAA) GUGCG|GGG- AUGAG-GUGU GGGUAGCGGA (-GAAAU)UC CAAUCGAACC 1441 UGGAGAUAGC UGGUUCUCCC CGAAAUAGCU (-UUAG)GGC UAGC|-CUUA AGUGU--aa| 1501 -gag|UCUUG G|AGGUAG|A GC-ACUGA-U UGGACUA-GG |-GGUCC(uc auc)GGAUUA 1561 CCGAAUUCAG -UCAAACUCC GAA-UG-|CC A-AUG-a--- cuua----u| ccu-uAGGAG 1621 UCAGAC--UG C-GAGU(GAU AAG)AUCCGU -AGUC-AAAA GGG(-AAACA G-)CCNAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAGUG-UGUA -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 AGUUGCUUA- GACAACUAGG AUGUUGGC(U UAGAAGCA)G CCAC-CAN|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUA GU-----CGA GU-GAC-UC- -UGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA AUACA-C|C| ACCGAAGCU| GCGG|auuga uacc---(ga au-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- gguaucagu- GG-UAGGGGA G|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-ACAG-U 2341 GAAGUCA-G- A-CC(-GGAA -)GGA--CUG GUGG|AGUGC U-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGA-AA NACGGG(UGA GAAU)CCCGU C|CACC-GAA UGCCUAAGGU 2461 UUCCUG-AGG AAGG-(CUCG U)CC|G-CUC AGGGUUAGU| CAG|G-ACCU AAGCCGAGGC 2521 C(GACA)-n- --GU-AGGCG AUGG-ACAAC AGG-(UU-GA UAUU)C-CUG U|AC|ca-c- 2581 cucuuu-auc --guu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---ugagcaa u------gga g--gga-cgc agaaggaua- gaag-aa|gc g-ugc(gau- 2761 -ugguu-gu- --)gc-acgu -|ccaa---- ---------- ---gcag-uu aggc------ 2821 --ugaua-ag uagg(ca-aa -u-)cc|g-- cuuaucguaa ---------a ggcu-gagcu 2881 gug-augg|g ga-|------ -----agcuc c(-uuau--) ggagc----- ------gaag 2941 --ucuuu-ga uucc-ccg-| cugccaagaa a-agcuuc-u a-gcga---- ------ga-u 3001 -aaaag--gu g|c|CUGUAC CGCAAACC(G ACACA)GG|U AG-GCGAGG- A-(GAGAA)U 3061 CCUAAGGUGU ||GCGAGAGA ACUCUGGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCUUU---- ---------- ---------c 3181 u(-uaac-)g g--------- ---------- ---AAAG-C| C(GCA)GUGA AUAGGCC-CA 3241 AG|CGACU-- ---GU(UUAG CAAAA)ACAC AGCUCUCUG| CGAANNC(GU AA------)N 3301 NNNNNGU-AU AGGGGGUGA- CACCUGCCCG GU|GCUG-GA A-GGUUAAGG AGAGGGGUUA 3361 GC-------- (G-UAA)--- --------GC GA-AGCUCUG AACUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGUGUAAC GA-UUUGGGC ACUGUCUCAA CCAGAGACUC 3541 G|GUGAAAUU |AUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCNGUGG|A GCU-UUACUG U|AGCCUGAU AUU|GAAUUU UGGUACAGUU UGUACAGGAU 3661 AGGCGGGAGC CUUUGAAA-- CCGGAGC(GC UA)GCUUCGG UGGANGCGCU -G-GUGGGAU 3721 ACCGCC|CUG A-CUGUAUUG AAA-UUCUAA -CCUACG--- -GGUC(--UU -AUC)-GACC 3781 CGGGA-GACA GUGUCAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AGUG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(U UGGAAA)UCA UUCGUA-GA| 3901 GU(G|CAAAG )GCAUAAGGG AGCUUGACUG CGAGAC(CUA CAA)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGUG G-G|CG-CAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACG CACCGCUGGU GUACCAGU|U GUUCU(GC-C A-)AGGGCA- UAGCUGGGUA 4381 GCU-AUGUGC GGAAGGGAUA AGUGCU(GAA AGCAUCUA)A GCAUGAAGCC CCCCUC|AAG 4441 AUGAGAUUUC C|CA|UAGCg -(-uaa--)- -nnna--GU- AAGA|-UC|C CUGA-(AAGA 4501 UG-A)UCAGG -UUGAUAG|G UUCG|AGGUG -GAAGCAUG- -(GUGA-)-- CAUGU|GG-A 4561 GCUG|A|CGA AUACUAAUA- GAUCGA-GG| ACUUAA-CCA U-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS B.cereus.2 4759 bp RNA RNA 11-JAN-191 DEFINITION Bacillus cereus. ACCESSION No information KEYWORDS No information. SOURCE Bacillus cereus. ORGANISM Bacillus cereus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X94448 LOCUS BC16S23SD 2978 bp DNA BCT 05-JAN-1996 DEFINITION B.cereus 23S rDNA and 16S-23S spacer region. ACCESSION X94448 NID g1149455 KEYWORDS 16S ribosomal RNA; 16S rRNA gene; 16S-23S rRNA intergenic spacer region; 23S ribosomal RNA; 23S rRNA gene. SOURCE Bacillus cereus. ORGANISM Bacillus cereus Eubacteria; Firmicutes; Low G+C gram-positive bacteria; Bacillaceae; Bacillus. REFERENCE 1 (bases 1 to 2978) AUTHORS Meile,L., Geissmann,T., Gut,M., Baumgartner,A. and Teuber,M. TITLE Differentiation betwen Bacillus thuringiensis and Bacillus cereus according to their 23s rDNA sequences JOURNAL Unpublished REFERENCE 2 (bases 1 to 2978) AUTHORS Geissmann,T. TITLE Direct Submission JOURNAL Submitted (27-DEC-1995) T. Geissmann, Swiss Federal Institute of Technology, ETH, Laboratory of Food Microbiology, ETH Zentrum, CH-8092 Zuerich, SWITZERLAND COMMENT NCBI gi: 1149455 FEATURES Location/Qualifiers source 1..2978 /organism="Bacillus cereus" /strain="DSM31" rRNA <1..54 /gene="16s rRNA" /product="16S ribosomal RNA" misc_feature 55..196 /note="16S-23S rRNA spacer" rRNA 197..>2978 /gene="23S rRNA" /product="23S ribosomal RNA" BASE COUNT 805 a 624 c 894 g 650 t 5 others ORIGIN BASE COUNT 754 a 594 c 854 g 575 t 1982 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGUUAG- --AAAGGGCG CACGGUGGAU 121 G|CCUUGA|C ACUAGG|AG| UC-GAUGAAG GA|CGGG(AC UA-AC-)G|- CCG-AUAUGC 181 UUCGGG|-GA GCU(G-UA-A GUA-)AGCUU UG-AUC-CGA AGAUU|UCCG AAUGGG(GAA 241 A)CCC|ACCA UAC-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --guaaug)- GUAUGGU-AU CC-UUAUCU( 481 GA-AUACA-- UA)GGG-UAA -G-G--AAG- ACAGAC|CC- AGGGAACU|G A(AACA)UCU 541 AAGUA-CCUG GAGGAAGAGA AAGC(-AAAU --)GCGAU|U UC-CUGAGUA GC(GGCGA)G 601 CGA-A-ACGG AAcAUA-GCC CAAAccaaga -gg------- -----(cuug -)-------- 661 ----ccucuu gggguuguag gacauucuau a--------- ---------- ---------- 721 -----cggag uuacaaagga acg-aggu-a gacGAAgcga c-c(u-ggaa a)g-guccgu 781 |c(gua)gaG GG(UAACAAC )CCCGU-Agu c-gaaacuuc guucucucuu ---------- 841 ---------- ----gaaugu auccu---GA GUACGGCGGA A(CACGUG-A AA)UUCCGUC 901 GGAAUCU-GG G-AG(GACCA U)CU-CCC-A AGGCUAA--- -AUACUCCCU AGUGAUCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-GA GAUCCUGAAA CCGU-GUGCC UACAA-A-UA GUCAGAGCCC --g------- 1081 --------(- ---uuaa--) ---------- -----c-ggG UGAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUC- CCGUGC-GAG GUUAAGCU-( -gaaga)-GG 1201 C-GGAGCCGC AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC GU-------- ---------- 1261 ---------- ------u-ua G-UACGUGGU CGUA-GACCC GAAAC-CAG- GUGA-UCUAC 1321 CCAUGUC|CA GGGUGAAGUU CAGG(UAAC) AC-UGAAUGG AGGCCCGAAC C-CACGCAC( 1381 -GUUGAAAA) GUGCG|GGG- AUGAG-GUGU GGGUAGCGGA (-GAAAU)UC CAAUCGAACC 1441 UGGAGAUAGC UGGUUCUCCC CGAAAUAGCU (-UUAG)GGC UAGC|-CUUA AGUGU--aa| 1501 -gag|UCUUG G|AGGUAG|A GC-ACUGA-U UGGACUA-GG |-GGUCC(uc auc)GGAUUA 1561 CCGAAUUCAG -UCAAACUCC GAA-UG-|CC A-AUG-a--- cuua----u| ccu-uAGGAG 1621 UCAGAC--UG C-GAGU(GAU AAG)AUCCGU -AGUC-AAAA GGG(-AAACA G-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAGUG-UGUA -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 AGUUGCUUA- GACAACUAGG AUGUUGGC(U UAGAAGCA)G CCAC-CAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUA GU-----CGA GU-GAC-UC- -UGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA AUACA-C|C| ACCGAAGCU| GCGG|auuga uacc---(aa u--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- gguaucagu- GG-UAGGGGA G|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-ACAG-U 2341 GAAGUCA-G- A-CC(-GGAA -)GGA--CCG GUGG|AGUGN U-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGA-AA GACGGG(UGA GAAU)CCCGU C|CACC-GAA UGCCUAAGGU 2461 UUCCUG-AGG AAGG-(CUCG U)CC|G-CUC AGGGUUAGU| CAG|G-ACCU AAGCCGAGGC 2521 C(GACA)-G- GCGU-AGGCG AUGG-ACAAC AGG-(UU-GA UAUU)C-CUG U|AC|ca-c- 2581 cucuuu-auc --guu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---ugagcaa u------gga g--gga-cgc agaaggaua- gaag-aa|gc g-ugc(gau- 2761 -ugguu-gu- --)gc-acgu -|ccaa---- ---------- ---gcag-uu aggc------ 2821 --ugaua-ag uagg(ca-aa -u-)cc|g-- cuuaucguaa ---------a ggcu-gagcu 2881 gug-augg|g ga-|------ -----agcuc c(-uuau--) ggagc----- ------gaag 2941 --ucuuu-ga uucc-ccg-| cugccaagaa a-agcuuc-u a-gcga---- ------ga-u 3001 -aaaag--gu g|c|CUGUAC CGCAAACC(G ACACA)GG|U AG-GCGAGG- A-(GAGAA)U 3061 CCUAAGGUGU ||GCGAGAGA ACUCUGGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCUUU---- ---------- ---------c 3181 u(-uaac-)g g--------- ---------- ---AAAG-C| C(GCA)GUGA AUAGGCC-CA 3241 AG|CGACU-- ---GU(UUAG CAAAA)ACAC AGCUCUCUG| CGAAGCC(GU AA------)N 3301 NNNAAGU-AU AGGGGGUGA- CACCUGCCCG GU|GCUG-GA A-GGUUAAGG AGAGGGGUUA 3361 GC-------- (G-UAA)--- --------GC GA-AGCUCUG AACUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGUGUAAC GA-UUUGGGC ACUGUCUCAA CCAGAGACUC 3541 G|GUGAAAUU |AUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCGUGG|A GCU-UUACUG U|AGCCUGAU AUU|GAAUUU UGGUACAGUU UGUACAGGAU 3661 AGGCGGGAGC CAUUGAAA-- CCGGAGC(GC UA)GCUUCGG UGGAGGCGCU -G-GUGGGAU 3721 ACCGCC|CUG A-CUGUAUUG AAA-UUCUAA -CCUACG--- -GGUC(--UU -AUC)-GACC 3781 CGGGA-GACA GUGUCAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AGUG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(U UGGAAA)UCA UUCGUA-GA| 3901 GU(G|CAAAG )GCAUAAGGG AGCUUGACUG CGAGAC(CUA CAA)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGUG G-G|CG-UAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACG CACCGCUGGU GUACCAGU|U GUUCU(GC-C A-)AGGGCA- UAGCUGGGUA 4381 GCU-AUGUGC GGAAGGGAUA AGUGCU(GAA AGCAUCUA)A Gnnnnnnnnn nnnnnn|nnn 4441 nnnnnnnnnn n|nn|nnnn- -(-nnnn-)- -nnnn--nn- nnnn|-nn|n nnnn-(nnnn 4501 nn-n)nnnnn -nnnnnnn|n nnnn|nnnnn -nnnnnnnn- -(nnnn-)-- nnnnn|nn-n 4561 nnnn|n|nnn nnnnnnnnn- nnnnn-nnn| nnnnnn-nnn n-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS B.thuringi 4759 bp RNA RNA 11-JAN-191 DEFINITION Bacillus thuringiensis. ACCESSION No information KEYWORDS No information. SOURCE Bacillus thuringiensis. ORGANISM Bacillus thuringiensis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X89895 LOCUS BT16S23S 2978 bp DNA BCT 28-JUL-1995 DEFINITION B.thuringiensis DNA for 16S and 23S rRNA and spacer region. ACCESSION X89895 KEYWORDS 16S ribosomal RNA; 16S rRNA gene; 16S-23S rRNA spacer; 23S ribosomal RNA; 23S rRNA gene. SOURCE Bacillus thuringiensis. ORGANISM Bacillus thuringiensis Eubacteria; Firmicutes; Low G+C gram-positive bacteria; Bacillaceae; Bacillus. REFERENCE 1 (bases 1 to 2978) AUTHORS Meile,L., Gut, Baumgartner,A. and Teuber,M. TITLE Differentiation between Bacillus thuringiensis and Bacillus cereus according to their 23S rDNA sequences JOURNAL Unpublished REFERENCE 2 (bases 1 to 2978) AUTHORS Meile,L. TITLE Direct Submission JOURNAL Submitted (21-JUL-1995) to the EMBL/GenBank/DDBJ databases. L. Meile, Food Microbiology, Swiss Federal Inst. of Technology ETH, ETH-Zentrum, LFV, CH- 8092 Zuerich, SWITZERLAND COMMENT NCBI gi: 927390 FEATURES Location/Qualifiers source 1..2978 /organism="Bacillus thuringiensis" /strain="DSM 2046" rRNA <1..54 /gene="16S rRNA" /product="16S ribosomal RNA" misc_feature 55..195 /note="16S-23S rRNA spacer" rRNA 196..2978 /gene="23S rRNA" /product="16S ribosomal RNA" BASE COUNT 808 a 622 c 893 g 655 t ORIGIN BASE COUNT 757 a 592 c 853 g 581 t 1976 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGUUAG- --AAAGGGCG CACGGUGGAU 121 G|CCUUGA|C ACUAGG|AG| UC-GAUGAAG GA|UGGG(AC UA-AC-)G|- CCG-AUAUGC 181 UUCGGG|-GA GCU(G-UA-A GUA-)AGCUU UG-AUC-CGA AGAUU|UCCG AAUGGG(GAA 241 A)CCC|ACUA UAC-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --guaaug)- GUAUGGU-AU CC-UUACCU( 481 GA-AUACA-- UA)GGG-UAU -G-G--AAG- ACAGAC|CC- AGGGAACU|G A(AACA)UCU 541 AAGUA-CCUG GAGGAAGAGA AAGC(-AAAU --)GCGAU|U UC-CUGAGUA GC(GGCGA)G 601 CGA-A-ACGG AAcAUA-GCC CAAAccaaga -gg------- -----(cuug -)-------- 661 ----ccucuu gggguuguag gacauucuau a--------- ---------- ---------- 721 -----cggag uuacaaagga acg-aggu-a gacGAAgcga c-c(u-ggaa a)g-guccgu 781 |c(gua)gaG GG(UAACAAC )CCCGU-Agu c-gaaacuuc guucucucuu ---------- 841 ---------- ----gaaugu agccu---GA GUACGGCGGA A(CACGUG-A AA)UUCCGUC 901 GGAAUCU-GG G-AG(GACCA U)CU-CCC-A AGGCUAAAUA AAUACUCCCU AGUGAUCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GG--A- 1021 -GUGAAA-GA GAUCCUGAAA CCGU-GUGCC UACAA-A-UA GUCAGAGCCC --g------- 1081 --------(- ---uuaa--) ---------- -----u-ggG UGAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUC- CCGUGC-AAG GUUAAGCU-( -gaaga)-GG 1201 C-GGAGCGGC AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC GU-------- ---------- 1261 ---------- ------u-ua G-UACGUGGU CGUA-GACCC GAAAC-CAG- GUGA-UCUAC 1321 CCAUGUC|CA GGGUGAAGUU CAGG(UAAC) AC-UGAAUGG AGGCCCGAAC C-CACGCAC( 1381 -GUUGAAAA) GUGCG|GGG- AUGAG-GUGU GGGUAGCGGA (-GAAAU)UC CAAUCGAACC 1441 UGGAGAUAGC UGGUUCUCCC CGAAAUAGCU (-UUAG)GGC UAGC|-CUUA AGUGU--aa| 1501 -gag|UCUUG G|AGGUAG|A GC-ACUGA-U UGAACUA-GG |-GGUCC(uc auc)GGAUUA 1561 CCGAAUUCAG -UCAAACUCC GAA-UG-|CC A-AUG-a--- cuua----u| ccu-uAGGAG 1621 UCAGAC--UG C-GAGU(GAU AAG)AUCCGU -AGUC-AAGA GGG(-AAACA G-)CCCAGAU 1681 CGCCAGCUAA G-GU|CCCA- AAGUG-UGUA -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 AGUUGCUUA- GACAACUAGG AUGUUGGC(U UAGAAGCA)G CCAC-CAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUA GU-----CGA GU-GAC-UC- -UGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA AUACA-C|C| ACCGAAGCU| GCGA|auuga uacc---(aa u--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- gguaucagu- GG-UAGGGGA G|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-GCAG-U 2341 GAAGUCA-G- A-CC(-GGAA -)GGA--CUG GUGG|AGCGC U-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGA-AA GACGGG(UGA GAAU)CCCGU C|CACC-GAA UGCCUAAGGU 2461 UUCCUG-AGG AAGG-(CUCG U)CC|G-CUC AGGGUUAGU| CAG|G-ACCU AAGCCGAGGC 2521 C(GACA)-G- GCGU-AGGCG AUGG-ACAAC AGG-(UU-GA UAUU)C-CUG U|AC|ca-c- 2581 cucuuu-auc --guu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---ugagcaa u------gga g--gga-cgc agaaggaua- gaag-aa|gc g-ugc(gau- 2761 -ugguu-gu- --)gc-acgu -|ccaa---- ---------- ---gcag-uu aggc------ 2821 --ugaua-ag uagg(ca-aa -u-)cc|g-- cuuaucguga ---------a ggcu-gagcu 2881 gug-augg|g ga-|------ -----agcuc c(-uuau--) ggagc----- ------gaag 2941 --ucuuu-ga uucc-ccg-| cugccaagaa a-agcuuc-u a-gcga---- ------ga-u 3001 -aaaag--gu g|c|CUGUAC CGCAAACC(G ACACA)GG|U AG-GCGAGG- A-(GAGAA)U 3061 CCUAAGGUGU ||GCGAGAGA ACUCUGGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCUUU---- ---------- ---------c 3181 u(-uaac-)g g--------- ---------- ---AAAG-C| C(GCA)GUGA AUAGGCC-CA 3241 AG|CGACU-- ---GU(UUAG CAAAA)ACAC AGCUCUCUG| CGAAGCC(GU AA------)G 3301 GCGAAGU-AU AGGGGGUGA- CACCUGCCCG GU|GCUG-GA A-GGUUAAGG AGAGGGGUUA 3361 GC-------- (G-UAA)--- --------GC GA-AGCUCUG AACUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GAUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGUGUAAC GA-UUUGGGC ACUGUCUCAA CCAGAGACUC 3541 G|GUGAAAUU |AUAGUAC-C UG(UGAAAAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCGUGG|A GCU-UUACUG U|AGCCUGAU AUU|GAAUUU UGGUACAGUU UGUACAGGAU 3661 AGGCGGGAGC CAUUGAAA-- CCGGAGC(GC UA)GCUUCGG UGGAGGCGCU -G-GUGGGAU 3721 ACCGCC|CUG A-CUGUAUUG AAA-UUCUAA -CCUACG--- -GGUC(--UU -AUC)-GACC 3781 CGGGA-GACA GUGUCAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AGUG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(U UGGAAA)UCA UUCGUA-GA| 3901 GU(G|CAAAG )GCAUAAGGG AGCUUGACUG CGAGAC(CUA CAA)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GUAG 4141 UAGUC)-GGU CCCAAGGGU| U-GGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGUG G-G|CG-UAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACG CACCGCUGGU GUACCAGU|U GUUCU(GC-C A-)AGGGCA- UAGCUGGGUA 4381 GCU-AUGUGC GGAAGGGAUA AGUGCU(GAA AGCAUCUn)n nnnnnnnnnn nnnnnn|nnn 4441 nnnnnnnnnn n|nn|nnnn- -(-nnnn-)- -nnnn--nn- nnnn|-nn|n nnnn-(nnnn 4501 nn-n)nnnnn -nnnnnnn|n nnnn|nnnnn -nnnnnnnn- -(nnnn-)-- nnnnn|nn-n 4561 nnnn|n|nnn nnnnnnnnn- nnnnn-nnn| nnnnnn-nnn n-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS B.globispo 4759 bp RNA RNA 11-JAN-191 DEFINITION Bacillus globisporus. ACCESSION No information KEYWORDS No information. SOURCE Bacillus globisporus. ORGANISM Bacillus globisporus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X68424 ID BG23SRRN standard; DNA; PRO; 2932 BP. XX AC X68424; XX DT 29-MAR-1993 (Rel. 35, Created) DT 29-MAR-1993 (Rel. 35, Last updated, Version 2) XX DE B.globisporus gene for 23S rRNA XX KW 23S ribosomal RNA. XX OS Bacillus globisporus OC Prokaryota; Bacteria; Firmicutes; Endospore-forming rods and cocci; OC Bacillaceae; Bacillus. XX RN [1] RP 1-2932 RA Ludwig W.; RT ; RL Submitted (08-SEP-1992) on tape to the EMBL Data Library by: RL W. Ludwig, Lehrst. fuer Mikrobiologie TU Muenchen, Arcisstr. 21, RL 8000 Muenchen 2, FRG XX RN [2] RP 1-2932 RA Ludwig W., Kirchof G., Klugbauer N., Weizenegger M., Betzl D., RA Ehrmann M., Hertel C., Jilg S., Tatzel R., Zitzelsberger H., RA Liebl S., Hochberger M., Shah J., Lane D., Wallnoef P.R.; RT "Complete 23S ribosomal RNA sequences of Gram-positive Bacteria RT with a low DNA G+C content"; RL Syst. Appl. Microbiol. 15:487-501(1992). XX CC *source: strain=DSM 4; XX FH Key Location/Qualifiers FH FT rRNA 1..2932 FT /product="23S ribosomal RNA" XX SQ Sequence 2932 BP; 818 A; 624 C; 900 G; 590 T; 0 other; BASE COUNT 818 a 624 c 900 g 590 t 1827 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGUUAG- --AAAGGGCG CACGGUGGAU 121 G|CCUUGG|C ACUAGG|AG| CC-GAAGAAG GA|CGGG(AC UA-AC-)A|- CCG-AUAUGC 181 UUUGGG|-GA GCU(G-UA-C GUA-)AGCGU UG-AUC-CAG AGAUU|UCCG AAUGGG(GGA 241 A)CCC|ACUA UCU-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --uuaguc)- GGAUAGU-AU CC-UUACGU( 481 GA-AUACA-- UA)GCG-UGA -G-G--AAG- GcagAC|CC- AGGGAACU|G A(AACA)UCU 541 AAGUA-CCUG GAGGAAGAGA AAGA(-AAAA --)UCGAU|U UC-CUGAGUA GC(GGCGA)G 601 CGA-A-ACGG AA-AGA-GCC CAAAccaaga -ag------- -----(cuug -)-------- 661 ----cuucuu gggguuguag gacacucuau ---------- ---------- ---------- 721 ----acggag uuacaaaaga aag-uuau-a aauGAAgcgg u-c(u-ggaa a)g-gcccgc 781 |c(aaa)gaC GG(UAACAGC )CCGGU-Agu u-gaaauggc uuucccucca ---------- 841 ---------- ----gagugg auccu---GA GUACGGCGGA A(CACGUG-A AA)UUCCGUC 901 GGAAUCC-GG G-AG(GACCA U)CU-CCC-A AGGCUAA--- -AUACUCCCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-CA GUUCCUGAAA CCGU-GUGCC UACAA-G-UA GUUAGAGCCC --G------- 1081 --------(- ---uuaa--) ---------- -----U-GGG UGAUAGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUU- UGUUGC-AAG GUUAAGCg-( -gaaaa)-aG 1201 C-GGAGCCGU AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC GC-------- ---------- 1261 ---------- -----au-aa G-UAACAGGU CGUA-GACCC GAAAC-CAG- GUGA-UCUAC 1321 CCAUGUC|CA GGAUGAAGGU AAGG(UAAU) AC-UUACUGG AGGUCCGAAC C-CACGCAC( 1381 -GUUGAAAA) GUGCG|GGG- AUGAG-GUGU GGGUAGCGGA (-GAAAU)UC CAAUCGAACU 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCG AGgua--aa| 1501 -gag|UCAUG G|AGGUAG|A GC-ACUGU-U UGGACUA-GG |-GGCCC(uu cuc)GGGUUA 1561 CCGAAUUCAG -AUAAACUCC GAA-UG-|CC A-U-Gua--- cuua----u| acu-cgggAG 1621 UCAGAC--UG C-GAGU(GAU AAG)AUCCGU -AGUC-GAAA GGG(-AAACA G-)CCCAGAC 1681 CACCAGUUAA G-GU|CCCC- AAAUA-UAUG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 GGUUGCUUA- GACAACCAGG AUGUUGGC(U UAGAAGCA)G CCAC-CAU|U (GAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CGA GU-GAC-CC- -CGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACAUA-U|U| ACCGAAACU| GUGG|augaa ccuc---(uu ua-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- gagguucgu- GG-UAGGAGA G|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCGG-U 2341 GAAGUCA-G- A-CC(-GGAA -)GGA--CUG GUGG|AGCGC U-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGA-AA GAAGGG(UGA GAAU)CCCUU C|CACC-GAA UAUCUAAGGU 2461 UUCCUG-AGG AAGG-(CUCG U)CC|G-CUC AGGGUUAGU| CGG|G-ACCU AAGCCGAGGC 2521 C(GAUA)-G- GCGU-AGGCG AUGG-ACAAC AGG-(UA-GA GAUU)C-CUG U|AC|ca-g- 2581 ug-cua-auu --guu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---uaaccga u------ggg g--uga-cac agaaggaua- ggga-a-|uc g-cac(gaa- 2761 -uggaa-au- --)gu-gcgu -|ccaa---- ---------- ---gcag-ug agug------ 2821 --ugaga-ag uagg(ca-aa -u-)cc|g-- cuucucacga ---------a gcau-gagcu 2881 gug-augg|g ga-|------ -------agg a(aauuaag) -uacg----- ------gaag 2941 --uuccu-ga uuuc-acg-| cugucaagaa a-agccuc-u a-ggaa---- ------ga-g 3001 -uagua--cu g|c|CCGUAC CGCAAACC(G ACACA)GG|U AG-AUGAGG- A-(GAGAA)U 3061 CCUAAGGUGA ||GCGAGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |gcucua--- ---------- ----uuaggg 3181 u(-gcaa-)g cccgag---- ---------- ---agag-C| C(GCA)GUGA AUAGGCC-CA 3241 GG|CGACU-- ---GU(UUAG CAAAA)ACAC AGGUCUCUG| CAAAACC(GU AA------)G 3301 GUGACGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGUGCUUA 3361 GC-------- (U-UCG)--- --------GC GA-AGGUACG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGCAAC GA-UCUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUU |AUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCGUGG|A GCU-UUACUG C|AACCUGAU AUG|GAAUGU UUGUACCGCU UGUACAGGAU 3661 AGGUAGGAGC CGAAGAGA-- CGUGUGC(GC UA)GCAUACG AGGAGGCAAU -G-GUGGGAU 3721 ACUACC|CUG G-CUGUAUGA CCA-UUCUAA -CCCGCC--- -ACGC(--UU -AGC)-GCGU 3781 GGGGA-GACA GUGUCAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AGAG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(A UGGAAA)UCA UUCGCA-GA| 3901 GU(G|UAAAG )GCACAAGGG AGCUUGACUG CGAGAC(UGA CAA)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGCAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-CAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACA CACCGCUGGU GUACCAGU|U GUUCC(GC-C A-)GGAGCA- UCGCUGGGUA 4381 GCU-AUGUGU GGCAGGGAUA AACGCU(GAA AGCAUCUA)A GCGUGAAGCC CCCCUC|AAG 4441 AUGAGAUUUC C|CA|UUUC- -(-UUCG-)- -GAAA--GU- AAGA|-UC|C CUGA-(AAGA 4501 UG-A)UCAGG -UAGAUAG|G UUUG|GAGUG -GAAGUGUA- -(GCGA-)-- UACAU|GG-A 4561 GCGG|A|CAA AUACUAAUC- GAUCGA-GG| ACUUAA-CCA A-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS B.subtil.W 4759 bp RNA RNA 16-JAN-1998 DEFINITION Bacillis subtilis subsp. operon W. ACCESSION No information KEYWORDS No information. SOURCE Bacillis subtilis subsp. operon W. ORGANISM Bacillis subtilis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: AL009126 BASE COUNT 779 a 658 c 920 g 571 t 1831 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGUUAG- --AAAGGGCG CACGGUGGAU 121 G|CCUUGG|C ACUAGG|AG| CC-GAUGAAG GA|CGGG(AC GA-AC-)A|- CCG-AUAUGC 181 UUCGGG|-GA GCU(G-UA-A GCA-)AGCUU UG-AUC-CGG AGAUU|UCCG AAUGGG(GAA 241 A)CCC|ACCA CUC-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --guaaug)- GAGUGGU-AU CC-AUAUCU( 481 GA-AUUCA-- UA)GGA-UAU -GaG--AAG- GCAGAC|CC- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCG GAGGAAGAGA AAGC(-AAAU --)GCGAU|U CC-CUGAGUA GC(GGCGA)G 601 CGA-A-ACGG GA-UCA-GCC CAAAccaaga -gg------- -----(cuug -)-------- 661 ----ccucuu gggguuguag gacacucugu a--------- ---------- ---------- 721 -----cggag uuacaaagga acg-aggu-a gauGAAgagg u-c(u-ggaa a)g-gcccgc 781 |c(aua)ggA GG(UAACAGC )CCUGU-Agu c-aaaacuuc guucucuccu ---------- 841 ---------- ----gagugg auccu---GA GUACGGCGGA A(CACGUG-A AA)UUCCGUC 901 GGAAUCC-GG G-AG(GACCA U)CU-CCC-A AGGCUAA--- -AUACUCCCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-GA GAUCCUGAAA CCGU-GUGCC UACAA-G-UA GUCAGAGCCC --G------- 1081 --------(- ---uuaa--) ---------- -----c-ggg UGAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUC- CCGUGC-AAG GUUAAgca-( -gaaga)-ug 1201 c-GGAGCCGC AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC Gc-------- ---------- 1261 ---------- -----au-ga G-UACGUGGU CGUA-GACCC GAAAC-CAG- GUGA-UCUAC 1321 CCAUGUC|CA GGGUGAAGUU CAGG(UAAC) AC-UGAAUGG AGGCCCGAAC C-CACGCAC( 1381 -GUUGAAAA) GUGCG|GGG- AUGAG-GUGU GGGUAGGGGU (-GAAAU)GC CAAUCGAACC 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCA AGGu---aa| 1501 -gag|UCUUG G|AGGUAG|A GC-ACUGA-U UGGACUA-GG |-GGCCC(cu acc)GGGUUA 1561 CCGAAUUCAG -UCAAACUCC GAA-UG-|CC A-AUG-a--- cuua----u| CCU-UGGGAG 1621 UCAGAC--UG C-GAGU(GAU AAG)AUCCGU -AGUC-GAAA GGG(-AAACA G-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAGUA-UACG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 AGUUGCUUA- GACAACCAGG AUGUUGGC(U UAGAAGCA)G CCAC-CAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CGA GU-GAC-UC- -UGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACGUA-U|C| ACCGAAGCU| GCGG|acugu uc-----(uu c--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --gaacagu- GG-UAGGAGA G|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCUG-U 2341 GAAGCCA-G- A-CC(-GGAA -)GGA--CUG GUGG|AGCGC U-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGA-AA GAGGGG(UGA GAAU)CCCCU C|CACC-GAA UGCCUAAGGU 2461 UUCCUG-AGG AAGG-(CUCG U)CC|G-CUC AGGGUUAGU| CGG|G-ACCU AAGCCGAGGC 2521 C(GAAA)-G- GCGU-AGGCG AUGG-ACAAC AGG-(UU-GA UAUU)C-CUG U|AC|ca-c- 2581 cuccuc-acc --auu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---ugagcaa u------ggg g--gga-cgc aggaggaua- gggu-aa|gc g-cgg(uau- 2761 -uggau-au- --)cc-gcgu -|ccaa---- ---------- ---gcag-uu aggc------ 2821 --uggga-aa uagg(ca-aa -u-)cc|g-- uuucccauaa ---------- ggcu-gagcu 2881 gug-augg|c ga-|------ -------gcg a(aauauag) -uagc----- ------gaag 2941 --uuccu-ga uucc-aca-| cugccaagaa a-agccuc-u a-gcga---- ------gg-u 3001 -gagag--gu g|c|CCGUAC CGCAAACC(G ACACA)GG|U AG-GCGAGG- A-(GAGAA)U 3061 CCUAAGGUGA ||UCGAGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCUCUG--- ---------- ----uuaggg 3181 u(-gcaa-)g cccga----- ---------- --GAGAG-C| C(GCA)GUGA AUAGGCC-CA 3241 GG|CGACU-- ---GU(UUAG CAAAA)ACAC AGGUCUCUG| CGAAGCC(GU AA------)G 3301 GCGAAGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGCGCUUA 3361 GC-------- (G-UAA)--- --------GC GA-AGGUGCG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGCAAC GA-UCUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUU |AUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCGUGG|A GCU-UUACUG C|AGCCUGAU AUU|GAAUGU UGGUACAGCU UGUACAGGAU 3661 AGGUAGGAGC CUUGGAAA-- CCGGAGC(GC CA)GCUUUGG UGGAGGCAUC -G-GUGGGAU 3721 ACUACC|CUG G-CUGUAUUG ACC-UUCUAA -CCCGCC--- -GCCC(--UU -AUC)-GGGC 3781 GGGGA-GACA GUGUCAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAGG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(U UGGAAA)UCA UUCGCA-GA| 3901 GU(G|UAAAG )GCACAAGGG AGCUUGACUG CGAGAC(CUA CAA)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-CAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACG CACCGCUGGU GUACCAGU|U GUUCU(GC-C A-)AGGGCA- UCGCUGGGUA 4381 GCU-AUGUGC GGACGGGAUA AGUGCU(GAA AGCAUCUA)A GCAUGAAGCC CCCCUC|AAG 4441 AUGAGAUUUC C|CA|UUCC- -(-GCAA-)- -GGAA--GU- AAGA|-UC|C CUGA-(AAGA 4501 UG-A)UCAGG -UUGAUAG|G UCUG|AGGUG -GAAGUGUG- -(GCGA-)-- CACAU|GG-A 4561 GCUG|A|CAG AUACUAAUC- GAUCGA-GG| ACUUAA-CCA U-------|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS B.subtil.O 4759 bp RNA RNA 16-JAN-1998 DEFINITION Bacillis subtilis subsp. operon O. ACCESSION No information KEYWORDS No information. SOURCE Bacillis subtilis subsp. operon O. ORGANISM Bacillis subtilis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: AL009126 BASE COUNT 779 a 658 c 920 g 571 t 1831 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGUUAG- --AAAGGGCG CACGGUGGAU 121 G|CCUUGG|C ACUAGG|AG| CC-GAUGAAG GA|CGGG(AC GA-AC-)A|- CCG-AUAUGC 181 UUCGGG|-GA GCU(G-UA-A GCA-)AGCUU UG-AUC-CGG AGAUU|UCCG AAUGGG(GAA 241 A)CCC|ACCA CUC-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --guaaug)- GAGUGGU-AU CC-AUAUCU( 481 GA-AUUCA-- UA)GGA-UAU -GaG--AAG- GCAGAC|CC- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCG GAGGAAGAGA AAGC(-AAAU --)GCGAU|U CC-CUGAGUA GC(GGCGA)G 601 CGA-A-ACGG GA-UCA-GCC CAAAccaaga -gg------- -----(cuug -)-------- 661 ----ccucuu gggguuguag gacacucugu a--------- ---------- ---------- 721 -----cggag uuacaaagga acg-aggu-a gauGAAgagg u-c(u-ggaa a)g-gcccgc 781 |c(aua)ggA GG(UAACAGC )CCUGU-Agu c-aaaacuuc guucucuccu ---------- 841 ---------- ----gagugg auccu---GA GUACGGCGGA A(CACGUG-A AA)UUCCGUC 901 GGAAUCC-GG G-AG(GACCA U)CU-CCC-A AGGCUAA--- -AUACUCCCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-GA GAUCCUGAAA CCGU-GUGCC UACAA-G-UA GUCAGAGCCC --G------- 1081 --------(- ---uuaa--) ---------- -----c-ggg UGAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUC- UCGUGC-AAG GUUAAgca-( -gaaga)-ug 1201 c-GGAGCCGC AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC Gc-------- ---------- 1261 ---------- -----au-ga G-UACGUGGU CGUA-GACCC GAAAC-CAG- GUGA-UCUAC 1321 CCAUGUC|CA GGGUGAAGUU CAGG(UAAC) AC-UGAAUGG AGGCCCGAAC C-CACGCAC( 1381 -GUUGAAAA) GUGCG|GGG- AUGAG-GUGU GGGUAGGGGU (-GAAAU)GC CAAUCGAACC 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCA AGGu---aa| 1501 -gag|UCUUG G|AGGUAG|A GC-ACUGA-U UGGACUA-GG |-GGCCC(cu acc)GGGUUA 1561 CCGAAUUCAG -UCAAACUCC GAA-UG-|CC A-AUG-a--- cuua----u| CCU-UGGGAG 1621 UCAGAC--UG C-GAGU(GAU AAG)AUCCGU -AGUC-GAAA GGG(-AAACA G-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAGUA-UACG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 AGUUGCUUA- GACAACCAGG AUGUUGGC(U UAGAAGCA)G CCAC-CAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CGA GU-GAC-UC- -UGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACGUA-U|C| ACCGAAGCU| GCGG|acugu uc-----(uu c--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --gaacagu- GG-UAGGAGA G|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCUG-U 2341 GAAGCCA-G- A-CC(-GGAA -)GGA--CUG GUGG|AGCGC U-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGA-AA GAGGGG(UGA GAAU)CCCCU C|CACC-GAA UGCCUAAGGU 2461 UUCCUG-AGG AAGG-(CUCG U)CC|G-CUC AGGGUUAGU| CGG|G-ACCU AAGCCGAGGC 2521 C(GAAA)-G- GCGU-AGGCG AUGG-ACAAC AGG-(UU-GA UAUU)C-CUG U|AC|ca-c- 2581 cuccuc-acc --auu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---ugagcaa u------ggg g--gga-cgc aggaggaua- gggu-aa|gc g-cgg(uau- 2761 -uggau-au- --)cc-gcgu -|ccaa---- ---------- ---gcag-uu aggc------ 2821 --uggga-aa uagg(ca-aa -u-)cc|g-- uuucccauaa ---------- ggcu-gagcu 2881 gug-augg|c ga-|------ -------gcg a(aauauag) -uagc----- ------gaag 2941 --uuccu-ga uucc-aca-| cugccaagaa a-agccuc-u a-gcga---- ------gg-u 3001 -gagag--gu g|c|CCGUAC CGCAAACC(G ACACA)GG|U AG-GCGAGG- A-(GAGAA)U 3061 CCUAAGGUGA ||UCGAGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCUCUG--- ---------- ----uuaggg 3181 u(-gcaa-)g cccga----- ---------- --GAGAG-C| C(GCA)GUGA AUAGGCC-CA 3241 GG|CGACU-- ---GU(UUAG CAAAA)ACAC AGGUCUCUG| CGAAGCC(GU AA------)G 3301 GCGAAGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGCGCUUA 3361 GC-------- (G-UAA)--- --------GC GA-AGGUGCG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGCAAC GA-UCUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUU |AUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCGUGG|A GCU-UUACUG C|AGCCUGAU AUU|GAAUGU UGGUACAGCU UGUACAGGAU 3661 AGGUAGGAGC CUUGGAAA-- CCGGAGC(GC CA)GCUUCGG UGGAGGCAUC -G-GUGGGAU 3721 ACUACC|CUG G-CUGUAUUG ACC-UUCUAA -CCCGCC--- -GCCC(--UU -AUC)-GGGC 3781 GGGGA-GACA GUGUCAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAGG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(U UGGAAA)UCA UUCGCA-GA| 3901 GU(G|UAAAG )GCACAAGGG AGCUUGACUG CGAGAC(CUA CAA)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-CAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACG CACCGCUGGU GUACCAGU|U GUUCU(GC-C A-)AGGGCA- UCGCUGGGUA 4381 GCU-AUGUGC GGACGGGAUA AGUGCU(GAA AGCAUCUA)A GCAUGAAGCC CCCCUC|AAG 4441 AUGAGAUUUC C|CA|UUCC- -(-GCAA-)- -GGAA--GU- AAGA|-UC|C CUGA-(AAGA 4501 UG-A)UCAGG -UUGAUAG|G UCUG|AGGUG -GAAGUGUG- -(GCGA-)-- CACAU|GG-A 4561 GCUG|A|CAG AUACUAAUC- GAUCGA-GG| ACUUAA-CCA U-------|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS B.subtil.J 4759 bp RNA RNA 16-JAN-1998 DEFINITION Bacillis subtilis subsp. operon J. ACCESSION No information KEYWORDS No information. SOURCE Bacillis subtilis subsp. operon J. ORGANISM Bacillis subtilis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: AL009126 BASE COUNT 779 a 658 c 920 g 571 t 1831 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGUUAG- --AAAGGGCG CACGGUGGAU 121 G|CCUUGG|C ACUAGG|AG| CC-GAUGAAG GA|CGGG(AC GA-AC-)A|- CCG-AUAUGC 181 UUCGGG|-GA GCU(G-UA-A GCA-)AGCUU UG-AUC-CGG AGAUU|UCCG AAUGGG(GAA 241 A)CCC|ACCA CUC-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --guaaug)- GAGUGGU-AU CC-AUAUCU( 481 GA-AUUCA-- UA)GGA-UAU -GaG--AAG- GCAGAC|CC- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCG GAGGAAGAGA AAGC(-AAAU --)GCGAU|U CC-CUGAGUA GC(GGCGA)G 601 CGA-A-ACGG GA-UUA-GCC CAAAccaaga -gg------- -----(cuug -)-------- 661 ----ccucuu gggguuguag gacacucugu a--------- ---------- ---------- 721 -----cggag uuacaaagga acg-aggu-a gauGAAgagg u-c(u-ggaa a)g-gcccgc 781 |c(aua)ggA GG(UAACAGC )CCUGU-Agu c-aaaacuuc guucucuccu ---------- 841 ---------- ----gagugg auccu---GA GUACGGCGGA A(CACGUG-A AA)UUCCGUC 901 GGAAUCC-GG G-AG(GACCA U)CU-CCC-A AGGCUAA--- -AUACUCCCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-GA GAUCCUGAAA CCGU-GUGCC UACAA-G-UA GUCAGAGCCC --G------- 1081 --------(- ---uuaa--) ---------- -----c-ggg UGAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUC- CCGUGC-AAG GUUAAgca-( -gaaga)-ug 1201 c-GGAGCCGC AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC Gc-------- ---------- 1261 ---------- -----au-ga G-UACGUGGU CGUA-GACCC GAAAC-CAG- GUGA-UCUAC 1321 CCAUGUC|CA GGGUGAAGUU CAGG(UAAC) AC-UGAAUGG AGGCCCGAAC C-CACGCAC( 1381 -GUUGAAAA) GUGCG|GGG- AUGAG-GUGU GGGUAGGGGU (-GAAAU)GC CAAUCGAACC 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCA AGGu---aa| 1501 -gag|UCUUG G|AGGUAG|A GC-ACUGA-U UGGACUA-GG |-GGCCC(cu acc)GGGUUA 1561 CCGAAUUCAG -UCAAACUCC GAA-UG-|CC A-AUG-a--- cuua----u| CCU-UGGGAG 1621 UCAGAC--UG C-GAGU(GAU AAG)AUCCGU -AGUC-GAAA GGG(-AAACA G-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAGUA-UACG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 AGUUGCUUA- GACAACCAGG AUGUUGGC(U UAGAAGCA)G CCAC-CAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CGA GU-GAC-UC- -UGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACGUA-U|C| ACCGAAGCU| GCGG|acugu uc-----(uu c--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --gaacagu- GG-UAGGAGA G|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCUG-U 2341 GAAGCCA-G- A-CC(-GGAA -)GGA--CUG GUGG|AGCGC U-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGA-AA GAGGGG(UGA GAAU)CCCCU C|CACC-GAA UGCCUAAGGU 2461 UUCCUG-AGG AAGG-(CUCG U)CC|G-CUC AGGGUUAGU| CGG|G-ACCU AAGCCGAGGC 2521 C(GAAA)-G- GCGU-AGGCG AUGG-ACAAC AGG-(UU-GA UAUU)C-CUG U|AC|ca-c- 2581 cuccuc-acc --auu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---ugagcaa u------ggg g--gga-cgc aggaggaua- gggu-aa|gc g-cgg(uau- 2761 -uggau-au- --)cc-gcgu -|ccaa---- ---------- ---gcag-uu aggc------ 2821 --uggga-aa uagg(ca-aa -u-)cc|g-- uuucccauaa ---------- ggcu-gagcu 2881 gug-augg|c ga-|------ -------gcg a(aauauag) -uagc----- ------gaag 2941 --uuccu-ga uucc-aca-| cugccaagaa a-agccuc-u a-gcga---- ------gg-u 3001 -gagag--gu g|c|CCGUAC CGCAAACC(G ACACA)GG|U AG-GCGAGG- A-(GAGAA)U 3061 CCUAAGGUGA ||UCGAGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCUCUG--- ---------- ----uuaggg 3181 u(-gcaa-)g cccga----- ---------- --GAGAG-C| C(GCA)GUGA AUAGGCC-CA 3241 GG|CGACU-- ---GU(UUAG CAAAA)ACAC AGGUCUCUG| CGAAGCC(GU AA------)G 3301 GCGAAGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGCGCUUA 3361 GC-------- (G-UAA)--- --------GC GA-AGGUGCG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGCAAC GA-UCUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUU |AUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCGUGG|A GCU-UUACUG C|AGCCUGAU AUU|GAAUGU UGGUACAGCU UGUACAGGAU 3661 AGGUAGGAGC CUUGGAAA-- CCGGAGC(GC CA)GCUUCGG UGGAGGCAUC -G-GUGGGAU 3721 ACUACC|CUG G-CUGUAUUG ACC-UUCUAA -CCCGCC--- -GCCC(--UU -AUC)-GGGC 3781 GGGGA-GACA GUGUCAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAGG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(U UGGAAA)UCA UUCGCA-GA| 3901 GU(G|UAAAG )GCACAAGGG AGCUUGACUG CGAGAC(CUA CAA)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-CAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACG CACCGCUGGU GUACCAGU|U GUUCU(GC-C A-)AGGGCA- UCGCUGGGUA 4381 GCU-AUGUGC GGACGGGAUA AGUGCU(GAA AGCAUCUA)A GCAUGAAGCC CCCCUC|AAG 4441 AUGAGAUUUC C|CA|UUCC- -(-GCAA-)- -GGAA--GU- AAGA|-UC|C CUGA-(AAGA 4501 UG-A)UCAGG -UUGAUAG|G UCUG|AGGUG -GAAGUGUG- -(GCGA-)-- CACAU|GG-A 4561 GCUG|A|CAG AUACUAAUC- GAUCGA-GG| ACUUAA-CCA U-------|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS B.subtil.I 4759 bp RNA RNA 16-JAN-1998 DEFINITION Bacillis subtilis subsp. operon I. ACCESSION No information KEYWORDS No information. SOURCE Bacillis subtilis subsp. operon I. ORGANISM Bacillis subtilis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: AL009126 BASE COUNT 777 a 657 c 920 g 572 t 1833 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGUUAG- --AAAGGGCG CACGGUGGAU 121 G|CCUUGG|C ACUAGG|AG| CC-GAUGAAG GA|CGGG(AC GA-AC-)A|- CCG-AUAUGC 181 UUCGGG|-GA GCU(G-UA-A GCA-)AGCUU UG-AUC-CGG AGAUU|UCCG AAUGGG(GAA 241 A)CCC|ACCA CUC-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --guaaug)- GAGUGGU-AU CC-AUAUCU( 481 GA-AUUCA-- UA)GGA-UAU -GaG--AAG- GCAGAC|CC- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCG GAGGAAGAGA AAGC(-AAAU --)GCGAU|U CC-CUGAGUA GC(GGCGA)G 601 CGA-A-ACGG GA-UUA-GCC CAAAccaaga -gg------- -----(cuug -)-------- 661 ----ccuc-u gggguuguag gacacucugu a--------- ---------- ---------- 721 -----cggag uuacaaagga acg-aggu-a gauGAAgagg u-c(u-ggaa a)g-gcccgc 781 |c(aua)ggA GG(UAACAGC )CCUGU-Agu c-aaaacuuc guucucuccu ---------- 841 ---------- ----gagugg auccu---GA GUACGGCGGA A(CACGUG-A AA)UUCCGUC 901 GGAAUCC-GG G-AG(GACCA U)CU-CCC-A AGGCUAA--- -AUACUCCCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-GA GAUCCUGAAA CCGU-GUGCC UACAA-G-UA GUCAGAGCCC --G------- 1081 --------(- ---uuaa--) ---------- -----c-ggg UGAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUC- UCGUGC-AAG GUUAAgca-( -gaaga)-ug 1201 c-GGAGCCGC AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC Gc-------- ---------- 1261 ---------- -----au-ga G-UACGUGGU CGUA-GACCC GAAAC-CAG- GUGA-UCUAC 1321 CCAUGUC|CA GGGUGAAGUU CAGG(UAAC) AC-UGAAUGG AGGCCCGAAC C-CACGCAC( 1381 -GUUGAAAA) GUGCG|GGG- AUGAG-GUGU GGGUAGGGGU (-GAAAU)GC CAAUCGAGCC 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCA AGGu---aa| 1501 -gag|UCUUG G|AGGUAG|A GC-ACUGA-U UGGACUA-GG |-GGCCC(cu acc)GGGUUA 1561 CCGAAUUCAG -UCAAACUCC GAA-UG-|CC A-AUG-a--- cuua----u| CCU-UGGGAG 1621 UCAGAC--UG C-GAGU(GAU AAG)AUCCGU -AGUC-GAAA GGG(-AAACA G-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAGUA-UACG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 AGUUGCUUA- GACAACCAGG AUGUUGGC(U UAGAAGCA)G CCAC-CAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CGA GU-GAC-UC- -UGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACGUA-U|C| ACCGAAGCU| GCGG|acugu uc-----(uu c--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --gaacagu- GG-UAGGAGA G|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCUG-U 2341 GAAGCCA-G- A-CC(-GGAA -)GGA--CUG GUGG|AGCGC U-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGA-AA GAGGGG(UGA GAAU)CCCCU C|CACC-GAA UGCCUAAGGU 2461 UUCCUG-AGG AAGG-(CUCG U)CC|G-CUC AGGGUUAGU| CGG|G-ACCU AAGCCGAGGC 2521 C(GAAA)-G- GCGU-AGGCG AUGG-ACAAC AGG-(UU-GA UAUU)C-CUG U|AC|ca-c- 2581 cuccuc-acc --auu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---ugagcaa u------ggg g--gga-cgc aggaggaua- gggu-aa|gc g-cgg(uau- 2761 -uggau-au- --)cc-gcgu -|ccaa---- ---------- ---gcag-uu aggc------ 2821 --uggga-aa uagg(ca-aa -u-)cc|g-- uuucccauaa ---------- ggcu-gagcu 2881 gug-augg|c ga-|------ -------gcg a(aauauag) -uagc----- ------gaag 2941 --uuccu-ga uucc-aca-| cugccaagaa a-agccuc-u a-gcga---- ------gg-u 3001 -gagag--gu g|c|CCGUAC CGCAAACC(G ACACA)GG|U AG-GCGAGG- A-(GAGAA)U 3061 CCUAAGGUGA ||UCGAGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCUCUG--- ---------- ----uuaggg 3181 u(-gcaa-)g cccga----- ---------- --GAGAG-C| C(GCA)GUGA AUAGGCC-CA 3241 GG|CGACU-- ---GU(UUAG CAAAA)ACAC AGGUCUCUG| CGAAGCC(GU AA------)G 3301 GCGAAGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGCGCUUA 3361 GC-------- (G-UAA)--- --------GC GA-AGGUGCG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGCAAC GA-UCUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUU |AUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCGUGG|A GCU-UUACUG C|AGCCUGAU AUU|GAAUGU UGGUACAGCU UGUACAGGAU 3661 AGGUAGGAGC CUUGGAAA-- CCGGAGC(GC CA)GCUUCGG UGGAGGCAUC -G-GUGGGAU 3721 ACUACC|CUG G-CUGUAUUG ACC-UUCUAA -CCCGCC--- -GCCC(--UU -AUC)-GGGC 3781 GGGGA-GACA GUUUCAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(U-A-AAGG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(U UGGAAA)UCA UUCGCA-GA| 3901 GU(G|UAAAG )GCACAAGGG AGCUUGACUG CGAGAC(CUA CAA)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-CAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACG CACCGCUGGU GUACCAGU|U GUUCU(GC-C A-)AGGGCA- UCGCUGGGUA 4381 GCU-AUGUGC GGACGGGAUA AGUGCU(GAA AGCAUCUA)A GCAUGAAGCC CCCCUC|AAG 4441 AUGAGAUUUC C|CA|UUCC- -(-GCAA-)- -GGAA--GU- AAGA|-UC|C CUGA-(AAGA 4501 UG-A)UCAGG -UUGAUAG|G UCUG|AGGUG -GAAGUGUG- -(GCGA-)-- CACAU|GG-A 4561 GCUG|A|CAG AUACUAAUC- GAUCGA-GG| ACUUAA-CCA U-------|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS B.subtil.H 4759 bp RNA RNA 16-JAN-1998 DEFINITION Bacillis subtilis subsp. operon H. ACCESSION No information KEYWORDS No information. SOURCE Bacillis subtilis subsp. operon H. ORGANISM Bacillis subtilis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: AL009126 BASE COUNT 779 a 658 c 916 g 571 t 1835 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGUUAG- --AAAGGGCG CACGGUGGAU 121 G|CCUUGG|C ACUAGG|AG| CC-GAUGAAG GA|CGGG(AC GA-AC-)A|- CCG-AUAUGC 181 UUCGGG|-GA GCU(G-UA-A GCA-)AGCUU UG-AUC-CGG AGAUU|UCCG AAUGGG(GAA 241 A)CCC|ACCA CUC-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --guaaug)- GAGUGGU-AU CC-AUAUCU( 481 GA-AUUCA-- UA)GGA-UAU -GaG--AAG- GCAGAC|CC- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCG GAGGAAGAGA AAGC(-AAAU --)GCGAU|U CC-CUGAGUA GC(GGCGA)G 601 CGA-A-ACGG GA-UUA-GCC CAAAccaaga -gg------- -----(cuug -)-------- 661 ----ccucuu gggguuguag gacacucugu a--------- ---------- ---------- 721 -----cggag uuacaaagga acg-aggu-a gauGAAgagg u-c(u-ggaa a)g-gcccgc 781 |c(aua)ggA GG(UAACAGC )CCUGU-Agu c-aaaacuuc guucucuccu ---------- 841 ---------- ----gagugg auccu---GA GUACGGCGGA A(CACGUG-A AA)UUCCGUC 901 GGAAUCC-GG G-AG(GACCA U)CU-CCC-A AGGCUAA--- -AUACUCCCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-GA GAUCCUGAAA CCGU-GUGCC UACAA-G-UA GUCAGAGCCC --G------- 1081 --------(- ---uuaa--) ---------- -----c-ggg UGAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUC- UCGUGC-AAG GUUAAgca-( -gaaga)-ug 1201 c-GGAGCCGC AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC Gc-------- ---------- 1261 ---------- -----au-ga G-UACGUGGU CGUA-GACCC GAAAC-CAG- GUGA-UCUAC 1321 CCAUGUC|CA GGGUGAAGUU CAGG(UAAC) AC-UGAAUGG AGGCCCGAAC C-CACGCAC( 1381 -GUUGAAAA) GUGCG|GGG- AUGAG-GUGU GGGUAGGGGU (-GAAAU)GC CAAUCGAACC 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCA AGGu---aa| 1501 -gag|UCUUG G|AGGUAG|A GC-ACUGA-U UGGACUA-GG |-GGCCC(cu acc)GGGUUA 1561 CCGAAUUCAG -UCAAACUCC GAA-UG-|CC A-AUG-a--- cuua----u| CCU-UGGGAG 1621 UCAGAC--UG C-GAGU(GAU AAG)AUCCGU -AGUC-GAAA GGG(-AAACA G-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAGUA-UACG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 AGUUGCUUA- GACAACCAGG AUGUUGGC(U UAGAAGCA)G CCAC-CAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CGA GU-GAC-UC- -UGG|CCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACGUA-U|C| ACCGAAGCU| GCGG|acugu uc-----(uu c--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --gaacagu- GG-UAGGAGA G|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCUG-U 2341 GAAGCCA-G- A-CC(-GGAA -)GGA--CUG GUGG|AGCGC U-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGA-AA GAGGGG(UGA GAAU)CCCCU C|CACC-GAA UGCCUAAGGU 2461 UUCCUG-AGG AAGG-(CUCG U)CC|G-CUC AGGGUUAGU| CGG|G-ACCU AAGCCGAGGC 2521 C(GAAA)-G- GCGU-AGGCG AUGG-ACAAC AGG-(UU-GA UAUU)C-CUG U|AC|ca-c- 2581 cuccuc-acc --auu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---ugagcaa u------ggg g--gga-cgc aggaggaua- gggu-aa|gc g-cgg(uau- 2761 -uggau-au- --)cc-gcgu -|ccaa---- ---------- ---gcag-uu aggc------ 2821 --uggga-aa uagg(ca-aa -u-)cc|g-- uuucccauaa ---------- ggcu-gagcu 2881 gug-augg|c ga-|------ -------gcg a(aauauag) -uagc----- ------gaag 2941 --uuccu-ga uucc-aca-| cugccaagaa a-agc-uc-u a-gcga---- ------gg-u 3001 -gagag--gu g|c|CCGUAC CGCAAACC(G ACACA)GG|U AG-GCGAGG- A-(GAGAA)U 3061 CCUAAGGUGA ||UCGAGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCCCUG--- ---------- ----uuaggg 3181 u(-gcaa-)- cccga----- ---------- --GAGAA-C| C(GCA)GUGA AUAGGCCcCA 3241 GG|CGACU-- ---GU(UUAG CAAAA)-CAC AGGUCUCUG| CGAAGCC(GU AA------)G 3301 GCGAAGU-AU A-GGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGCGCUUA 3361 GC-------- (G-UAA)--- --------GC GA-AGGUGCG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGCAAC GA-UCUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUU |AUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCGUGG|A GCU-UUACUG C|AGCCUGAU AUU|GAAUGU UGGUACAGCU UGUACAGGAU 3661 AGGUAGGAGC CUUGGAAA-- CCGGAGC(GC CA)-CUUCGG UGGAGGCAUC -G-GUGGGAU 3721 ACUACC|CUG G-CUGUAUUG ACC-UUCUAA -CCCGCC--- -GCCC(--UU -AUC)-GGGC 3781 GGGGA-GACA GUGUCAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAGG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(U UGGAAA)UCA UUCGCA-GA| 3901 GU(G|UAAAG )GCACAAGGG AGCUUGACUG CGAGAC(CUA CAA)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-CAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACG CACCGCUGGU GUACCAGU|U GUUCU(GC-C A-)AGGGCA- UCGCUGGGUA 4381 GCU-AUGUGC GGACGGGAUA AGUGCU(GAA AGCAUCUA)A GCAUGAAGCC CCCCUC|AAG 4441 AUGAGAUUUC C|CA|UUCC- -(-GCAA-)- -GGAA--GU- AAGA|-UC|C CUGA-(AAGA 4501 UG-A)UCAGG -UUGAUAG|G UCUG|AGGUG -GAAGUGUG- -(GCGA-)-- CACAU|GG-A 4561 GCUG|A|CAG AUACUAAUC- GAUCGA-GG| ACUUAA-CCA U-------|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS B.subtil.G 4759 bp RNA RNA 16-JAN-1998 DEFINITION Bacillis subtilis subsp. operon G. ACCESSION No information KEYWORDS No information. SOURCE Bacillis subtilis subsp. operon G. ORGANISM Bacillis subtilis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: AL009126 BASE COUNT 779 a 656 c 921 g 572 t 1831 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGUUAG- --AAAGGGCG CACGGUGGAU 121 G|CCUUGG|C ACUAGG|AG| CC-GAUGAAG GA|CGGG(AC GA-AC-)A|- CCG-AUAUGC 181 UUCGGG|-GA GCU(G-UA-A GCA-)AGCUU UG-AUC-CGG AGAUU|UCCG AAUGGG(GAA 241 A)CCC|ACCA CUC-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --guaaug)- GAGUGGU-AU CC-AUAUCU( 481 GA-AUUCA-- UA)GGA-UAU -GaG--AAG- GCAGAC|CC- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCG GAGGAAGAGA AAGC(-AAAU --)GCGAU|U CC-CUGAGUA GC(GGCGA)G 601 CGA-A-ACGG GA-UUA-GCC CAAAccaaga -gg------- -----(cuug -)-------- 661 ----ccucuu gggguuguag gacacucugu a--------- ---------- ---------- 721 -----cggag uuacaaagga acg-aggu-a gauGAAgagg u-c(u-ggaa a)g-gcccgc 781 |c(aua)ggA GG(UAACAGC )CCUGU-Agu c-aaaacuuc guucucuccu ---------- 841 ---------- ----gagugg auccu---GA GUACGGCGGA A(CACGUG-A AA)UUCCGUC 901 GGAAUCC-GG G-AG(GACCA U)CU-CCC-A AGGCUAA--- -AUACUCCCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-GA GAUCCUGAAA CCGU-GUGCC UACAA-G-UA GUCAGAGCCC --G------- 1081 --------(- ---uuaa--) ---------- -----c-ggg UGAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUC- UCGUGC-AAG GUUAAgca-( -gaaga)-ug 1201 c-GGAGCCGC AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC Gc-------- ---------- 1261 ---------- -----au-ga G-UACGUGGU CGUA-GACCC GAAAC-CAG- GUGA-UCUAC 1321 CCAUGUC|CA GGGUGAAGUU CAGG(UAAC) AC-UGAAUGG AGGCCCGAAC C-CACGCAC( 1381 -GUUGAAAA) GUGCG|GGG- AUGAG-GUGU GGGUAGGGGU (-GAAAU)GC CAAUCGAACC 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCA AGGu---aa| 1501 -gag|UCUUG G|AGGUAG|A GC-ACUGA-U UGGACUA-GG |-GGCCC(cu acc)GGGUUA 1561 CCGAAUUCAG -UCAAACUCC GAA-UG-|CC A-AUG-a--- cuua----u| CCU-UGGGAG 1621 UCAGAC--UG C-GAGU(GAU AAG)AUCCGU -AGUC-GAAA GGG(-AAACA G-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAGUA-UACG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 AGUUGCUUA- GACAACCAGG AUGUUGGC(U UAGAAGCA)G CCAC-CAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CGA GU-GAC-UC- -UGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACGUA-U|C| ACCGAAGCU| GCGG|acugu uc-----(uu c--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --gaacagu- GG-UAGGAGA G|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCUG-U 2341 GAAGCCA-G- A-CC(-GGAA -)GGA--CUG GUGG|AGCGC U-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGA-AA GAGGGG(UGA GAAU)CCCCU C|CACC-GAA UGCCUAAGGU 2461 UUCCUG-AGG AAGG-(CUCG U)CC|G-CUC AGGGUUAGU| CGG|G-ACCU AAGCCGAGGC 2521 C(GAAA)-G- GCGU-AGGCG AUGG-ACAAC AGG-(UU-GA UAUU)C-CUG U|AC|ca-c- 2581 cuccuc-acc --auu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---ugagcaa u------ggg g--gga-cgc aggaggaua- gggu-aa|gc g-cgg(uau- 2761 -uggau-au- --)cc-gcgu -|ccaa---- ---------- ---gcag-uu aggc------ 2821 --uggga-aa uagg(ga-aa -u-)cc|g-- uuucccauaa ---------- ggcu-gagcu 2881 gug-augg|c ga-|------ -------gcg a(aauauag) -uagc----- ------gaag 2941 --uuccu-ga uucc-aca-| cugccaagaa a-agccuc-u a-gcga---- ------gg-u 3001 -gagag--gu g|c|CCGUAC CGCAAACC(G ACACA)GG|U AG-GCGAGG- A-(GAGAA)U 3061 CCUAAGGUGA ||UCGAGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCUCUG--- ---------- ----uuaggg 3181 u(-gcaa-)g cccga----- ---------- --GAGAG-C| C(GCA)GUGA AUAGGCC-CA 3241 GG|CGACU-- ---GU(UUAG CAAAA)ACAC AGGUCUCUG| CGAAGCC(GU AA------)G 3301 GCGAAGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGCGCUUA 3361 GC-------- (G-UAA)--- --------GC GA-AGGUGCG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGCAAC GA-UCUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUU |AUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCGUGG|A GCU-UUACUG C|AGCCUGAU AUU|GAAUGU UGGUACAGCU UGUACAGGAU 3661 AGGUAGGAGC CUUGGAAA-- CCGGAGC(GC CA)GCUUCGG UGGAGGCAUC -G-GUGGGAU 3721 ACUACC|CUG G-CUGUAUUG ACC-UUCUAA -CCCGCC--- -GCCC(--UU -AUC)-GGGC 3781 GGGGA-GACA GUGUCAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAGG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(U UGGAAA)UCA UUCGCA-GA| 3901 GU(G|UAAAG )GCACAAGGG AGCUUGACUG CGAGAC(CUA CAA)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-CAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACG CACCGCUGGU GUACCAGU|U GUUCU(GC-C A-)AGGGCA- UCGCUGGGUA 4381 GCU-AUGUGC GGACGGGAUA AGUGCU(GAA AGCAUCUA)A GCAUGAAGCC CCCCUC|AAG 4441 AUGAGAUUUC C|CA|UUCC- -(-GCAA-)- -GGAA--GU- AAGA|-UC|C CUGA-(AAGA 4501 UG-A)UCAGG -UUGAUAG|G UCUG|AGGUG -GAAGUGUG- -(GCGA-)-- CACAU|GG-A 4561 GCUG|A|CAG AUACUAAUC- GAUCGA-GG| ACUUAA-CCA U-------|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS B.subtil.E 4759 bp RNA RNA 16-JAN-1998 DEFINITION Bacillis subtilis subsp. operon E. ACCESSION No information KEYWORDS No information. SOURCE Bacillis subtilis subsp. operon E. ORGANISM Bacillis subtilis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: AL009126 BASE COUNT 778 a 658 c 921 g 571 t 1831 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGUUAG- --AAAGGGCG CGCGGUGGAU 121 G|CCUUGG|C ACUAGG|AG| CC-GAUGAAG GA|CGGG(AC GA-AC-)A|- CCG-AUAUGC 181 UUCGGG|-GA GCU(G-UA-A GCA-)AGCUU UG-AUC-CGG AGAUU|UCCG AAUGGG(GAA 241 A)CCC|ACCA CUC-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --guaaug)- GAGUGGU-AU CC-AUAUCU( 481 GA-AUUCA-- UA)GGA-UAU -GaG--AAG- GCAGAC|CC- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCG GAGGAAGAGA AAGC(-AAAU --)GCGAU|U CC-CUGAGUA GC(GGCGA)G 601 CGA-A-ACGG GA-UUA-GCC CAAAccaaga -gg------- -----(cuug -)-------- 661 ----ccucuu gggguuguag gacacucugu a--------- ---------- ---------- 721 -----cggag uuacaaagga acg-aggu-a gauGAAgagg u-c(u-ggaa a)g-gcccgc 781 |c(aua)ggA GG(UAACAGC )CCUGU-Agu c-aaaacuuc guucucuccu ---------- 841 ---------- ----gagugg auccu---GA GUACGGCGGA A(CACGUG-A AA)UUCCGUC 901 GGAAUCC-GG G-AG(GACCA U)CU-CCC-A AGGCUAA--- -AUACUCCCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-GA GAUCCUGAAA CCGU-GUGCC UACAA-G-UA GUCAGAGCCC --G------- 1081 --------(- ---uuaa--) ---------- -----c-ggg UGAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUC- CCGUGC-AAG GUUAAgca-( -gaaga)-ug 1201 c-GGAGCCGC AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC Gc-------- ---------- 1261 ---------- -----au-ga G-UACGUGGU CGUA-GACCC GAAAC-CAG- GUGA-UCUAC 1321 CCAUGUC|CA GGGUGAAGUU CAGG(UAAC) AC-UGAAUGG AGGCCCGAAC C-CACGCAC( 1381 -GUUGAAAA) GUGCG|GGG- AUGAG-GUGU GGGUAGGGGU (-GAAAU)GC CAAUCGAACC 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCA AGGu---aa| 1501 -gag|UCUUG G|AGGUAG|A GC-ACUGA-U UGGACUA-GG |-GGCCC(cu acc)GGGUUA 1561 CCGAAUUCAG -UCAAACUCC GAA-UG-|CC A-AUG-a--- cuua----u| CCU-UGGGAG 1621 UCAGAC--UG C-GAGU(GAU AAG)AUCCGU -AGUC-GAAA GGG(-AAACA G-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAGUA-UACG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 AGUUGCUUA- GACAACCAGG AUGUUGGC(U UAGAAGCA)G CCAC-CAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CGA GU-GAC-UC- -UGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACGUA-U|C| ACCGAAGCU| GCGG|acugu uc-----(uu c--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --gaacagu- GG-UAGGAGA G|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCUG-U 2341 GAAGCCA-G- A-CC(-GGAA -)GGA--CUG GUGG|AGCGC U-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGA-AA GAGGGG(UGA GAAU)CCCCU C|CACC-GAA UGCCUAAGGU 2461 UUCCUG-AGG AAGG-(CUCG U)CC|G-CUC AGGGUUAGU| CGG|G-ACCU AAGCCGAGGC 2521 C(GAAA)-G- GCGU-AGGCG AUGG-ACAAC AGG-(UU-GA UAUU)C-CUG U|AC|ca-c- 2581 cuccuc-acc --auu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---ugagcaa u------ggg g--gga-cgc aggaggaua- gggu-aa|gc g-cgg(uau- 2761 -uggau-au- --)cc-gcgu -|ccaa---- ---------- ---gcag-uu aggc------ 2821 --uggga-aa uagg(ca-aa -u-)cc|g-- uuucccauaa ---------- ggcu-gagcu 2881 gug-augg|c ga-|------ -------gcg a(aauauag) -uagc----- ------gaag 2941 --uuccu-ga uucc-aca-| cugccaagaa a-agccuc-u a-gcga---- ------gg-u 3001 -gagag--gu g|c|CCGUAC CGCAAACC(G ACACA)GG|U AG-GCGAGG- A-(GAGAA)U 3061 CCUAAGGUGA ||UCGAGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCUCUG--- ---------- ----uuaggg 3181 u(-gcaa-)g cccga----- ---------- --GAGAG-C| C(GCA)GUGA AUAGGCC-CA 3241 GG|CGACU-- ---GU(UUAG CAAAA)ACAC AGGUCUCUG| CGAAGCC(GU AA------)G 3301 GCGAAGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGCGCUUA 3361 GC-------- (G-UAA)--- --------GC GA-AGGUGCG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGCAAC GA-UCUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUU |AUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCGUGG|A GCU-UUACUG C|AGCCUGAU AUU|GAAUGU UGGUACAGCU UGUACAGGAU 3661 AGGUAGGAGC CUUGGAAA-- CCGGAGC(GC CA)GCUUCGG UGGAGGCAUC -G-GUGGGAU 3721 ACUACC|CUG G-CUGUAUUG ACC-UUCUAA -CCCGCC--- -GCCC(--UU -AUC)-GGGC 3781 GGGGA-GACA GUGUCAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAGG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(U UGGAAA)UCA UUCGCA-GA| 3901 GU(G|UAAAG )GCACAAGGG AGCUUGACUG CGAGAC(CUA CAA)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-CAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACG CACCGCUGGU GUACCAGU|U GUUCU(GC-C A-)AGGGCA- UCGCUGGGUA 4381 GCU-AUGUGC GGACGGGAUA AGUGCU(GAA AGCAUCUA)A GCAUGAAGCC CCCCUC|AAG 4441 AUGAGAUUUC C|CA|UUCC- -(-GCAA-)- -GGAA--GU- AAGA|-UC|C CUGA-(AAGA 4501 UG-A)UCAGG -UUGAUAG|G UCUG|AGGUG -GAAGUGUG- -(GCGA-)-- CACAU|GG-A 4561 GCUG|A|CAG AUACUAAUC- GAUCGA-GG| ACUUAA-CCA U-------|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS B.subtil.D 4759 bp RNA RNA 16-JAN-1998 DEFINITION Bacillis subtilis subsp. operon D. ACCESSION No information KEYWORDS No information. SOURCE Bacillis subtilis subsp. operon D. ORGANISM Bacillis subtilis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: AL009126 BASE COUNT 778 a 658 c 921 g 572 t 1830 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGUUAG- --AAAGGGCG CACGGUGGAU 121 G|CCUUGG|C ACUAGG|AG| CC-GAUGAAG GA|CGGG(AC GA-AC-)A|- CCG-AUAUGC 181 UUCGGG|-GA GCU(G-UA-A GCA-)AGCUU UG-AUC-CGG AGAUU|UCCG AAUGGG(GAA 241 A)CCC|ACCA CUC-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --guaaug)- GAGUGGU-AU CC-AUAUCU( 481 GA-AUUCA-- UA)GGA-UAU -GaG--AAG- GCAGAC|CC- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCG GAGGAAGAGA AAGC(-AAAU --)GCGAU|U CC-CUGAGUA GC(GGCGA)G 601 CGA-A-ACGG GA-UUA-GCC CAAAccaaga -gg------- -----(cuug -)-------- 661 ----ccucuu gggguuguag gacacucugu a--------- ---------- ---------- 721 -----cggag uuacaaaaga acg-aggu-a gauGAAgagg u-c(u-ggaa a)gggcccgc 781 |c(aua)ggA GG(UAACAGC )CCUGU-Agu c-aaaacuuc guucucuccu ---------- 841 ---------- ----gagugg auccu---GA GUACGGCGGA A(CACGUG-A AA)UUCCGUC 901 GGAAUCC-GG G-AG(GACCA U)CU-CCC-A AGGCUAA--- -AUACUCCCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-GA GAUCCUGAAA CCGU-GUGCC UACAA-G-UA GUCAGAGCCC --G------- 1081 --------(- ---uuaa--) ---------- -----c-ggg UGAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUC- CCGUGC-AAG GUUAAgca-( -gaaga)-ug 1201 c-GGAGCCGC AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC Gc-------- ---------- 1261 ---------- -----au-ga G-UACGUGGU CGUA-GACCC GAAAC-CAG- GUGA-UCUAC 1321 CCAUGUC|CA GGGUGAAGUU CAGG(UAAC) AC-UGAAUGG AGGCCCGAAC C-CACGCAC( 1381 -GUUGAAAA) GUGCG|GGG- AUGAG-GUGU GGGUAGGGGU (-GAAAU)GC CAAUCGAACC 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCA AGGu---aa| 1501 -gag|UCUUG G|AGGUAG|A GC-ACUGA-U UGGACUA-GG |-GGCCC(cu acc)GGGUUA 1561 CCGAAUUCAG -UCAAACUCC GAA-UG-|CC A-AUG-a--- cuua----u| CCU-UGGGAG 1621 UCAGAC--UG C-GAGU(GAU AAG)AUCCGU -AGUC-GAAA GGG(-AAACA G-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAGUA-UACG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 AGUUGCUUA- GACAACCAGG AUGUUGGC(U UAGAAGCA)G CCAC-CAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CGA GU-GAC-UC- -UGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACGUA-U|C| ACCGAAGCU| GCGG|acugu uc-----(uu c--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --gaacagu- GG-UAGGAGA G|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCUG-U 2341 GAAGCCA-G- A-CC(-GGAA -)GGA--CUG GUGG|AGCGC U-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGA-AA GAGGGG(UGA GAAU)CCCCU C|CACC-GAA UGCCUAAGGU 2461 UUCCUG-AGG AAGG-(CUCG U)CC|G-CUC AGGGUUAGU| CGG|G-ACCU AAGCCGAGGC 2521 C(GAAA)-G- GCGU-AGGCG AUGG-ACAAC AGG-(UU-GA UAUU)C-CUG U|AC|ca-c- 2581 cuccuc-acc --auu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---ugagcaa u------ggg g--gga-cgc aggaggaua- gggu-aa|gc g-cgg(uau- 2761 -uggau-au- --)cc-gcgu -|ccaa---- ---------- ---gcag-uu aggc------ 2821 --uggga-aa uagg(ca-aa -u-)cc|g-- uuucccauaa ---------- ggcu-gagcu 2881 gug-augg|c ga-|------ -------gcg a(aauauag) -uagc----- ------gaag 2941 --uuccu-ga uucc-aca-| cugccaagaa a-agccuc-u a-gcga---- ------gg-u 3001 -gagag--gu g|c|CCGUAC CGCAAACC(G UCACA)GG|U AG-GCGAGG- A-(GAGAA)U 3061 CCUAAGGUGA ||UCGAGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCUCUG--- ---------- ----uuaggg 3181 u(-gcaa-)g cccga----- ---------- --GAGAG-C| C(GCA)GUGA AUAGGCC-CA 3241 GG|CGACU-- ---GU(UUAG CAAAA)ACAC AGGUCUCUG| CGAAGCC(GU AA------)G 3301 GCGAAGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGCGCUUA 3361 GC-------- (G-UAA)--- --------GC GA-AGGUGCG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGCAAC GA-UCUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUU |AUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCGUGG|A GCU-UUACUG C|AGCCUGAU AUU|GAAUGU UGGUACAGCU UGUACAGGAU 3661 AGGUAGGAGC CUUGGAAA-- CCGGAGC(GC CA)GCUUCGG UGGAGGCAUC -G-GUGGGAU 3721 ACUACC|CUG G-CUGUAUUG ACC-UUCUAA -CCCGCC--- -GCCC(--UU -AUC)-GGGC 3781 GGGGA-GACA GUGUCAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAGG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(U UGGAAA)UCA UUCGCA-GA| 3901 GU(G|UAAAG )GCACAAGGG AGCUUGACUG CGAGAC(CUA CAA)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-CAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACG CACCGCUGGU GUACCAGU|U GUUCU(GC-C A-)AGGGCA- UCGCUGGGUA 4381 GCU-AUGUGC GGACGGGAUA AGUGCU(GAA AGCAUCUA)A GCAUGAAGCC CCCCUC|AAG 4441 AUGAGAUUUC C|CA|UUCC- -(-GCAA-)- -GGAA--GU- AAGA|-UC|C CUGA-(AAGA 4501 UG-A)UCAGG -UUGAUAG|G UCUG|AGGUG -GAAGUGUG- -(GCGA-)-- CACAU|GG-A 4561 GCUG|A|CAG AUACUAAUC- GAUCGA-GG| GCUUAA-CCA U-------|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS B.subtil.B 4759 bp RNA RNA 16-JAN-1998 DEFINITION Bacillis subtilis subsp. operon B. ACCESSION No information KEYWORDS No information. SOURCE Bacillis subtilis subsp. operon B. ORGANISM Bacillis subtilis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: AL009126 BASE COUNT 778 a 661 c 916 g 572 t 1832 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGUUAG- --AAAGGGCG CACGGUGGAU 121 G|CCUUGG|C ACUAGG|AG| CC-GAUGAAG GA|CGGG(AC GA-AC-)A|- CCG-AUAUGC 181 UUCGGG|-GA GCU(G-UA-A GCA-)AGCUU UG-AUC-CGG AGAUU|UCCG AAUGGG(GAA 241 A)CCC|ACCA CUC-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --guaaug)- GAGUGGU-AU CC-AUAUCU( 481 GA-AUUCA-- UA)GGA-UAU -GaG--AAG- GCAGAC|CC- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCG GAG-AAGAGA AAGC(-AAAU --)GCGAU|U CC-CUGAGUA GC(GGCGA)C 601 GAA-C-ACGG GA-UCA-GCC CAAAccaaga -gg------- -----(cuug -)-------- 661 ----ccuc-u gugguuguag gacacucugu a--------- ---------- ---------- 721 -----cggag uuacaaaaga acg-aggu-a gauGAAgagg u-c(u-ggaa a)gggcccgc 781 |c(aua)ggA GG(UAACAGC )CCUGU-Agu c-aaaacuuc guucucuccu ---------- 841 ---------- ----gagugg auccu---GA GUACGGCGGA A(CACGUG-A AA)UUCCGUC 901 GGAAUCC-GG G-AG(GACCA U)CU-CCC-A AGGCUAA--- -AUACUCCCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-GA GAUCCUGAAA CCGU-GUGCC UACAA-G-UA GUCAGAGCCC --G------- 1081 --------(- ---uuaa--) ---------- -----c-gg- UGAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUC- CCGUGC-AAG GUUAAgca-( -gaaga)-ug 1201 c-GGAGCCGC AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC Gc-------- ---------- 1261 ---------- -----au-ga G-UACGUGGU CGUA-GACCC GAAAC-CAG- GUGA-UCUAC 1321 CCAUGUC|CA GGGUGAAGUU CAGG(UAAC) AC-UGAAUGG AGGCCCGAAC C-CACGCAC( 1381 -GUUGAAAA) GUGCG|GGG- AUGAG-GUGU GGGUAGGGGU (-GAAAU)GC CAAUCGAACC 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCA AGGu---aa| 1501 -gag|UCUUG G|AGGUAG|A GC-ACUGA-U UGGACUA-GG |-GGCCC(uc acc)GGGUUA 1561 CCGAAUUCAG -UCAAACUCC GAA-UG-|CC A-AUG-a--- cuua----u| CCU-UGGGAG 1621 UCAGAC--UG C-GAGU(GAU AAG)AUCCGU -AGUC-GAAA GGG(-AAACA G-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAGUA-UACG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 AGUUGCUUA- GACAACCAGG AUGUUGGC(U UAGAAGCA)G CCAC-CAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CGA GU-GAC-UC- -UGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACGUA-U|C| ACCGAAGCU| GCGG|acugu uc-----(uu c--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --gaacagu- GG-UAGGAGA G|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCUG-U 2341 GAAGCCA-G- A-CC(-GGAA -)GGA--CUG GUGG|ACGGC U-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGAAAA GAGGGG(UGA GAAU)-CCCU C|CACC-GAA UGCCUAAGGG 2461 UUCCUG-AGG AAGG-(CUCG U)CC|G-CUC AGGGUUAGU| CGG|G-ACCU AAGCCGAGGC 2521 C(GAAA)-G- GCGU-AGGCG AUGG-ACAAC AGG-(UU-GA UAUU)C-CUG U|AC|ca-c- 2581 cuccuc-acc --auu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---ugagcaa u------ggg g--ggu-cgc aggaggaua- gggu-aa|gc g-cgg(uau- 2761 -uggau-au- --)cc-gcgu -|ccaa---- ---------- ---gcag-uu aggc------ 2821 --uggga-aa uagg(ca-aa -u-)cc|g-- uuucccauaa ---------- ggcu-gagcu 2881 gug-augg|c ga-|------ -------gcg a(aauauag) -uagc----- ------gaag 2941 --uuccu-ga uucc-aca-| cugccaagaa a-agccuc-u a-gcga---- ------gg-u 3001 -gagag--gu g|c|CCGUAC CGCAAACC(G UCACA)GG|U AG-GCGAGG- A-(GAGAA)U 3061 CCUAAGGUGA ||UCGAGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCUCUG--- ---------- ----uuaggg 3181 u(-gcaa-)g cccga----- ---------- --GAGAG-C| C(GCA)GUGA AUAGGCC-CA 3241 GG|CGACU-- ---GU(UUAG CAAAA)ACAC AGGUCUCUG| CGAAGCC(GU AA------)G 3301 GCGAAGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGCGCUUA 3361 GC-------- (G-UAA)--- --------GC GA-AGGUGCG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGCAAC GA-UCUGGGC GCUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUU |AUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCGUGG|A GCU-UUACUG C|AGCCUGAU AUU|GAAUGU UGGUACAGCU UGUACAGGAU 3661 AGGUAGGAGC CUUGGAAA-- CCGGAGC(GC CA)GCUUCGG UGGAGGCAUC -G-GUGGGAU 3721 ACUACC|CUG G-CUGUAUUG ACC-UUCUAA -CCCCCC--- -GCCC(--UU -AUC)-GGGC 3781 GGGGA-GACA GUGUCAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAGG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(U UGGAAA)UCA UUCGCA-GA| 3901 GU(G|UAAAG )GCACAAGGG AGCUUGACUG CGAGAC(CUA CAA)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(Gc UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-CUG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACG CACCGCUGGU GUACCAGU|U GUUCU(GC-C A-)AGGGCA- UCGCUGGGUA 4381 GCU-AUGUGC GGACGGGAUA AGUGCU(GAA AGCAUCUA)A GCAUGAAGCC CCCCUC|AAG 4441 AUGAGAUUUC C|CA|UUCC- -(-GCAA-)- -GGAA--GU- AAGA|-UC|C CUGA-(AAGA 4501 UG-A)UCAGG -UUGAUAG|G UCUG|AGGUG -GAAGUGUG- -(GCAA-)-- CACAU|GG-A 4561 GCUG|A|CAG AUACUAAUC- GAUCGA-GG| ACUUAA-CCA U-------|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS B.subtil.A 4759 bp RNA RNA 16-JAN-1998 DEFINITION Bacillus subtilis subsp. operon A. ACCESSION No information KEYWORDS No information. SOURCE Bacillus subtilis subsp. operon A. ORGANISM Bacillus subtilis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: AL009126 BASE COUNT 779 a 659 c 920 g 570 t 1831 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGUUAG- --AAAGGGCG CACGGUGGAU 121 G|CCUUGG|C ACUAGG|AG| CC-GAUGAAG GA|CGGG(AC GA-AC-)A|- CCG-AUAUGC 181 UUCGGG|-GA GCU(G-UA-A GCA-)AGCUU UG-AUC-CGG AGAUU|UCCG AAUGGG(GAA 241 A)CCC|ACCA CUC-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --guaaug)- GAGUGGU-AU CC-AUAUCU( 481 GA-AUUCA-- UA)GGA-UAU -GaG--AAG- GCAGAC|CC- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCG GAGGAAGAGA AAGC(-AAAU --)GCGAU|U CC-CUGAGUA GC(GGCGA)G 601 CGA-A-ACGG GA-UUA-GCC CAAAccaaga -gg------- -----(cuug -)-------- 661 ----ccucuu gggguuguag gacacucugu a--------- ---------- ---------- 721 -----cggag uuacaaagga acg-aggu-a gauGAAgagg u-c(u-ggaa a)g-gcccgc 781 |c(aua)ggA GG(UAACAGC )CCUGU-Agu c-aaaacuuc guucucuccu ---------- 841 ---------- ----gagugg auccu---GA GUACGGCGGA A(CACGUG-A AA)UUCCGUC 901 GGAAUCC-GG G-AG(GACCA U)CU-CCC-A AGGCUAA--- -AUACUCCCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-GA GAUCCUGAAA CCGU-GUGCC UACAA-G-UA GUCAGAGCCC --G------- 1081 --------(- ---uuaa--) ---------- -----c-ggG UGAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUC- CCGUGC-AAG GUUAAgca-( -gaaga)-ug 1201 c-GGAGCCGC AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC Gc-------- ---------- 1261 ---------- -----au-ga G-UACGUGGU CGUA-GACCC GAAAC-CAG- GUGA-UCUAC 1321 CCAUGUC|CA GGGUGAAGUU CAGG(UAAC) AC-UGAAUGG AGGCCCGAAC C-CACGCAC( 1381 -GUUGAAAA) GUGCG|GGG- AUGAG-GUGU GGGUAGGGGU (-GAAAU)GC CAAUCGAACC 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCA AGGu---aa| 1501 -gag|UCUUG G|AGGUAG|A GC-ACUGA-U UGGACUA-GG |-GGCCC(cu acc)GGGUUA 1561 CCGAAUUCAG -UCAAACUCC GAA-UG-|CC A-AUG-a--- cuua----u| CCU-UGGGAG 1621 UCAGAC--UG C-GAGU(GAU AAG)AUCCGU -AGUC-GAAA GGG(-AAACA G-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAGUA-UACG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 AGUUGCUUA- GACAACCAGG AUGUUGGC(U UAGAAGCA)G CCAC-CAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CGA GU-GAC-UC- -UGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACGUA-U|C| ACCGAAGCU| GCGG|acugu uc-----(uu c--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --gaacagu- GG-UAGGAGA G|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCUG-U 2341 GAAGCCA-G- A-CC(-GGAA -)GGA--CUG GUGG|AGCGC U-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGA-AA GAGGGG(UGA GAAU)CCCCU C|CACC-GAA UGCCUAAGGU 2461 UUCCUG-AGG AAGG-(CUCG U)CC|G-CUC AGGGUUAGU| CGG|G-ACCU AAGCCGAGGC 2521 C(GAAA)-G- GCGU-AGGCG AUGG-ACAAC AGG-(UU-GA UAUU)C-CUG U|AC|ca-c- 2581 cuccuc-acc --auu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---ugagcaa u------ggg g--gga-cgc aggaggaua- gggu-aa|gc g-cgg(uau- 2761 -uggau-au- --)cc-gcgu -|ccaa---- ---------- ---gcag-uu aggc------ 2821 --uggga-aa uagg(ca-aa -u-)cc|g-- uuucccauaa ---------- ggcu-gagcu 2881 gug-augg|c ga-|------ -------gcg a(aauauag) -uagc----- ------gaag 2941 --uuccu-ga uucc-aca-| cugccaagaa a-agccuc-u a-gcga---- ------gg-u 3001 -gagag--gu g|c|CCGUAC CGCAAACC(G ACACA)GG|U AG-GCGAGG- A-(GAGAA)U 3061 CCUAAGGUGA ||UCGAGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCUCUG--- ---------- ----uuaggg 3181 u(-gcaa-)g cccga----- ---------- --GAGAG-C| C(GCA)GUGA AUAGGCC-CA 3241 GG|CGACU-- ---GU(UUAG CAAAA)ACAC AGGUCUCUG| CGAAGCC(GU AA------)G 3301 GCGAAGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGCGCUUA 3361 GC-------- (G-UAA)--- --------GC GA-AGGUGCG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGCAAC GA-UCUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUU |AUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCGUGG|A GCU-UUACUG C|AGCCUGAU AUU|GAAUGU UGGUACAGCU UGUACAGGAU 3661 AGGUAGGAGC CUUGGAAA-- CCGGAGC(GC CA)GCUUCGG UGGAGGCAUC -G-GUGGGAU 3721 ACUACC|CUG G-CUGUAUUG ACC-UUCUAA -CCCGCC--- -GCCC(--UU -AUC)-GGGC 3781 GGGGA-GACA GUGUCAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAGG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(U UGGAAA)UCA UUCGCA-GA| 3901 GU(G|UAAAG )GCACAAGGG AGCUUGACUG CGAGAC(CUA CAA)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-CAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACG CACCGCUGGU GUACCAGU|U GUUCU(GC-C A-)AGGGCA- UCGCUGGGUA 4381 GCU-AUGUGC GGACGGGAUA AGUGCU(GAA AGCAUCUA)A GCAUGAAGCC CCCCUC|AAG 4441 AUGAGAUUUC C|CA|UUCC- -(-GCAA-)- -GGAA--GU- AAGA|-UC|C CUGA-(AAGA 4501 UG-A)UCAGG -UUGAUAG|G UCUG|AGGUG -GAAGUGUG- -(GCGA-)-- CACAU|GG-A 4561 GCUG|A|CAG AUACUAAUC- GAUCGA-GG| ACUUAA-CCA C-------|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS B.subti.01 4759 bp RNA RNA ~?~???? DEFINITION Bacillus subtilis. ACCESSION No information KEYWORDS No information. SOURCE Bacillus subtilis. ORGANISM Bacillus subtilis. REFERENCE 1 (bases 1 to 2933) AUTHORS Connors,M.J., Mason,J.M. and Setlow,P. JOURNAL B.subtilis:who:published STANDARD No information REFERENCE 3 (bases 213161 to 218473) AUTHORS Ogasawara,N., Moriya,S., Mazza,P.G. and Yoshikawa,H. TITLE Cloning and nucleotide sequencing of genes for three small, acid-soluble proteins from Bacillus subtilis spores JOURNAL J. Bacteriol. 166 (2), 417-425 (1986) STANDARD No information REFERENCE 3 AUTHORS No information TITLE Nucleotide sequence and organization of dnaB gene and neighbouring genes on the Bacillus subtilis chromosome JOURNAL Nucleic Acids Res. 14 (24), 9989-9999 (1986) STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 4759) Corresponding GenBank entry: K00637,AF008220, Z99119 Phylo:Eubacteria,GM+,lowGC,Bacillus BASE COUNT 778 a 661 c 916 g 572 t 1832 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGUUAG- --AAAGGGCG CACGGUGGAU 121 G|CCUUGG|C ACUAGG|AG| CC-GAUGAAG GA|CGGG(AC GA-AC-)A|- CCG-AUAUGC 181 UUCGGG|-GA GCU(G-UA-A GCA-)AGCUU UG-AUC-CGG AGAUU|UCCG AAUGGG(GAA 241 A)CCC|ACCA CUC-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --guaaug)- GAGUGGU-AU CC-AUAUCU( 481 GA-AUUCA-- UA)GGA-UAU -GaG--AAG- GCAGAC|CC- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCG GAG-AAGAGA AAGC(-AAAU --)GCGAU|U CC-CUGAGUA GC(GGCGA)- 601 CGA-ACACGG GA-UCA-GCC CAAAccaaga -gg------- -----(cuug -)-------- 661 ----ccuc-u gugguuguag gacacucugu a--------- ---------- ---------- 721 -----cggag uuacaaaaga acg-aggu-a gauGAAgagg u-c(u-ggaa a)gggcccgc 781 |c(aua)ggA GG(UAACAGC )CCUGU-Agu c-aaaacuuc guucucuccu ---------- 841 ---------- ----gagugg auccu---GA GUACGGCGGA A(CACGUG-A AA)UUCCGUC 901 GGAAUCC-GG G-AG(GACCA U)CU-CCC-A AGGCUAA--- -AUACUCCCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-GA GAUCCUGAAA CCGU-GUGCC UACAA-G-UA GUCAGAGCCC --g------- 1081 --------(- ---uuaa--) ---------- -----c-g-G UGAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUC- CCGUGC-AAG GUUAAgca-( -gaaga)-ug 1201 c-GGAGCCGC AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC Gc-------- ---------- 1261 ---------- -----au-ga G-UACGUGGU CGUA-GACCC GAAAC-CAG- GUGA-UCUAC 1321 CCAUGUC|CA GGGUGAAGUU CAGG(UAAC) AC-UGAAUGG AGGCCCGAAC C-CACGCAC( 1381 -GUUGAAAA) GUGCG|GGG- AUGAG-GUGU GGGUAGGGGU (-GAAAU)GC CAAUCGAACC 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCA AGGu---aa| 1501 -gag|UCUUG G|AGGUAG|A GC-ACUGA-U UGGACUA-GG |-GGCCC(uc acc)GGGUUA 1561 CCGAAUUCAG -UCAAACUCC GAA-UG-|CC A-AUG-a--- cuua----u| CCU-UGGGAG 1621 UCAGAC--UG C-GAGU(GAU AAG)AUCCGU -AGUC-GAAA GGG(-AAACA G-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAGUA-UACG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 AGUUGCUUA- GACAACCAGG AUGUUGGC(U UAGAAGCA)G CCAC-CAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CGA GU-GAC-UC- -UGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACGUA-U|C| ACCGAAGCU| GCGG|acugu uc-----(uu c--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --gaacagu- GG-UAGGAGA G|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCUG-U 2341 GAAGCCA-G- A-CC(-GGAA -)GGA--CUG GUGG|ACGGC U-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGAAAA GAGGGG(UGA GAAU)-CCCU C|CACC-GAA UGCCUAAGGG 2461 UUCCUG-AGG AAGG-(CUCG U)CC|G-CUC AGGGUUAGU| CGG|G-ACCU AAGCCGAGGC 2521 C(GAAA)-G- GCGU-AGGCG AUGG-ACAAC AGG-(UU-GA UAUU)C-CUG U|AC|ca-c- 2581 cuccuc-acc --auu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---ugagcaa u------ggg g--ggu-cgc aggaggaua- gggu-aa|gc g-cgg(uau- 2761 -uggau-au- --)cc-gcgu -|ccaa---- ---------- ---gcag-uu aggc------ 2821 --uggga-aa uagg(ca-aa -u-)cc|g-- uuucccauaa ---------- ggcu-gagcu 2881 gug-augg|c ga-|------ -------gcg a(aauauag) -uagc----- ------gaag 2941 --uuccu-ga uucc-aca-| cugccaagaa a-agccuc-u a-gcga---- ------gg-u 3001 -gagag--gu g|c|CCGUAC CGCAAACC(G UCACA)GG|U AG-GCGAGG- A-(GAGAA)U 3061 CCUAAGGUGA ||UCGAGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCUCUG--- ---------- ----uuaggg 3181 u(-gcaa-)g cccga----- ---------- --GAGAG-C| C(GCA)GUGA AUAGGCC-CA 3241 GG|CGACU-- ---GU(UUAG CAAAA)ACAC AGGUCUCUG| CGAAGCC(GU AA------)G 3301 GCGAAGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGCGCUUA 3361 GC-------- (G-UAA)--- --------GC GA-AGGUGCG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGCAAC GA-UCUGGGC GCUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUU |AUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCGUGG|A GCU-UUACUG C|AGCCUGAU AUU|GAAUGU UGGUACAGCU UGUACAGGAU 3661 AGGUAGGAGC CUUGGAAA-- CCGGAGC(GC CA)GCUUCGG UGGAGGCAUC -G-GUGGGAU 3721 ACUACC|CUG G-CUGUAUUG ACC-UUCUAA -CCCCCC--- -GCCC(--UU -AUC)-GGGC 3781 GGGGA-GACA GUGUCAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAGG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(U UGGAAA)UCA UUCGCA-GA| 3901 GU(G|UAAAG )GCACAAGGG AGCUUGACUG CGAGAC(CUA CAA)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(Gc UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-CUG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACG CACCGCUGGU GUACCAGU|U GUUCU(GC-C A-)AGGGCA- UCGCUGGGUA 4381 GCU-AUGUGC GGACGGGAUA AGUGCU(GAA AGCAUCUA)A GCAUGAAGCC CCCCUC|AAG 4441 AUGAGAUUUC C|CA|UUCC- -(-GCAA-)- -GGAA--GU- AAGA|-UC|C CUGA-(AAGA 4501 UG-A)UCAGG -UUGAUAG|G UCUG|AGGUG -GAAGUGUG- -(GCAA-)-- CACAU|GG-A 4561 GCUG|A|CAG AUACUAAUC- GAUCGA-GG| ACUUAA-CCA U-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS B.subti.02 4759 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: D11460 ID BACRRNI unannotated; DNA; PRO; 3041 BP. XX AC D11460; XX DT 16-JUL-1992 (Rel. 32, Created) DT 16-JUL-1992 (Rel. 32, Last updated, Version 1) XX DE B. subtilis gene for 23S rRNA and 5S rRNA, partial sequence. XX KW 23S ribosomal RNA; 23S rRNA; 5S ribosomal RNA; 5S rRNA; KW rrnI operon. XX OS Bacillus subtilis OC Prokaryota; Bacteria; Firmicutes; Endospore-forming rods and cocci; OC Bacillaceae; Bacillus. XX RN [1] RP 1-3041 RA Sutherland K.J., Kudo T., Horikoshi K.; RT ; RL Unpublished. XX RN [2] RA Wawrousek E.F., Hansen N.J.; RT "Structure and organization of a cluster of six tRNA genes in the RT space between Tandem ribosomal RNA gene sets in Bacillus RT subtilis"; RL J. Biol. Chem. 258:291-298(1992). XX CC These data kindly submitted in computer readable form by: Toshiaki CC Kudo Riken Institute, Microbiology 2-1 Hirosawa, Wako Saitama CC 351-01 Japan Phone: 0484-62-1111 x3443 Email: CC tkudo@rkna50.riken.go.jp Fax: 0484-62-4672 XX FH Key Location/Qualifiers FH XX SQ Sequence 3041 BP; 803 A; 683 C; 935 G; 620 T; 0 other; BASE COUNT 753 a 639 c 885 g 556 t 1926 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------nn nnnnnnnnn- --nnnnnnnn nnnnnnnnnn 121 n|nnnnnn|n nnnnnn|nn| nn-nnnnnnn nn|nnnn(nn nn-nn-)n|- nnn-nnnnnn 181 nnnnnn|-nn nnn(n-nn-n nnA-)AGCUU UG-AUC-CGG AGAUU|UCCG AAUGGG(GAA 241 A)CCC|ACCA CUC-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --guaaug)- GAGUGGU-AU CC-AUAUCU( 481 GA-AUUCA-- UA)GGA-UAU -GAG--AAG- GCAGAC|CC- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCG GAGGAAGAGA AAGC(-AAAU --)GCGAU|U CC-CUGAGUA GC(GGCGA)G 601 CGA-A-ACGG GA-UUA-GCC CAAAccaaga -gg------- -----(cuug -)-------- 661 ----ccuc-u gggguuguag gacacucugu a--------- ---------- ---------- 721 -----cggag uuacaaagga acg-aggu-a gauGAAgagg u-c(u-ggaa a)g-gcccgc 781 |c(aua)ggA GG(UAACAGC )CCUGU-Agu c-aaaacuuc guucucuccu ---------- 841 ---------- ----gagugg auccu---GA GUACGGCGGA A(CACGUG-A AA)UUCCGUC 901 GGAAUCC-GG G-AG(GACCA U)CU-CCC-A AGGCUAA--- -AUACUCCCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-GA GAUCCUGAAA CCGU-GUGCC UACAA-G-UA GUCAGAGCCC --G------- 1081 --------(- ---uuaa--) ---------- -----C-GGG UGAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUC- UCGUGC-AAG GUUAAgca-( -gaaga)-ug 1201 c-GGAGCCGC AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC GC-------- ---------- 1261 ---------- -----au-ga G-UACGUGGU CGUA-GACCC GAAAC-CAG- GUGA-UCUAC 1321 CCAUGUC|CA GGGUGAAGUU CAGG(UAAC) AC-UGAAUGG AGGCCCGAAC C-CACGCAC( 1381 -GUUGAAAA) GUGCG|GGG- AUGAG-GUGU GGGUAGGGGU (-GAAAU)GC CAAUCGAGCC 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCA AGGu---aa| 1501 -gag|UCUUG G|AGGUAG|A GC-ACUGA-U UGGACUA-GG |-GGCCC(cu acc)GGGUUA 1561 CCGAAUUCAG -UCAAACUCC GAA-UG-|CC A-AUG-a--- cuua----u| CCU-UGGGAG 1621 UCAGAC--UG C-GAGU(GAU AAG)AUCCGU -AGUC-GAAA GGG(-AAACA G-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAGUA-UACG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 AGUUGCUUA- GACAACCAGG AUGUUGGC(U UAGAAGCA)G CCAC-CAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CGA GU-GAC-UC- -UGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACGUA-U|C| ACCGAAGCU| GCGG|acugu uc-----(uu c--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --gaacagu- GG-UAGGAGA G|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCUG-U 2341 GAAGCCA-G- A-CC(-GGAA -)GGA--CUG GUGG|AGCGC U-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGA-AA GAGGGG(UGA GAAU)CCCCU C|CACC-GAA UGCCUAAGGU 2461 UUCCUG-AGG AAGG-(CUCG U)CC|G-CUC AGGGUUAGU| CGG|G-ACCU AAGCCGAGGC 2521 C(GAAA)-G- GCGU-AGGCG AUGG-ACAAC AGG-(UU-GA UAUU)C-CUG U|AC|ca-c- 2581 cuccuc-acc --auu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---ugagcaa u------ggg g--gga-cgc aggaggaua- gggu-aa|gc g-cgg(uau- 2761 -uggau-au- --)cc-gcgu -|ccaa---- ---------- ---gcag-uu aggc------ 2821 --uggga-aa uagg(ca-aa -u-)cc|g-- uuucccauaa ---------- ggcu-gagcu 2881 gug-augg|c ga-|------ ------gcga a(auaua-g) -uagc----- ------gaag 2941 --uuccu-ga uucc-aca-| cugccaagaa a-agccuc-u a-gcga---- ------gg-u 3001 -gagag--gu g|c|CCGUAC CGCAAACC(G ACACA)GG|U AG-GCGAGG- A-(GAGAA)U 3061 CCUAAGGUGA ||UCGAGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCUCUG--- ---------- ----uuaggg 3181 u(-gcaa-)g cccga----- ---------- --GAGAG-C| C(GCA)GUGA AUAGGCC-CA 3241 GG|CGACU-- ---GU(UUAG CAAAA)ACAC AGGUCUCUG| CGAAGCC(GU AA------)G 3301 GCGAAGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGCGCUUA 3361 GC-------- (G-UAA)--- --------GC GA-AGGUGCG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGCAAC GA-UCUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUU |AUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCGUGG|A GCU-UUACUG C|AGCCUGAU AUU|GAAUGU UGGUACAGCU UGUACAGGAU 3661 AGGUAGGAGC CUUGGAAA-- CCGGAGC(GC CA)GCUUCGG UGGAGGCAUC -G-GUGGGAU 3721 ACUACC|CUG G-CUGUAUUG ACC-UUCUAA -CCCGCC--- -GCCC(--UU -AUC)-GGGC 3781 GGGGA-GACA GUUUCAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-A-GG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(U UGGAAA)UCA UUCGCA-GA| 3901 GU(G|UAAAG )GCACAAGGG AGCUUGACUG CGAGAC(CUA CAA)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-CAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACG CACCGCUGGU GUACCAGU|U GUUCU(GC-C A-)AGGGCA- UCGCUGGGUA 4381 GCU-AUGUGC GGACGGGAUA AGUGCU(GAA AGCAUCUA)A GCAUGAAGCC CCCCUC|AAG 4441 AUGAGAUUUC C|CA|UUCC- -(-GCAA-)- -GGAA--GU- AAGA|-UC|C CUGA-(AAGA 4501 UG-A)UCAGG -UUGAUAG|G UCUG|AGGUG -GAAGUGUG- -(GCGA-)-- CACAU|GG-A 4561 GCUG|A|CAG AUACUAAUC- GAUCGA-GG| ACUUAA-CCA U-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS B.subti.03 4759 bp RNA RNA 30-JUN-1997 DEFINITION Bacillus subtilis.; 16S ribosomal RNA; 16S rRNA gene; 23S ribosomal RNA; 23S rRNA gene; 5S ribosomal RNA; 5S rRNA gene; ATP-binding transporter; catalase; dehydrogenase; glutamate-1-semialdehyde aminotransferase; gsaB gene; hypothetical 12.2 kd protein; hypothetical 13.5 kd protein; katA gene; senS gene; small acid-soluble protein gamma; sspE gene; thiA gene; tRNA-Asn gene; tRNA-Asp gene; tRNA-Cys gene; tRNA-Gln gene; tRNA-Glu gene; tRNA-Gly gene; tRNA-His gene; tRNA-Leu gene; tRNA-Met gene; tRNA-Phe gene; tRNA-Ser gene; tRNA-Thr gene; tRNA-Trp gene; tRNA-Tyr gene; tRNA-Val gene; ygaA gene; ygaB gene; ygaC gene; ygaD gene; ygaE gene; ygaF gene; ygaG gene; ygaH gene; ygaI gene; ygaJ gene; ygaK gene; ygxA gene. ACCESSION Z82044 KEYWORDS 16S ribosomal RNA; 16S rRNA gene; 23S ribosomal RNA; 23S rRNA gene; 5S ribosomal RNA; 5S rRNA gene; ATP-binding transporter; catalase; dehydrogenase; glutamate-1-semialdehyde aminotransferase; gsaB gene; hypothetical 12.2 kd protein; hypothetical 13.5 kd protein; katA gene; senS gene; small acid-soluble protein gamma; sspE gene; thiA gene; tRNA-Asn gene; tRNA-Asp gene; tRNA-Cys gene; tRNA-Gln gene; tRNA-Glu gene; tRNA-Gly gene; tRNA-His gene; tRNA-Leu gene; tRNA-Met gene; tRNA-Phe gene; tRNA-Ser gene; tRNA-Thr gene; tRNA-Trp gene; tRNA-Tyr gene; tRNA-Val gene; ygaA gene; ygaB gene; ygaC gene; ygaD gene; ygaE gene; ygaF gene; ygaG gene; ygaH gene; ygaI gene; ygaJ gene; ygaK gene; ygxA gene. SOURCE Bacillus subtilis. ORGANISM Bacillus subtilis. REFERENCE 1 (bases 1 to 24524) AUTHORS Cummings,N.J. and Connerton,I.F. TITLE The Bacillus subtilis 168 chromosome from sspE tp katA JOURNAL Microbiology 143, 1855-1859 (1997) STANDARD No information REFERENCE 2 (bases 1 to 24524) AUTHORS Cummings,N.J. TITLE Direct Submission JOURNAL Submitted (15-NOV-1996) Nicola J. Cummings, Food Macromolecular Science, Institute of Food Research, Earley Gate, Whiteknights Road, Reading, Berkshire, RG6 2EF, UK STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: Z82044 BASE COUNT 778 a 658 c 921 g 572 t 1830 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGUUAG- --AAAGGGCG CACGGUGGAU 121 G|CCUUGG|C ACUAGG|AG| CC-GAUGAAG GA|CGGG(AC GA-AC-)A|- CCG-AUAUGC 181 UUCGGG|-GA GCU(G-UA-A GCA-)AGCUU UG-AUC-CGG AGAUU|UCCG AAUGGG(GAA 241 A)CCC|ACCA CUC-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --guaaug)- GAGUGGU-AU CC-AUAUCU( 481 GA-AUUCA-- UA)GGA-UAU -GaG--AAG- GCAGAC|CC- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCG GAGGAAGAGA AAGC(-AAAU --)GCGAU|U CC-CUGAGUA GC(GGCGA)G 601 CGA-A-ACGG GA-UUA-GCC CAAAccaaga -gg------- -----(cuug -)-------- 661 ----ccucuu gggguuguag gacacucugu a--------- ---------- ---------- 721 -----cggag uuacaaaaga acg-aggu-a gauGAAgagg u-c(u-ggaa a)gggcccgc 781 |c(aua)ggA GG(UAACAGC )CCUGU-Agu c-aaaacuuc guucucuccu ---------- 841 ---------- ----gagugg auccu---GA GUACGGCGGA A(CACGUG-A AA)UUCCGUC 901 GGAAUCC-GG G-AG(GACCA U)CU-CCC-A AGGCUAA--- -AUACUCCCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-GA GAUCCUGAAA CCGU-GUGCC UACAA-G-UA GUCAGAGCCC --g------- 1081 --------(- ---uuaa--) ---------- -----c-ggG UGAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUC- CCGUGC-AAG GUUAAgca-( -gaaga)-ug 1201 c-GGAGCCGC AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC Gc-------- ---------- 1261 ---------- -----au-ga G-UACGUGGU CGUA-GACCC GAAAC-CAG- GUGA-UCUAC 1321 CCAUGUC|CA GGGUGAAGUU CAGG(UAAC) AC-UGAAUGG AGGCCCGAAC C-CACGCAC( 1381 -GUUGAAAA) GUGCG|GGG- AUGAG-GUGU GGGUAGGGGU (-GAAAU)GC CAAUCGAACC 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCA AGGu---aa| 1501 -gag|UCUUG G|AGGUAG|A GC-ACUGA-U UGGACUA-GG |-GGCCC(cu acc)GGGUUA 1561 CCGAAUUCAG -UCAAACUCC GAA-UG-|CC A-AUG-a--- cuua----u| CCU-UGGGAG 1621 UCAGAC--UG C-GAGU(GAU AAG)AUCCGU -AGUC-GAAA GGG(-AAACA G-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAGUA-UACG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 AGUUGCUUA- GACAACCAGG AUGUUGGC(U UAGAAGCA)G CCAC-CAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CGA GU-GAC-UC- -UGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACGUA-U|C| ACCGAAGCU| GCGG|acugu uc-----(uu c--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --gaacagu- GG-UAGGAGA G|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCUG-U 2341 GAAGCCA-G- A-CC(-GGAA -)GGA--CUG GUGG|AGCGC U-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGA-AA GAGGGG(UGA GAAU)CCCCU C|CACC-GAA UGCCUAAGGU 2461 UUCCUG-AGG AAGG-(CUCG U)CC|G-CUC AGGGUUAGU| CGG|G-ACCU AAGCCGAGGC 2521 C(GAAA)-G- GCGU-AGGCG AUGG-ACAAC AGG-(UU-GA UAUU)C-CUG U|AC|ca-c- 2581 cuccuc-acc --auu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---ugagcaa u------ggg g--gga-cgc aggaggaua- gggu-aa|gc g-cgg(uau- 2761 -uggau-au- --)cc-gcgu -|ccaa---- ---------- ---gcag-uu aggc------ 2821 --uggga-aa uagg(ca-aa -u-)cc|g-- uuucccauaa ---------- ggcu-gagcu 2881 gug-augg|c ga-|------ -------gcg a(aauauag) -uagc----- ------gaag 2941 --uuccu-ga uucc-aca-| cugccaagaa a-agccuc-u a-gcga---- ------gg-u 3001 -gagag--gu g|c|CCGUAC CGCAAACC(G UCACA)GG|U AG-GCGAGG- A-(GAGAA)U 3061 CCUAAGGUGA ||UCGAGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCUCUG--- ---------- ----uuaggg 3181 u(-gcaa-)g cccga----- ---------- --GAGAG-C| C(GCA)GUGA AUAGGCC-CA 3241 GG|CGACU-- ---GU(UUAG CAAAA)ACAC AGGUCUCUG| CGAAGCC(GU AA------)G 3301 GCGAAGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGCGCUUA 3361 GC-------- (G-UAA)--- --------GC GA-AGGUGCG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGCAAC GA-UCUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUU |AUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCGUGG|A GCU-UUACUG C|AGCCUGAU AUU|GAAUGU UGGUACAGCU UGUACAGGAU 3661 AGGUAGGAGC CUUGGAAA-- CCGGAGC(GC CA)GCUUCGG UGGAGGCAUC -G-GUGGGAU 3721 ACUACC|CUG G-CUGUAUUG ACC-UUCUAA -CCCGCC--- -GCCC(--UU -AUC)-GGGC 3781 GGGGA-GACA GUGUCAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAGG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(U UGGAAA)UCA UUCGCA-GA| 3901 GU(G|UAAAG )GCACAAGGG AGCUUGACUG CGAGAC(CUA CAA)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-CAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACG CACCGCUGGU GUACCAGU|U GUUCU(GC-C A-)AGGGCA- UCGCUGGGUA 4381 GCU-AUGUGC GGACGGGAUA AGUGCU(GAA AGCAUCUA)A GCAUGAAGCC CCCCUC|AAG 4441 AUGAGAUUUC C|CA|UUCC- -(-GCAA-)- -GGAA--GU- AAGA|-UC|C CUGA-(AAGA 4501 UG-A)UCAGG -UUGAUAG|G UCUG|AGGUG -GAAGUGUG- -(GCGA-)-- CACAU|GG-A 4561 GCUG|A|CAG AUACUAAUC- GAUCGA-GG| GCUUAA-CCA U-------|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS B.subti.04 4759 bp RNA RNA 18-APR-1997 DEFINITION Bacillus subtilis.; tRNA-Asp; tRNA-Met; tRNA-Gly; tRNA-Arg; 5S ribosomal RNA; 16S ribosomal RNA; 23S ribosomal RNA; ydiD; groEL; groES; ydiL; ydiK; ydiJ; ydiI; ydiH; ydiG; ydiF; ydiE; ydiC; ydiB; ydiA; Gly-tRNA; Arg-tRNA; ydhU; ydhT; ydhS; ydhR; ydhQ; ydhP; ydhO; ydhN; ydhM; ydhL; ydhK; ydhJ; ydhI; ydhH; ydhG; phoB; ydhF; ydhE; ydhD; ydhC; ydhB. ACCESSION D88802 KEYWORDS tRNA-Asp; tRNA-Met; tRNA-Gly; tRNA-Arg; 5S ribosomal RNA; 16S ribosomal RNA; 23S ribosomal RNA; ydiD; groEL; groES; ydiL; ydiK; ydiJ; ydiI; ydiH; ydiG; ydiF; ydiE; ydiC; ydiB; ydiA; Gly-tRNA; Arg-tRNA; ydhU; ydhT; ydhS; ydhR; ydhQ; ydhP; ydhO; ydhN; ydhM; ydhL; ydhK; ydhJ; ydhI; ydhH; ydhG; phoB; ydhF; ydhE; ydhD; ydhC; ydhB. SOURCE Bacillus subtilis. ORGANISM Bacillus subtilis. REFERENCE 1 (bases 1 to 36308) AUTHORS Sadaie,Y. TITLE Direct Submission JOURNAL Submitted (05-NOV-1996) to the DDBJ/EMBL/GenBank databases. Yoshito Sadaie, National Institute of Genetics, Radioisotope Center; Yata 1111, Mishima, Shizuoka 411, Japan (E-mail : ysadaie@lab.nig.ac.jp, Tel:81-0559-81-6870, Fax:81-0559-81-6870 ) STANDARD No information REFERENCE 2 (sites) AUTHORS Sadaie,Y., Yata,K., Fujita,M., Sagai,H., Itaya,M., Kasahara, Y. and Ogasawara,N. TITLE The nucleotide sequence of the phoB-rrnE-groESL region of the Bacillus subtilis chromosome JOURNAL Unpublished (1997) STANDARD No information REFERENCE 3 (sites) AUTHORS Sadaie,Y., Yata,K., Fujita,M., Sagai,H., Itaya,M., Kasahara, Y. and Ogasawara,N. TITLE Nucleotide sequence and analysis of the phoB-rrnE-groESL region of the Bacillus subtilis chromosome JOURNAL Microbiology (1997) In press STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: D88802, Z99104 For Z99104: GB pos. #s (92251..95178) BASE COUNT 779 a 658 c 920 g 571 t 1831 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGUUAG- --AAAGGGCG CACGGUGGAU 121 G|CCUUGG|C ACUAGG|AG| CC-GAUGAAG GA|CGGG(AC GA-AC-)A|- CCG-AUAUGC 181 UUCGGG|-GA GCU(G-UA-A GCA-)AGCUU UG-AUC-CGG AGAUU|UCCG AAUGGG(GAA 241 A)CCC|ACCA CUC-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --guaaug)- GAGUGGU-AU CC-AUAUCU( 481 GA-AUUCA-- UA)GGA-UAU -GaG--AAG- GCAGAC|CC- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCG GAGGAAGAGA AAGC(-AAAU --)GCGAU|U CC-CUGAGUA GC(GGCGA)G 601 CGA-A-ACGG GA-UUA-GCC CAAAccaaga -gg------- -----(cuug -)-------- 661 ----ccucuu gggguuguag gacacucugu a--------- ---------- ---------- 721 -----cggag uuacaaagga acg-aggu-a gauGAAgagg u-c(u-ggaa a)g-gcccgc 781 |c(aua)ggA GG(UAACAGC )CCUGU-Agu c-aaaacuuc guucucuccu ---------- 841 ---------- ----gagugg auccu---GA GUACGGCGGA A(CACGUG-A AA)UUCCGUC 901 GGAAUCC-GG G-AG(GACCA U)CU-CCC-A AGGCUAA--- -AUACUCCCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-GA GAUCCUGAAA CCGU-GUGCC UACAA-G-UA GUCAGAGCCC --g------- 1081 --------(- ---uuaa--) ---------- -----c-ggG UGAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUC- CCGUGC-AAG GUUAAgca-( -gaaga)-ug 1201 c-GGAGCCGC AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC Gc-------- ---------- 1261 ---------- -----au-ga G-UACGUGGU CGUA-GACCC GAAAC-CAG- GUGA-UCUAC 1321 CCAUGUC|CA GGGUGAAGUU CAGG(UAAC) AC-UGAAUGG AGGCCCGAAC C-CACGCAC( 1381 -GUUGAAAA) GUGCG|GGG- AUGAG-GUGU GGGUAGGGGU (-GAAAU)GC CAAUCGAACC 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCA AGGu---aa| 1501 -gag|UCUUG G|AGGUAG|A GC-ACUGA-U UGGACUA-GG |-GGCCC(cu acc)GGGUUA 1561 CCGAAUUCAG -UCAAACUCC GAA-UG-|CC A-AUG-a--- cuua----u| CCU-UGGGAG 1621 UCAGAC--UG C-GAGU(GAU AAG)AUCCGU -AGUC-GAAA GGG(-AAACA G-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAGUA-UACG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 AGUUGCUUA- GACAACCAGG AUGUUGGC(U UAGAAGCA)G CCAC-CAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CGA GU-GAC-UC- -UGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACGUA-U|C| ACCGAAGCU| GCGG|acugu uc-----(uu c--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --gaacagu- GG-UAGGAGA G|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCUG-U 2341 GAAGCCA-G- A-CC(-GGAA -)GGA--CUG GUGG|AGCGC U-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGA-AA GAGGGG(UGA GAAU)CCCCU C|CACC-GAA UGCCUAAGGU 2461 UUCCUG-AGG AAGG-(CUCG U)CC|G-CUC AGGGUUAGU| CGG|G-ACCU AAGCCGAGGC 2521 C(GAAA)-G- GCGU-AGGCG AUGG-ACAAC AGG-(UU-GA UAUU)C-CUG U|AC|ca-c- 2581 cuccuc-acc --auu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---ugagcaa u------ggg g--gga-cgc aggaggaua- gggu-aa|gc g-cgg(uau- 2761 -uggau-au- --)cc-gcgu -|ccaa---- ---------- ---gcag-uu aggc------ 2821 --uggga-aa uagg(ca-aa -u-)cc|g-- uuucccauaa ---------- ggcu-gagcu 2881 gug-augg|c ga-|------ -------gcg a(aauauag) -uagc----- ------gaag 2941 --uuccu-ga uucc-aca-| cugccaagaa a-agccuc-u a-gcga---- ------gg-u 3001 -gagag--gu g|c|CCGUAC CGCAAACC(G ACACA)GG|U AG-GCGAGG- A-(GAGAA)U 3061 CCUAAGGUGA ||UCGAGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCUCUG--- ---------- ----uuaggg 3181 u(-gcaa-)g cccga----- ---------- --GAGAG-C| C(GCA)GUGA AUAGGCC-CA 3241 GG|CGACU-- ---GU(UUAG CAAAA)ACAC AGGUCUCUG| CGAAGCC(GU AA------)G 3301 GCGAAGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGCGCUUA 3361 GC-------- (G-UAA)--- --------GC GA-AGGUGCG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGCAAC GA-UCUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUU |AUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCGUGG|A GCU-UUACUG C|AGCCUGAU AUU|GAAUGU UGGUACAGCU UGUACAGGAU 3661 AGGUAGGAGC CUUGGAAA-- CCGGAGC(GC CA)GCUUCGG UGGAGGCAUC -G-GUGGGAU 3721 ACUACC|CUG G-CUGUAUUG ACC-UUCUAA -CCCGCC--- -GCCC(--UU -AUC)-GGGC 3781 GGGGA-GACA GUGUCAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAGG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(U UGGAAA)UCA UUCGCA-GA| 3901 GU(G|UAAAG )GCACAAGGG AGCUUGACUG CGAGAC(CUA CAA)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-CAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACG CACCGCUGGU GUACCAGU|U GUUCU(GC-C A-)AGGGCA- UCGCUGGGUA 4381 GCU-AUGUGC GGACGGGAUA AGUGCU(GAA AGCAUCUA)A GCAUGAAGCC CCCCUC|AAG 4441 AUGAGAUUUC C|CA|UUCC- -(-GCAA-)- -GGAA--GU- AAGA|-UC|C CUGA-(AAGA 4501 UG-A)UCAGG -UUGAUAG|G UCUG|AGGUG -GAAGUGUG- -(GCGA-)-- CACAU|GG-A 4561 GCUG|A|CAG AUACUAAUC- GAUCGA-GG| ACUUAA-CCA U-------|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS B.subti.05 4759 bp RNA RNA 02-SEP-1996 DEFINITION Bacillus subtilis.; . ACCESSION D26185 KEYWORDS . SOURCE Bacillus subtilis. ORGANISM Bacillus subtilis. REFERENCE 1 (sites) AUTHORS Moriya,S., Ogasawara,N. and Yoshikawa,H. TITLE of the Bacillus subtilis chromosome. III. Nucleotide sequence of some 10,000 base pairs in the origin region Structure and function of the region of the replication origin JOURNAL Nucleic Acids Res. 13 (7), 2251-2265 (1985) STANDARD No information REFERENCE 2 (sites) AUTHORS Alonso,J.C., Shirahige,K. and Ogasawara,N. TITLE Molecular cloning, genetic characterization and DNA sequence analysis of the recM region of Bacillus subtilis JOURNAL Nucleic Acids Res. 18 (23), 6771-6777 (1990) STANDARD No information REFERENCE 3 (sites) AUTHORS Ogasawara,N. and Yoshikawa,H. TITLE Genes and their organization in the replication origin region of the bacterial chromosome JOURNAL Mol. Microbiol. 6 (5), 629-634 (1992) STANDARD No information REFERENCE 4 (bases 1 to 180136) AUTHORS Ogasawara,N., Nakai,S. and Yoshikawa,H. TITLE Systematic sequencing of the 180 kilobase region of the Bacillus subtilis chromosome containing the replication origin JOURNAL DNA Res. 1 (1), 1-14 (1994) STANDARD No information REFERENCE 5 (bases 1 to 180136) AUTHORS Ogasawara,N. TITLE Direct Submission JOURNAL Submitted (24-DEC-1993) to the DDBJ/EMBL/GenBank databases. Naotake Ogasawara, Nara Institute of Science and Technology, Department of Biological Sciences; 8916-5, Takayama, Ikoma, Nara 630, Japan (E-mail:nogasawa@bs.aist-nara.ac.jp, Tel: 07437-2-5430, Fax:07437-2-5439) STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: D26185, Z99104 For Z99104: GB pos. #s (11707..14634) For D26185: GB pos. #s (75309..78236) BASE COUNT 779 a 658 c 920 g 571 t 1831 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGUUAG- --AAAGGGCG CACGGUGGAU 121 G|CCUUGG|C ACUAGG|AG| CC-GAUGAAG GA|CGGG(AC GA-AC-)A|- CCG-AUAUGC 181 UUCGGG|-GA GCU(G-UA-A GCA-)AGCUU UG-AUC-CGG AGAUU|UCCG AAUGGG(GAA 241 A)CCC|ACCA CUC-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --guaaug)- GAGUGGU-AU CC-AUAUCU( 481 GA-AUUCA-- UA)GGA-UAU -GaG--AAG- GCAGAC|CC- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCG GAGGAAGAGA AAGC(-AAAU --)GCGAU|U CC-CUGAGUA GC(GGCGA)G 601 CGA-A-ACGG GA-UCA-GCC CAAAccaaga -gg------- -----(cuug -)-------- 661 ----ccucuu gggguuguag gacacucugu a--------- ---------- ---------- 721 -----cggag uuacaaagga acg-aggu-a gauGAAgagg u-c(u-ggaa a)g-gcccgc 781 |c(aua)ggA GG(UAACAGC )CCUGU-Agu c-aaaacuuc guucucuccu ---------- 841 ---------- ----gagugg auccu---GA GUACGGCGGA A(CACGUG-A AA)UUCCGUC 901 GGAAUCC-GG G-AG(GACCA U)CU-CCC-A AGGCUAA--- -AUACUCCCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-GA GAUCCUGAAA CCGU-GUGCC UACAA-G-UA GUCAGAGCCC --g------- 1081 --------(- ---uuaa--) ---------- -----c-gGG UGAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUC- UCGUGC-AAG GUUAAgca-( -gaaga)-ug 1201 c-GGAGCCGC AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC Gc-------- ---------- 1261 ---------- -----au-ga G-UACGUGGU CGUA-GACCC GAAAC-CAG- GUGA-UCUAC 1321 CCAUGUC|CA GGGUGAAGUU CAGG(UAAC) AC-UGAAUGG AGGCCCGAAC C-CACGCAC( 1381 -GUUGAAAA) GUGCG|GGG- AUGAG-GUGU GGGUAGGGGU (-GAAAU)GC CAAUCGAACC 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCA AGGu---aa| 1501 -gag|UCUUG G|AGGUAG|A GC-ACUGA-U UGGACUA-GG |-GGCCC(cu acc)GGGUUA 1561 CCGAAUUCAG -UCAAACUCC GAA-UG-|CC A-AUG-a--- cuua----u| CCU-UGGGAG 1621 UCAGAC--UG C-GAGU(GAU AAG)AUCCGU -AGUC-GAAA GGG(-AAACA G-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAGUA-UACG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 AGUUGCUUA- GACAACCAGG AUGUUGGC(U UAGAAGCA)G CCAC-CAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CGA GU-GAC-UC- -UGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACGUA-U|C| ACCGAAGCU| GCGG|acugu uc-----(uu c--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --gaacagu- GG-UAGGAGA G|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCUG-U 2341 GAAGCCA-G- A-CC(-GGAA -)GGA--CUG GUGG|AGCGC U-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGA-AA GAGGGG(UGA GAAU)CCCCU C|CACC-GAA UGCCUAAGGU 2461 UUCCUG-AGG AAGG-(CUCG U)CC|G-CUC AGGGUUAGU| CGG|G-ACCU AAGCCGAGGC 2521 C(GAAA)-G- GCGU-AGGCG AUGG-ACAAC AGG-(UU-GA UAUU)C-CUG U|AC|ca-c- 2581 cuccuc-acc --auu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---ugagcaa u------ggg g--gga-cgc aggaggaua- gggu-aa|gc g-cgg(uau- 2761 -uggau-au- --)cc-gcgu -|ccaa---- ---------- ---gcag-uu aggc------ 2821 --uggga-aa uagg(ca-aa -u-)cc|g-- uuucccauaa ---------- ggcu-gagcu 2881 gug-augg|c ga-|------ -------gcg a(aauauag) -uagc----- ------gaag 2941 --uuccu-ga uucc-aca-| cugccaagaa a-agccuc-u a-gcga---- ------gg-u 3001 -gagag--gu g|c|CCGUAC CGCAAACC(G ACACA)GG|U AG-GCGAGG- A-(GAGAA)U 3061 CCUAAGGUGA ||UCGAGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCUCUG--- ---------- ----uuaggg 3181 u(-gcaa-)g cccga----- ---------- --GAGAG-C| C(GCA)GUGA AUAGGCC-CA 3241 GG|CGACU-- ---GU(UUAG CAAAA)ACAC AGGUCUCUG| CGAAGCC(GU AA------)G 3301 GCGAAGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGCGCUUA 3361 GC-------- (G-UAA)--- --------GC GA-AGGUGCG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGCAAC GA-UCUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUU |AUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCGUGG|A GCU-UUACUG C|AGCCUGAU AUU|GAAUGU UGGUACAGCU UGUACAGGAU 3661 AGGUAGGAGC CUUGGAAA-- CCGGAGC(GC CA)GCUUCGG UGGAGGCAUC -G-GUGGGAU 3721 ACUACC|CUG G-CUGUAUUG ACC-UUCUAA -CCCGCC--- -GCCC(--UU -AUC)-GGGC 3781 GGGGA-GACA GUGUCAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAGG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(U UGGAAA)UCA UUCGCA-GA| 3901 GU(G|UAAAG )GCACAAGGG AGCUUGACUG CGAGAC(CUA CAA)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-CAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACG CACCGCUGGU GUACCAGU|U GUUCU(GC-C A-)AGGGCA- UCGCUGGGUA 4381 GCU-AUGUGC GGACGGGAUA AGUGCU(GAA AGCAUCUA)A GCAUGAAGCC CCCCUC|AAG 4441 AUGAGAUUUC C|CA|UUCC- -(-GCAA-)- -GGAA--GU- AAGA|-UC|C CUGA-(AAGA 4501 UG-A)UCAGG -UUGAUAG|G UCUG|AGGUG -GAAGUGUG- -(GCGA-)-- CACAU|GG-A 4561 GCUG|A|CAG AUACUAAUC- GAUCGA-GG| ACUUAA-CCA U-------|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS B.subti.06 4759 bp RNA RNA 02-SEP-1996 DEFINITION Bacillus subtilis.; . ACCESSION D26185 KEYWORDS . SOURCE Bacillus subtilis. ORGANISM Bacillus subtilis. REFERENCE 1 (sites) AUTHORS Moriya,S., Ogasawara,N. and Yoshikawa,H. TITLE of some 10,000 base pairs in the origin region Structure and function of the region of the replication origin of the Bacillus subtilis chromosome. III. Nucleotide sequence JOURNAL Nucleic Acids Res. 13 (7), 2251-2265 (1985) STANDARD No information REFERENCE 2 (sites) AUTHORS Alonso,J.C., Shirahige,K. and Ogasawara,N. TITLE Molecular cloning, genetic characterization and DNA sequence analysis of the recM region of Bacillus subtilis JOURNAL Nucleic Acids Res. 18 (23), 6771-6777 (1990) STANDARD No information REFERENCE 3 (sites) AUTHORS Ogasawara,N. and Yoshikawa,H. TITLE Genes and their organization in the replication origin region of the bacterial chromosome JOURNAL Mol. Microbiol. 6 (5), 629-634 (1992) STANDARD No information REFERENCE 4 (bases 1 to 180136) AUTHORS Ogasawara,N., Nakai,S. and Yoshikawa,H. TITLE Systematic sequencing of the 180 kilobase region of the Bacillus subtilis chromosome containing the replication origin JOURNAL DNA Res. 1 (1), 1-14 (1994) STANDARD No information REFERENCE 5 (bases 1 to 180136) AUTHORS Ogasawara,N. TITLE Direct Submission JOURNAL Submitted (24-DEC-1993) to the DDBJ/EMBL/GenBank databases. Naotake Ogasawara, Nara Institute of Science and Technology, Department of Biological Sciences; 8916-5, Takayama, Ikoma, Nara 630, Japan (E-mail:nogasawa@bs.aist-nara.ac.jp, Tel: 07437-2-5430, Fax:07437-2-5439) STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: D26185, Z99104 For Z99104: GB pos. #s(32175..35102) For D26185: GB pos. #s(95777..98704) BASE COUNT 779 a 659 c 920 g 570 t 1831 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGUUAG- --AAAGGGCG CACGGUGGAU 121 G|CCUUGG|C ACUAGG|AG| CC-GAUGAAG GA|CGGG(AC GA-AC-)A|- CCG-AUAUGC 181 UUCGGG|-GA GCU(G-UA-A GCA-)AGCUU UG-AUC-CGG AGAUU|UCCG AAUGGG(GAA 241 A)CCC|ACCA CUC-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --guaaug)- GAGUGGU-AU CC-AUAUCU( 481 GA-AUUCA-- UA)GGA-UAU -GaG--AAG- GCAGAC|CC- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCG GAGGAAGAGA AAGC(-AAAU --)GCGAU|U CC-CUGAGUA GC(GGCGA)G 601 CGA-A-ACGG GA-UUA-GCC CAAAccaaga -gg------- -----(cuug -)-------- 661 ----ccucuu gggguuguag gacacucugu a--------- ---------- ---------- 721 -----c-gga guuacaaagg aacgaggu-a gauGAAgagg u-c(u-ggaa a)g-gcccgc 781 |c(aua)ggA GG(UAACAGC )CCUGU-Agu c-aaaacuuc guucucuccu ---------- 841 ---------- ----gagugg auccu---GA GUACGGCGGA A(CACGUG-A AA)UUCCGUC 901 GGAAUCC-GG G-AG(GACCA U)CU-CCC-A AGGCUAA--- -AUACUCCCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-GA GAUCCUGAAA CCGU-GUGCC UACAA-G-UA GUCAGAGCCC --g------- 1081 --------(- ---uuaa--) ---------- -----c-ggG UGAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUC- CCGUGC-AAG GUUAAgca-( -gaaga)-ug 1201 c-GGAGCCGC AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC Gc-------- ---------- 1261 ---------- -----au-ga G-UACGUGGU CGUA-GACCC GAAAC-CAG- GUGA-UCUAC 1321 CCAUGUC|CA GGGUGAAGUU CAGG(UAAC) AC-UGAAUGG AGGCCCGAAC C-CACGCAC( 1381 -GUUGAAAA) GUGCG|GGG- AUGAG-GUGU GGGUAGGGGU (-GAAAU)GC CAAUCGAACC 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCA AGGu---aa| 1501 -gag|UCUUG G|AGGUAG|A GC-ACUGA-U UGGACUA-GG |-GGCCC(cu acc)GGGUUA 1561 CCGAAUUCAG -UCAAACUCC GAA-UG-|CC A-AUG-a--- cuua----u| CCU-UGGGAG 1621 UCAGAC--UG C-GAGU(GAU AAG)AUCCGU -AGUC-GAAA GGG(-AAACA G-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAGUA-UACG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 AGUUGCUUA- GACAACCAGG AUGUUGGC(U UAGAAGCA)G CCAC-CAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CGA GU-GAC-UC- -UGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACGUA-U|C| ACCGAAGCU| GCGG|acugu uc-----(uu c--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --gaacagu- GG-UAGGAGA G|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCUG-U 2341 GAAGCCA-G- A-CC(-GGAA -)GGA--CUG GUGG|AGCGC U-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGA-AA GAGGGG(UGA GAAU)CCCCU C|CACC-GAA UGCCUAAGGU 2461 UUCCUG-AGG AAGG-(CUCG U)CC|G-CUC AGGGUUAGU| CGG|G-ACCU AAGCCGAGGC 2521 C(GAAA)-G- GCGU-AGGCG AUGG-ACAAC AGG-(UU-GA UAUU)C-CUG U|AC|ca-c- 2581 cuccuc-acc --auu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---ugagcaa u------ggg g--gga-cgc aggaggaua- gggu-aa|gc g-cgg(uau- 2761 -uggau-au- --)cc-gcgu -|ccaa---- ---------- ---gcag-uu aggc------ 2821 --uggga-aa uagg(ca-aa -u-)cc|g-- uuucccauaa ---------- ggcu-gagcu 2881 gug-augg|c ga-|------ -------gcg a(aauauag) -uagc----- ------gaag 2941 --uuccu-ga uucc-aca-| cugccaagaa a-agccuc-u a-gcga---- ------gg-u 3001 -gagag--gu g|c|CCGUAC CGCAAACC(G ACACA)GG|U AG-GCGAGG- A-(GAGAA)U 3061 CCUAAGGUGA ||UCGAGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCUCUG--- ---------- ----uuaggg 3181 u(-gcaa-)g cccga----- ---------- --GAGAG-C| C(GCA)GUGA AUAGGCC-CA 3241 GG|CGACU-- ---GU(UUAG CAAAA)ACAC AGGUCUCUG| CGAAGCC(GU AA------)G 3301 GCGAAGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGCGCUUA 3361 GC-------- (G-UAA)--- --------GC GA-AGGUGCG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGCAAC GA-UCUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUU |AUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCGUGG|A GCU-UUACUG C|AGCCUGAU AUU|GAAUGU UGGUACAGCU UGUACAGGAU 3661 AGGUAGGAGC CUUGGAAA-- CCGGAGC(GC CA)GCUUCGG UGGAGGCAUC -G-GUGGGAU 3721 ACUACC|CUG G-CUGUAUUG ACC-UUCUAA -CCCGCC--- -GCCC(--UU -AUC)-GGGC 3781 GGGGA-GACA GUGUCAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAGG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(U UGGAAA)UCA UUCGCA-GA| 3901 GU(G|UAAAG )GCACAAGGG AGCUUGACUG CGAGAC(CUA CAA)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-CAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACG CACCGCUGGU GUACCAGU|U GUUCU(GC-C A-)AGGGCA- UCGCUGGGUA 4381 GCU-AUGUGC GGACGGGAUA AGUGCU(GAA AGCAUCUA)A GCAUGAAGCC CCCCUC|AAG 4441 AUGAGAUUUC C|CA|UUCC- -(-GCAA-)- -GGAA--GU- AAGA|-UC|C CUGA-(AAGA 4501 UG-A)UCAGG -UUGAUAG|G UCUG|AGGUG -GAAGUGUG- -(GCGA-)-- CACAU|GG-A 4561 GCUG|A|CAG AUACUAAUC- GAUCGA-GG| ACUUAA-CCA C-------|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS B.subti.07 4759 bp RNA RNA 02-SEP-1996 DEFINITION Bacillus subtilis.; . ACCESSION D26185 KEYWORDS . SOURCE Bacillus subtilis. ORGANISM Bacillus subtilis. REFERENCE 1 (sites) AUTHORS Moriya,S., Ogasawara,N. and Yoshikawa,H. TITLE Structure and function of the region of the replication origin of the Bacillus subtilis chromosome. III. Nucleotide sequence of some 10,000 base pairs in the origin region JOURNAL Nucleic Acids Res. 13 (7), 2251-2265 (1985) STANDARD No information REFERENCE 2 (sites) AUTHORS Alonso,J.C., Shirahige,K. and Ogasawara,N. TITLE Molecular cloning, genetic characterization and DNA sequence analysis of the recM region of Bacillus subtilis JOURNAL Nucleic Acids Res. 18 (23), 6771-6777 (1990) STANDARD No information REFERENCE 3 (sites) AUTHORS Ogasawara,N. and Yoshikawa,H. TITLE Genes and their organization in the replication origin region of the bacterial chromosome JOURNAL Mol. Microbiol. 6 (5), 629-634 (1992) STANDARD No information REFERENCE 4 (bases 1 to 180136) AUTHORS Ogasawara,N., Nakai,S. and Yoshikawa,H. TITLE Systematic sequencing of the 180 kilobase region of the Bacillus subtilis chromosome containing the replication origin JOURNAL DNA Res. 1 (1), 1-14 (1994) STANDARD No information REFERENCE 5 (bases 1 to 180136) AUTHORS Ogasawara,N. TITLE Direct Submission JOURNAL Submitted (24-DEC-1993) to the DDBJ/EMBL/GenBank databases. Naotake Ogasawara, Nara Institute of Science and Technology, Department of Biological Sciences; 8916-5, Takayama, Ikoma, Nara 630, Japan (E-mail:nogasawa@bs.aist-nara.ac.jp, Tel: 07437-2-5430, Fax:07437-2-5439) STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: D26185, Z99104 For Z99104: GB pos. #s (98107..101034) For D26185: GB pos. #s (161709..164636) BASE COUNT 779 a 658 c 920 g 571 t 1831 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGUUAG- --AAAGGGCG CACGGUGGAU 121 G|CCUUGG|C ACUAGG|AG| CC-GAUGAAG GA|CGGG(AC GA-AC-)A|- CCG-AUAUGC 181 UUCGGG|-GA GCU(G-UA-A GCA-)AGCUU UG-AUC-CGG AGAUU|UCCG AAUGGG(GAA 241 A)CCC|ACCA CUC-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --guaaug)- GAGUGGU-AU CC-AUAUCU( 481 GA-AUUCA-- UA)GGA-UAU -GaG--AAG- GCAGAC|CC- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCG GAGGAAGAGA AAGC(-AAAU --)GCGAU|U CC-CUGAGUA GC(GGCGA)G 601 CGA-A-ACGG GA-UCA-GCC CAAAccaaga -gg------- -----(cuug -)-------- 661 ----ccucuu gggguuguag gacacucugu a--------- ---------- ---------- 721 -----c-gga guuacaaagg aacgaggu-a gauGAAgagg u-c(u-ggaa a)g-gcccgc 781 |c(aua)ggA GG(UAACAGC )CCUGU-Agu c-aaaacuuc guucucuccu ---------- 841 ---------- ----gagugg auccu---GA GUACGGCGGA A(CACGUG-A AA)UUCCGUC 901 GGAAUCC-GG G-AG(GACCA U)CU-CCC-A AGGCUAA--- -AUACUCCCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-GA GAUCCUGAAA CCGU-GUGCC UACAA-G-UA GUCAGAGCCC --g------- 1081 --------(- ---uuaa--) ---------- -----c-ggG UGAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUC- CCGUGC-AAG GUUAAgca-( -gaaga)-ug 1201 c-GGAGCCGC AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC Gc-------- ---------- 1261 ---------- -----au-ga G-UACGUGGU CGUA-GACCC GAAAC-CAG- GUGA-UCUAC 1321 CCAUGUC|CA GGGUGAAGUU CAGG(UAAC) AC-UGAAUGG AGGCCCGAAC C-CACGCAC( 1381 -GUUGAAAA) GUGCG|GGG- AUGAG-GUGU GGGUAGGGGU (-GAAAU)GC CAAUCGAACC 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCA AGGu---aa| 1501 -gag|UCUUG G|AGGUAG|A GC-ACUGA-U UGGACUA-GG |-GGCCC(cu acc)GGGUUA 1561 CCGAAUUCAG -UCAAACUCC GAA-UG-|CC A-AUG-a--- cuua----u| CCU-UGGGAG 1621 UCAGAC--UG C-GAGU(GAU AAG)AUCCGU -AGUC-GAAA GGG(-AAACA G-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAGUA-UACG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 AGUUGCUUA- GACAACCAGG AUGUUGGC(U UAGAAGCA)G CCAC-CAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CGA GU-GAC-UC- -UGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACGUA-U|C| ACCGAAGCU| GCGG|acugu uc-----(uu c--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --gaacagu- GG-UAGGAGA G|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCUG-U 2341 GAAGCCA-G- A-CC(-GGAA -)GGA--CUG GUGG|AGCGC U-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGA-AA GAGGGG(UGA GAAU)CCCCU C|CACC-GAA UGCCUAAGGU 2461 UUCCUG-AGG AAGG-(CUCG U)CC|G-CUC AGGGUUAGU| CGG|G-ACCU AAGCCGAGGC 2521 C(GAAA)-G- GCGU-AGGCG AUGG-ACAAC AGG-(UU-GA UAUU)C-CUG U|AC|ca-c- 2581 cuccuc-acc --auu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---ugagcaa u------ggg g--gga-cgc aggaggaua- gggu-aa|gc g-cgg(uau- 2761 -uggau-au- --)cc-gcgu -|ccaa---- ---------- ---gcag-uu aggc------ 2821 --uggga-aa uagg(ca-aa -u-)cc|g-- uuucccauaa ---------- ggcu-gagcu 2881 gug-augg|c ga-|------ -------gcg a(aauauag) -uagc----- ------gaag 2941 --uuccu-ga uucc-aca-| cugccaagaa a-agccuc-u a-gcga---- ------gg-u 3001 -gagag--gu g|c|CCGUAC CGCAAACC(G ACACA)GG|U AG-GCGAGG- A-(GAGAA)U 3061 CCUAAGGUGA ||UCGAGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCUCUG--- ---------- ----uuaggg 3181 u(-gcaa-)g cccga----- ---------- --GAGAG-C| C(GCA)GUGA AUAGGCC-CA 3241 GG|CGACU-- ---GU(UUAG CAAAA)ACAC AGGUCUCUG| CGAAGCC(GU AA------)G 3301 GCGAAGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGCGCUUA 3361 GC-------- (G-UAA)--- --------GC GA-AGGUGCG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGCAAC GA-UCUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUU |AUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCGUGG|A GCU-UUACUG C|AGCCUGAU AUU|GAAUGU UGGUACAGCU UGUACAGGAU 3661 AGGUAGGAGC CUUGGAAA-- CCGGAGC(GC CA)GCUUUGG UGGAGGCAUC -G-GUGGGAU 3721 ACUACC|CUG G-CUGUAUUG ACC-UUCUAA -CCCGCC--- -GCCC(--UU -AUC)-GGGC 3781 GGGGA-GACA GUGUCAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAGG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(U UGGAAA)UCA UUCGCA-GA| 3901 GU(G|UAAAG )GCACAAGGG AGCUUGACUG CGAGAC(CUA CAA)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-CAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACG CACCGCUGGU GUACCAGU|U GUUCU(GC-C A-)AGGGCA- UCGCUGGGUA 4381 GCU-AUGUGC GGACGGGAUA AGUGCU(GAA AGCAUCUA)A GCAUGAAGCC CCCCUC|AAG 4441 AUGAGAUUUC C|CA|UUCC- -(-GCAA-)- -GGAA--GU- AAGA|-UC|C CUGA-(AAGA 4501 UG-A)UCAGG -UUGAUAG|G UCUG|AGGUG -GAAGUGUG- -(GCGA-)-- CACAU|GG-A 4561 GCUG|A|CAG AUACUAAUC- GAUCGA-GG| ACUUAA-CCA U-------|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS B.subti.08 4759 bp RNA RNA 20-NOV-1997 DEFINITION Bacillus subtilis.; . ACCESSION Z99104 KEYWORDS . SOURCE Bacillus subtilis. ORGANISM Bacillus subtilis. REFERENCE 1 (bases 1 to 213080) AUTHORS Ehrlich,S.D., Emmerson,P.T., Entian,K.D., Errington,J., Fabret ,C., Ferrari,E., Foulger,D., Fritz,C., Fujita,M., Fujita,Y., Fuma,S., Galizzi,A., Galleron,N., Ghim,S.Y., Glaser,P., Goffeau,A., Golightly,E.J., Grandi,G., Guiseppi,G., Guy,B.J., Haga,K., Haiech,J., Harwood,C.R., Henaut,A., Hilbert,H., Holsappel,S., Hosono,S., Hullo,M.F., Itaya,M., Jones,L., Joris ,B., Karamata,D., Kasahara,Y., Klaerr-Blanchard,M., Klein,C., Kobayashi,Y., Koetter,P., Koningstein,G., Krogh,S., Kumano,M., Kurita,K., Lapidus,A., Lardinois,S., Lauber,J., Lazarevic,V., Lee,S.M., Levine,A., Liu,H., Masuda,S., Mauel,C., Medigue,C., Medina,N., Mellado,R.P., Mizuno,M., Moestl,D., Nakai,S., Noback,M., Noone,D., O'Reilly,M., Ogawa,K., Ogiwara,A., Oudega ,B., Park,S.H., Parro,V., Pohl,T.M., Portetelle,D., Porwollik ,S., Prescott,A.M., Presecan,E., Pujic,P., Purnelle,B., Rapoport,G., Rey,M., Reynolds,S., Rieger,M., Rivolta,C., Rocha ,E., Roche,B., Rose,M., Sadaie,Y., Sato,T., Scanlan,E., Schleich,S., Schroeter,R., Scoffone,F., Sekiguchi,J., Sekowska ,A., Seror,S.J., Serror,P., Shin,B.S., Soldo,B., Sorokin,A., Tacconi,E., Takagi,T., Takahashi,H., Takemaru,K., Takeuchi,M., Tamakoshi,A., Tanaka,T., Terpstra,P., Tognoni,A., Tosato,V., Uchiyama,S., Vandenbol,M., Vannier,F., Vassarotti,A., Viari,A., Wambutt,R., Wedler,E., Wedler,H., Weitzenegger,T., Winters,P., Wipat,A., Yamamoto,H., Yamane,K., Yasumoto,K., Yata,K., Yoshida,K., Yoshikawa,H.F., Zumstein,E., Yoshikawa,H. and Danchin,A. Kunst,F., Ogasawara,N., Moszer,I., Albertini,A.M., Alloni,G., Azevedo,V., Bertero,M.G., Bessieres,P., Bolotin,A., Borchert,S ., Borriss,R., Boursier,L., Brans,A., Braun,M., Brignell,S.C., Bron,S., Brouillet,S., Bruschi,C.V., Caldwell,B., Capuano,V., Carter,N.M., Choi,S.K., Codani,J.J., Connerton,I.F., Cummings ,N.J., Daniel,R.A., Denizot,F., Devine,K.M., Dusterhoft,A., TITLE The complete genome sequence of the Gram-positive bacterium Bacillus subtilis JOURNAL Nature 390, 249-256 (1997) STANDARD No information REFERENCE 2 (bases 1 to 213080) AUTHORS Kunst,F., Ogasawara,N., Yoshikawa,H. and Danchin,A. TITLE Direct Submission JOURNAL Submitted (18-NOV-1997) I. Moszer, A. Danchin, Institut Pasteur, Regulation de l'Expression Genetique, 28 rue du Docteur Roux, 75724 Paris Cedex 15, FRANCE. E-mail: moszer@pasteur.fr, adanchin@pasteur.fr Phone: +33 (0)1 45 68 84 41, Fax: +33 (0)1 45 68 89 48 STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: Z99104 GB pos. #s 162609..165534 BASE COUNT 777 a 657 c 920 g 572 t 1833 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGUUAG- --AAAGGGCG CACGGUGGAU 121 G|CCUUGG|C ACUAGG|AG| CC-GAUGAAG GA|CGGG(AC GA-AC-)A|- CCG-AUAUGC 181 UUCGGG|-GA GCU(G-UA-A GCA-)AGCUU UG-AUC-CGG AGAUU|UCCG AAUGGG(GAA 241 A)CCC|ACCA CUC-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --guaaug)- GAGUGGU-AU CC-AUAUCU( 481 GA-AUUCA-- UA)GGA-UAU -GaG--AAG- GCAGAC|CC- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCG GAGGAAGAGA AAGC(-AAAU --)GCGAU|U CC-CUGAGUA GC(GGCGA)G 601 CGA-A-ACGG GA-UUA-GCC CAAAccaaga -gg------- -----(cuug -)-------- 661 ----ccuc-u gggguuguag gacacucugu a--------- ---------- ---------- 721 -----c-gga guuacaaagg aacgaggu-a gauGAAgagg u-c(u-ggaa a)g-gcccgc 781 |c(aua)ggA GG(UAACAGC )CCUGU-Agu c-aaaacuuc guucucuccu ---------- 841 ---------- ----gagugg auccu---GA GUACGGCGGA A(CACGUG-A AA)UUCCGUC 901 GGAAUCC-GG G-AG(GACCA U)CU-CCC-A AGGCUAA--- -AUACUCCCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-GA GAUCCUGAAA CCGU-GUGCC UACAA-G-UA GUCAGAGCCC --g------- 1081 --------(- ---uuaa--) ---------- -----c-gGG UGAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUC- UCGUGC-AAG GUUAAgca-( -gaaga)-ug 1201 c-GGAGCCGC AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC Gc-------- ---------- 1261 ---------- -----au-ga G-UACGUGGU CGUA-GACCC GAAAC-CAG- GUGA-UCUAC 1321 CCAUGUC|CA GGGUGAAGUU CAGG(UAAC) AC-UGAAUGG AGGCCCGAAC C-CACGCAC( 1381 -GUUGAAAA) GUGCG|GGG- AUGAG-GUGU GGGUAGGGGU (-GAAAU)GC CAAUCGAGCC 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCA AGGu---aa| 1501 -gag|UCUUG G|AGGUAG|A GC-ACUGA-U UGGACUA-GG |-GGCCC(cu acc)GGGUUA 1561 CCGAAUUCAG -UCAAACUCC GAA-UG-|CC A-AUG-a--- cuua----u| CCU-UGGGAG 1621 UCAGAC--UG C-GAGU(GAU AAG)AUCCGU -AGUC-GAAA GGG(-AAACA G-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAGUA-UACG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 AGUUGCUUA- GACAACCAGG AUGUUGGC(U UAGAAGCA)G CCAC-CAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CGA GU-GAC-UC- -UGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACGUA-U|C| ACCGAAGCU| GCGG|acugu uc-----(uu c--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --gaacagu- GG-UAGGAGA G|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCUG-U 2341 GAAGCCA-G- A-CC(-GGAA -)GGA--CUG GUGG|AGCGC U-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGA-AA GAGGGG(UGA GAAU)CCCCU C|CACC-GAA UGCCUAAGGU 2461 UUCCUG-AGG AAGG-(CUCG U)CC|G-CUC AGGGUUAGU| CGG|G-ACCU AAGCCGAGGC 2521 C(GAAA)-G- GCGU-AGGCG AUGG-ACAAC AGG-(UU-GA UAUU)C-CUG U|AC|ca-c- 2581 cuccuc-acc --auu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---ugagcaa u------ggg g--gga-cgc aggaggaua- gggu-aa|gc g-cgg(uau- 2761 -uggau-au- --)cc-gcgu -|ccaa---- ---------- ---gcag-uu aggc------ 2821 --uggga-aa uagg(ca-aa -u-)cc|g-- uuucccauaa ---------- ggcu-gagcu 2881 gug-augg|c ga-|------ -------gcg a(aauauag) -uagc----- ------gaag 2941 --uuccu-ga uucc-aca-| cugccaagaa a-agccuc-u a-gcga---- ------gg-u 3001 -gagag--gu g|c|CCGUAC CGCAAACC(G ACACA)GG|U AG-GCGAGG- A-(GAGAA)U 3061 CCUAAGGUGA ||UCGAGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCUCUG--- ---------- ----uuaggg 3181 u(-gcaa-)g cccga----- ---------- --GAGAG-C| C(GCA)GUGA AUAGGCC-CA 3241 GG|CGACU-- ---GU(UUAG CAAAA)ACAC AGGUCUCUG| CGAAGCC(GU AA------)G 3301 GCGAAGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGCGCUUA 3361 GC-------- (G-UAA)--- --------GC GA-AGGUGCG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGCAAC GA-UCUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUU |AUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCGUGG|A GCU-UUACUG C|AGCCUGAU AUU|GAAUGU UGGUACAGCU UGUACAGGAU 3661 AGGUAGGAGC CUUGGAAA-- CCGGAGC(GC CA)GCUUCGG UGGAGGCAUC -G-GUGGGAU 3721 ACUACC|CUG G-CUGUAUUG ACC-UUCUAA -CCCGCC--- -GCCC(--UU -AUC)-GGGC 3781 GGGGA-GACA GUUUCAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(U-A-AAGG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(U UGGAAA)UCA UUCGCA-GA| 3901 GU(G|UAAAG )GCACAAGGG AGCUUGACUG CGAGAC(CUA CAA)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-CAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACG CACCGCUGGU GUACCAGU|U GUUCU(GC-C A-)AGGGCA- UCGCUGGGUA 4381 GCU-AUGUGC GGACGGGAUA AGUGCU(GAA AGCAUCUA)A GCAUGAAGCC CCCCUC|AAG 4441 AUGAGAUUUC C|CA|UUCC- -(-GCAA-)- -GGAA--GU- AAGA|-UC|C CUGA-(AAGA 4501 UG-A)UCAGG -UUGAUAG|G UCUG|AGGUG -GAAGUGUG- -(GCGA-)-- CACAU|GG-A 4561 GCUG|A|CAG AUACUAAUC- GAUCGA-GG| ACUUAA-CCA U-------|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS B.subti.09 4759 bp RNA RNA 20-NOV-1997 DEFINITION Bacillus subtilis.; . ACCESSION Z99104 KEYWORDS . SOURCE Bacillus subtilis. ORGANISM Bacillus subtilis. REFERENCE 1 (bases 1 to 213080) AUTHORS Ehrlich,S.D., Emmerson,P.T., Entian,K.D., Errington,J., Fabret ,C., Ferrari,E., Foulger,D., Fritz,C., Fujita,M., Fujita,Y., Fuma,S., Galizzi,A., Galleron,N., Ghim,S.Y., Glaser,P., Goffeau,A., Golightly,E.J., Grandi,G., Guiseppi,G., Guy,B.J., Haga,K., Haiech,J., Harwood,C.R., Henaut,A., Hilbert,H., Holsappel,S., Hosono,S., Hullo,M.F., Itaya,M., Jones,L., Joris ,B., Karamata,D., Kasahara,Y., Klaerr-Blanchard,M., Klein,C., Kobayashi,Y., Koetter,P., Koningstein,G., Krogh,S., Kumano,M., Kurita,K., Lapidus,A., Lardinois,S., Lauber,J., Lazarevic,V., Lee,S.M., Levine,A., Liu,H., Masuda,S., Mauel,C., Medigue,C., Medina,N., Mellado,R.P., Mizuno,M., Moestl,D., Nakai,S., Noback,M., Noone,D., O'Reilly,M., Ogawa,K., Ogiwara,A., Oudega ,B., Park,S.H., Parro,V., Pohl,T.M., Portetelle,D., Porwollik ,S., Prescott,A.M., Presecan,E., Pujic,P., Purnelle,B., Rapoport,G., Rey,M., Reynolds,S., Rieger,M., Rivolta,C., Rocha ,E., Roche,B., Rose,M., Sadaie,Y., Sato,T., Scanlan,E., Schleich,S., Schroeter,R., Scoffone,F., Sekiguchi,J., Sekowska ,A., Seror,S.J., Serror,P., Shin,B.S., Soldo,B., Sorokin,A., Tacconi,E., Takagi,T., Takahashi,H., Takemaru,K., Takeuchi,M., Tamakoshi,A., Tanaka,T., Terpstra,P., Tognoni,A., Tosato,V., Uchiyama,S., Vandenbol,M., Vannier,F., Vassarotti,A., Viari,A., Wambutt,R., Wedler,E., Wedler,H., Weitzenegger,T., Winters,P., Wipat,A., Yamamoto,H., Yamane,K., Yasumoto,K., Yata,K., Yoshida,K., Yoshikawa,H.F., Zumstein,E., Yoshikawa,H. and Danchin,A. Kunst,F., Ogasawara,N., Moszer,I., Albertini,A.M., Alloni,G., Azevedo,V., Bertero,M.G., Bessieres,P., Bolotin,A., Borchert,S ., Borriss,R., Boursier,L., Brans,A., Braun,M., Brignell,S.C., Bron,S., Brouillet,S., Bruschi,C.V., Caldwell,B., Capuano,V., Carter,N.M., Choi,S.K., Codani,J.J., Connerton,I.F., Cummings ,N.J., Daniel,R.A., Denizot,F., Devine,K.M., Dusterhoft,A., TITLE The complete genome sequence of the Gram-positive bacterium Bacillus subtilis JOURNAL Nature 390, 249-256 (1997) STANDARD No information REFERENCE 2 (bases 1 to 213080) AUTHORS Kunst,F., Ogasawara,N., Yoshikawa,H. and Danchin,A. TITLE Direct Submission JOURNAL Submitted (18-NOV-1997) I. Moszer, A. Danchin, Institut Pasteur, Regulation de l'Expression Genetique, 28 rue du Docteur Roux, 75724 Paris Cedex 15, FRANCE. E-mail: moszer@pasteur.fr, adanchin@pasteur.fr Phone: +33 (0)1 45 68 84 41, Fax: +33 (0)1 45 68 89 48 STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: Z99104 GB pos. #s 168217..171140 BASE COUNT 779 a 658 c 916 g 571 t 1835 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGUUAG- --AAAGGGCG CACGGUGGAU 121 G|CCUUGG|C ACUAGG|AG| CC-GAUGAAG GA|CGGG(AC GA-AC-)A|- CCG-AUAUGC 181 UUCGGG|-GA GCU(G-UA-A GCA-)AGCUU UG-AUC-CGG AGAUU|UCCG AAUGGG(GAA 241 A)CCC|ACCA CUC-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --guaaug)- GAGUGGU-AU CC-AUAUCU( 481 GA-AUUCA-- UA)GGA-UAU -GaG--AAG- GCAGAC|CC- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCG GAGGAAGAGA AAGC(-AAAU --)GCGAU|U CC-CUGAGUA GC(GGCGA)G 601 CGA-A-ACGG GA-UUA-GCC CAAAccaaga -gg------- -----(cuug -)-------- 661 ----ccucuu gggguuguag gacacucugu a--------- ---------- ---------- 721 -----c-gga guuacaaagg aacgaggu-a gauGAAgagg u-c(u-ggaa a)g-gcccgc 781 |c(aua)ggA GG(UAACAGC )CCUGU-Agu c-aaaacuuc guucucuccu ---------- 841 ---------- ----gagugg auccu---GA GUACGGCGGA A(CACGUG-A AA)UUCCGUC 901 GGAAUCC-GG G-AG(GACCA U)CU-CCC-A AGGCUAA--- -AUACUCCCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-GA GAUCCUGAAA CCGU-GUGCC UACAA-G-UA GUCAGAGCCC --g------- 1081 --------(- ---uuaa--) ---------- -----c-gGG UGAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUC- UCGUGC-AAG GUUAAgca-( -gaaga)-ug 1201 c-GGAGCCGC AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC Gc-------- ---------- 1261 ---------- -----au-ga G-UACGUGGU CGUA-GACCC GAAAC-CAG- GUGA-UCUAC 1321 CCAUGUC|CA GGGUGAAGUU CAGG(UAAC) AC-UGAAUGG AGGCCCGAAC C-CACGCAC( 1381 -GUUGAAAA) GUGCG|GGG- AUGAG-GUGU GGGUAGGGGU (-GAAAU)GC CAAUCGAACC 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCA AGGu---aa| 1501 -gag|UCUUG G|AGGUAG|A GC-ACUGA-U UGGACUA-GG |-GGCCC(cu acc)GGGUUA 1561 CCGAAUUCAG -UCAAACUCC GAA-UG-|CC A-AUG-a--- cuua----u| CCU-UGGGAG 1621 UCAGAC--UG C-GAGU(GAU AAG)AUCCGU -AGUC-GAAA GGG(-AAACA G-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAGUA-UACG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 AGUUGCUUA- GACAACCAGG AUGUUGGC(U UAGAAGCA)G CCAC-CAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CGA GU-GAC-UC- -UGG|CCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACGUA-U|C| ACCGAAGCU| GCGG|acugu uc-----(uu c--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --gaacagu- GG-UAGGAGA G|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCUG-U 2341 GAAGCCA-G- A-CC(-GGAA -)GGA--CUG GUGG|AGCGC U-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGA-AA GAGGGG(UGA GAAU)CCCCU C|CACC-GAA UGCCUAAGGU 2461 UUCCUG-AGG AAGG-(CUCG U)CC|G-CUC AGGGUUAGU| CGG|G-ACCU AAGCCGAGGC 2521 C(GAAA)-G- GCGU-AGGCG AUGG-ACAAC AGG-(UU-GA UAUU)C-CUG U|AC|ca-c- 2581 cuccuc-acc --auu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---ugagcaa u------ggg g--gga-cgc aggaggaua- gggu-aa|gc g-cgg(uau- 2761 -uggau-au- --)cc-gcgu -|ccaa---- ---------- ---gcag-uu aggc------ 2821 --uggga-aa uagg(ca-aa -u-)cc|g-- uuucccauaa ---------- ggcu-gagcu 2881 gug-augg|c ga-|------ -------gcg a(aauauag) -uagc----- ------gaag 2941 --uuccu-ga uucc-aca-| cugccaagaa a-agc-uc-u a-gcga---- ------gg-u 3001 -gagag--gu g|c|CCGUAC CGCAAACC(G ACACA)GG|U AG-GCGAGG- A-(GAGAA)U 3061 CCUAAGGUGA ||UCGAGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCCCUG--- ---------- ----uuaggg 3181 u(-gcaa-)- cccga----- ---------- --GAGAA-C| C(GCA)GUGA AUAGGCCcCA 3241 GG|CGACU-- ---GU(UUAG CAAAA)-CAC AGGUCUCUG| CGAAGCC(GU AA------)G 3301 GCGAAGU-AU A-GGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGCGCUUA 3361 GC-------- (G-UAA)--- --------GC GA-AGGUGCG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGCAAC GA-UCUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUU |AUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCGUGG|A GCU-UUACUG C|AGCCUGAU AUU|GAAUGU UGGUACAGCU UGUACAGGAU 3661 AGGUAGGAGC CUUGGAAA-- CCGGAGC(GC CA)-CUUCGG UGGAGGCAUC -G-GUGGGAU 3721 ACUACC|CUG G-CUGUAUUG ACC-UUCUAA -CCCGCC--- -GCCC(--UU -AUC)-GGGC 3781 GGGGA-GACA GUGUCAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAGG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(U UGGAAA)UCA UUCGCA-GA| 3901 GU(G|UAAAG )GCACAAGGG AGCUUGACUG CGAGAC(CUA CAA)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-CAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACG CACCGCUGGU GUACCAGU|U GUUCU(GC-C A-)AGGGCA- UCGCUGGGUA 4381 GCU-AUGUGC GGACGGGAUA AGUGCU(GAA AGCAUCUA)A GCAUGAAGCC CCCCUC|AAG 4441 AUGAGAUUUC C|CA|UUCC- -(-GCAA-)- -GGAA--GU- AAGA|-UC|C CUGA-(AAGA 4501 UG-A)UCAGG -UUGAUAG|G UCUG|AGGUG -GAAGUGUG- -(GCGA-)-- CACAU|GG-A 4561 GCUG|A|CAG AUACUAAUC- GAUCGA-GG| ACUUAA-CCA U-------|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS B.subti.10 4759 bp RNA RNA 20-NOV-1997 DEFINITION Bacillus subtilis.; . ACCESSION Z99104 KEYWORDS . SOURCE Bacillus subtilis. ORGANISM Bacillus subtilis. REFERENCE 1 (bases 1 to 213080) AUTHORS Ehrlich,S.D., Emmerson,P.T., Entian,K.D., Errington,J., Fabret ,C., Ferrari,E., Foulger,D., Fritz,C., Fujita,M., Fujita,Y., Fuma,S., Galizzi,A., Galleron,N., Ghim,S.Y., Glaser,P., Goffeau,A., Golightly,E.J., Grandi,G., Guiseppi,G., Guy,B.J., Haga,K., Haiech,J., Harwood,C.R., Henaut,A., Hilbert,H., Holsappel,S., Hosono,S., Hullo,M.F., Itaya,M., Jones,L., Joris ,B., Karamata,D., Kasahara,Y., Klaerr-Blanchard,M., Klein,C., Kobayashi,Y., Koetter,P., Koningstein,G., Krogh,S., Kumano,M., Kurita,K., Lapidus,A., Lardinois,S., Lauber,J., Lazarevic,V., Lee,S.M., Levine,A., Liu,H., Masuda,S., Mauel,C., Medigue,C., Medina,N., Mellado,R.P., Mizuno,M., Moestl,D., Nakai,S., Noback,M., Noone,D., O'Reilly,M., Ogawa,K., Ogiwara,A., Oudega ,B., Park,S.H., Parro,V., Pohl,T.M., Portetelle,D., Porwollik ,S., Prescott,A.M., Presecan,E., Pujic,P., Purnelle,B., Rapoport,G., Rey,M., Reynolds,S., Rieger,M., Rivolta,C., Rocha ,E., Roche,B., Rose,M., Sadaie,Y., Sato,T., Scanlan,E., Schleich,S., Schroeter,R., Scoffone,F., Sekiguchi,J., Sekowska ,A., Seror,S.J., Serror,P., Shin,B.S., Soldo,B., Sorokin,A., Tacconi,E., Takagi,T., Takahashi,H., Takemaru,K., Takeuchi,M., Tamakoshi,A., Tanaka,T., Terpstra,P., Tognoni,A., Tosato,V., Uchiyama,S., Vandenbol,M., Vannier,F., Vassarotti,A., Viari,A., Wambutt,R., Wedler,E., Wedler,H., Weitzenegger,T., Winters,P., Wipat,A., Yamamoto,H., Yamane,K., Yasumoto,K., Yata,K., Yoshida,K., Yoshikawa,H.F., Zumstein,E., Yoshikawa,H. and Danchin,A. Kunst,F., Ogasawara,N., Moszer,I., Albertini,A.M., Alloni,G., Azevedo,V., Bertero,M.G., Bessieres,P., Bolotin,A., Borchert,S ., Borriss,R., Boursier,L., Brans,A., Braun,M., Brignell,S.C., Bron,S., Brouillet,S., Bruschi,C.V., Caldwell,B., Capuano,V., Carter,N.M., Choi,S.K., Codani,J.J., Connerton,I.F., Cummings ,N.J., Daniel,R.A., Denizot,F., Devine,K.M., Dusterhoft,A., TITLE The complete genome sequence of the Gram-positive bacterium Bacillus subtilis JOURNAL Nature 390, 249-256 (1997) STANDARD No information REFERENCE 2 (bases 1 to 213080) AUTHORS Kunst,F., Ogasawara,N., Yoshikawa,H. and Danchin,A. TITLE Direct Submission JOURNAL Submitted (18-NOV-1997) I. Moszer, A. Danchin, Institut Pasteur, Regulation de l'Expression Genetique, 28 rue du Docteur Roux, 75724 Paris Cedex 15, FRANCE. E-mail: moszer@pasteur.fr, adanchin@pasteur.fr Phone: +33 (0)1 45 68 84 41, Fax: +33 (0)1 45 68 89 48 STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: Z99104 GB pos. #s 173213..176140 BASE COUNT 779 a 656 c 921 g 572 t 1831 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGUUAG- --AAAGGGCG CACGGUGGAU 121 G|CCUUGG|C ACUAGG|AG| CC-GAUGAAG GA|CGGG(AC GA-AC-)A|- CCG-AUAUGC 181 UUCGGG|-GA GCU(G-UA-A GCA-)AGCUU UG-AUC-CGG AGAUU|UCCG AAUGGG(GAA 241 A)CCC|ACCA CUC-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --guaaug)- GAGUGGU-AU CC-AUAUCU( 481 GA-AUUCA-- UA)GGA-UAU -GaG--AAG- GCAGAC|CC- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCG GAGGAAGAGA AAGC(-AAAU --)GCGAU|U CC-CUGAGUA GC(GGCGA)G 601 CGA-A-ACGG GA-UUA-GCC CAAAccaaga -gg------- -----(cuug -)-------- 661 ----ccucuu gggguuguag gacacucugu a--------- ---------- ---------- 721 -----c-gga guuacaaagg aacgaggu-a gauGAAgagg u-c(u-ggaa a)g-gcccgc 781 |c(aua)ggA GG(UAACAGC )CCUGU-Agu c-aaaacuuc guucucuccu ---------- 841 ---------- ----gagugg auccu---GA GUACGGCGGA A(CACGUG-A AA)UUCCGUC 901 GGAAUCC-GG G-AG(GACCA U)CU-CCC-A AGGCUAA--- -AUACUCCCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-GA GAUCCUGAAA CCGU-GUGCC UACAA-G-UA GUCAGAGCCC --g------- 1081 --------(- ---uuaa--) ---------- -----c-gGG UGAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUC- UCGUGC-AAG GUUAAgca-( -gaaga)-ug 1201 c-GGAGCCGC AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC Gc-------- ---------- 1261 ---------- -----au-ga G-UACGUGGU CGUA-GACCC GAAAC-CAG- GUGA-UCUAC 1321 CCAUGUC|CA GGGUGAAGUU CAGG(UAAC) AC-UGAAUGG AGGCCCGAAC C-CACGCAC( 1381 -GUUGAAAA) GUGCG|GGG- AUGAG-GUGU GGGUAGGGGU (-GAAAU)GC CAAUCGAACC 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCA AGGu---aa| 1501 -gag|UCUUG G|AGGUAG|A GC-ACUGA-U UGGACUA-GG |-GGCCC(cu acc)GGGUUA 1561 CCGAAUUCAG -UCAAACUCC GAA-UG-|CC A-AUG-a--- cuua----u| CCU-UGGGAG 1621 UCAGAC--UG C-GAGU(GAU AAG)AUCCGU -AGUC-GAAA GGG(-AAACA G-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAGUA-UACG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 AGUUGCUUA- GACAACCAGG AUGUUGGC(U UAGAAGCA)G CCAC-CAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CGA GU-GAC-UC- -UGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACGUA-U|C| ACCGAAGCU| GCGG|acugu uc-----(uu c--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --gaacagu- GG-UAGGAGA G|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCUG-U 2341 GAAGCCA-G- A-CC(-GGAA -)GGA--CUG GUGG|AGCGC U-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGA-AA GAGGGG(UGA GAAU)CCCCU C|CACC-GAA UGCCUAAGGU 2461 UUCCUG-AGG AAGG-(CUCG U)CC|G-CUC AGGGUUAGU| CGG|G-ACCU AAGCCGAGGC 2521 C(GAAA)-G- GCGU-AGGCG AUGG-ACAAC AGG-(UU-GA UAUU)C-CUG U|AC|ca-c- 2581 cuccuc-acc --auu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---ugagcaa u------ggg g--gga-cgc aggaggaua- gggu-aa|gc g-cgg(uau- 2761 -uggau-au- --)cc-gcgu -|ccaa---- ---------- ---gcag-uu aggc------ 2821 --uggga-aa uagg(ga-aa -u-)cc|g-- uuucccauaa ---------- ggcu-gagcu 2881 gug-augg|c ga-|------ -------gcg a(aauauag) -uagc----- ------gaag 2941 --uuccu-ga uucc-aca-| cugccaagaa a-agccuc-u a-gcga---- ------gg-u 3001 -gagag--gu g|c|CCGUAC CGCAAACC(G ACACA)GG|U AG-GCGAGG- A-(GAGAA)U 3061 CCUAAGGUGA ||UCGAGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCUCUG--- ---------- ----uuaggg 3181 u(-gcaa-)g cccga----- ---------- --GAGAG-C| C(GCA)GUGA AUAGGCC-CA 3241 GG|CGACU-- ---GU(UUAG CAAAA)ACAC AGGUCUCUG| CGAAGCC(GU AA------)G 3301 GCGAAGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGCGCUUA 3361 GC-------- (G-UAA)--- --------GC GA-AGGUGCG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGCAAC GA-UCUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUU |AUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCGUGG|A GCU-UUACUG C|AGCCUGAU AUU|GAAUGU UGGUACAGCU UGUACAGGAU 3661 AGGUAGGAGC CUUGGAAA-- CCGGAGC(GC CA)GCUUCGG UGGAGGCAUC -G-GUGGGAU 3721 ACUACC|CUG G-CUGUAUUG ACC-UUCUAA -CCCGCC--- -GCCC(--UU -AUC)-GGGC 3781 GGGGA-GACA GUGUCAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAGG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(U UGGAAA)UCA UUCGCA-GA| 3901 GU(G|UAAAG )GCACAAGGG AGCUUGACUG CGAGAC(CUA CAA)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-CAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACG CACCGCUGGU GUACCAGU|U GUUCU(GC-C A-)AGGGCA- UCGCUGGGUA 4381 GCU-AUGUGC GGACGGGAUA AGUGCU(GAA AGCAUCUA)A GCAUGAAGCC CCCCUC|AAG 4441 AUGAGAUUUC C|CA|UUCC- -(-GCAA-)- -GGAA--GU- AAGA|-UC|C CUGA-(AAGA 4501 UG-A)UCAGG -UUGAUAG|G UCUG|AGGUG -GAAGUGUG- -(GCGA-)-- CACAU|GG-A 4561 GCUG|A|CAG AUACUAAUC- GAUCGA-GG| ACUUAA-CCA U-------|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS B.subti.11 4759 bp RNA RNA 20-NOV-1997 DEFINITION Bacillus subtilis.; . ACCESSION Z99107 KEYWORDS . SOURCE Bacillus subtilis. ORGANISM Bacillus subtilis. REFERENCE 1 (bases 1 to 213190) AUTHORS ,N.J., Daniel,R.A., Denizot,F., Devine,K.M., Dusterhoft,A., Ehrlich,S.D., Emmerson,P.T., Entian,K.D., Errington,J., Fabret ,C., Ferrari,E., Foulger,D., Fritz,C., Fujita,M., Fujita,Y., Fuma,S., Galizzi,A., Galleron,N., Ghim,S.Y., Glaser,P., Goffeau,A., Golightly,E.J., Grandi,G., Guiseppi,G., Guy,B.J., Haga,K., Haiech,J., Harwood,C.R., Henaut,A., Hilbert,H., Holsappel,S., Hosono,S., Hullo,M.F., Itaya,M., Jones,L., Joris ,B., Karamata,D., Kasahara,Y., Klaerr-Blanchard,M., Klein,C., Kobayashi,Y., Koetter,P., Koningstein,G., Krogh,S., Kumano,M., Kurita,K., Lapidus,A., Lardinois,S., Lauber,J., Lazarevic,V., Lee,S.M., Levine,A., Liu,H., Masuda,S., Mauel,C., Medigue,C., Medina,N., Mellado,R.P., Mizuno,M., Moestl,D., Nakai,S., Noback,M., Noone,D., O'Reilly,M., Ogawa,K., Ogiwara,A., Oudega ,B., Park,S.H., Parro,V., Pohl,T.M., Portetelle,D., Porwollik ,S., Prescott,A.M., Presecan,E., Pujic,P., Purnelle,B., Rapoport,G., Rey,M., Reynolds,S., Rieger,M., Rivolta,C., Rocha ,E., Roche,B., Rose,M., Sadaie,Y., Sato,T., Scanlan,E., Schleich,S., Schroeter,R., Scoffone,F., Sekiguchi,J., Sekowska ,A., Seror,S.J., Serror,P., Shin,B.S., Soldo,B., Sorokin,A., Tacconi,E., Takagi,T., Takahashi,H., Takemaru,K., Takeuchi,M., Tamakoshi,A., Tanaka,T., Terpstra,P., Tognoni,A., Tosato,V., Uchiyama,S., Vandenbol,M., Vannier,F., Vassarotti,A., Viari,A., Wambutt,R., Wedler,E., Wedler,H., Weitzenegger,T., Winters,P., Wipat,A., Yamamoto,H., Yamane,K., Yasumoto,K., Yata,K., Yoshida,K., Yoshikawa,H.F., Zumstein,E., Yoshikawa,H. and Danchin,A. Kunst,F., Ogasawara,N., Moszer,I., Albertini,A.M., Alloni,G., Azevedo,V., Bertero,M.G., Bessieres,P., Bolotin,A., Borchert,S ., Borriss,R., Boursier,L., Brans,A., Braun,M., Brignell,S.C., Bron,S., Brouillet,S., Bruschi,C.V., Caldwell,B., Capuano,V., Carter,N.M., Choi,S.K., Codani,J.J., Connerton,I.F., Cummings TITLE Bacillus subtilis The complete genome sequence of the Gram-positive bacterium JOURNAL Nature 390, 249-256 (1997) STANDARD No information REFERENCE 2 (bases 1 to 213190) AUTHORS Kunst,F., Ogasawara,N., Yoshikawa,H. and Danchin,A. TITLE Direct Submission JOURNAL Submitted (18-NOV-1997) I. Moszer, A. Danchin, Institut Pasteur, Regulation de l'Expression Genetique, 28 rue du Docteur Roux, 75724 Paris Cedex 15, FRANCE. E-mail: moszer@pasteur.fr, adanchin@pasteur.fr Phone: +33 (0)1 45 68 84 41, Fax: +33 (0)1 45 68 89 48 STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: Z99107 BASE COUNT 778 a 658 c 921 g 571 t 1831 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGUUAG- --AAAGGGCG CGCGGUGGAU 121 G|CCUUGG|C ACUAGG|AG| CC-GAUGAAG GA|CGGG(AC GA-AC-)A|- CCG-AUAUGC 181 UUCGGG|-GA GCU(G-UA-A GCA-)AGCUU UG-AUC-CGG AGAUU|UCCG AAUGGG(GAA 241 A)CCC|ACCA CUC-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --guaaug)- GAGUGGU-AU CC-AUAUCU( 481 GA-AUUCA-- UA)GGA-UAU -GaG--AAG- GCAGAC|CC- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCG GAGGAAGAGA AAGC(-AAAU --)GCGAU|U CC-CUGAGUA GC(GGCGA)G 601 CGA-A-ACGG GA-UUA-GCC CAAAccaaga -gg------- -----(cuug -)-------- 661 ----ccucuu gggguuguag gacacucugu a--------- ---------- ---------- 721 -----c-gga guuacaaagg aacgaggu-a gauGAAgagg u-c(u-ggaa a)g-gcccgc 781 |c(aua)ggA GG(UAACAGC )CCUGU-Agu c-aaaacuuc guucucuccu ---------- 841 ---------- ----gagugg auccu---GA GUACGGCGGA A(CACGUG-A AA)UUCCGUC 901 GGAAUCC-GG G-AG(GACCA U)CU-CCC-A AGGCUAA--- -AUACUCCCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-GA GAUCCUGAAA CCGU-GUGCC UACAA-G-UA GUCAGAGCCC --g------- 1081 --------(- ---uuaa--) ---------- -----c-ggG UGAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUC- CCGUGC-AAG GUUAAgca-( -gaaga)-ug 1201 c-GGAGCCGC AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC Gc-------- ---------- 1261 ---------- -----au-ga G-UACGUGGU CGUA-GACCC GAAAC-CAG- GUGA-UCUAC 1321 CCAUGUC|CA GGGUGAAGUU CAGG(UAAC) AC-UGAAUGG AGGCCCGAAC C-CACGCAC( 1381 -GUUGAAAA) GUGCG|GGG- AUGAG-GUGU GGGUAGGGGU (-GAAAU)GC CAAUCGAACC 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCA AGGu---aa| 1501 -gag|UCUUG G|AGGUAG|A GC-ACUGA-U UGGACUA-GG |-GGCCC(cu acc)GGGUUA 1561 CCGAAUUCAG -UCAAACUCC GAA-UG-|CC A-AUG-a--- cuua----u| CCU-UGGGAG 1621 UCAGAC--UG C-GAGU(GAU AAG)AUCCGU -AGUC-GAAA GGG(-AAACA G-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAGUA-UACG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 AGUUGCUUA- GACAACCAGG AUGUUGGC(U UAGAAGCA)G CCAC-CAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CGA GU-GAC-UC- -UGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACGUA-U|C| ACCGAAGCU| GCGG|acugu uc-----(uu c--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --gaacagu- GG-UAGGAGA G|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCUG-U 2341 GAAGCCA-G- A-CC(-GGAA -)GGA--CUG GUGG|AGCGC U-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGA-AA GAGGGG(UGA GAAU)CCCCU C|CACC-GAA UGCCUAAGGU 2461 UUCCUG-AGG AAGG-(CUCG U)CC|G-CUC AGGGUUAGU| CGG|G-ACCU AAGCCGAGGC 2521 C(GAAA)-G- GCGU-AGGCG AUGG-ACAAC AGG-(UU-GA UAUU)C-CUG U|AC|ca-c- 2581 cuccuc-acc --auu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---ugagcaa u------ggg g--gga-cgc aggaggaua- gggu-aa|gc g-cgg(uau- 2761 -uggau-au- --)cc-gcgu -|ccaa---- ---------- ---gcag-uu aggc------ 2821 --uggga-aa uagg(ca-aa -u-)cc|g-- uuucccauaa ---------- ggcu-gagcu 2881 gug-augg|c ga-|------ -------gcg a(aauauag) -uagc----- ------gaag 2941 --uuccu-ga uucc-aca-| cugccaagaa a-agccuc-u a-gcga---- ------gg-u 3001 -gagag--gu g|c|CCGUAC CGCAAACC(G ACACA)GG|U AG-GCGAGG- A-(GAGAA)U 3061 CCUAAGGUGA ||UCGAGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCUCUG--- ---------- ----uuaggg 3181 u(-gcaa-)g cccga----- ---------- --GAGAG-C| C(GCA)GUGA AUAGGCC-CA 3241 GG|CGACU-- ---GU(UUAG CAAAA)ACAC AGGUCUCUG| CGAAGCC(GU AA------)G 3301 GCGAAGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGCGCUUA 3361 GC-------- (G-UAA)--- --------GC GA-AGGUGCG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGCAAC GA-UCUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUU |AUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCGUGG|A GCU-UUACUG C|AGCCUGAU AUU|GAAUGU UGGUACAGCU UGUACAGGAU 3661 AGGUAGGAGC CUUGGAAA-- CCGGAGC(GC CA)GCUUCGG UGGAGGCAUC -G-GUGGGAU 3721 ACUACC|CUG G-CUGUAUUG ACC-UUCUAA -CCCGCC--- -GCCC(--UU -AUC)-GGGC 3781 GGGGA-GACA GUGUCAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAGG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(U UGGAAA)UCA UUCGCA-GA| 3901 GU(G|UAAAG )GCACAAGGG AGCUUGACUG CGAGAC(CUA CAA)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-CAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACG CACCGCUGGU GUACCAGU|U GUUCU(GC-C A-)AGGGCA- UCGCUGGGUA 4381 GCU-AUGUGC GGACGGGAUA AGUGCU(GAA AGCAUCUA)A GCAUGAAGCC CCCCUC|AAG 4441 AUGAGAUUUC C|CA|UUCC- -(-GCAA-)- -GGAA--GU- AAGA|-UC|C CUGA-(AAGA 4501 UG-A)UCAGG -UUGAUAG|G UCUG|AGGUG -GAAGUGUG- -(GCGA-)-- CACAU|GG-A 4561 GCUG|A|CAG AUACUAAUC- GAUCGA-GG| ACUUAA-CCA U-------|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS B.subti.12 4759 bp RNA RNA 20-NOV-1997 DEFINITION Bacillus subtilis.; . ACCESSION Z99108 KEYWORDS . SOURCE Bacillus subtilis. ORGANISM Bacillus subtilis. REFERENCE 1 (bases 1 to 208430) AUTHORS Carter,N.M., Choi,S.K., Codani,J.J., Connerton,I.F., Cummings ,N.J., Daniel,R.A., Denizot,F., Devine,K.M., Dusterhoft,A., Ehrlich,S.D., Emmerson,P.T., Entian,K.D., Errington,J., Fabret ,C., Ferrari,E., Foulger,D., Fritz,C., Fujita,M., Fujita,Y., Fuma,S., Galizzi,A., Galleron,N., Ghim,S.Y., Glaser,P., Goffeau,A., Golightly,E.J., Grandi,G., Guiseppi,G., Guy,B.J., Haga,K., Haiech,J., Harwood,C.R., Henaut,A., Hilbert,H., Holsappel,S., Hosono,S., Hullo,M.F., Itaya,M., Jones,L., Joris ,B., Karamata,D., Kasahara,Y., Klaerr-Blanchard,M., Klein,C., Kobayashi,Y., Koetter,P., Koningstein,G., Krogh,S., Kumano,M., Kurita,K., Lapidus,A., Lardinois,S., Lauber,J., Lazarevic,V., Lee,S.M., Levine,A., Liu,H., Masuda,S., Mauel,C., Medigue,C., Medina,N., Mellado,R.P., Mizuno,M., Moestl,D., Nakai,S., Noback,M., Noone,D., O'Reilly,M., Ogawa,K., Ogiwara,A., Oudega ,B., Park,S.H., Parro,V., Pohl,T.M., Portetelle,D., Porwollik ,S., Prescott,A.M., Presecan,E., Pujic,P., Purnelle,B., Rapoport,G., Rey,M., Reynolds,S., Rieger,M., Rivolta,C., Rocha ,E., Roche,B., Rose,M., Sadaie,Y., Sato,T., Scanlan,E., Schleich,S., Schroeter,R., Scoffone,F., Sekiguchi,J., Sekowska ,A., Seror,S.J., Serror,P., Shin,B.S., Soldo,B., Sorokin,A., Tacconi,E., Takagi,T., Takahashi,H., Takemaru,K., Takeuchi,M., Tamakoshi,A., Tanaka,T., Terpstra,P., Tognoni,A., Tosato,V., Uchiyama,S., Vandenbol,M., Vannier,F., Vassarotti,A., Viari,A., Wambutt,R., Wedler,E., Wedler,H., Weitzenegger,T., Winters,P., Wipat,A., Yamamoto,H., Yamane,K., Yasumoto,K., Yata,K., Yoshida,K., Yoshikawa,H.F., Zumstein,E., Yoshikawa,H. and Danchin,A. Kunst,F., Ogasawara,N., Moszer,I., Albertini,A.M., Alloni,G., Azevedo,V., Bertero,M.G., Bessieres,P., Bolotin,A., Borchert,S ., Borriss,R., Boursier,L., Brans,A., Braun,M., Brignell,S.C., Bron,S., Brouillet,S., Bruschi,C.V., Caldwell,B., Capuano,V., TITLE The complete genome sequence of the Gram-positive bacterium Bacillus subtilis JOURNAL Nature 390, 249-256 (1997) STANDARD No information REFERENCE 2 (bases 1 to 208430) AUTHORS Kunst,F., Ogasawara,N., Yoshikawa,H. and Danchin,A. TITLE Direct Submission JOURNAL Submitted (18-NOV-1997) I. Moszer, A. Danchin, Institut Pasteur, Regulation de l'Expression Genetique, 28 rue du Docteur Roux, 75724 Paris Cedex 15, FRANCE. E-mail: moszer@pasteur.fr, adanchin@pasteur.fr Phone: +33 (0)1 45 68 84 41, Fax: +33 (0)1 45 68 89 48 STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: Z99108 BASE COUNT 778 a 658 c 921 g 572 t 1830 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGUUAG- --AAAGGGCG CACGGUGGAU 121 G|CCUUGG|C ACUAGG|AG| CC-GAUGAAG GA|CGGG(AC GA-AC-)A|- CCG-AUAUGC 181 UUCGGG|-GA GCU(G-UA-A GCA-)AGCUU UG-AUC-CGG AGAUU|UCCG AAUGGG(GAA 241 A)CCC|ACCA CUC-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --guaaug)- GAGUGGU-AU CC-AUAUCU( 481 GA-AUUCA-- UA)GGA-UAU -GaG--AAG- GCAGAC|CC- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCG GAGGAAGAGA AAGC(-AAAU --)GCGAU|U CC-CUGAGUA GC(GGCGA)G 601 CGA-A-ACGG GA-UUA-GCC CAAAccaaga -gg------- -----(cuug -)-------- 661 ----ccucuu gggguuguag gacacucugu a--------- ---------- ---------- 721 -----c-gga guuacaaaag aacgaggu-a gauGAAgagg u-c(u-ggaa a)gggcccgc 781 |c(aua)ggA GG(UAACAGC )CCUGU-Agu c-aaaacuuc guucucuccu ---------- 841 ---------- ----gagugg auccu---GA GUACGGCGGA A(CACGUG-A AA)UUCCGUC 901 GGAAUCC-GG G-AG(GACCA U)CU-CCC-A AGGCUAA--- -AUACUCCCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-GA GAUCCUGAAA CCGU-GUGCC UACAA-G-UA GUCAGAGCCC --g------- 1081 --------(- ---uuaa--) ---------- -----c-ggG UGAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUC- CCGUGC-AAG GUUAAgca-( -gaaga)-ug 1201 c-GGAGCCGC AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC Gc-------- ---------- 1261 ---------- -----au-ga G-UACGUGGU CGUA-GACCC GAAAC-CAG- GUGA-UCUAC 1321 CCAUGUC|CA GGGUGAAGUU CAGG(UAAC) AC-UGAAUGG AGGCCCGAAC C-CACGCAC( 1381 -GUUGAAAA) GUGCG|GGG- AUGAG-GUGU GGGUAGGGGU (-GAAAU)GC CAAUCGAACC 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCA AGGu---aa| 1501 -gag|UCUUG G|AGGUAG|A GC-ACUGA-U UGGACUA-GG |-GGCCC(cu acc)GGGUUA 1561 CCGAAUUCAG -UCAAACUCC GAA-UG-|CC A-AUG-a--- cuua----u| CCU-UGGGAG 1621 UCAGAC--UG C-GAGU(GAU AAG)AUCCGU -AGUC-GAAA GGG(-AAACA G-)CCCAGAC 1681 CGCCAGCUAA G-GU|CCCA- AAGUA-UACG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 AGUUGCUUA- GACAACCAGG AUGUUGGC(U UAGAAGCA)G CCAC-CAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CGA GU-GAC-UC- -UGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACGUA-U|C| ACCGAAGCU| GCGG|acugu uc-----(uu c--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --gaacagu- GG-UAGGAGA G|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCUG-U 2341 GAAGCCA-G- A-CC(-GGAA -)GGA--CUG GUGG|AGCGC U-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGA-AA GAGGGG(UGA GAAU)CCCCU C|CACC-GAA UGCCUAAGGU 2461 UUCCUG-AGG AAGG-(CUCG U)CC|G-CUC AGGGUUAGU| CGG|G-ACCU AAGCCGAGGC 2521 C(GAAA)-G- GCGU-AGGCG AUGG-ACAAC AGG-(UU-GA UAUU)C-CUG U|AC|ca-c- 2581 cuccuc-acc --auu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---ugagcaa u------ggg g--gga-cgc aggaggaua- gggu-aa|gc g-cgg(uau- 2761 -uggau-au- --)cc-gcgu -|ccaa---- ---------- ---gcag-uu aggc------ 2821 --uggga-aa uagg(ca-aa -u-)cc|g-- uuucccauaa ---------- ggcu-gagcu 2881 gug-augg|c ga-|------ -------gcg a(aauauag) -uagc----- ------gaag 2941 --uuccu-ga uucc-aca-| cugccaagaa a-agccuc-u a-gcga---- ------gg-u 3001 -gagag--gu g|c|CCGUAC CGCAAACC(G UCACA)GG|U AG-GCGAGG- A-(GAGAA)U 3061 CCUAAGGUGA ||UCGAGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCUCUG--- ---------- ----uuaggg 3181 u(-gcaa-)g cccga----- ---------- --GAGAG-C| C(GCA)GUGA AUAGGCC-CA 3241 GG|CGACU-- ---GU(UUAG CAAAA)ACAC AGGUCUCUG| CGAAGCC(GU AA------)G 3301 GCGAAGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGCGCUUA 3361 GC-------- (G-UAA)--- --------GC GA-AGGUGCG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGCAAC GA-UCUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUU |AUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCGUGG|A GCU-UUACUG C|AGCCUGAU AUU|GAAUGU UGGUACAGCU UGUACAGGAU 3661 AGGUAGGAGC CUUGGAAA-- CCGGAGC(GC CA)GCUUCGG UGGAGGCAUC -G-GUGGGAU 3721 ACUACC|CUG G-CUGUAUUG ACC-UUCUAA -CCCGCC--- -GCCC(--UU -AUC)-GGGC 3781 GGGGA-GACA GUGUCAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAGG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(U UGGAAA)UCA UUCGCA-GA| 3901 GU(G|UAAAG )GCACAAGGG AGCUUGACUG CGAGAC(CUA CAA)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-CAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACG CACCGCUGGU GUACCAGU|U GUUCU(GC-C A-)AGGGCA- UCGCUGGGUA 4381 GCU-AUGUGC GGACGGGAUA AGUGCU(GAA AGCAUCUA)A GCAUGAAGCC CCCCUC|AAG 4441 AUGAGAUUUC C|CA|UUCC- -(-GCAA-)- -GGAA--GU- AAGA|-UC|C CUGA-(AAGA 4501 UG-A)UCAGG -UUGAUAG|G UCUG|AGGUG -GAAGUGUG- -(GCGA-)-- CACAU|GG-A 4561 GCUG|A|CAG AUACUAAUC- GAUCGA-GG| GCUUAA-CCA U-------|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS L.monocy.1 4759 bp RNA RNA 11-JAN-191 DEFINITION Listeria monocytogenes. ACCESSION No information KEYWORDS No information. SOURCE Listeria monocytogenes. ORGANISM Listeria monocytogenes. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X64533 ID LM23SRDNA standard; DNA; PRO; 2928 BP. XX AC X64533; XX DT 22-SEP-1992 (Rel. 33, Created) DT 22-SEP-1992 (Rel. 33, Last updated, Version 4) XX DE L.monocytogenes 23S ribosomal DNA XX KW 23S ribosomal RNA; ribosomal RNA. XX OS Listeria monocytogenes OC Prokaryota; Bacteria; Firmicutes; Regular asporogenous rods. XX RN [1] RP 1-2928 RA Balsdon J.T.; RT ; RL Submitted (19-FEB-1992) on tape to the EMBL Data Library by: RL J.T. Balsdon, AFRC Inst of Food Res, Reading Laboratory, RL Microbiology Department, Earley Gate, Whiteknights Road, Reading RL RG6 2EF, UK XX RN [2] RP 1-2928 RA Thompson D.E., Balsdon J.T., Cai J., Collins M.D.; RT "Studies on the ribosomal RNA operons of Listeria monocytogenes"; RL FEMS Microbiol. Lett. 96:219-224(1992). XX CC *source: clone_library=genomic; CC *source: clone=LM149; XX FH Key Location/Qualifiers FH FT rRNA 1..2928 FT /product="23S ribosomal RNA" XX SQ Sequence 2928 BP; 819 A; 621 C; 898 G; 590 T; 0 other; BASE COUNT 819 a 621 c 898 g 590 t 1831 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGUUAG- --AAAGGGCG CACGGUGGAU 121 G|CCUUGG|C ACUAGG|AG| CC-GAAGAAG GA|CGGG(AC UA-AC-)A|- CCG-AUAUGC 181 UUUGGG|-GA GCU(G-UA-C GUA-)AGCGU UG-AUC-CAG AGAUU|UCCG AAUGGG(GGA 241 A)CCC|ACUA UCU-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --uuaguc)- GGAUAGU-AU CC-UUACGU( 481 GA-AUACA-- UA)GCG-UGA -G-G--AAG- GCAGAC|CC- AGGGAACU|G A(AACA)UCU 541 AAGUA-CCUG GAGGAAGAGA AAGA(-AAAA --)UCGAU|U UC-CUGAGUA GC(GGCGA)G 601 CGA-A-ACGG AA-AGA-GCC CAAAccaaga -ag------- -----(cuug -)-------- 661 ----cuucuu gggguuguag gacacucuau a--------- ---------- ---------- 721 ----cggagu ua--caaaag aaaguuau-a aauGAAgcgg u-c(u-ggaa a)g-gcccgc 781 |c(aaa)gaC GG(UAACAGC )CCGGU-Agu u-gaaauggc uuucccucca ---------- 841 ---------- ----gagugg auccu---GA GUACGGCGGA A(CACGUG-A AA)UUCCGUC 901 GGAAUCC-GG G-AG(GACCA U)CU-CCC-A AGGCUAA--- -AUACUCCCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGa- 1021 -GUGAAAaCA GUUCCUGAAA CCGU-GUGCC UACAA-G-UA GUUAGAGCCC --G------- 1081 --------(- ---uuaa--) ---------- -----U-GGG UGAUAGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUU- UGUUGC-AAG GUUAAgcg-( -gaaaa)-ag 1201 c-GGAGCCGU AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC GC-------- ---------- 1261 ---------- -----au-aa G-UAACAGGU CGUA-GACC- GAAAC-CAG- GUGA-UCUAC 1321 CCAUGUC|CA GGAUGAAGGU AAGG(UAAU) AC-UUACUGG AGGUCCGAAC C-CACGCAC( 1381 -GUUGAAAA) GUGCG|GGG- AUGAG-GUGU GGGUAGCGGA (-GAAAU)UC CAAUCGAACU 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCG AGGua--aa| 1501 -gag|UCaUG G|AGGUAG|A GC-ACUGU-U UGGACUA-GG |-GGCCC(uu cuc)GGGUUA 1561 CCGAAUUCAG -AUAAACUCC GAA-UG-|CC A-u-gua--- cuua----u| acu-cGGGAG 1621 UCAGAC--UG C-GAGU(GAU AAG)AUCCGU -AGUC-GAAA GGG(-AAACA G-)CCCAGAC 1681 CACCAGUUAA G-GU|CCCC- AAAUA-UAUG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 GGUUGCUUA- GACAACCAGG AUGUUGGC(U UAGAAGCA)G CCAC-CAU|U (GAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CGA GU-GAC-CC- -CGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACAUA-U|U| ACCGAAACU| GUGG|augaa ccuc---(uu ua-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- gagguucgu- GG-UAGGAGA G|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCGG-U 2341 GAAGUCA-G- A-CC(-GGAA -)GGA--CUG GUGG|AGCGC U-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGA-AA GAAGGG(UGA GAAU)CCCUU C|CACC-GAA UAUCUAAGGU 2461 UUCCUG-AGG AAGG-(CUCG U)CC|G-CUC AGGGUUAGU| CGG|G-ACCU AAGCCGAGGC 2521 C(GAUA)--- -CGU-AGGCG AUGG-ACAAC AGG-(UA-GA GAUU)C-CUG U|AC|ca-g- 2581 ug-cua-auu g-uuu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ----aaccga u------ggg g--uga-cac agaaggaua- ggga-au|-c g-cac(gaa- 2761 -uggaa-au- --)gu-gcgu -|ccaa---- ---------- ---gcag-ug agug------ 2821 --ugaga-ag uagg(ca-aa -u-)cc|g-- cuucucgcga ---------a gcau-gagcu 2881 gug-augg|g ga-|------ -------agg a(aauuaag) -uacg----- ------gaag 2941 --uuccu-ga uuuc-acg-| cugucaagaa a-agccuc-u a-ggaa---- ------ga-g 3001 -uagua--cu g|c|CCGUAC CGCAAACC(G ACACA)GG|U AG-AUGAGG- A-(GAGAA)U 3061 CCUAAGGUGA ||GCGAGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCUCU---- ---------- ---auuaggg 3181 u(-gcaa-)g cccgag---- ---------- ---AGAG-C| C(GCA)GUGA AUAGGCC-CA 3241 GG|CGACU-- ---GU(UUAG CAAAA)ACAC AGGUCUCUG| CAAAACC(GU AA------)G 3301 GUGACGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGUGCUUA 3361 GC-------- (U-UCG)--- --------GC GA-AGGUACG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGCAAC GA-UCUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUU |AUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCGUGG|A GCU-UUACUG C|AACCUGAU AUG|GAAUGU UUGUACCGCU UGUACAGGAU 3661 AGGUAGGAGC CGAAGAGA-- CGUGUGC(GC UA)GCAUACG AGGAGGCAAU -G-GUGGGAU 3721 ACUACC|CUG G-CUGUAUGA CCA-UUCUAA -CCCGCA--- -Cuu----ag -cgc)----G 3781 UGGGGaGACA GUGUCAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AGAG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(A UGGAAA)UCA UUCGCA-GA| 3901 GU(G|UAAAG )GCACAAGGG AGCUUGACUG CGAGAC(UGA CAA)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGCAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-CAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACA CACCGCUGGU GUACCAGU|U GUUCC(GC-C A-)GGAGCA- UCGCUGGGUA 4381 GCU-AUGUGU GGCAGGGAUA AACGCU(GAA AGCAUCUA)A GCGUGAAGCC CCCCUC|AAG 4441 AUGAGAUUUC C|CA|UUUC- -(-UUCG-)- -GAAA--GU- AAGA|-UC|C CUGA-(AAGA 4501 UG-A)UCAGG -UAGAUAG|G UUUG|GAGUG -GAAGUGUA- -(GCGA-)-- UACAU|GG-A 4561 GCGG|A|CAA AUACUAAUC- GAUCGA-GG| ACUUAA-CCA AA------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS L.monocy.2 4759 bp RNA RNA 11-JAN-191 DEFINITION Listeria monocytogenes. ACCESSION No information KEYWORDS No information. SOURCE Listeria monocytogenes. ORGANISM Listeria monocytogenes. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X68420 ID LM23SRRN standard; DNA; PRO; 2932 BP. XX AC X68420; XX DT 29-MAR-1993 (Rel. 35, Created) DT 29-MAR-1993 (Rel. 35, Last updated, Version 2) XX DE L.monocytogenes gene for 23S rRNA XX KW 23S ribosomal RNA. XX OS Listeria monocytogenes OC Prokaryota; Bacteria; Firmicutes; Regular asporogenous rods. XX RN [1] RP 1-2932 RA Ludwig W.; RT ; RL Submitted (08-SEP-1992) on tape to the EMBL Data Library by: RL W. Ludwig, Lehrst. fuer Mikrobiologie TU Muenchen, Arcisstr. 21, RL 8000 Muenchen 2, FRG XX RN [2] RP 1-2932 RA Ludwig W., Kirchof G., Klugbauer N., Weizenegger M., Betzl D., RA Ehrmann M., Hertel C., Jilg S., Tatzel R., Zitzelsberger H., RA Liebl S., Hochberger M., Shah J., Lane D., Wallnoef P.R.; RT "Complete 23S ribosomal RNA sequences of Gram-positive Bacteria RT with a low DNA G+C content"; RL Syst. Appl. Microbiol. 15:487-501(1992). XX CC *source: strain=ATCC 19115; XX FH Key Location/Qualifiers FH FT rRNA 1..2932 FT /product="23S ribosomal RNA" XX SQ Sequence 2932 BP; 789 A; 648 C; 899 G; 596 T; 0 other; BASE COUNT 789 a 648 c 899 g 596 t 1827 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGUUAG- --AAAGGGCG CAUGGUGGAU 121 G|CCUUGG|C ACUAGG|AG| CC-UAAGAAG GA|CGGC(AC UA-AC-)A|- CCG-AUAUGC 181 UCCGGG|-GA GCU(G-UA-A GUA-)AGCUU UG-AUC-CGG AGAUU|UCCG AAUGGG(GAA 241 A)CCC|ACUG UCC-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --auaaug)- GGACAGU-AC GU-UUACGU( 481 GA-AUACA-- UA)GCG-UAA -A-C--GAG- GCACAC|CC- GGAGAACU|G A(AACA)UCU 541 AAGUA-UCCG GAGGAAUAGA AAGA(-AAAA --)UCGAU|U CC-CUGAGUA GC(GGCGA)G 601 CGA-AAC-GG GA-AGA-GCC CAAAccaaga -ag------- -----(cuug -)-------- 661 ----cuucuu gggguuguag gacacucuau ---------- ---------- ---------- 721 -----acgga guuacaaagg aauggauu-a gacgaagcga c-c(u-ggaa a)g-guccgc 781 |c(gua)gcG GG(UAAAAGC )CCCGU-Agu c-gaaaauuc auucucucca ---------- 841 ---------- ----gagugu auccu---GA GUACGGCGGA A(CACGUG-A AA)UUCCGUC 901 GGAAUCC-GG G-AG(GACCA U)CU-CCC-A AGGCUAA--- -AUACUCCCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-UA GAUCCUGAAA CCAU-GUGCC UACAA-G-UU GUCAGAGCCC --G------- 1081 --------(- ---uuaa--) ---------- -----U-GGG UGAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUU- CCAUGC-AAG GUUAAGCa-( -gagaa)-uG 1201 C-GGAGCCGC AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC GA-------- ---------- 1261 ---------- -----ua-ga G-UAUGGGGU CGUA-GACCC GAAAC-CAG- GUGA-UCUAC 1321 CCAUGUC|CA GGGUGAAGGU AAGG(UAAC) AC-UUACUGG AGGCCCGAAC C-CACGUAC( 1381 -GUUGAAAA) GUGCG|GGG- AUGAG-GUGU GGGUAGCGGU (-GAAAU)UC CAAUCGAACC 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCA AAcuu--aa| 1501 -gaa|ucucG G|AGGUAG|A GC-ACUGU-U UGGACUA-GG |-GGCCC(au ccc)GGGUUA 1561 CCGAAUUCAG -ACAAACUCC GAA-UG-|cc g-aug-a--- uuua----u| guu-ugggAG 1621 UCAGAC--UG C-GGGU(GAU AAG)AUCCGU -AGUC-GAGA GGG(-AAACA G-)CCCAGAC 1681 CACCAGUUAA G-GU|CCCC- AAGUA-UUCG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 CGUUGCCCA- GACAACCAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CGA GU-GGC-GC- -UGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACGAA-U|C| ACCGAAACU| GUGG|auuga cauc---(uu a--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- gaugucagu- GG-UAGGAGA G|-----CGU 2221 U-CCA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCGU-C 2341 GAAGCUA-G- A-CC(-GUAA -)GGA--CUG GUGG|AGCGC U-UGGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGAA-A GAAGGG(UGA GAAU)CCCUU C|CACC-GAA UGCCCAAGGU 2461 UUCCUG-AGG AAGG-(CUCG U)CC|G-CUC AGGGUUAGU| CAG|G-ACCU AAGUUGAGGC 2521 C(GAAA)-G- GCGU-AGACG AUGG-ACAAC AGG-(UU-GA UAUU)C-CUG U|AC|ca-c- 2581 cu-ccc-cgc c--------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 guuugagcaa u------ggg g--uga-cgc aguaggaua- gggu-ga|gc g-cgc(ugu- 2761 -ugguu-au- --)gc-gcgu -|cuaa---- ---------- ---gcag-ug aggug----- 2821 --ugaaa-ug a-gg(ca-aa -u-)cc|c-- a-uuucuaua a--------- cauu-gagcu 2881 gug-auag|c aa-|------ ------gggg a(-uuua--) ucccu----- ------gagu 2941 --c-ccu-ga uuuc-acg-| cugccaagaa a-agccuc-u a-gcga---- ------gg-c 3001 -gggag--gu g|c|CUGUAC CGCAAACC(G ACACA)GG|U AG-GCGAGG- A-(GAGAA)U 3061 CCUAAGGUGA ||UCGAGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |gcucug--- ---------- ---guagggu 3181 g(-uuaa-)a gcccga---- ---------- --gagag-C| C(GCA)GUGA AUAGGCC-CA 3241 GG|CGACU-- ---GU(UUAG CAAAA)ACAC AGGUCUCUG| CAAAACC(GC AA------)G 3301 GUGAAGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGAGGUCA 3361 GC-------- (G-CAA)--- --------GC GA-AGCUUCG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGUAAC GA-UCUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUU |AUAAUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCGUGG|A GCU-UUACUG U|AACCUGAU AUU|GAAUUC CGGUGCAGCC UGUACAGGAU 3661 AGGUAGGAGC CUUGGAUU-- CCGGAGC(GC UA)GCUUCGG AUGAGGCGUU -G-GUGGGAU 3721 ACUACC|CUG G-CUGUAUUG GAC-UUCUAA -CCCAUG--- -CCCC(--UU -AUC)-GGGG 3781 CAGGA-GACA GUGUCAGGCG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AGAG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(U CGGACA)UCA UUCGUA-GA| 3901 GU(G|CAAAG )GCAUAAGGG AGCUUGACUG CGAGAC(CUA CAA)GUCGAG CAGGGUC(GA 3961 AA)GA-CGGG |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-CAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACA UACCUCUGGU GUACCAGU|U GUCUU(GC-C A-)AAGGCA- UCGCUGGGUA 4381 GCU-AUGUAU GGACGGGAUA AAUGCU(GAA AGCAUCUA)A GCAUGAAGCC CCCCUC|GAG 4441 AUGAGAUUUC C|CA|UUAC- -(-GCAA-)- -GUAA--GU- AAGA|-UC|C CUCA-(AAGA 4501 AG-A)UGAGG -UUGAUAG|G UCUG|GGGUG -GAAGCGCG- -(GCGA-)-- CGUGU|GG-A 4561 GCUG|A|CGG AUACUAAUC- GAUCGA-GG| ACUUAA-CCA A-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS L.monocy.3 4759 bp RNA RNA 31-MAR-1996 DEFINITION Listeria monocytogenes.; 23S ribosomal RNA; 23S rRNA gene. ACCESSION X92951 KEYWORDS 23S ribosomal RNA; 23S rRNA gene. SOURCE Listeria monocytogenes. ORGANISM Listeria monocytogenes. REFERENCE 1 (bases 1 to 2660) AUTHORS Sallen,B., Rajoharison,A., Desvarenne,S., Quinn,F. and Mabilat,C. TITLE Comparative Analysis of 16S and 23S Ribosomal RNA Sequences of Listeria Species JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2660) AUTHORS Mabilat,C. TITLE Direct Submission JOURNAL Submitted (09-NOV-1995) C. Mabilat, UMR 103 CNRS-bioMerieux, Sondes froides, ENS Lyon. 46, allee dItalie, F- 69007 Lyon, FRANCE STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X92951 BASE COUNT 738 a 571 c 821 g 529 t 2100 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------nn nnnnnnnnn- --nnnnnnnn nnnnnnnnnn 121 n|nnnnnn|n nnnnnn|nn| nn-nnnnnnn nn|nnnn(nn nn-nn-)n|- nnn-nnnnnn 181 nnnnnn|-nn nnn(n-nn-n nnn-)nnnnn nn-nnn-nnn nnnnn|nnnn nnnnnn(nnn 241 n)nnn|nnnn nnnn(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --nnaguc)- GGAUAGU-AU CC-UUACGU( 481 GA-AUACA-- UA)GCG-UGA -G-G--AAG- GCAGAC|CC- AGGGAACU|G A(AACA)UCU 541 AAGUA-CCUG GAGGAAGAGA AAGA(-AAAA --)UCGAU|U UC-CUGAGUA GC(GGCGA)G 601 CGA-AAC-GG AA-AGA-GCC CAAAccaaga -ag------- -----(cuug -)-------- 661 ----cuucuu gggguuguag gacacucuau a--------- ---------- ---------- 721 ----cggagu ua--caaaag aaaguuau-a aaugaagcgg u-c(u-ggaa a)g-gcccgc 781 |c(aaa)gaC GG(UAACAGC )CCGGU-Agu u-gaaaungc uuucccucca ---------- 841 ---------- ----gagugg auccu---GA GUACGGCGGA A(CACGUG-A AA)UUCCGUC 901 GGAAUCC-GG G-AG(GACCA U)CU-CCC-A AGGCUAA--- -AUACUCCCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-CA GUUCCUGAAA CCGU-GUGCC UACAA-G-UA GUUAGAGCCC --G------- 1081 --------(- ---uuaa--) ---------- -----U-GGG UGAUAGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUU- UGUUGC-AAG GUUAAGCg-( -gaaaa)-aG 1201 C-GGAGCCGU AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC GC-------- ---------- 1261 ---------- -----au-aa G-UAACAGGU CGUA-GACCC GAAAC-CAG- GUGA-UCUAC 1321 CCAUGUC|CA GGAUGAAGGU AAGG(UAAU) AC-UUACUGG AGGUCCGAAC C-CACGCAC( 1381 -GUUGAAAA) GUGCG|GGG- AUGAG-GUGU GGGUAGCGGA (-GAAAU)UC CAAUCGAACU 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCG AGGua--aa| 1501 -gag|UCaUG G|AGGUAG|A GC-ACUGU-U UGGACUA-GG |-GGCCC(uu cuc)GGGUUA 1561 CCGAAUUCAG -AUAAACUCC GAA-UG-|cc a-u-gua--- cuua----u| acu-cgggAG 1621 UCAGAC--UG C-GAGU(GAU AAG)AUCCGU -AGUC-GAAA GGG(-AAACA G-)CCCAGAC 1681 CACCAGUUAA G-GU|CCCC- AAAUA-UAUG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 GGUUGCUUA- GACAACCAGG AUGUUGGC(U UAGAAGCA)G CCAC-CAU|U (GAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CGA GU-GAC-CC- -CGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACAUA-U|U| ACCGAAACU| GUGG|augaa ccuc---(uu ua-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- gagguucgu- GG-UAGGAGA G|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCGG-U 2341 GAAGUCA-G- A-CC(-GGAA -)GGA--CUG GUGG|AGCGC U-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGAA-A GAAGGG(UGA GAAU)CCCUU C|CACC-GAA UAUCUAAGGU 2461 UUCCUG-AGG AAGG-(CUCG U)CC|G-CUC AGGGUUAGU| CGG|G-ACCU AAGCUGAGGC 2521 C(GAUA)-G- GCGU-AGGCG AUGG-ACAAC AGG-(UA-GA GAUU)C-CUG U|AC|ca-g- 2581 ug-cua-auu g-uuu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ----aaccga u------ggg g--uga-cac agaaggaua- ggga-au|-c g-cac(gaa- 2761 -uggaa-au- --)gu-gcgu -|ccaa---- ---------- ---gcag-ug agug------ 2821 --ugaga-ag uagg(ca-aa -u-)cc|g-- cuucucgcga ---------a gcau-gagcu 2881 gug-augg|g ga-|------ -------agg a(aauuaag) -uacg----- ------gaag 2941 --uuccu-ga uuuc-acg-| cugucaagaa a-agccuc-u a-ggaa---- ------ga-g 3001 -uagua--cu g|c|CCGUAC CGCAAACC(G ACACA)GG|U AG-AUGAGG- A-(GAGAA)U 3061 CCUAAGGUGA ||GCGAGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCUCU---- ---------- ---auuaggg 3181 u(-gcaa-)g cccgag---- ---------- ---AGAG-C| C(GCA)GUGA AUAGGCC-CA 3241 GG|CGACU-- ---GU(UUAG CAAAA)ACAC AGGUCUCUG| CAAAACC(GU AA------)G 3301 GUGACGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGUGCUUA 3361 GC-------- (U-UCG)--- --------GC GA-AGGUACG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGCAAC GA-UCUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUU |AUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCGUGG|A GCU-UUACUG C|AACCUGAU AUG|GAAUGU UUGUACCGCU UGUACAGGAU 3661 AGGUAGGAGC CGAAGAGA-- CGUGUGC(GC UA)GCAUACG AGGAGGCAAU -G-GUGGGAU 3721 ACUACC|CUG G-CUGUAUGA CCA-UUCUAA -CCCGCC--- -ACGC(--UU -AGC)-GCGU 3781 GGGGA-GACA GUGUCAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AGAG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(A UGGAAA)UCA UUCGCA-GA| 3901 GU(G|UAAAG )GCACAAGGG AGCUUGACUG CGAGAC(UGA CAA)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGCAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-CAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACA CACCGCUGGU GUACCAGU|U GUUCC(GC-C A-)GGAGCA- UCGCUGGGUA 4381 GCU-AUGUGU GGCAGGGAUA AACGCU(GAA GGCAUCUA)A GCACGAAnnn nnnnnn|nnn 4441 nnnnnnnnnn n|nn|nnnnn n(-nnnn-)n nnnnn--nn- nnnn|-nn|n nnnn-(nnnn 4501 nn-n)nnnnn -nnnnnnn|n nnnn|nnnnn -nnnnnnnn- -(nnnn-)-- nnnnn|nn-n 4561 nnnn|n|nnn nnnnnnnnn- nnnnnnnnn| nnnnnn-nnn nn------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS L.innocua 4759 bp RNA RNA 31-MAR-1996 DEFINITION Listeria innocua.; 23S ribosomal RNA; 23S rRNA gene. ACCESSION X92949 KEYWORDS 23S ribosomal RNA; 23S rRNA gene. SOURCE Listeria innocua. ORGANISM Listeria innocua. REFERENCE 1 (bases 1 to 2666) AUTHORS Mabilat,C. Sallen,B., Rajoharison,A., Desvarenne,S., Quinn,F. and TITLE of Listeria Species Comparative Analysis of 16S and 23S Ribosomal RNA Sequences JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2666) AUTHORS Mabilat,C. TITLE Direct Submission JOURNAL Submitted (09-NOV-1995) C. Mabilat, UMR 103 CNRS-bioMerieux, Sondes froides, ENS Lyon. 46, allee dItalie, F- 69007 Lyon, FRANCE STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X92949 BASE COUNT 739 a 573 c 823 g 531 t 2093 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------nn nnnnnnnnn- --nnnnnnnn nnnnnnnnnn 121 n|nnnnnn|n nnnnnn|nn| nn-nnnnnnn nn|nnnn(nn nn-nn-)n|- nnn-nnnnnn 181 nnnnnn|-nn nnn(n-nn-n nnn-)nnnnn nn-nnn-nnn nnnnn|nnnn nnnnnn(nnn 241 n)nnn|nnnA UCU-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --uuaguc)- GGAUAGU-AU CC-UUACGU( 481 GA-AUACA-- UA)GCG-UGA -G-G--AAG- GCAGAC|CC- AGGGAACU|G A(AACA)UCU 541 AAGUA-CCUG GAGGAAGAGA AAGA(-AAAA --)UCGAU|U UC-CUGAGUA GC(GGCGA)G 601 CGA-AAC-GG AA-AGA-GCC CAAAccaaga -ag------- -----(cuug -)-------- 661 ----cuucuu gggguuguag gacacucuau a--------- ---------- ---------- 721 ----cggagu ua--caaaag aaaguuau-a aaugaagcgg u-c(u-ggaa a)g-gcccgc 781 |c(aaa)gaC GG(UAACAGC )CCGGU-Agu u-gaaauggc uuucccucca ---------- 841 ---------- ----gagugg auccu---GA GUACGGCGGA A(CACGUG-A AA)UUCCGUC 901 GGAAUCC-GG G-AG(GACCA U)CU-CCC-A AGGCUAA--- -AUACUCCCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-CA GUUCCUGAAA CCGU-GUGCC UACAA-G-UA GUUAGAGCCC --G------- 1081 --------(- ---uuaa--) ---------- -----U-GGG UGAUAGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUU- UGUUGC-AAG GUUAAGCg-( -gaaaa)-aG 1201 C-GGAGCCGU AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC GC-------- ---------- 1261 ---------- -----au-aa G-UAACAGGU CGUA-GACCC GAAAC-CAG- GUGA-UCUAC 1321 CCAUGUC|CA GGAUGAAGGU AAGG(UAAU) AC-UUACUGG AGGUCCGAAC C-CACGCAC( 1381 -GUUGAAAA) GUGCG|GGG- AUGAG-GUGU GGGUAGCGGA (-GAAAU)UC CAAUCGAACU 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCG AGGua--aa| 1501 -gag|UCaUG G|AGGUAG|A GC-ACUGU-U UGGACUA-GG |-GGCCC(uu cuc)GGGUUA 1561 CCGAAUUCAG -AUAAACUCC GAA-UG-|cc a-u-gua--- cuua----u| acu-cgggAG 1621 UCAGAC--UG C-GAGU(GAU AAG)AUCCGU -AGUC-GAAA GGG(-AAACA G-)CCCAGAC 1681 CACCAGUUAA G-GU|CCCC- AAAUA-UAUG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 GGUUGCUUA- GACAACCAGG AUGUUGGC(U UAGAAGCA)G CCAC-CAU|U (GAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CGA GU-GAC-CC- -CGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACAUA-U|U| ACCGAAACU| GUGG|augaa ccuc---(uu cg-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- gagguucgu- GG-UAGGAGA G|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCGG-U 2341 GAAGUCA-G- A-CC(-GGAA -)GGA--CUG GUGG|AGCGC U-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGAA-A GAAGGG(UGA GAAU)CCCUU C|CACC-GAA UAUCUAAGGU 2461 UUCCUG-AGG AAGG-(CUCG U)CC|G-CUC AGGGUUAGU| CGG|G-ACCU AAGCCGAGGC 2521 C(GAUA)-G- GCGU-AGGCG AUGG-ACAAC AGG-(UA-GA GAUU)C-CUG U|AC|ca-g- 2581 ug-cua-auu g-uuu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ----aaccga u------ggg g--uga-cac agaaggaua- ggga-au|-c g-cac(gaa- 2761 -uggaa-au- --)gu-gcgu -|ccaa---- ---------- ---gcag-ug agug------ 2821 --ugaga-ag uagg(ca-aa -u-)cc|g-- cuucuugcga ---------a gcau-gagcu 2881 gug-augg|g ga-|------ -------agg a(aauuaag) -uacg----- ------gaag 2941 --uuccu-ga uuuc-acg-| cugucaagaa a-agccuc-u a-ggaa---- ------ga-g 3001 -uagua--cu g|c|CCGUAC CGCAAACC(G ACACA)GG|U AG-AUGAGG- A-(GAGAA)U 3061 CCUAAGGUGA ||GCGAGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCUCU---- ---------- ---auuaggg 3181 u(-gcaa-)g cccgag---- ---------- ---AGAG-C| C(GCA)GUGA AUAGGCC-CA 3241 GG|CGACU-- ---GU(UUAG CAAAA)ACAC AGGUCUCUG| CAAAACC(GU AA------)G 3301 GUGACGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGUGCUUA 3361 GC-------- (U-UCG)--- --------GC GA-AGGUACG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGCAAC GA-UCUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUU |AUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCGUGG|A GCU-UUACUG C|AACCUGAU AUG|GAAUGU UUGUACCGCU UGUACAGGAU 3661 AGGUAGGAGC CGAAGAGA-- CGUGUGC(GC UA)GCAUACG AGGAGGCAAU -G-GUGGGAU 3721 ACUACC|CUG G-CUGUAUGA CCA-UUCUAA -CCCGCC--- -ACGC(--UA -AGC)-GCGU 3781 GGGGA-GACA GUGUCAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AGAG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(A UGGAAA)UCA UUCGCA-GA| 3901 GU(G|UAAAG )GCACAAGGG AGCUUGACUG CGAGAC(UGA CAA)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGCAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-CAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACA CACCGCUGGU GUACCAGU|U GUUCC(GC-C A-)GGAGCA- UCGCUGGGUA 4381 GCU-AUGUGU GGCAGGGAUA AACGCU(GAA GGCAUCUA)A GCACGAAnnn nnnnnn|nnn 4441 nnnnnnnnnn n|nn|nnnnn n(-nnnn-)n nnnnn--nn- nnnn|-nn|n nnnn-(nnnn 4501 nn-n)nnnnn -nnnnnnn|n nnnn|nnnnn -nnnnnnnn- -(nnnn-)-- nnnnn|nn-n 4561 nnnn|n|nnn nnnnnnnnn- nnnnnnnnn| nnnnnn-nnn nn------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS L.welshime 4759 bp RNA RNA 31-MAR-1996 DEFINITION Listeria welshimeri.; 23S ribosomal RNA; 23S rRNA gene. ACCESSION X92954 KEYWORDS 23S ribosomal RNA; 23S rRNA gene. SOURCE Listeria welshimeri. ORGANISM Listeria welshimeri. REFERENCE 1 (bases 1 to 2666) AUTHORS Sallen,B., Rajoharison,A., Desvarenne,S., Quinn,F. and Mabilat,C. TITLE Comparative Analysis of 16S and 23S Ribosomal RNA Sequences of Listeria Species JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2666) AUTHORS Mabilat,C. TITLE Direct Submission JOURNAL Submitted (09-NOV-1995) C. Mabilat, UMR 103 CNRS-bioMerieux, Sondes froides, ENS Lyon. 46, allee dItalie, F- 69007 Lyon, FRANCE STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X92954 BASE COUNT 738 a 576 c 819 g 530 t 2096 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------nn nnnnnnnnn- --nnnnnnnn nnnnnnnnnn 121 n|nnnnnn|n nnnnnn|nn| nn-nnnnnnn nn|nnnn(nn nn-nn-)n|- nnn-nnnnnn 181 nnnnnn|-nn nnn(n-nn-n nnn-)nnnnn nn-nnn-nnn nnnnn|nnnn nnnnnn(nnn 241 n)nCC|ACUA UCU-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --uuaguc)- GGAUAGU-AU CC-UUACGU( 481 GA-AUACA-- UA)GCG-UGA -G-G--AAG- GCAGAC|CC- AGGGAACU|G A(AACA)UCU 541 AAGUA-CCUG GAGGAAGAGA AAGA(-AAAA --)UCGAU|U UC-CUGAGUA GC(GGCGA)G 601 CGA-AAC-GG AA-AGA-GCC CAAAccaaga -ag------- -----(cuug -)-------- 661 ----cuucuu gggguuguag gacacucuau a--------- ---------- ---------- 721 ----cggagu ua--caaaag aaaguuau-a aaugaagcgg u-c(u-ggaa a)g-gcccgc 781 |c(aaa)gaC GG(UAACAGC )CCGGU-Agu u-gaaauagc uuucccucca ---------- 841 ---------- ----gagugg auccu---GA GUACGGCGGA A(CACGUG-A AA)UUCCGUC 901 GGAAUCC-GG G-AG(GACCA U)CU-CCC-A AGGCUAA--- -AUACUCCCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-CA GUUCCUGAAA CCGU-GUGCC UACAA-G-UA GUUAGAGCCC --G------- 1081 --------(- ---uuaa--) ---------- -----U-GGG UGAUAGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUU- UGUUGC-AAG GUUAAGCg-( -gaaaa)-aG 1201 C-GGAGCCGU AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC GC-------- ---------- 1261 ---------- -----au-aa G-UAACAGGU CGUA-GACCC GAAAC-CAG- GUGA-UCUAC 1321 CCAUGUC|CA GGAUGAAGGU AAGG(UAAU) AC-UUACUGG AGGUCCGAAC C-CACGCAC( 1381 -GUUGAAAA) GUGCG|GGG- AUGAG-GUGU GGGUAGCGGA (-GAAAU)UC CAAUCGAACU 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCG AGGua--aa| 1501 -gag|UCaUG G|AGGUAG|A GC-ACUGU-U UGGACUA-GG |-GGCCC(uu cuc)GGGUUA 1561 CCGAAUUCAG -AUAAACUCC GAA-UG-|cc a-u-gua--- cuua----u| acu-cgggAG 1621 UCAGAC--UG C-GAGU(GAU AAG)AUCCGU -AGUC-GAAA GGG(-AAACA G-)CCCAGAC 1681 CACCAGUUAA G-GU|CCCC- AAAUA-UAUG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 GGUUGCUUA- GACAACCAGG AUGUUGGC(U UAGAAGCA)G CCAC-CAU|U (GAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CGA GU-GAC-CC- -CGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACAUA-U|U| ACCGAAACU| GUGG|augaa ccuc---(uu cg-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- gagguucgu- GG-UAGGAGA G|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCGG-U 2341 GAAGUCA-G- A-CC(-GGAA -)GGA--CUG GUGG|AGCGC U-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGAA-A GAAGGG(UGA GAAU)CCCUU C|CACC-GAA UAUCUAAGGU 2461 UUCCUG-AGG AAGG-(CUCG U)CC|G-CUC AGGGUUAGU| CGG|G-ACCU AAGCCGAGGC 2521 C(GAUA)-G- GCGU-AGGCG AUGG-ACAAC AGG-(UA-GA GAUU)C-CUG U|AC|ca-g- 2581 ug-cua-auu g-uuu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ----aaccga u------ggg g--uga-cac agaaggaua- ggga-au|-c g-cac(gaa- 2761 -uggaa-au- --)gu-gcgu -|ccaa---- ---------- ---gcag-ug agug------ 2821 --ugaga-ag uagg(ca-aa -u-)cc|g-- cuucucgcga ---------a gcau-gagcu 2881 gug-augg|g ga-|------ -------agg a(aauaaag) -uacg----- ------gaag 2941 --uuccu-ga uuuc-acg-| cugucaagaa a-agccuc-u a-ggaa---- ------ga-g 3001 -uagua--cu g|c|CCGUAC CGCAAACC(G ACACA)GG|U AG-AUGAGG- A-(GAGAA)U 3061 CCUAAGGUGA ||GCGAGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCUCU---- ---------- ---auuaggg 3181 u(-gcaa-)g cccgag---- ---------- ---AGAG-C| C(GCA)GUGA AUAGGCC-CA 3241 GG|CGACU-- ---GU(UUAG CAAAA)ACAC AGGUCUCUG| CAAAACC(GU AA------)G 3301 GUGACGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGUGCUUA 3361 GC-------- (U-UCG)--- --------GC GA-AGGUACG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGCAAC GA-UCUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUU |AUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCGUGG|A GCU-UUACUG C|AACCUGAU AUG|GAAUGU UUGUACCGCU UGUACAGGAU 3661 AGGUAGGAGC CGAAGAGA-- CGUGUGC(GC UA)GCAUACG AGGAGGCAAU -G-GUGGGAU 3721 ACUACC|CUG G-CUGUAUGA CCA-UUCUAA -CCCGCC--- -ACGC(--UU -AGC)-GCGU 3781 GGGGA-GACA GUGUCAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AGAG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(A UGGAAA)UCA UUCGCA-GA| 3901 GU(G|UAAAG )GCACAAGGG AGCUUGACUG CGAGAC(UGA CAA)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|NCCAUN GCUCAAC|GG 4021 AUACAAGCUA CCC|CGGG|G AUAACAG|NC UUA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGCAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-CAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACA CACCGCUGGU GUACCAGU|U GUUCC(GC-C A-)GGAGCA- UCGCUGGGUA 4381 GCU-AUGUG- GGCAGGGAUA AACGCU(GAA GGCAUCUA)A GCAnnnnnnn nnnnnn|nnn 4441 nnnnnnnnnn n|nn|nnnnn n(-nnnn-)n nnnnn--nn- nnnn|-nn|n nnnn-(nnnn 4501 nn-n)nnnnn -nnnnnnn|n nnnn|nnnnn -nnnnnnnn- -(nnnn-)-- nnnnn|nn-n 4561 nnnn|n|nnn nnnnnnnnn- nnnnnnnnn| nnnnnn-nnn nn------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS L.seeliger 4759 bp RNA RNA 31-MAR-1996 DEFINITION Listeria seeligeri.; 23S ribosomal RNA; 23S rRNA gene. ACCESSION X92953 KEYWORDS 23S ribosomal RNA; 23S rRNA gene. SOURCE Listeria seeligeri. ORGANISM Listeria seeligeri. REFERENCE 1 (bases 1 to 2684) AUTHORS Sallen,B., Rajoharison,A., Desvarenne,S., Quinn,F. and Mabilat,C. TITLE Comparative Analysis of 16S and 23S Ribosomal RNA Sequences of Listeria Species JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2684) AUTHORS Mabilat,C. TITLE Direct Submission JOURNAL Submitted (09-NOV-1995) C. Mabilat, UMR 103 CNRS-bioMerieux, Sondes froides, ENS Lyon. 46, allee dItalie, F- 69007 Lyon, FRANCE STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X92953 BASE COUNT 746 a 576 c 824 g 538 t 2075 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------nn nnnnnnnnn- --nnnnnnnn nnnnnnnnnn 121 n|nnnnnn|n nnnnnn|nn| nn-nnnnnnn nn|nnnn(nn nn-nn-)n|- nnn-nnnnnn 181 nnnnnn|-nn nnn(n-nn-n nnn-)nnnnn nn-nnn-nnn nnnUU|CCCG AAUGGG(GAA 241 A)CCC|ACUA UCU-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --uuaguc)- GGAUAGU-AU CC-UUACGU( 481 GA-AUACA-- UA)GCG-UGA -G-G--AAG- GCAGAC|CC- AGGGAACU|G A(AACA)UCU 541 AAGUA-CCUG GAGGAAGAGA AAGA(-AAAA --)UCGAU|U UC-CUGAGUA GC(GGCGA)G 601 CGA-AAC-GG AA-AGA-GCC CAAAccaaga -ag------- -----(cuug -)-------- 661 ----cuucuu gggguuguag gacacucuau a--------- ---------- ---------- 721 ----cggagu ua--caaaag aaaguuau-a aaugaagcgg u-c(u-ggaa a)g-gcccgc 781 |c(aaa)gaC GG(UAACAGC )CCGGU-Agu u-gaaauagc uuucccucca ---------- 841 ---------- ----gagugg auccu---GA GUACGGCGGA A(CACGUG-A AA)UUCCGUC 901 GGAAUCC-GG G-AG(GACCA U)CU-CCC-A AGGCUAA--- -AUACUCCCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-CA GUUCCUGAAA CCGU-GUGCC UACAA-G-UA GUUAGAGCCC --G------- 1081 --------(- ---uuaa--) ---------- -----U-GGG UGAUAGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUU- UGUUGC-AAG GUUAAGUg-( -gaaaa)-aG 1201 C-GGAGCCGU AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC GA-------- ---------- 1261 ---------- -----au-aa G-UAACAGGU CGUA-GACCC GAAAC-CAG- GUGA-UCUAC 1321 CCAUGUC|CA GGAUGAAGGU AAGG(UAAU) AC-UUACUGG AGGUCCGAAC C-CACGCAC( 1381 -GUUGAAAA) GUGCG|GGG- AUGAG-GUGU GGGUAGCGGA (-GAAAU)UC CAAUCGAACU 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCG AGGua--aa| 1501 -gag|UCaUG G|AGGUAG|A GC-ACUGU-U UGGACUA-GG |-GGCCC(uu cuc)GGGUUA 1561 CCGAAUUCAG -AUAAACUCC GAA-UG-|cc a-u-gua--- cuua----u| acu-cgggAG 1621 UCAGAC--UG C-GAGU(GAU AAG)AUCCGU -AGUC-GAAA GGG(-AAACA G-)CCCAGAC 1681 CACCAGUUAA G-GU|CCCC- AAAUA-UAUG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 GGUUGCUUA- GACAACCAGG AUGUUGGC(U UAGAAGCA)G CCAC-CAU|U (GAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CGA GU-GAC-CC- -CGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACAUA-U|U| ACCGAAACU| GUGG|augaa ccuc---(uu ua-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- gagguucgu- GG-UAGGAGA G|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCGG-U 2341 GAAGUCA-G- A-CC(-GGAA -)GGA--CUG GUGG|AGCGC U-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGAA-A GAAGGG(UGA GAAU)CCCUU C|CACC-GAA UAUCUAAGGU 2461 UUCCUG-AGG AAGG-(CUCG U)CC|G-CUC AGGGUUAGU| CGG|G-ACCU AAGCCGAGGC 2521 C(GAUA)-G- GCGU-AGGCG AUGG-ACAAC AGG-(UA-GA GAUU)C-CUG U|AC|ca-g- 2581 ug-cua-auu g-uuu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ----aaccga u------ggg g--uga-cac agaaggaua- ggga-au|-c g-cac(gaa- 2761 -uggaa-au- --)gu-gcgu -|ccaa---- ---------- ---gcag-ug agug------ 2821 --ugaga-ag uagg(ca-aa -u-)cc|g-- cuucucgcga ---------a gcau-gagcu 2881 gug-augg|g ga-|------ -------agg a(aauuaag) -uacg----- ------gaag 2941 --uuccu-ga uuuc-acg-| cugucaagaa a-agccuc-u a-ggaa---- ------ga-g 3001 -uagua--cu g|c|CCGUAC CGCAAACC(G ACACA)GG|U AG-AUGAGG- A-(GAGAA)U 3061 CCUAAGGUGA ||GCGAGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCUCU---- ---------- ---auuaggg 3181 u(-gcaa-)g cccgag---- ---------- ---AGAG-C| C(GCA)GUGA AUAGGCC-CA 3241 GG|CGACU-- ---GU(UUAG CAAAA)ACAC AGGUCUCUG| CAAAACC(GU AA------)G 3301 GUGACGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGUGCUUA 3361 GC-------- (U-UCG)--- --------GC GA-AGGUACG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGCAAC GA-UCUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUU |AUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCGUGG|A GCU-UUACUG C|AACCUGAU AUG|GAAUGU UUGUACCGCU UGUACAGGAU 3661 AGGUAGGAGC CGAAGAGA-- CGUGUGC(GC UA)GCAUACG AGGAGGCAAU -G-GUGGGAU 3721 ACUACC|CUG G-CUGUAUGA CCA-UUCUAA -CCCACC--- -ACGC(--UU -AGC)-GCGU 3781 GGGGA-GACA GUGUCAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AGAG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(A UGGAAA)UCA UUCGCA-GA| 3901 GU(G|UAAAG )GCACAAGGG AGCUUGACUG CGAGAC(UGA CAA)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGCAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-CAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACA CACCGCUGGU GUACCAGU|U GUUCC(GC-C A-)GGAGCA- UCGCUGGGUA 4381 GCU-AUGUGU GGCAGGGAUA AACGCU(GAA GGUAUCUA)A GCAnnnnnnn nnnnnn|nnn 4441 nnnnnnnnnn n|nn|nnnnn n(-nnnn-)n nnnnn--nn- nnnn|-nn|n nnnn-(nnnn 4501 nn-n)nnnnn -nnnnnnn|n nnnn|nnnnn -nnnnnnnn- -(nnnn-)-- nnnnn|nn-n 4561 nnnn|n|nnn nnnnnnnnn- nnnnnnnnn| nnnnnn-nnn nn------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS L.ivanov.1 4759 bp RNA RNA 31-MAR-1996 DEFINITION Listeria ivanovii.; 23S ribosomal RNA; 23S rRNA gene. ACCESSION X92950 KEYWORDS 23S ribosomal RNA; 23S rRNA gene. SOURCE Listeria ivanovii. ORGANISM Listeria ivanovii. REFERENCE 1 (bases 1 to 2648) AUTHORS Sallen,B., Rajoharison,A., Desvarenne,S., Quinn,F. and Mabilat ,C. TITLE Comparative Analysis of 16S and 23S Ribosomal RNA Sequences of Listeria Species JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2648) AUTHORS Mabilat,C. TITLE Direct Submission JOURNAL Submitted (09-NOV-1995) C. Mabilat, UMR 103 CNRS-bioMerieux, Sondes froides, ENS Lyon. 46, allee dItalie, F- 69007 Lyon, FRANCE STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X92950 BASE COUNT 738 a 567 c 813 g 529 t 2112 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------nn nnnnnnnnn- --nnnnnnnn nnnnnnnnnn 121 n|nnnnnn|n nnnnnn|nn| nn-nnnnnnn nn|nnnn(nn nn-nn-)n|- nnn-nnnnnn 181 nnnnnn|-nn nnn(n-nn-n nnn-)nnnnn nn-nnn-nnn nnnnn|nnnn nnnnnn(nnn 241 n)nnn|ACUA UCU-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --uuaguc)- GGAUAGU-AU CC-UUACGU( 481 GA-AUACA-- UA)GCG-UGA -G-G--AAG- GCAGAC|CC- AGGGAACU|G A(AACA)UCU 541 AAGUA-CCUG GAGGAAGAGA AAGA(-AAAA --)GCGAU|U UC-CUGAGUA GC(GGCGA)G 601 CGA-AAC-GG AA-AAA-GCC CAAAccaaga -ag------- -----(cuug -)-------- 661 ----cuucuu gggguuguag gacacucuau a--------- ---------- ---------- 721 ----cggagu ua--caaaag aaaguuau-a aaugaagcgg u-c(u-ggaa a)g-gcccgc 781 |c(aaa)gaC GG(UAACAGC )CCGGU-Agu u-gaaauagc uuucccucca ---------- 841 ---------- ----gagugg auccu---GA GUACGGCGGA A(CACGUG-A AA)UUCCGUC 901 GGAAUCC-GG G-AG(GACCA U)CU-CCC-A AGGCUAA--- -AUACUCCCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-CA GUUCCUGAAA CCGU-GUGCC UACAA-G-UA GUUAGAGCCC --G------- 1081 --------(- ---uuaa--) ---------- -----U-GGG UGAUAGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUU- UGUUGC-AAG GUUAAGCg-( -gaaaa)-aG 1201 C-GGAGCCGU AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC GA-------- ---------- 1261 ---------- -----au-aa G-UAACAGGU CGUA-GACCC GAAAC-CAG- GUGA-UCUAC 1321 CCAUGUC|CA GGAUGAAGGU AAGG(UAAU) AC-UUACUGG AGGUCCGAAC C-CACGCAC( 1381 -GUUGAAAA) GUGCG|GGG- AUGAG-GUGU GGGUAGCGGA (-GAAAU)UC CAAUCGAACU 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCG AGGua--aa| 1501 -gag|UCaUG G|AGGUAG|A GC-ACUGU-U UGGACUA-GG |-GGCCC(uu cuc)GGGUUA 1561 CCGAAUUCAG -AUAAACUCC GAA-UG-|cc a-u-gua--- cuua----u| acu-cgggAG 1621 UCAGAC--UG C-GAGU(GAU AAG)AUCCGU -AGUC-GAAA GGG(-AAACA G-)CCCAGAC 1681 CACCAGUUAA G-GU|CCCC- AAAUA-UAUG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 GGUUGCUUA- GACAACCAGG AUGUUGGC(U UAGAAGCA)G CCAC-CAU|U (GAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CGA GU-GAC-CC- -CGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACAUA-U|U| ACCGAAACU| GUGG|augaa ccuc---(uu aua------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- gagguucgu- GG-UAGGAGA G|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCGG-U 2341 GAAGUCA-G- A-CC(-GGAA -)GGA--CUG GUGG|AGCGC U-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGAA-A GAAGGG(UGA GAAU)CCCUU C|CACC-GAA UAUCUAAGGU 2461 UUCCUG-AGG AAGG-(CUCG U)CC|G-CUC AGGGUUAGU| CGG|G-ACCU AAGCCGAGGC 2521 C(GAUA)-G- GCGU-AGGCG AUGG-ACAAC AGG-(UA-GA GAUU)C-CUG U|AC|ca-g- 2581 ug-cua-auu g-uuu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ----aaccga u------ggg g--uga-cac agaaggaua- ggga-au|-c g-cac(gaa- 2761 -uggaa-au- --)gu-gcgu -|ccaa---- ---------- ---gcag-ug agug------ 2821 --ugaga-ag uagg(ca-aa -u-)cc|g-- cuucucgcga ---------a gcau-gagcu 2881 gug-augg|g ga-|------ -------agg a(aaugaag) -uacg----- ------gaag 2941 --uuccu-ga uuuc-acg-| cugucaagaa a-agccuc-u a-ggaa---- ------ga-g 3001 -uagua--cu g|c|CCGUAC CGCAAACC(G ACACA)GG|U AG-AUGAGG- A-(GAGAA)U 3061 CCUAAGGUGA ||GCGAGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(UUUCG)G GAGAAGGGGU |GCUCU---- ---------- ---auuaggg 3181 u(-gcaa-)g cccgag---- ---------- ---AGAG-C| C(GCA)GUGA AUAGGCC-CA 3241 GG|CGACU-- ---GU(UUAG CAAAA)ACAC AGGUCUCUG| CAAAACC(GU AA------)G 3301 GUGACGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGUGCUUA 3361 GC-------- (U-UCG)--- --------GC GA-AGGUACG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGCAAC GA-UCUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUU |AUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCGUGG|A GCU-UUACUG C|AACCUGAU AUG|GAAUGU UUGUACCGCU UGUACAGGAU 3661 AGGUAGGAGC CGAAGAGA-- CGUGUGC(GC UA)GCAUACG AGGAGGCAAU -G-GUGGGAU 3721 ACUACC|CUG G-CUGUAUGA CCA-UUCUAA -CCCGCC--- -ACGC(--UU -AGC)-GCGU 3781 GGGGA-GACA GUGUCAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AGAG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(A UGGAAA)UCA UUCGCA-GA| 3901 GU(G|UAAAG )GCACAAGGG AGCUUGACUG CGAGAC(UGA CAA)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|CGGG|G AUAACAG|AC UUA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGCAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-CAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACA CACCGCUGGU GUACCAGU|U GUUCC(GC-C A-)GGANCA- UCGCUGGGUA 4381 GCU-AUGUGU GACAGGGAUA AAnnnn(nnn nnnnnnnn)n nnnnnnnnnn nnnnnn|nnn 4441 nnnnnnnnnn n|nn|nnnnn n(-nnnn-)n nnnnn--nn- nnnn|-nn|n nnnn-(nnnn 4501 nn-n)nnnnn -nnnnnnn|n nnnn|nnnnn -nnnnnnnn- -(nnnn-)-- nnnnn|nn-n 4561 nnnn|n|nnn nnnnnnnnn- nnnnnnnnn| nnnnnn-nnn nn------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS L.ivanov.2 4759 bp RNA RNA 09-FEB-1998 DEFINITION Listeria ivanovii.; 23S ribosomal RNA; 23S rRNA; 5S ribosomal RNA; 5S rRNA; inlC gene; inlD gene; internalin C; internalin D; leucine-rich repeat; ORFZ; protein binding site; transcriptional activator; transcriptional repressor; transfer RNA-Asn; transfer RNA-Thr; tRNA-Asn; tRNA-Thr. ACCESSION Y07639 KEYWORDS 23S ribosomal RNA; 23S rRNA; 5S ribosomal RNA; 5S rRNA; inlC gene; inlD gene; internalin C; internalin D; leucine-rich repeat; ORFZ; protein binding site; transcriptional activator; transcriptional repressor; transfer RNA-Asn; transfer RNA-Thr; tRNA-Asn; tRNA-Thr. SOURCE Listeria ivanovii. ORGANISM Listeria ivanovii. REFERENCE 1 (bases 1 to 5380) AUTHORS Engelbrecht,F., Dickneite,C., Lampidis,R., Goetz,M., DasGupta,U. and Goebel,W. TITLE ivanovii Sequence comparison of the chromosomal regions encompassing the internalin C genes (inlC) of Listeria monocytogenes and L. JOURNAL Mol. Gen. Genet. 257, 1186-1197 (1998) STANDARD No information REFERENCE 2 (bases 1 to 5380) AUTHORS Engelbrecht,F. TITLE Direct Submission JOURNAL Submitted (22-AUG-1996) F. Engelbrecht, Universitaet Wuerzburg, Institut Fuer Mikrobiologie, Theodor-Boveri-Institut Fuer Biowissen-schaften, Lehrstuhl Fuer Mikrobiologie, Am Hubland, 97074 Wuerzburg, FRG STANDARD No information REFERENCE 3 (bases 1 to 5380) AUTHORS Engelbrecht,F. TITLE Direct Submission JOURNAL Submitted (02-APR-1997) F. Engelbrecht, Universitaet Wuerzburg, Institut Fuer Mikrobiologie, Theodor-Boveri-Institut Fuer Biowissen-schaften, Lehrstuhl Fuer Mikrobiologie, Am Hubland, 97074 Wuerzburg, FRG STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: Y07639 Related sequence X95822. BASE COUNT 186 a 178 c 239 g 153 t 4003 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~-~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~(~~~~~~~ )~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~-~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~-~~~~~ 1081 ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| -~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ 1201 ~-~~~~~~~~ ~~~(~~~~~) ~~~~~~~~(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 1381 -~~~~~~~~) ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (-~~~~~)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 ~~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~-~ ~~~~~~~~~~ |-~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~-~~~~ ~~~(~~~~~~ ~~)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|-----~~~ 2221 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~|~~~~~~~ ~-~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-(~~~~ ~)~~|~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~|~~|~~~~- 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~|~~ ~~~~~(~~~~ 2761 ~~~~~~~~~~ ~~)~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~(~~~~~ ~~~)~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~~~~~~~~- ~~(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~-~~ ~-~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |~~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~~~ ~~(~~~~~~~ ~)~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~|~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~C(GC UA)GCAUACG AGGAGGCAAU -G-GUGGGAU 3721 ACUACC|CUG G-CUGUAUGA CCA-UUCUAA -CCCGCC--- -ACGC(--UU -AGC)-GCGU 3781 GGGGA-GACA GUGUCAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AGAG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(A UGGAAA)UCA UUCGCA-GA| 3901 GU(G|UAAAG )GCACAAGGG AGCUUGACUG CGAGAC(UGA CAA)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| U-GGC(UGUU C)GC-CCAUU AAAGCGGCAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-CAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACA CACCGCUGGU GUACCAGU|U GUUCC(GC-C A-)GGAGCA- UCGCUGGGUA 4381 GCU-AUGUGU GGCAGGGAUA AACGCU(GAA AGCAUCUA)A GCGUGAAGCC CCCCUC|AAG 4441 AUGAGAUUUC C|CA|UUUC- -(-UUCG-)- -GAAA--GU- AAGA|-UC|C CUGA-(AAGA 4501 UG-A)UCAGG -UAGAUAG|G UUUG|GAGUG -GAAGUGUA- -(GCGA-)-- UACAU|GG-A 4561 GCGG|A|CAA AUACUAAUC- GAUCGA-GG| ACUUaa-cca a-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS L.grayi 4759 bp RNA RNA 31-MAR-1996 DEFINITION Listeria grayi.; 23S ribosomal RNA; 23S rRNA gene. ACCESSION X92948 KEYWORDS 23S ribosomal RNA; 23S rRNA gene. SOURCE Listeria grayi. ORGANISM Listeria grayi. REFERENCE 1 (bases 1 to 2631) AUTHORS Sallen,B., Rajoharison,A., Desvarenne,S., Quinn,F. and Mabilat,C. TITLE Comparative Analysis of 16S and 23S Ribosomal RNA Sequences of Listeria Species JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2631) AUTHORS Mabilat,C. TITLE Direct Submission JOURNAL Submitted (09-NOV-1995) C. Mabilat, UMR 103 CNRS-bioMerieux, Sondes froides, ENS Lyon. 46, allee dItalie, F- 69007 Lyon, FRANCE STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X92948 BASE COUNT 717 a 572 c 820 g 521 t 2129 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------nn nnnnnnnnn- --nnnnnnnn nnnnnnnnnn 121 n|nnnnnn|n nnnnnn|nn| nn-nnnnnnn nn|nnnn(nn nn-nn-)n|- nnn-nnnnnn 181 nnnnnn|-nn nnn(n-nn-n nnn-)nnnnn nn-nnn-nnn nnnnn|nnnn nnnnnn(nnn 241 n)nnn|nnnn nnn-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --nnnnuc)- GGAUAGU-AU CC-UGACGU( 481 GA-UUACA-- UA)GCG-UUA -G-G--AAG- GCAGAC|CC- AGGGAACU|G A(AACA)UCU 541 AAGUA-CCUG GAGGAAGAGA AAGA(-AAAA --)UCGAU|U UC-CUGAGUA GC(GGCGA)G 601 CGA-AAC-GG AA-AGA-GCC CAAAccaaga -ag------- -----(cuug -)-------- 661 ----cuucuu gggguuguag gacacucuau a--------- ---------- ---------- 721 ----cggagu ua--caaaag aaggaugu-a gaugaagcgg u-c(u-ggaa a)g-gcccgc 781 |c(aga)gaC GG(UAAAAGC )CCGGU-Agu c-gaaacguc uuucccucca ---------- 841 ---------- ----gagugg auccu---GA GUACGGCGGA A(CACGUG-A AA)UUCCGUC 901 GGAAUCC-GG G-AG(GACCA U)CU-CCC-A AGGCUAA--- -AUACUCCCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-UA GUACCUGAAA CCGU-GUGCC UACAA-G-UA GUUAGAGCCC --G------- 1081 --------(- ---uuaa--) ---------- -----U-GGG UGAUAGCGUG CCU(UUG-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUU- UGUUGC-AAG GUUAAGCg-( -gaaaa)-aG 1201 C-GGAGCCGU AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC GU-------- ---------- 1261 ---------- -----augaa G-UAACAGGU CGUA-GACCC GAAAC-CAG- GUGA-UCUAC 1321 CCAUGUC|CA GGGUGAAGGU AAGG(UAAU) AC-UUACUGG AGGCCCGAAC C-CACGCAC( 1381 -GUUGAAAA) GUGCG|GGG- AUGAG-GUGU GGGUAGCGGA (-GAAAU)UC CAAUCGAACU 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCG AGGua--aa| 1501 -gag|UCgUG G|AGGUAG|A GC-ACUGU-U UGGACUA-GG |-GGCCC(uu cuc)GGGUUA 1561 CCGAAUUCAG -AUAAACUCC GAA-UG-|cc a-u-gua--- cuua----u| acu-cgggAG 1621 UCAGAC--UG C-GAGU(GAU AAG)AUCCGU -AGUC-GAAA GGG(-AAACA G-)CCCAGAC 1681 CACCAGUUAA G-GU|CCCA- AAAUA-UACG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 GGUUGCUUA- GACAACCAGG AUGUUGGC(U UAGAAGCA)G CCAC-CAU|U (GAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CGA GU-GAC-CC- -CGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACGUA-U|U| ACCGAAACU| GUGG|augaa cauc---(uu cg-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- gauguucgu- GG-UAGGAGA G|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCGU-U 2341 GAAGUCA-G- A-CC(-GGAA -)GGA--CUG GUGG|AGCGC U-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGAA-A GAAGGG(UGA GAAU)CCCUU C|CACC-GAA UAUCUAAGGU 2461 UUCCUG-AGG AAGG-(CUCG U)CC|G-CUC AGGGUUAGU| CGG|G-ACCU AAGCCGAGGC 2521 C(GAUA)-G- GCGU-AGGCG AUGG-ACAAC AGG-(UU-GA UAUU)C-CUG U|AC|ca-g- 2581 ug-ccg-uuu g-uuu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ----gagcaa u------ggg g--uga-cac agaaggaua- agga-au|-c g-cac(gaa- 2761 -uggaa-ag- --)gu-gcgu -|ccaa---- ---------- ---gcag-ug agug------ 2821 --ugaga-ag uagg(ca-aa -u-)cc|g-- cuucucgcga ---------a gcau-gagcu 2881 gug-augg|g ga-|------ -------agg a(aauuaag) -uacg----- ------gaag 2941 --uuccu-ga uuuc-acg-| cugucaagaa a-agccuc-u a-guua---- ------ga-a 3001 -cugua--cu g|c|CCGUAC CGCAAACC(G ACACA)GG|U AG-AUGAGG- A-(GAGAA)U 3061 CCUAAGGUGA ||GCGAGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCUCU---- ---------- ---auuaggg 3181 u(-gaaa-)g cccgag---- ---------- ---AGAG-C| C(GCA)GUGA AUAGGCC-CA 3241 GG|CGACU-- ---GU(UUAG CAAAA)ACAC AGGUCUCUG| CAAAACC(GU AA------)G 3301 GUGACGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGCGCUUA 3361 GC-------- (G-CAA)--- --------GC GA-AGGUGCG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGCAAC GA-UCUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUU |AUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCGUGG|A GCU-UUACUG C|AACCUGAU AUG|GAAUGU UUGUACCGCU UGUACAGGAU 3661 AGGUAGGAGC CUAAGAGC-- UGCGCGC(GC CA)GCGUGCA AGGAGGCAAU -G-GUGGGAU 3721 ACUACC|CUG G-CUGUAUGA CCA-UUCUAA -CCCGCC--- -ACGC(--UU -AGC)-GCGU 3781 GGGGA-GACA GUGUCAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AGAG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(A UGGAAA)UCA UUCGCA-GA| 3901 GU(G|UAAAG )GCACAAGGG AGCUUGACUG CGAGAC(UGA CAA)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC CNUCACC|GG 4021 AUAAAAGCUA CCC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGCAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-CAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACG CACCGCUGGU GUACCAGU|U GUUCC(GC-C A-)GGAGCA- UCGCUGGGUA 4381 GCU-AUGUGC GUCAGAGnnn nnnnnn(nnn nnnnnnnn)n nnnnnnnnnn nnnnnn|nnn 4441 nnnnnnnnnn n|nn|nnnnn n(-nnnn-)n nnnnn--nn- nnnn|-nn|n nnnn-(nnnn 4501 nn-n)nnnnn -nnnnnnn|n nnnn|nnnnn -nnnnnnnn- -(nnnn-)-- nnnnn|nn-n 4561 nnnn|n|nnn nnnnnnnnn- nnnnnnnnn| nnnnnn-nnn nn------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS L.murrayi 4759 bp RNA RNA 31-MAR-1996 DEFINITION Listeria murrayi.; 23S ribosomal RNA; 23S rRNA gene. ACCESSION X92952 KEYWORDS 23S ribosomal RNA; 23S rRNA gene. SOURCE Listeria murrayi. ORGANISM Listeria murrayi. REFERENCE 1 (bases 1 to 2685) AUTHORS ,C. Sallen,B., Rajoharison,A., Desvarenne,S., Quinn,F. and Mabilat TITLE of Listeria Species Comparative Analysis of 16S and 23S Ribosomal RNA Sequences JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2685) AUTHORS Mabilat,C. TITLE Direct Submission JOURNAL Submitted (09-NOV-1995) C. Mabilat, UMR 103 CNRS-bioMerieux, Sondes froides, ENS Lyon. 46, allee dItalie, F- 69007 Lyon, FRANCE STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X92952 BASE COUNT 736 a 584 c 833 g 532 t 2074 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------nn nnnnnnnnn- --nnnnnnnn nnnnnnnnnn 121 n|nnnnnn|n nnnnnn|nn| nn-nnnnnnn nn|nnnn(nn nn-nn-)n|- nnn-nnnnnn 181 nnnnnn|-nn nnn(n-nn-n nnn-)nnnnn nn-nnn-nnn nnnUU|CCCG AAUGGG(GAA 241 A)CCC|ACUA UCU-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --uuaguc)- GGAUAGU-AU CC-UGACGU( 481 GA-AUACA-- UA)GCG-UUA -G-G--AAG- GCAGAC|CC- AGGGAACU|G A(AACA)UCU 541 AAGUA-CCUG GAGGAAGAGA AAGA(-AAAA --)UCGAU|U UC-CUGAGUA GC(GGCGA)G 601 CGA-AAC-GG AA-AGA-GCC CAAAccaaga -ag------- -----(cuug -)-------- 661 ----cuucuu gggguuguag gacacucuau a--------- ---------- ---------- 721 ----cggagu ua--caaaag aaggaugu-a gaugaagcgg u-c(u-ggaa a)g-gcccgc 781 |c(aga)gaC GG(UAAAAGC )CCGGU-Agu c-gaaacguc uuucccucca ---------- 841 ---------- ----gagugg auccu---GA GUACGGCGGA A(CACGUG-A AA)UUCCGUC 901 GGAAUCC-GG G-AG(GACCA U)CU-CCC-A AGGCUAA--- -AUACUCCCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-UA GUACCUGAAA CCGU-GUGCC UACAA-G-UA GUUAGAGCCC --G------- 1081 --------(- ---uuaa--) ---------- -----U-GGG UGAUAGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUU- UGUUGC-AAG GUUAAGCg-( -gaaaa)-aG 1201 C-GGAGCCGU AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC GU-------- ---------- 1261 ---------- -----augaa G-UAACAGGU CGUA-GACCC GAAAC-CAG- GUGA-UCUAC 1321 CCAUGUC|CA GGGUGAAGGU AAGG(UAAU) AC-UUACUGG AGGCCCGAAC C-CACGCAC( 1381 -GUUGAAAA) GUGCG|GGG- AUGAG-GUGU GGGUAGCGGA (-GAAAU)UC CAAUCGAACU 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCG AGGua--aa| 1501 -gag|UCgUG G|AGGUAG|A GC-ACUGU-U UGGACUA-GG |-GGCCC(uu cuc)GGGUUA 1561 CCGAAUUCAG -AUAAACUCC GAA-UG-|cc a-u-gua--- cuua----u| acu-cgggAG 1621 UCAGAC--UG C-GAGU(GAU AAG)AUCCGU -AGUC-GAAA GGG(-AAACA G-)CCCAGAC 1681 CACCAGUUAA G-GU|CCCA- AAAUA-UACG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 GGUUGCUUA- GACAACCAGG AUGUUGGC(U UAGAAGCA)G CCAC-CAU|U (GAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUG GU-----CGA GU-GAC-CC- -CGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACGUA-U|U| ACCGAAACU| GUGG|augaa cauc---(uu cg-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- gauguucgu- GG-UAGGAGA G|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCGU-U 2341 GAAGUCA-G- A-CC(-GGAA -)GGA--CUG GUGG|AGCGC U-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGAA-A GAAGGG(UGA GAAU)CCCUU C|CACC-GAA UAUCUAAGGU 2461 UUCCUG-AGG AAGG-(CUCG U)CC|G-CUC AGGGUUAGU| CGG|G-ACCU AAGCCGAGGC 2521 C(GAUA)-G- GCGU-AGGCG AUGG-ACAAC AGG-(UU-GA UAUU)C-CUG U|AC|ca-g- 2581 ug-ccg-uuu g-uuu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ----gagcaa u------ggg g--uga-cac agaaggaua- agga-au|-c g-cac(gaa- 2761 -uggaa-ag- --)gu-gcgu -|ccaa---- ---------- ---gcag-ug agug------ 2821 --ugaga-ag uagg(ca-aa -u-)cc|g-- cuucucgcga ---------a gcau-gagcu 2881 gug-augg|g ga-|------ -------agg a(aauuaag) -uacg----- ------gaag 2941 --uuccu-ga uuuc-acg-| cugucaagaa a-agccuc-u a-guua---- ------ga-a 3001 -cugua--cu g|c|CCGUAC CGCAAACC(G ACACA)GG|U AG-AUGAGG- A-(GAGAA)U 3061 CCUAAGGUGA ||GCGAGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCUCU---- ---------- ---auuaggg 3181 u(-gaaa-)g cccgag---- ---------- ---AGAG-C| C(GCA)GUGA AUAGGCC-CA 3241 GG|CGACU-- ---GU(UUAG CAAAA)ACAC AGGUCUCUG| CAAAACC(GU AA------)G 3301 GUGACGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGCGCUUA 3361 GC-------- (G-CAA)--- --------GC GA-AGGUGCG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGCAAC GA-UCUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUU |AUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCGUGG|A GCU-UUACUG C|AACCUGAU AUG|GAAUGU UUGUACCGCU UGUACAGGAU 3661 AGGUAGGAGC CUAAGAGC-- UGCGCGC(GC CA)GCGUGCA AGGAGGCAAU -G-GUGGGAU 3721 ACUACC|CUG G-CUGUAUGA CCA-UUCUAA -CCCGCC--- -ACGC(--UU -AGC)-GCGU 3781 GGGGA-GACA GUGUCAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AGAG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(A UGGAAA)UCA UUCGCA-GA| 3901 GU(G|UAAAG )GCACAAGGG AGCUUGACUG CGAGAC(UGA CAA)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGCAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-CAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACG CACCGCUGGU GUACCAGU|U GUUCC(GC-C A-)GGAGCA- UCGCUGGGUA 4381 GCU-AUGUGC GGCAGGGAUA AACGCU(GAA GGCAUCUA)A GCAnnnnnnn nnnnnn|nnn 4441 nnnnnnnnnn n|nn|nnnnn n(-nnnn-)n nnnnn--nn- nnnn|-nn|n nnnn-(nnnn 4501 nn-n)nnnnn -nnnnnnn|n nnnn|nnnnn -nnnnnnnn- -(nnnn-)-- nnnnn|nn-n 4561 nnnn|n|nnn nnnnnnnnn- nnnnnnnnn| nnnnnn-nnn nn------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS W.confusa 4759 bp RNA RNA 11-JAN-191 DEFINITION Weissella confusa subsp. was Lactobacillus confusus. ACCESSION No information KEYWORDS No information. SOURCE Weissella confusa subsp. was Lactobacillus confusus. ORGANISM Weissella confusa. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: S60375 LOCUS S60375 2862 bp DNA BCT 16-JUL-1993 DEFINITION 23S rRNA [Lactobacillus confusus, Genomic, 2862 nt] ACCESSION S60375 KEYWORDS . SOURCE Lactobacillus confusus ORGANISM Lactobacillus confusus Unclassified. REFERENCE 1 (bases 1 to 2862) AUTHORS Martinez-Murcia,A.J., Harland,N.M. and Collins,M.D. TITLE Phylogenetic analysis of some leuconostocs and related organisms as determined from large-subunit rRNA gene sequences: assessment of congruence of small- and large-subunit rRNA derived trees. JOURNAL J. Appl. Bacteriol. 74, 532-541 (1993) STANDARD full automatic COMMENT This entry [NCBI gibbsq 132132] was created by the journal scanning component of NCBI/GenBank at the National Library of Medicine. This sequence comes from Fig. 1. FEATURES Location/Qualifiers rRNA 1..2862 /note="Description: 23S rRNA" source 1..2862 /organism="Lactobacillus confusus" BASE COUNT 767 a 586 c 854 g 609 t 46 others ORIGIN BASE COUNT 767 a 586 c 854 g 609 t 1943 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------nn nnnnnnnnn- --nnnnnnnn nnnnnnnnnn 121 n|nnnnnn|n nnnnnn|nn| nn-nnNNNNN NN|NGGG(AC UA-AC-)A|- CCG-AUAUGC 181 UUCGGG|-GA GCU(G-UA-A GUA-)AGCUU UG-AUC-CGG AGAUU|UCCG AAUGGG(GGA 241 A)CCC|AACU UGU-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- -----uau)- GCAAGUU-AU CA-CCUAAU( 481 GA-AUAUA-- UA)GUA-GGU -U-G--AAG- GUAGAC|GU- UGUGAACU|G A(AACA)UCU 541 CAUUA-GCAC CAGGAAUAGA ANGA(-AAAA --)UCCAU|N CC-GCCAGUN GC(GGCGA)G 601 CGA-A-NUCG GU-AGA-GCC CAAAccaaag -ug------- -----(cuug -)-------- 661 ----cacuuu gggguuguag gacugacau- ---------- ---------- ---------- 721 ----ugugga guuacaaagu uaacauuu-a gcaGAAu-ca g-c(u-ggga a)g-cugagc 781 |g(aga)caG GG(UGAUAGC )CCCGU-Ann c-naaannnn nnnnnnnnnn n--------- 841 ---------- ----nnnnng aunnn---GA GUANGGCNGG A(CACGUG-A AA)UCCGGUC 901 GGAAUCC-GC G-AG(GACCA U)CU-CGC-A AGGCUAA--- -AUACUCCCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-AA GUUCCUGAAA CCAU-GUGCC UACAA-G-AA GUUAGAGCCC --G------- 1081 --------(- ---uuaa--) ---------- -----U-GGG UGAUAGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUA- CCAUGC-AAG GUUAAGGUg( -gaaa-)gAC 1201 C-GGAGCCGU AGC(GAAA-) GCGAGUCU(G AA-AU)GGGC GA-------- ---------- 1261 ---------- -----au-ua G-UAUGUUGU UGUA-GACCC GAAAC-CAG- GUGA-CCUAC 1321 CCAUGUC|CA GGGUGAAGGU GCGG(UAAA) AC-GCACUGG AGGCCCGAAC C-CGUGCAU( 1381 -GUUGAAAA) AUGCU|GGG- AUGAG-GUGU GGGUAGCGGU (-GAAAU)UC CAAUCGAACU 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCG GAaugu--a| 1501 -gcg|UGUUG G|AGGUAG|A GC-ACUGU-U UUGGUGC-GG |-GGCCC(au cuc)GGGUUA 1561 CCAAAUUAAG -AUAAACUCC GAA-UG-|CC A-AUC-A--- cgua----u| guc-cgggAG 1621 UCAGAC--AG U-GAGU(GAU AAG)AUCCAU -UGUC-GAAA GGG(-GAACA G-)CCCAGAU 1681 CGUCAGUUAA G-GU|CCCU- AAGUG-UGUG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 AGUUGCAUA- GACAACUAGG AUGUUGGC(U UAGAAGCA)G CCAC-CAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|GCACUA GU-----CGA GU-GAU-UC- -UGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACACA-C|C| ACCGAAACU| ACGG|gugcc ac-----(gu aa-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --guggcgc- GA-UAGGAG- -|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCGA-U 2341 GAAGUCA-G- A-CC(-GUGA -)GGA--CUG GUGG|AGCGC U-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-ANU A--GCGA-AA GACAGG(UGA GAAU)CCUGU C|CACC-GUA UGACUAAGGU 2461 UUCCUG-GGG AAGG-(CUCG U)CC|U-CCC AGGGUUAGU| CGG|G-ACCU AAGGCGAGGC 2521 C(GAGA)--- GCGU-AGUCG AUGG-AUAAC AGG-(UU-GA GAUU)C-CUG U|AC|ca-g- 2581 gu-gaa-cau --guu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---ugaacga u------gga g--gga-cgc agaaggcua- acgg-au|cc c-agc(ugc- 2761 -uggau-au- --)gc-uggg -|uuaa---- ---------- ---auaa-ua aguc------ 2821 -uuagau-cg a-gu(ua-aa -u-)gc|uuu auguuuua-- ---------a ggan--aguu 2881 aug-auga|g ga-|------ -------ccg a(aauaaag) -uagg----- ------gaag 2941 --uccgu-ga uguc-acg-| cugccgagaa a-agcuuc-u a-guua---- ------gu-g 3001 -uuuac--cu g|c|CCGUAC CGCAAACC(G ACACA)GG|U AG-UCGAGG- A-(GAGCA)U 3061 CCUAAGGUGA ||GCGAGUGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |gcucagc-- ---------- ---------- 3181 -(-gaaa-)- ---------- ---------- -gcugag-C| C(GCA)GUGA AUAGGCC-CA 3241 GG|CGACU-- ---GU(UUAU CAAAA)ACAC AGGUUUCUG| CAAAAUC(GU AA------)G 3301 AUGACGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAAA GGAGUGCUUA 3361 GC-------- (U-UCG)--- --------GC GA-AGGUACG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGUAAC GA-UCUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUU |UANNUAC-C CG(UGANGAU G)CGGGUUAC CCGCGAC-AG GACGGNAAGA 3601 CCCCAUGG|A GCU-UUACUG U|AGCUUGAU AUU|GAGUGU UUGUGCAGCU UGUACAGCAU 3661 AGGUAGGAGC CGUAGAUA-- CCGGGAC(GC UA)GUUUCGG UGGAGGCGUC -A-UUGGGAU 3721 ACUACC|CUC G-UUGUAUGA CCA-CUCUAA -CUCGCA--- -CCAC(--UA -AGC)-GUGG 3781 UGGAA-GACA GUGUCUGGCA GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAGG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(U UGGAAA)UCA UUCGCA-GA| 3901 GU(G|UAAAG )GCACAAGGG AGCUUGACUG UGAGAC(UUA CCA)GUCGAG CAGGUAC(GA 3961 AA)GU-AGGG |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 ACAAAAGCUA CCC|UGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-UAG 4261 GAAAUUU|GA -|GAGGAGC- UGC------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGGUGG|ACG UACCUCUGGU GUAUCAGU|U GUUCC(GC-C A-)GGAGCA- UCGCUGAGUA 4381 GCU-AUGUAC GGAUGAGAUA AACGCU(GAA AGCAUCUA)A GUGUGAAACU CGCCUC|GAG 4441 AUGAGAUUUC C|CA|UUC-- -(uuuau-)- --GAA--GU- AAGA|-CC|C CUCA-(GAGA 4501 UG-A)UGAGG -UAGAUAG|G CUAG|AAGUG -GAAGUGCG- -(GCGA-)-- CGCAU|GG-A 4561 GCGG|A|CUA GUACUAAUG- GUUCGA-GG| ACUUAA-CCA A-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS W.paramese 4759 bp RNA RNA 11-JAN-191 DEFINITION Weissella paramesenteroides subsp. was Leuconostoc paramesenteroides. ACCESSION No information KEYWORDS No information. SOURCE Weissella paramesenteroides subsp. was Leuconostoc paramesenteroides. ORGANISM Weissella paramesenteroides. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: S60373 LOCUS S60373 2863 bp DNA BCT 16-JUL-1993 DEFINITION 23S rRNA [Leuconostoc paramesenteroides, Genomic, 2863 nt] ACCESSION S60373 KEYWORDS . SOURCE Leuconostoc paramesenteroides ORGANISM Leuconostoc paramesenteroides Unclassified. REFERENCE 1 (bases 1 to 2863) AUTHORS Martinez-Murcia,A.J., Harland,N.M. and Collins,M.D. TITLE Phylogenetic analysis of some leuconostocs and related organisms as determined from large-subunit rRNA gene sequences: assessment of congruence of small- and large-subunit rRNA derived trees. JOURNAL J. Appl. Bacteriol. 74, 532-541 (1993) STANDARD full automatic COMMENT This entry [NCBI gibbsq 132131] was created by the journal scanning component of NCBI/GenBank at the National Library of Medicine. This sequence comes from Fig. 1. FEATURES Location/Qualifiers rRNA 1..2863 /note="Description: 23S rRNA" source 1..2863 /organism="Leuconostoc paramesenteroides" BASE COUNT 793 a 601 c 863 g 601 t 5 others ORIGIN BASE COUNT 793 a 601 c 863 g 601 t 1901 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------nn nnnnnnnnn- --nnnnnnnn nnnnnnnnnn 121 n|nnnnnn|n nnnnnn|nn| nn-nnUGAAG GA|CGGG(AC UA-AC-)A|- CCG-AUAUGC 181 CUCGGG|-GA GCU(G-UA-A GUA-)AGCUG UG-AUC-CGG GGAUU|UCCG AAUGGG(GGA 241 A)CCC|AACU UGU-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- -----cau)- GCAAGUU-AU CG-UUUAAU( 481 GA-AUACA-- UA)GUU-AAA -C-G--AAG- GUAGAC|GU- UGUGAACU|G A(AACA)UCU 541 CAUUA-GCAA CAGGAGAAGA AAGA(-AAAA --)UCGAU|U CC-GUCAGUA GC(GGCGA)G 601 CGA-ACG-CG GA-GGA-GCC CAAAccagag -ug------- -----(cuug -)-------- 661 ----cacucu gggguuguag gacuaccgu- ---------- ---------- ---------- 721 ----ugugga guuacaaauu uguuuauu-a gcaGAAu-ca g-c(u-ggga a)g-cugagc 781 |g(aaa)caG GG(UGAUAGC )CCCGU-Aug c-gaaaguaa gcaaacuccc g--------- 841 ---------- ----uguagg auccu---GA GUACGGCCGG A(CACGUG-A AA)UCCGGUC 901 GGAAACU-GC G-AG(GACCA U)CU-CGU-A AGGCUAA--- -AUACUCCCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-AA GUUCCUGAAA CCAU-GUGCC UACAA-C-AA GUUAGAGCCC --G------- 1081 --------(- ---uuaa--) ---------- -----U-GGG UGAUAGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUA- CCAUGC-AAG GUUAAGGUg( -gaaa-)gAC 1201 C-GGAGCCGU AGC(GAAA-) GCGAGUCU(G AA-AU)GGGC GU-------- ---------- 1261 ---------- -----uu-ua G-UAUGUUGU UGUA-GACCC GAAAC-CAG- GUGA-CCUAC 1321 CCAUGUC|CA GGGUGAAGGU GCGG(UAAA) AC-GCACUGG AGGCCCGAAC C-CGUACAU( 1381 -GUUGAAAA) AUGUU|GGG- AUGAG-GUGU GGGUAGCGGU (-GAAAU)UC CAAUCGAACU 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCG GAagau--a| 1501 -gcg|UGUUG G|AGGUAG|A GC-ACUGU-U UUGGUGC-GG |-GGCCC(au cuc)GGGUUA 1561 CUAAAUUAAG -AUAAACUCC GAA-UG-|CC A-AUC-A--- cgua----u| guc-cgggAG 1621 UCAGAC--AG U-GAGU(GAU AAG)AUCCAU -UGUC-GAAA GGG(-GAACA G-)CCCAGAU 1681 CGUCAGUUAA G-GU|CCCU- AAGUG-UGUG -U-UAA-GUG ------GAAA AGGAUGUG-A 1741 AGUUGCAUA- GACAACUAGG AUGUUGGC(U CAGAAGCA)G CCAC-CAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUA GU-----CGA GU-GAU-UC- -UGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACACA-C|C| ACCGAAACU| ACGG|gugcc ac-----(gu aa-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --gu-gcgc- AA-UAGGAGA G|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCAA-U 2341 GAAGUCA-G- A-CC(-GUGA -)GGA--CUG GUGG|AGCGC U-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGA-AA GACAGG(UGA GAAU)CCUGU C|CACC-GUA UGACUAAGGU 2461 UUCCUG-GGG AAGG-(CUCG U)CC|U-CCC AGGGUUAGU| CGG|G-ACCU AAGGCGAGGC 2521 C(GAAA)--- GCGU-AGUCG AUGG-CUAAC AGG-(UU-GA GAUU)C-CUG U|AC|ca-g- 2581 gu-gaa-cau --guu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---ugaacga u------gga g--gga-cgc agaaggcua- acag-aa|cc c-agc(ggc- 2761 -uggaa-au- --)gc-uggg -|ccaa---- ---------- ---gcaa-ca aguc------ 2821 -uuagug-ug a-gu(ca-aa -u-)gc|u-- ugcacuuaua ---------c ggac-aaguu 2881 gug-augg|g ga-|------ -------ccg a(aauaaag) -uagg----- ------gaag 2941 --ucugu-ga uguc-acg-| cugccgagaa a-agcuuc-u a-guua---- ------gu-g 3001 -uuuac--cu g|c|CCGUAC CGCAAACC(G ACACA)GG|U AG-UCGAGG- A-(GAGCA)U 3061 CCUAAGGUGA ||GCGAGAGA ACACUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |gcucagc-- ---------- ---------- 3181 -(-gcaa-)- ---------- ---------- --nunnn-n| C(GCA)GUGA AUAGGCC-CA 3241 GG|CGACU-- ---GU(UUAU CAAAA)ACAC AGGUUUCUG| CAAAAUC(GU AA------)G 3301 AUGACGU-AU AGGGGCUGA- CACCUGCCCG GU|GCUG-GA A-GGUUAAAA GGAGUGCUUA 3361 GC-------- (U-UCG)--- --------GC GA-AGGUACG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGUAAC GA-UCUGGGC GCUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUU |UAAAGAC-C CG(UGAAGAU G)CGGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCAUGG|A GCU-UUACUG U|AGCUUGAU AUU|GAGUGU UUGUGCAGCU UGUACAGCAU 3661 AGGUAGGAGC CGUAGAAA-- UCGGGAC(GC UA)GUUUCGA UGGAGGCAAA -C-GUGGGAU 3721 ACUACC|CUC G-UUGUAUGA ACA-CUCUAA -CUCACA--- -CCAC(--UC -AGC)-GUGG 3781 UGGAA-GACA GUGUCUGGCA GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAGG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(U UGGAAA)UCA UUCGCA-GA| 3901 GU(G|UAAAG )GCACAAGGG AGCUUGACUG UGAGAC(UUA CCA)GUCGAG CAGGUAC(GA 3961 AA)GU-AGGG |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 ACAAAAGCUA CCC|UGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-UAG 4261 GAAAUUU|GA -|GAGGAGC- UGC------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGGUGG|ACG UACCACUGGU GUAUCAGU|U GUUCC(GC-C A-)GGAGCA- UCGCUGAGUA 4381 GCU-AUGUAC GGAUGAGAUA AACGCU(GAA AGCAUCUA)A GUGUGAAACU CGCCUC|GAG 4441 AUGAGAUUUC C|CA|UUCA- -(-GAAA-)- -UGAA--GU- AAGA|-CC|C CUCA-(GAGA 4501 UG-A)UGAGG -UAGAUAG|G CUAG|AAGUG -GACGUGCG- -(GUGA-)-- C-CAU|GG-A 4561 GCGG|A|CUA GUACUAAUG- GUUCGA-GG| ACUUAA-CCA A-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS O.oeni 4759 bp RNA RNA 11-JAN-191 DEFINITION Oenococcus oeni subsp. was Leuconostoc oenos. ACCESSION No information KEYWORDS No information. SOURCE Oenococcus oeni subsp. was Leuconostoc oenos. ORGANISM Oenococcus oeni. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: S60377 LOCUS S60377 2838 bp DNA BCT 16-JUL-1993 DEFINITION 23S rRNA [Leuconostoc oenos, Genomic, 2838 nt] ACCESSION S60377 KEYWORDS . SOURCE Leuconostoc oenos ORGANISM Leuconostoc oenos Unclassified. REFERENCE 1 (bases 1 to 2838) AUTHORS Martinez-Murcia,A.J., Harland,N.M. and Collins,M.D. TITLE Phylogenetic analysis of some leuconostocs and related organisms as determined from large-subunit rRNA gene sequences: assessment of congruence of small- and large-subunit rRNA derived trees. JOURNAL J. Appl. Bacteriol. 74, 532-541 (1993) STANDARD full automatic COMMENT This entry [NCBI gibbsq 132133] was created by the journal scanning component of NCBI/GenBank at the National Library of Medicine. This sequence comes from Fig. 1. FEATURES Location/Qualifiers rRNA 1..2838 /note="Description: 23S rRNA" source 1..2838 /organism="Leuconostoc oenos" BASE COUNT 821 a 558 c 811 g 647 t 1 others ORIGIN BASE COUNT 821 a 558 c 811 g 647 t 1922 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------nn nnnnnnnnn- --nnnnnnnn nnnnnnnnnn 121 n|nnnnnn|n nnnnnn|nn| nn-nnUGAAG GA|CGUG(AC UA-AC-)U|- ACG-AUAUGC 181 CUCGGU|-UA GCU(G-UA-A GUA-)AGCUU ---ACC-CGG GGGUU|UCCG AAUGGG(GCA 241 A)CCC|GAUC ----(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uuaau)- ---GAUCauC AU-CUUUUU( 481 GA-AUUCA-- UA)GAU-UAG -A-U--GAA- GCAAAC|GC- UGUGAACU|G A(AACA)UCU 541 AAGUA-GCAG UAGGAAAGUA AAGA(-AAUU U-)GCGAU|U CC-GUCAGUA GC(GGCGA)G 601 CGA-ACG-CG -A-AGA-GCC CAAAccugga -ug------- -----(cuug -)-------- 661 ----caucca gggguuguag gacuga---- ---------- ---------- ---------- 721 ----uguuga guuacaaagg uauaagau-a gcaGAAa-ca g-u(u-ggga a)g-cuguuc 781 |c(aaa)gaG GG(UGACAGG )CCCGU-Aug c-gaaaucuu guacucucua ---------- 841 ---------- ----aucagg auccu---GA GUACGGCCCA G(CACGUG-A AA)UUGGGUC 901 GGAAUCU-GG G-AG(GACCA U)CU-CCC-A AGGCUAA--- -AUACUAACU AGUGACCGAU 961 AGCG-AAC-A AGUACC(GUG A)-GGGA-AA GGUGAAAA-G AACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-UA GUUCUUGAAA CCGU-GUGCU UACAA-G-AA GUUCGAGGCC --G------- 1081 --------(- ---uuaa--) ---------- -----U-GGC UGAGAGCGUG CUU(UUU-GU 1141 AG|A)AUGA| -ACCGGAGAG UUAC-GAUU- GCGUGC-AAG GUUAAGGU-( -gcaaa)gAC 1201 U-GGAGCCGU AGC(GAAA-) GCGAGUCU(U AA-UA)GGGC GA-------- ---------- 1261 ---------- -----au-ca G-UACGUAGU UGUA-GACCC GAAAC-CGA- GUGA-CCUAU 1321 CCAUGGU|CA GGUUGAAGGU GGGG(UAAU) AC-CUACUGG AGGACCGAAC A-AGUGGGU( 1381 -GUUAAAAA) ACCCU|UUG- AUGAA-CUGU GGAUAGCGGU (-GAAAU)UC CAAUCGAACU 1441 CGGAGAUAGC UGGUUCUAUC CGAAAUACAU (-UUAG)GUG UAGC|-CUUG CAauu---a| 1501 -gcu|UACUG G|AGGUAG|A GC-ACUAU-U UGGUCUA-GG |-GGCCC(uu caa)GGGUUA 1561 CCAAAAUCAG -AUAAACUCC GAA-UG-|CC A-GCU-A--- ngua----u| gug-caggAG 1621 UCAGAC--GG U-GAGU(GAU AAG)AUCCAU -CGUC-AAAA GGG(-GAACA G-)CCCAGAU 1681 CACCAGUUAA G-GU|CCCU- AAAUA-UAUG -C-UAA-GUG ------GAAA ACGUUGUG-A 1741 AGGUGCAUA- GACAACUAGG AGGUUGGC(U CAGAAGCA)G CCAC-CCU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUA GU-----CGA GU-GCU-CU- -UGC|GCGGA UAAU-GUAC- 1861 CGGGGCU-AA GCAUA-U|U| ACCGAAACU| GUGG|augc- -------(gu aa-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -----g-au- GG-UAGGAUA G|-----CGU 2221 A-AUU-AA-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --C-GCGA-U 2341 GAAGGGAUG- A-CC(-GUAA -)G-A-CAUG UUGG|AGCGU U-AACUAGUG AGAAUUC-CG 2401 GU|AUG-AGU A--GCGA-AA GAUAGG(UGA GAAU)CCUAU C|CACC-GAA UGAGUAAGGU 2461 UUCCCC-CGG AAGG-(CUCG U)CC|G-CGG GGGGUUAGU| CGG|G-ACCU AAGGCGAGGC 2521 U(GAAA)-A- GCGU-AGUCG AUGG-ACAAC AGG-(UU-GA UAUU)C-CUG U|AC|cg-a- 2581 ua-uuuaauu ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 -----gccga a------gga a--gga-cgc agaaggaua- acac-ag|gc c-acu(au-- 2761 -uggau-gu- --)gg-uuu- -|uaa----- ---------- ---acag-uu aguc------ 2821 -uucaua-ag a-gu(ca-aa -u-)gc|u-- uuuauguuua ---------a ggau-aagcu 2881 gug-aaug|u ac-|------ -------caa g(-uuua--) cuug------ ------gaaa 2941 -uugugu-ga uuuc-acg-| cugcugaaaa a-aguuucgu a-gga----- ------ag-a 3001 -aaaua--uu g|c|CCGUAC CGCAAACC(G ACACA)GG|U AC-UCGAGU- G-(GAGAA)C 3061 ACUAAGGUGA ||GCGAGAGA ACUAUUGUU- ---------- ----AAGGAA CUCUGCAAAA 3121 UGAGUCCGUA AC(-UUCG)G AAGAAGGACU |gcuggu--- ---------- ---------- 3181 -(-uuuau)- ---------- ---------- --accag-C| C(GCA)GCAA AUAGGCC-CA 3241 AA|CAACU-- ---GU(UUAU CAAAA)ACAC AGGUUUCUG| CAAAAUC(GU AA------)G 3301 AUGAAGU-AU AGGGGCUGA- CGCCUGCCCA GU|GCUG-GA A-GGUUAAAA GGAGGACUUA 3361 GC-------- (U-UCG)--- --------GC GA-AGGUCUU AAUUGAAGCC |CCAGUGAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGUAAC GA-UUUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUU |UAAAUAC-C CG(UGAAGAU G)CGGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCAUGG|A GCU-UUACUG U|AGCUUGAU AUU|GAGUGU UUGUGCAACU UGUACAGGAU 3661 AGGUAGGAGC CAUAGAAA-- UCGGGAC(GC UA)GUCUCGG UGGAGGCAUU -G-GUGGGAU 3721 ACUACC|CUC G-UUGUAUGA ACA-CUCUAA -CCCUCA--- -CCAA(--UA -AAC)-GUGG 3781 UGGGA-GACA GUGUCAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAGA 3841 UAAC)GGAGG C|G|C|UCAA AGGUUUGC|U CAGAAUGG(U UGGAAA)UCA UUCGUA-GC| 3901 GU(G|UAAAG )GCAUAAGCA AGCUUGACUG UGAGAC(UGA CAA)GUCGAG CAGGUAC(GA 3961 AA)GU-AGGA |CUUAGUGAU CCGGUGGUUC CG(UAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 ACAAAAGCUA CCC|CGGG|G AUAACAG|GC UCA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| U-GGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGUG G-G|CG-CAG 4261 GAAAUUU|GA -|GAGGAUC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACA UACCUCUGGU GUACCAGU|U GUUCU(GC-C A-)AGAGCA- CCGCUGGGUA 4381 GCU-ACGUAU GGAUUAGAUA AUCGCU(GAA AGCAUCUA)A GUGAGAAACU AACCUC|GAG 4441 AUGAGAUUUC C|CA|UUC-- -(-guca-)- --GAA--GU- AAGA|-CC|C CUGA-(GAGA 4501 CG-A)UCAGG -UAGAUAG|G CUAG|AAGUG -GAAGUGUA- -(GUGA-)-- UGCAU|GG-A 4561 GCGG|A|CUA GUACUAAUA- GGUCGA-GG| ACUUAA-CCA A-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS L.mesent.1 4759 bp RNA RNA 11-JAN-191 DEFINITION Leuconostoc mesenteroides. ACCESSION No information KEYWORDS No information. SOURCE Leuconostoc mesenteroides. ORGANISM Leuconostoc mesenteroides. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: S60370 LOCUS S60370 2863 bp DNA BCT 16-JUL-1993 DEFINITION 23S rRNA [Leuconostoc mesenteroides, Genomic, 2863 nt] ACCESSION S60370 KEYWORDS . SOURCE Leuconostoc mesenteroides ORGANISM Leuconostoc mesenteroides Unclassified. REFERENCE 1 (bases 1 to 2863) AUTHORS Martinez-Murcia,A.J., Harland,N.M. and Collins,M.D. TITLE Phylogenetic analysis of some leuconostocs and related organisms as determined from large-subunit rRNA gene sequences: assessment of congruence of small- and large-subunit rRNA derived trees. JOURNAL J. Appl. Bacteriol. 74, 532-541 (1993) STANDARD full automatic COMMENT This entry [NCBI gibbsq 132129] was created by the journal scanning component of NCBI/GenBank at the National Library of Medicine. This sequence comes from Fig. 1. FEATURES Location/Qualifiers rRNA 1..2863 /note="Description: 23S rRNA" source 1..2863 /organism="Leuconostoc mesenteroides" BASE COUNT 823 a 579 c 843 g 614 t 4 others ORIGIN BASE COUNT 823 a 579 c 843 g 614 t 1900 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------nn nnnnnnnnn- --nnnnnnnn nnnnnnnnnn 121 n|nnnnnn|n nnnnnn|nn| nn-nnUGAAG GA|CGUG(AC UA-AC-)N|- ACG-AUAAGC 181 UUUGGU|-GA GCG(G-UA-A GUA-)CGCUA UG-ACC-CAA AGAUU|UCCG AAUGGG(GAA 241 A)CCC|AACU C---(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----guaa)- --GAGUU-GU CU-GUAUCU( 481 GA-AUACA-- UA)GGA-UAU -UUG--ACG- GAAUAC|GC- UGUGAACU|G A(AACA)UCU 541 CAUUA-GCAG CAGGAGCAGA AAGA(-AAAA --)UCGAU|U CC-CUAAGUA GC(GGCGA)G 601 CGA-ACG-GG GA-AGA-GCC CAAAccaacg -ug------- -----(cuug -)-------- 661 ----cauguu gggguuguag gacugauau- ---------- ---------- ---------- 721 ----auaaga guuacaaaag uguuuuau-a gcaGAAc-aa g-u(u-ggga a)a-cuuggc 781 |u(aua)gaG GG(UGAUAGC )CCCGU-Aag c-gaaaugaa gcacacucuu ---------- 841 ---------- ----uucagg auccu---GA GUACGGCCGG A(CACGUG-A AA)UCCGGUC 901 GGAAUCU-GC G-GG(GACCA U)CC-CGU-A AGGCUAA--- -AUACUCCCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-UA GUUCCUGAAA CCACgACGCC UACAA-G-AA GUCAGAGCCC --G------- 1081 --------(- ---uuaa--) ---------- -----U-GGG UGAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GGUA- UCGUGC-GAG GUUAAGGUg( -gaaa-)gAC 1201 C-GGAGCCGC AGC(GAAA-) GCGAGUGU(G AA-UA)GCGC GA-------- ---------- 1261 ---------- -----au--a G-UACGAUGC UGUA-GACCC GAAAC-CAA- GUGA-CCUAC 1321 CCAUGGU|CA GGAUGAAGGU GAGG(UAAA) AC-UUACUGG AGGUCCGAAC C-GGUGCAU( 1381 -GUUAAAAA) AUGCU|CGG- AUGAA-CUGU GGGUACGGGU (-GAAAU)UC CAAACGAACA 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCA UUau---aa| 1501 -gca|UACUG G|AGGUAG|A GC-ACUGU-U AAGCCUA-GG |-GGCCC(au cuc)GGGUUA 1561 CCAAAGUUUG -AUAAACUCC GAA-UG-|CC A-GAU-A--- ugua----u| gaa-ugggAG 1621 UCAGAC--GA U-GAGU(GAU AAG)AUCCAC -CGUC-GAAA GGG(-GAACA G-)CCCAGAU 1681 CGCCAGUUAA G-GU|CCCU- AAAUA-UAUG -U-UAA-GUG ------GAAA ACGAUGUG-A 1741 UAGUGCAUA- GACAACUAGG AUGUUGGC(U UAGAAGCA)G CCAC-CAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUA GU-----CGA GU-GCC-AU- -UGC|GCGGA AAAU-GUAC- 1861 CGGGGCU-AA ACAUA-U|U| ACCGAAACU| GCGG|gugc- -------(ac guaa------ 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -----gugc- GA-UAGGAGA G|-----CGU 2221 U-CUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCGA-C 2341 GAAGGUA-G- A-UC(-GUAA -)GGA--CUG CUGG|AGCGC U-UACAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGA-AA G-CAGG(UGA GAAU)CCUGU C|CACC-GAA UGACUAAGGU 2461 UUCCUG-GGG AAGG-(CUCG U)CC|A-CCC AGGGUUAGU| CGG|G-ACCU AAGGCGAGGC 2521 U(GAGA)-A- GCGU-AGUCG AUGG-AUAAC AGG-(UU-GA GAUU)C-CUG U|AC|ca-g- 2581 uuguaa-ugc --guu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 --auuaccga u------gga g--gga-cgc aggaggcua- ccag-au|gc g-cac(uga- 2761 -uggau-au- --)gu-gcgu -|gcaa---- ---------- ---gcag-ua aguc------ 2821 -uugaaa-ag a-gu(ga-aa -u-)gc|u-- uuuuucuaua ---------a ggac-aagcu 2881 gug-augc|g ga-|------ -------ucg a(aauaaag) -uaga----- ------gaag 2941 --ucuga-ga cguc-aca-| cugccgagaa a-agcuuc-u a-ggaa---- ------gu-a 3001 -uuaca--cu g|c|CCGUAC CGCAAACC(G ACACA)GG|U AG-UCGAGU- G-(GAGAA)C 3061 ACUAAGGUGA ||GCGAGAGA ANNCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-NUCG)G GAGAAGGGGU |gcucaug-- ---------- ---------- 3181 g(-uaaa-)a ---------- ---------- -caugag-C| C(GCA)GUGA AUAGGCC-CA 3241 GG|CGACU-- ---GU(UUAU CAAAA)ACAC AGGUUUCUG| CAAAAUC(GU AA------)G 3301 AUGAAGU-AU AGGGGCUGA- CACCUGCCCG GU|GCUG-GA A-GGUUAAAA GGAGUGCUUA 3361 GC-------- (U-UCG)--- --------GC GA-AGGUACG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGUAAC GA-UCUGGGC ACUGUCUCAA CGAGGGACUC 3541 G|GUGAAAUU |UAAAUAC-C CG(UGAAGAU G)CGGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCAUGG|A GCU-UUACUG U|AGCUUGAU AUU|GAAUGU UUGUGCUGCU UGUACAGAAU 3661 AGGUAGGAGA CGUAGAAG-- AUUGGAC(GC UA)GUCUAGU CGGAGUCGca cg-GUGGGAU 3721 ACUACC|CUC G-UUGUAUGA ACA-UUCUAA -CACUGG--- -UCAC(--UC -AAC)-GUGA 3781 UCGUG-GACA GUGUCUGGCG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAGG 3841 UAAC)GGAGG C|G|C|UCAA AGGUUUGC|U CAGAAUGG(U UGGAAA)UCA UUCGUA-GC| 3901 GU(G|UAAAG )GCAUAAGCA AGCUUGACUG CGAGAG(CUA CAA)CUCGAG CAGGUAC(GA 3961 AA)GU-AGGA |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|UGGG|G AUAACAG|GC UCA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| U-GGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-CAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACA UACCGCUGGU GUACCAGU|U GUUCC(GC-C A-)GGAGCA- UUGCUGGGUA 4381 GCU-AUGUAU GGAUGAGAUA AACGCU(GAA AGCAUCUA)A GUGUGAAACU CGCCUC|GAG 4441 AUGAGAUUUC C|CA|UCUAU -(-uua--)- AUAGA--GU- AAGA|-CC|C CUUA-(GAGA 4501 UG-A)UGAGG -UAGAUAG|G CUAG|AAGUG -GAAGUUGA- -(GUGA-)-- UCAAU|GG-A 4561 GCGG|A|CUA GUACUAAUA- GGUCGA-GG| ACUUAA-CCA A-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS L.mesent.2 4759 bp RNA RNA 08-JAN-1997 DEFINITION Leuconostoc mesenteroides.; 23S ribosomal RNA; 23S rRNA gene. ACCESSION Z75487 KEYWORDS 23S ribosomal RNA; 23S rRNA gene. SOURCE Leuconostoc mesenteroides. ORGANISM Leuconostoc mesenteroides. REFERENCE 1 (bases 1 to 2916) AUTHORS Nour,M. and Branlant,C. TITLE spacers in Leuconostoc: primary and secondary structure A comparative analysis of 23S ribosomal RNA and intergenic JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2916) AUTHORS Nour,M. TITLE Direct Submission JOURNAL Submitted (20-JUN-1996) M. Nour, Laboratoire d'Enzymologie et de Genie, Genetique URA CNRS, 457 Bld des Aiguillettes, BP 239 Faculte des Sciences, 54506 Vandoeuvere-Les-Nancy CEDEX, FRANCE STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: Z75487 BASE COUNT 831 a 594 c 867 g 624 t 1843 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGUUAA- --UAAGGGCG CGUGGUGGAU 121 G|CCUUGG|C ACUAGG|AG| CC-GAUGAAG GA|CGUG(AC UA-AC-)U|- ACG-AUAAGC 181 UUUGGU|-GA GCG(G-UA-A GUA-)CGCUA UG-ACC-CAG AGAUU|UCCG AAUGGG(GAA 241 A)CCC|AACU C---(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----guaa)- --GAGUU-GU CU-GUAUCU( 481 GA-AUACA-- UA)GGA-UAU -UUG--ACG- GAAUAC|GC- UGUGAACU|G A(AACA)UCU 541 CAUUA-GCAG CAGGAGCAGA AAGA(-AAAA --)UCGAU|U CC-CUAAGUA GC(GGCGA)G 601 CGA-ACG-GG GA-AGA-GCC CAAACCAACG -UG------- -----(cuug -)-------- 661 ----CAUGUU GGgguuguag gacugauau- ---------- ---------- ---------- 721 ----auaaga guuacaaaag uguuuuau-a gcaGAAc-aa g-u(u-ggga a)a-cuugGC 781 |U(AUA)GAG GG(UGAUAGC )CCCGU-AAG C-gaaaugaa gcacacucuu ---------- 841 ---------- ----uucagg auccu---GA GUACGGCCGG A(CACGUG-A AA)UCCGGUC 901 GGAAUCU-GC G-GG(GACCA U)CC-CGU-A AGGCUAA--- -AUACUCCCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-UA GUUCCUGAAA CCACgACGCC UACAA-G-AA GUCAGAGCCC --G------- 1081 --------(- ---uuaa--) ---------- -----U-GGG UGAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GGUA- UCGUGC-GAG GUUAaggug( -gaaa-)gac 1201 c-GGAGCCGC AGC(GAAA-) GCGAGUGU(G AA-UA)GCGC GA-------- ---------- 1261 ---------- -----au--a g-UACGAUGC UGUA-GACCC GAAAC-CAA- GUGA-CCUAC 1321 CCAUGGU|CA GGAUGAAGGU GAGG(UAAA) AC-UUACUGG AGGUCCGAAC C-GGUGCAU( 1381 -GUUAAAAA) AUGCU|CGG- AUGAA-CUGU GGGUAGCGGU (-GAAAU)UC CAAACGAACU 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCG UAau---ga| 1501 -gga|UACUG G|AGGUAG|A GC-UCUGU-U UGGACUA-GG |-GGCCC(gu caa)GGGUUA 1561 CUGAAUUCAG -AUAAACUCC GAA-UU-|CC A-GAU-A--- ucca----u| aca-cgggAG 1621 UCAGAC--UG C-GAGU(GAU AAG)AUCCGC -AGUC-GAAA GGG(-AAACA G-)CCCAGAU 1681 CACCAGUUAA G-GU|CCCA- AAAUA-UAUG -C-UAA-GUG ------GAAA AGGAUGUG-G 1741 AGUUGCGCA- GACAACUAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (CAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUA GU-----CGA GU-GAC-GC- -UGC|GCCGA AAAU-UUAC- 1861 CGGGGCU-AA GCAUA-U|U| ACCGAAACU| GUGG|gugcg c------(gu aa-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ---gcacgc- GA-UAGGAGA G|-----CGU 2221 U-GUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --c-GCGA-U 2341 GAAGGGA-G- A-UC(-GUAA -)GGA--CUG CUGG|AGCGC U-UACAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGA-AA GACAGG(UGA GAAU)CCUGU C|CACC-GAA UGACUAAGGU 2461 UUCCUG-GGG AAGG-(CUCG U)CC|A-CCC AGGGUUAGU| CGG|G-ACCU AAGGCGAGGC 2521 U(GAGA)-A- GCGU-AGUCG ACGG-AUAAC AGG-(UU-GA GAUU)C-CUG U|AC|ca-g- 2581 uuguaa-ugc --guu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 --auuaccga u------gga g--gga-cgc aggaggcua- ccag-au|cc g-cac(uga- 2761 -uggau-au- --)gu-gcgu -|gcaa---- ---------- ---gcag-ua aguc------ 2821 -uugaaa-ag a-gu(ga-aa -u-)gc|u-- uuuuucuaua ---------a ggac-aagcu 2881 gug-augc|g ga-|------ -------ucg a(aauaaag) -uaga----- ------gaag 2941 --ucugc-ga uguc-aca-| cugccgagaa a-agcuuc-u a-ggaa---- ------gu-a 3001 -uuaca--cu g|c|CCGUAC CGCAAACC(G ACACA)GG|U AG-UCGAGU- G-(GAGAA)C 3061 ACUAAGGUGA ||GCGAGAGA ACCCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |ccucaug-- ---------- ---------- 3181 g(-uaaa-)a ---------- ---------- -caugag-C| C(GCA)GUGA AUAGGCC-CA 3241 GG|CGACU-- ---GU(UUAU CAAAA)ACAC AGGUUUCUG| CAAAAUC(GU AA------)G 3301 AUGAAGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAAA GGAGUGCUUA 3361 GC-------- (U-UCG)--- --------GC GA-AGGUACG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGUAAC GA-UCUGGGC ACUGUCUCAA CGAGGGACUC 3541 G|GUGAAAUU |UAAAUAC-C CG(UGAAGAU G)CGGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCAUGG|A GCU-UUACUG U|AGCUUGAU AUU|GAAUGU UUGUGCUGCU UGUACAGAAU 3661 AGGUAGGAGA CGAAGAAA-- UUUGGAC(GC CA)GUCUAGA CGGAGUCGAA -AUGUGGGAU 3721 ACUACC|CUC G-UUGUAUGA ACA-UUCUAA -CACUGG--- -UCGC(--uu -auc)-GCGA 3781 UCGUG-GACA GUGUCUGGCG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAGG 3841 UAAC)GGAGG C|G|C|UCAA AGGUUUGC|U CAGAAUGG(U UGGAAA)UCA UUCGUA-GC| 3901 GU(G|UAAAG )GCAUAAGCA AGCUUGACUG CGAGAG(UUA CAA)CUCGAG CAGGUAC(GA 3961 AA)GU-AGGA |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|UGGG|G AUAACAG|GC ACA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC C-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-CAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACA UACCGCUGGU GUACCAGU|U GUUCC(GC-C A-)GGAGCA- UUGCUGGGUA 4381 GCU-AUGUAU GGAUGAGAUA AACGCU(GAA AGCAUCUA)A GUGUGAAACU CGCCUC|GAG 4441 AUGAGAUUUC C|CA|UCUAU -(-uua--)- AUAGA--GU- AAGA|-CC|C CUUA-(GAGA 4501 UG-A)UGAGG -UAGAUAG|G CUAG|AAGUG -GAAGUUGA- -(GUGA-)-- UCAAU|GG-A 4561 GCGG|A|CUA GUACUAAUA- GGUCGA-GG| ACUUAA-CCA A-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS L.mes.dext 4759 bp RNA RNA 08-JAN-1997 DEFINITION Leuconostoc mesenteroides dextranicum.; 23S ribosomal RNA; 23S rRNA gene. ACCESSION Z75490 KEYWORDS 23S ribosomal RNA; 23S rRNA gene. SOURCE Leuconostoc mesenteroides dextranicum. ORGANISM Leuconostoc mesenteroides dextranicum. REFERENCE 1 (bases 1 to 2916) AUTHORS Nour,M. and Branlant,C. TITLE A comparative analysis of 23S ribosomal RNA and intergenic spacers in Leuconostoc: primary and secondary structure JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2916) AUTHORS Nour,M. TITLE Direct Submission JOURNAL Submitted (20-JUN-1996) M. Nour, Laboratoire d'Enzymologie et de Genie, Genetique URA CNRS, 457 Bld des Aiguillettes, BP 239 Faculte des Sciences, 54506 Vandoeuvere-Les-Nancy CEDEX, FRANCE STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: Z75490 BASE COUNT 833 a 594 c 865 g 624 t 1843 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGUUAA- --UAAGGGCG CGUGGUGAAU 121 G|CCUUGG|C ACUAGG|AG| CC-GAUGAAG GA|CGUG(AC UA-AG-)U|- ACG-AUAAGC 181 UUUGGU|-GA GCG(G-UA-A GUA-)CGCUA UG-ACC-CAA AGAUU|UCCG AAUGGG(GAA 241 A)CCC|AACU C---(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----guaa)- --GAGUU-GU CU-GUAUCU( 481 CA-AUACA-- UA)GGA-UAU -UUG--ACG- GAAUAC|GC- UGUGAACU|G A(AACA)UCU 541 CAUUA-GCAG CAGGAGCAGA AAGA(-AAAA --)UCGAU|U CC-CUAAGUA GC(GGCGA)G 601 CGA-ACG-GG GA-AGA-GCC CAAACCAACG -UG------- -----(cuug -)-------- 661 ----CAUGUU GGgguuguag gacugauau- ---------- ---------- ---------- 721 ----auaaga guuacaaaag uguuuuau-a gcaGAAc-aa g-u(u-ggga a)a-cuugGC 781 |U(AUA)GAG GG(UGAUAGC )CCCGU-AAG C-gaaaugaa gcacacucuu ---------- 841 ---------- ----uucagg auccu---GA GUACGGCCGG A(CACGUG-A AA)UCCGGUC 901 GGAAUCU-GC G-GG(GACCA U)CC-CGU-A AGGCUAA--- -AUACUCCCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-UA GUUCCUGAAA CCACgACGCC UACAA-G-AA GUCAGAGCCC --G------- 1081 --------(- ---uuaa--) ---------- -----U-GGG UGAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GGUA- UCGUGC-GAG GUUAaggug( -gaaa-)gac 1201 c-GGAGCCGC AGC(GAAA-) GCGAGUGU(G AA-UA)GCGC GA-------- ---------- 1261 ---------- -----au--a g-UACGAUGC UGUA-GACCC GAAAC-CAA- GUGA-CCUAC 1321 CCAUGGU|CA GGAUGAAGGU GAGG(UAAA) AC-UUACUGG AGGUCCGAAC C-GGUGCAU( 1381 -GUUAAAAA) AUGCU|CGG- AUGAA-CUGU GGGUAGCGGU (-GAAAU)UC CAAACGAACU 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCG UAau---ga| 1501 -gga|UACUG G|AGGUAG|A GC-UCUGU-U UGGACUA-GG |-GGCCC(gu caa)GGGUUA 1561 CUGAAUUCAG -AUAAACUCC GAA-UU-|CC A-GAU-A--- ucca----u| aca-cgggAG 1621 UCAGAC--UG C-GAGU(GAU AAG)AUCCGC -AGUC-GAAA GGG(-AAACA G-)CCCAGAU 1681 CACCAGUUAA G-GU|CCCA- AAAUA-UAUG -C-UAA-GUG ------GAAA AGGAUGUG-G 1741 AGUUGCGCA- GACAACUAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (CAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUA GU-----CGA GU-GAC-GC- -UGC|GCCGA AAAU-UUAC- 1861 CGGGGCU-AA GCAUA-U|U| ACCGAAACU| GUGG|gugcg c------(gu aa-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ---gcacgc- GA-UAGGAGA G|-----CGU 2221 U-GUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --c-GCGA-U 2341 GAAGGGA-G- A-UC(-GUAA -)GGA--CUG CUGG|AGCGC U-UACAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGA-AA GACAGG(UGA GAAU)CCUGU C|CACC-GAA UGACUAAGGU 2461 UUCCUG-GGG AAGG-(CUCG U)CC|A-CCC AGGGUUAGU| CGG|G-ACCU AAGGCGAGGC 2521 U(GAGA)-A- GCGU-AGUCG ACGG-AUAAC AGG-(UU-GA GAUU)C-CUG U|AC|ca-g- 2581 uuguaa-ugc --guu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 --auuaccga u------gga g--gga-cgc aggaggcua- ccag-au|cc g-cac(uga- 2761 -uggau-au- --)gu-gcgu -|gcaa---- ---------- ---gcag-ua aguc------ 2821 -uugaaa-ag a-gu(ga-aa -u-)gc|u-- uuuuucuaua ---------a ggac-aagcu 2881 gug-augc|g ga-|------ -------ucg a(aauaaag) -uaga----- ------gaag 2941 --ucugc-ga uguc-aca-| cugccgagaa a-agcuuc-u a-ggaa---- ------gu-a 3001 -uuaca--cu g|c|CCGUAC CGCAAACC(G ACACA)GG|U AG-UCGAGU- G-(GAGAA)C 3061 ACUAAGGUGA ||GCGAGAGA ACCCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |ccucaug-- ---------- ---------- 3181 -(-guaaa)a ---------- ---------- -caugag-C| C(GCA)GUGA AUAGGCC-CA 3241 GG|CGACU-- ---GU(UUAU CAAAA)ACAC AGGUUUCUG| CAAAAUC(GU AA------)G 3301 AUGAAGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAAA GGAGUGCUUA 3361 GC-------- (U-UCG)--- --------GC GA-AGGUACG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGUAAC GA-UCUGGGC ACUGUCUCAA CGAGGGACUC 3541 G|GUGAAAUU |UAAAUAC-C CG(UGAAGAU G)CGGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCAUGG|A GCU-UUACUG U|AGCUUGAU AUU|GAAUGU UUGUGCUGCU UGUACAGAAU 3661 AGGUAGGAGA CGAAGAAA-- UUUGGAC(GC CA)GUCUAGA CGGAGUCGAA -AUGUGGGAU 3721 ACUACC|CUC G-UUGUAUGA ACA-UUCUAA -CACUGG--- -UCGC(--uu -auc)-GCGA 3781 UCGUG-GACA GUGUCUGGCG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAGG 3841 UAAC)GGAGG C|G|C|UCAA AGGUUUGC|U CAGAAUGG(U UGGAAA)UCA UUCGUA-GC| 3901 GU(G|UAAAG )GCAUAAGCA AGCUUGACUG CGAGAG(UUA CAA)CUCGAG CAGGUAC(GA 3961 AA)GU-AGGA |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|UGGG|G AUAACAG|GC ACA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC C-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-CAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACA UACCGCUGGU GUACCAGU|U GUUCC(GC-C A-)GGAGCA- UUGCUGGGUA 4381 GCU-AUGUAU GGAUGAGAUA AACGCU(GAA AGCAUCUA)A GUGUGAAACU CGCCUC|GAG 4441 AUGAGAUUUC C|CA|UCUAU -(-uua--)- AUAGA--GU- AAGA|-CC|C CUUA-(GAGA 4501 UG-A)UGAGG -UAGAUAG|G CUAG|AAGUG -GAAGUUGA- -(GUGA-)-- UCAAU|GG-A 4561 GCGG|A|CUA GUACUAAUA- GGUCGA-GG| ACUUAA-CCA A-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS L.carnosum 4759 bp RNA RNA 11-JAN-191 DEFINITION Leuconostoc carnosum. ACCESSION No information KEYWORDS No information. SOURCE Leuconostoc carnosum. ORGANISM Leuconostoc carnosum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: S60371 LOCUS S60371 2866 bp DNA BCT 16-JUL-1993 DEFINITION 23S rRNA [Leuconostoc carnosum, Genomic, 2866 nt] ACCESSION S60371 KEYWORDS . SOURCE Leuconostoc carnosum ORGANISM Leuconostoc carnosum Unclassified. REFERENCE 1 (bases 1 to 2866) AUTHORS Martinez-Murcia,A.J., Harland,N.M. and Collins,M.D. TITLE Phylogenetic analysis of some leuconostocs and related organisms as determined from large-subunit rRNA gene sequences: assessment of congruence of small- and large-subunit rRNA derived trees. JOURNAL J. Appl. Bacteriol. 74, 532-541 (1993) STANDARD full automatic COMMENT This entry [NCBI gibbsq 132130] was created by the journal scanning component of NCBI/GenBank at the National Library of Medicine. This sequence comes from Fig. 1. FEATURES Location/Qualifiers rRNA 1..2866 /note="Description: 23S rRNA" source 1..2866 /organism="Leuconostoc carnosum" BASE COUNT 820 a 564 c 833 g 612 t 37 others ORIGIN BASE COUNT 820 a 564 c 833 g 612 t 1930 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------nn nnnnnnnnn- --nnnnnnnn nnnnnnnnnn 121 n|nnnnnn|n nnnnnn|nn| nn-nnNNNNN NN|NNNN(NN NN-NN-)N|- ACG-AUAAGC 181 UUUGGU|-GA GCG(G-UA-A GUA-)CGCUA UG-ACC-CAG AGAUU|UCCG AAUGGG(GAA 241 A)CCC|AACU C---(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---gcaaa)- --GAGUU-GU CC-AUAUCU( 481 GA-AUAUA-- UA)GGA-UAU -GAG--ACG- GAAUAC|GC- UGUGAACU|G A(AACA)UCU 541 CAUUA-GCAG CAGGAGCAGA AAGN(-NANA --)UCGAU|U CC-CUANGUA GC(GGCGA)G 601 CGA-ACG-GG GA-AGA-GCC CAAAccagag -ug------- -----(cuug -)-------- 661 ----cauucu gggguuguag gacugauau- ---------- ---------- ---------- 721 ----auaaga guuacaaaag uguuuuau-a gcaGAAc-aa g-u(u-ggga a)g-cuuggc 781 |u(aua)gaG GG(UGAUAGC )CCCGU-Aag c-gaaauaaa gcacacucuu ---------- 841 ---------- ----uucagg auccu---GA GUACGGCCGG A(CACGUG-A AA)UCCGGUC 901 GGAAUCU-GC G-GG(GACCA U)CC-CGU-A AGGCUAA--- -AUACUCCCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CANNCC(GG- AA-)NGGGA- 1021 -GUGAAA-UA GUUCCUGAAA CCACgACGCC UACAA-G-AA GUCAGAGCCC --G------- 1081 --------(- ---uuaa--) ---------- -----U-GGG UGAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUA- UCGUGC-AAG GUUAAGGAg( -aaaa-)gAC 1201 C-GGAGCCGU AGC(GAAA-) GCGAGUGU(G AA-UA)GCGC GA-------- ---------- 1261 ---------- -----au--a G-UACGAUGU UGUA-GACCC GAAAC-CAG- GUGA-CCUAC 1321 CCAUGGU|CA GGAUGAAGGU GAGG(UAAA) AC-UUACUGG AGGUCCGAAC C-GGUGCAU( 1381 -GUUAAAAA) AUGCU|CGG- AUGAA-CUGU GGGUAGCGGU (-GAAAU)UC CAAACGAACU 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUANCU (-UUAG)GGC UAGC|-CUCA UUau---aa| 1501 -gca|UACUG G|AGGUAG|A GC-ACUGU-U AAGCCUA-GG |-GGCCC(au cuc)GGGUUA 1561 CCAAAGUUUG -AUAAACUCC GAA-UG-|CC A-GAU-A--- ugua----u| gaa-ugggAG 1621 UCAGAC--GA U-GAGU(GAU AAG)AUCCAC -CGUC-GAAA GGG(-GAACA G-)CCCAGAU 1681 CGCCAGUUAA G-GU|CCCU- AAAUA-UAUG -U-UAA-GUG ------GAAA ACGAUGUG-A 1741 UAGUGCAUA- GACAACUAGG AUGUUGGC(U UAGAAGCA)G CCAN-CAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUA GU-----CGA GU-GCC-AU- -UGC|GCGGA AAAU-GUAC- 1861 CGGGGCU-AA ACAUA-U|U| ACCGAAACU| GCGG|gugug c------(gu aa-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ---gcacgc- GA-UAGGAGA G|-----CGU 2221 U-GUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCAA-U 2341 GAAGGUA-G- A-CU(-GUAA -)GGA--CUA CUGG|AGCGC U-UACAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGA-AA GACAGG(UGA GAAU)CCUGU C|CACC-GAA UGACUAAGGU 2461 UUCCUG-GGG AAGG-(CUCG U)CC|U-CCC AGGGUUAGU| CGG|G-ACCU AAGGCGAGGC 2521 U(GAGA)-A- GCGU-AGUCG AUGG-AUAAC AGG-(UU-GA GAUU)C-CUG U|AC|ca-g- 2581 uaguaa-ugc --guu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---ugaccga u------gga g--gga-cgc aggaggcua- ucag-aa|gc g-uac(uga- 2761 -uggau-au- --)gu-acgu -|gcaa---- ---------- ---gcag-ua aguu------ 2821 -uugaua-ag a-gu(ga-aa -u-)gc|u-- uuuaucuaca ---------a gaac-aagcu 2881 gug-augc|g ga-|------ -------ucg a(aauaaag) -uaga----- ------gaag 2941 --ucuga-ga uguc-aca-| cugccgagaa a-agcuuc-u a-ggaa---- ------gu-a 3001 -uuaca--cu g|c|CCGUAC CGCAAACC(G ACACA)GG|U AG-UCGAGU- G-(GAGAA)C 3061 ACUAAGGUGA ||GCGAGAGA ACCNUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |gcucaug-- ---------- ---------- 3181 g(-uaaa-)a ---------- ---------- -caugag-C| C(GCA)GUGA AUAGGCC-CA 3241 GG|CGACU-- ---GU(UUAU CAAAA)ACAC AGGUUUCUG| CAAAAUC(GU AA------)G 3301 AUGAAGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAAA GGAGUGCUUA 3361 GC-------- (U-UCG)--- --------GC GA-AGGUACG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGUAAC GA-UCUGGGC ACUGUCUCAA CGAGGGACUC 3541 G|GUGAAAUU |UAAAUAC-C CG(UGAAGAU G)CGGGUNAC CCGNGAC-AG GACGGAAAGA 3601 CCCCAUGG|A GCU-UUACUG U|AGCUUGAU AUU|GAAUGU UUGUGCUGCU UGUACAGAAU 3661 AGGUAGGAGA CGUAGAAA-- AUUGGAC(GC CA)GUCUAGU UGGAGUCGaa cg-GUGGGAU 3721 ACUACC|CUC G-UUGUAUGA ACA-UUCUAA -CACUGG--- -UCAC(--UU -AAC)-GUGA 3781 UCGUG-GACA GUGUCUGGCG GG-CAGNUUG ACUG(GGN)C GGUC|GCCUC C(UAA-AAGG 3841 UAAC)GGAGG C|G|C|UCAA AGGUUUGC|U CAGAAUGG(U UGGAAA)UCA UUCGUA-GC| 3901 GU(G|UAAAG )GCAUAAGCA AGCUUGACUG UGAGAG(CUA CAA)CUCGAG CAGGUAC(GA 3961 AA)GU-AGGA |CUUAGUGAU CCGGUGGUUC CG(NAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|UGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUN C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-UAG 4261 GAAAUUU|GA -|GAGGAGU- UGC------- -------CCU (UAGUNC(GA GA)GGACC)G 4321 GGGUGA|ACA AACCGCUGGU GUACCAGU|U GUUCC(GC-C A-)GGAGCA- UNNCUGGGUA 4381 GCU-AUGUGU GGAUGAGAUA AACGCU(GAA AGCAUCUA)A GUGUGAAACU CGCCUC|GAG 4441 AUGAGAUUUC C|CA|UCUA- -(-uuua-)- -UAGA--GU- AAGA|-CC|C CUUA-(GAGA 4501 UG-A)UGAGG -UAGAUAG|G CUAG|AAGUG -GACGUACA- -(GUGA-)-- UGUAU|GA-A 4561 GCGG|A|CUA GUACUAAUC- GGUCGA-GG| ACUUAA-CCA A-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS Leu.lactis 4759 bp RNA RNA 08-JAN-1997 DEFINITION Leuconostoc lactis.; 23S ribosomal RNA; 23S rRNA gene. ACCESSION Z75491 KEYWORDS 23S ribosomal RNA; 23S rRNA gene. SOURCE Leuconostoc lactis. ORGANISM Leuconostoc lactis. REFERENCE 1 (bases 1 to 2916) AUTHORS Nour,M. and Branlant,C. TITLE A comparative analysis of 23S ribosomal RNA and intergenic spacers in Leuconostoc: primary and secondary structure JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 2916) AUTHORS Nour,M. TITLE Direct Submission JOURNAL Submitted (20-JUN-1996) M. Nour, Laboratoire d'Enzymologie et de Genie, Genetique URA CNRS, 457 Bld des Aiguillettes, BP 239 Faculte des Sciences, 54506 Vandoeuvere-Les-Nancy CEDEX, FRANCE STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: Z75491 BASE COUNT 834 a 594 c 869 g 619 t 1843 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGUUAA- --UAAGGGCG CGUGGUGGAU 121 G|CCUUGG|C ACUAGG|AG| CC-GAUGAAG GA|CGUG(AC UA-AA-)C|- ACG-AUAAGC 181 UUUGGU|-GA GCG(G-UA-A GUA-)CGCUA UG-ACC-CAG AGAUU|UCCG AAUGGG(GAA 241 A)CCC|AACU C---(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---gaaga)- --GAGUU-GU CA-UUAUCU( 481 GA-AUACA-- UA)GGA-UAU -AUG--ACG- GAACAC|GC- UGUGAACU|G A(AACA)UCU 541 CAUUA-GCAG CAGGAGAAGA AAGA(-AAAA --)UCGAU|U CC-CUAAGUA GC(GGCGA)G 601 CGA-ACG-GG GA-AGA-GCC CAAACCAACG -UG------- -----(cuug -)-------- 661 ----CAUGUU GGgguuguag gacugauau- ---------- ---------- ---------- 721 ----auaaga guuacaaaag uguuuuau-a gcaGAAc-aa g-u(u-ggga a)a-cuugGC 781 |U(AUA)GAG GG(UGAUAGC )CCCGU-AAG C-gaaaugaa gcacacucuu ---------- 841 ---------- ----uucagg auccu---GA GUACGGCCGG A(CACGUG-A AA)UCCGGUC 901 GGAAUCU-GC G-GG(GACCA U)CC-CGU-A AGGCUAA--- -AUACUCCCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-UA GUUCCUGAAA CCACgACGCC UACAA-G-AA GUCAGAGCCC --G------- 1081 --------(- ---uuaa--) ---------- -----U-GGG UGAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GGUA- UCGUGC-GAG GUUAaggug( -gaaa-)gac 1201 c-GGAGCCGC AGC(GAAA-) GCGAGUGU(G AA-UA)GCGC GA-------- ---------- 1261 ---------- -----au--a g-UACGAUGC UGUA-GACCC GAAAC-CAA- GUGA-CCUAC 1321 CCAUGGU|CA GGAUGAAGGU GAGG(UAAA) AC-UUACUGG AGGUCCGAAC C-GGUGCAU( 1381 -GUUAAAAA) AUGCU|CGG- AUGAA-CUGU GGGUAGCGGU (-GAAAU)UC CAAACGAACU 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCG UAau---ga| 1501 -gga|UACUG G|AGGUAG|A GC-UCUGU-U UGGACUA-GG |-GGCCC(gu caa)GGGUUA 1561 CUGAAUUCAG -AUAAACUCC GAA-UU-|CC A-GAU-A--- ucca----u| aca-cgggAG 1621 UCAGAC--UG C-GAGU(GAU AAG)AUCCGC -AGUC-GAAA GGG(-AAACA G-)CCCAGAU 1681 CACCAGUUAA G-GU|CCCA- AAAUA-UAUG -C-UAA-GUG ------GAAA AGGAUGUG-G 1741 AGUUGCGCA- GACAACUAGG AUGUUGGC(U UAGAAGCA)G CCAU-CAU|U (CAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUA GU-----CGA GU-GAC-GC- -UGC|GCCGA AAAU-UUAC- 1861 CGGGGCU-AA GCAUA-U|U| ACCGAAACU| GUGG|gugcg c------(gu aa-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ---gcacgc- GA-UAGGAGA G|-----CGU 2221 U-GUA-AG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --c-GCGA-U 2341 GAAGGGA-G- A-UC(-GUAA -)GGA--CUG CUGG|AGCGC U-UACAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGA-AA GACAGG(UGA GAAU)CCUGU C|CACC-GAA UGACUAAGGU 2461 UUCCUG-GGG AAGG-(CUCG U)CC|A-CCC AGGGUUAGU| CGG|G-ACCU AAGGCGAGGC 2521 U(GAGA)-A- GCGU-AGUCG ACGG-AUAAC AGG-(UU-GA GAUU)C-CUG U|AC|ca-g- 2581 uuguaa-ugc --guu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 --auuaccga u------gga g--gga-cgc aggaggcua- ccag-au|cc g-cac(uga- 2761 -uggau-au- --)gu-gcgu -|gcaa---- ---------- ---gcag-ua aguc------ 2821 -uugaaa-ag a-gu(ga-aa -u-)gc|u-- uuuuucuaua ---------a ggac-aagcu 2881 gug-augc|g ga-|------ -------ucg a(aauaaag) -uaga----- ------gaag 2941 --ucugc-ga uguc-aca-| cugccgagaa a-agcuuc-u a-ggaa---- ------gu-a 3001 -uuaca--cu g|c|CCGUAC CGCAAACC(G ACACA)GG|U AG-UCGAGU- G-(GAGAA)C 3061 ACUAAGGUGA ||GCGAGAGA ACCCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |gcucaug-- ---------- ---------- 3181 -(-gcaa-)- ---------- ---------- -caugaggC| C(GCA)GUGA AUAGGCC-CA 3241 GG|CGACU-- ---GU(UUAU CAAAA)ACAC AGGUUUCUG| CAAAAUC(GU AA------)G 3301 AUGAAGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAAA GGAGUGCUUA 3361 GC-------- (U-UCG)--- --------GC GA-AGGUACG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGUAAC GA-UCUGGGC ACUGUCUCAA CGAGGGACUC 3541 G|GUGAAAUU |UAAAUAC-C CG(UGAAGAU G)CGGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCAUGG|A GCU-UUACUG U|AGCUUGAU AUU|GAAUGU UUGUGCUGCU UGUACAGAAU 3661 AGGUAGGAGA CGAAGAAA-- UUUGGAC(GC CA)GUCUAGA CGGAGUCGAA -AUGUGGGAU 3721 ACUACC|CUC G-UUGUAUGA ACA-UUCUAA -CACUGG--- -UCGC(--uu -auc)-GCGA 3781 UCGUG-GACA GUGUCUGGCG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAGG 3841 UAAC)GGAGG C|G|C|UCAA AGGUUUGC|U CAGAAUGG(U UGGAAA)UCA UUCGUA-GC| 3901 GU(G|UAAAG )GCAUAAGCA AGCUUGACUG CGAGAG(UUA CAA)CUCGAG CAGGUAC(GA 3961 AA)GU-AGGA |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|UGGG|G AUAACAG|GC ACA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC C-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-CAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACA UACCGCUGGU GUACCAGU|U GUUCC(GC-C A-)GGAGCA- UUGCUGGGUA 4381 GCU-AUGUAU GGAUGAGAUA AACGCU(GAA AGCAUCUA)A GUGUGAAACU CGCCUC|GAG 4441 AUGAGAUUUC C|CA|UCUAU -(-uua--)- AUAGA--GU- AAGA|-CC|C CUUA-(GAGA 4501 UG-A)UGAGG -UAGAUAG|G CUAG|AAGUG -GAAGUUGA- -(GUGA-)-- UCAAU|GG-A 4561 GCGG|A|CUA GUACUAAUA- GGUCGA-GG| ACUUAA-CCA A-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS L.delbruec 4759 bp RNA RNA 11-JAN-191 DEFINITION Lactobacillus delbrueckii. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus delbrueckii. ORGANISM Lactobacillus delbrueckii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X68426 ID LD23SRRN standard; DNA; PRO; 2909 BP. XX AC X68426; XX DT 29-MAR-1993 (Rel. 35, Created) DT 29-MAR-1993 (Rel. 35, Last updated, Version 2) XX DE L.delbrueckii gene for 23S rRNA XX KW 23S ribosomal RNA. XX OS Lactobacillus delbrueckii OC Prokaryota; Bacteria; Firmicutes; Regular asporogenous rods; OC Lactobacillaceae. XX RN [1] RP 1-2909 RA Ludwig W.; RT ; RL Submitted (08-SEP-1992) on tape to the EMBL Data Library by: RL W. Ludwig, Lehrst. fuer Mikrobiologie TU Muenchen, Arcisstr. 21, RL 8000 Muenchen 2, FRG XX RN [2] RP 1-2909 RA Ludwig W., Kirchof G., Klugbauer N., Weizenegger M., Betzl D., RA Ehrmann M., Hertel C., Jilg S., Tatzel R., Zitzelsberger H., RA Liebl S., Hochberger M., Shah J., Lane D., Wallnoef P.R.; RT "Complete 23S ribosomal RNA sequences of Gram-positive Bacteria RT with a low DNA G+C content"; RL Syst. Appl. Microbiol. 15:487-501(1992). XX CC *source: strain=11Lb1; XX FH Key Location/Qualifiers FH FT rRNA 1..2909 FT /product="23S ribosomal RNA" XX SQ Sequence 2909 BP; 810 A; 629 C; 908 G; 562 T; 0 other; BASE COUNT 810 a 629 c 908 g 562 t 1850 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UCAAGUGAA- --GAAGGGCG CACGGUGAAU 121 G|CCUUGG|C ACUGGA|AG| CC-GAUGAAG GA|CGCG(AC UA-AC-)C|- GCG-AAAGUC 181 UUCGGG|-GA GCC(G-UA-A GUA-)GGCUU UG-AUC-CGG AGGUC|UCCG AAUGGG(GGA 241 A)CCC|AGCA UGU-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----gcag)- ACAUGCU-AU CC-UUAAGU( 481 GA-AUACA-- UA)GCU-UAA -G-G--AGG- GAACAC|GC- AGUGAACU|G A(AACA)UCU 541 AAGUA-GCUG CAGGAAGAGA AAGA(-AAUA --)UCGAU|U UC-CCAAGUA GC(GGCGA)G 601 CGA-A-CAGG AA-AGA-GCC CAAAccguca -ga------- -----(uuua -)-------- 661 ----ucugcc gggguuguag gacugagaca ---------- ---------- ---------- 721 ---------- --uggcacuu cagaggau-a gcaGAAg-cg u-u(u-ggga a)a-gcgcgc 781 |c(aga)gaG GG(UGAGAGC )CCCGU-Aag c-gaaaucca aagaaggccu ---------- 841 ---------- ----aucagu auccu---GA GUAGGGCGGG A(CACGUG-A AA)UCCCGUU 901 UGAAUCC-GC G-AG(GACCA U)CU-CGC-A AGGCUAA--- -AUACUAACC AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G AACCCC(GG- GA-)GGGGA- 1021 -GUGAAA-GA GAACCUGAAA CCGU-GUGCC UACAA-G-UA GUCAGAGCCC --G------- 1081 --------(- ---uuaa--) ---------- -----C-GGG UAAUGGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUGC-GUUA- GUCAGC-AAG GUUAAGUca( -gaaa-)agA 1201 C-GGAGCCGU AGC(GAAA-) GCGAGUCU(G AA-UA)GGGC GA-------- ---------- 1261 ---------- ------g-ca G-UUGCGUGA CGCA-GACCC GAAAC-CAA- GUGA-CCUAC 1321 CCAUGAC|CA GGUUGAAGGC GCGG(UAAA) AC-GCGCUGG AGGACCGAAC C-CACGUAA( 1381 -GUUGAAAA) UUGCG|GGG- AUGAG-UUGU GGGUAGCGGU (-GAAAU)UC CAAACGAACU 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-CUCG CAaa---ga| 1501 -gga|UGCUG G|AGGUAG|A GC-UCUGU-U UGGACUA-GG |-GGCCC(gu caa)GGGUUA 1561 CUGAAUUCAG -AUAAACUGC GAA-UU-|CC A-Gac-a--- uuua----u| gug-cgggAG 1621 UCAGAC--UG C-GAGU(GAU AAG)AUCCGU -AGUC-GAAA GGG(-AAACA G-)CCCAGAU 1681 CACCAGUUAA G-GU|CCCA- AAAUU-CAUG -C-UAA-GUG ------GAAA AGGAUGUG-G 1741 AGUUGCGCA- GACAACUAGG ACGUUGGC(U CAGAAGCA)G CCAU-CAU|U (CAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUA GU-----CGA GU-GAC-GC- -CGC|GCCGA AAAU-UUAC- 1861 CGGGGCU-AA GCAUG-A|U| ACCGAAACU| GUGG|augug ca-----(uu ua-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --ugcacgu- GG-UAGGAGA G|-----CGU 2221 U-CUA-GC-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GCGG-U 2341 GAAGCAU-G- A-CC(-GAGA -)GGA--CAU GUGG|AGCUU C-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--ACGA-AA GACAGG(UGA GAAU)CCUGU C|CGCC-GCA AGACUAAGGU 2461 UUCCUG-GGG CAGG-(CUCG U)CC|G-CCC AGGGUAAGU| CGG|G-ACCU AAGGCGAGGC 2521 C(GAGA)-G- GCGU-AGUCG AUGG-ACAAC AGG-(UU-GA AAUU)C-CUG U|AC|ug-c- 2581 ac-cga-auc --guu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 --augagcga u------gga g--gga-cgc aggaggcua- gcau-gc|gc g-ugg(ugc- 2761 -uggau-a-- --)cc-acgu -|ucaa---- ---------- ---gcgu-ca aguc------ 2821 --ugaga-gc gagu(ca-aa -u-)gc|u-u gcucucauaa ---------- ggac-aaggc 2881 gug-auga|g ga-|------ -------gcg a(aauuaaa) guagc----- ------gaag 2941 --gcugc-ga cguc-aca-| cugccgagaa a-agcuuc-u a-gcca---- ------ga-g 3001 -acggu--gc a|c|CCGUAC CGCAAACC(G ACACA)GG|U AG-UCGAGG- A-(GAGUA)U 3061 CCUCAGGUGA ||GCGAGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGGCCCCGUA AC(-UUCG)G GAGAAGGGGC |gcugguc-- ---------- ---------- 3181 -(-gcaa-)- ---------- ---------- -gaucag-C| C(GCA)GUGA AAAGGCC-CA 3241 AG|CAACU-- ---GU(UUAU CAAAA)ACAC AGGCAUCUG| CAAAAUC(GU AA------)G 3301 AUGAAGU-AU AGGUGCUGA- CACCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGAGCUUA 3361 GC-------- (G-CAA)--- --------GC GA-AGGUUUG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CUGCACGA AAGGUGUAAU GA-UUUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUU |AUAAUAC-C CG(UGAAGAU G)CGGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCAUGG|A GCU-UUACUG C|AGUUUAAU AUU|GGGUAU CUGUCAAGCA UGUACAGGAU 3661 AGGUAGGAGC CGGAGAAG-- AUAGGAC(GC CA)GUCUUAU CUGAGGCGCU -G-UUGGGAU 3721 ACUACC|CUU G-CUUGACGG AUG-CUCUAA -CUCAGG--- -CCUG(--UG -AUC)-CAGG 3781 CCGAG-GACA GUGUUUGACG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AGUG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(U UGGAAA)UCA UUCGCA-GA| 3901 GU(G|UAAAG )GUAAAAGGG AGCUUGACUG CGAGAG(AGA CAA)CUCGAG CAGGUAC(GA 3961 AA)GU-AGGG |CUUAGUGAU CUGGUGGUAC CG(CAUGGA) AGG|GCCAUC ACUCAAC|GG 4021 AUAAAAGCUA CCC|UGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UUC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GAAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGCAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGUG G-G|CG-CAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACG CACCGCUGGU GUACCAGU|U GUCUU(GC-C A-)AAGGCA- UCGCUGGGUA 4381 GCU-AUGUGC GGACGGGAUA AGCGCU(GAA AGCAUCUA)A GUGCGAAGCC CCCCUC|AAG 4441 AUGAGAUUUC C|CA|UUUCU -(-uca--)- AGAAA--GU- AAGA|-CA|C CUCA-(GAGA 4501 CG-A)UGAGG -UAGAUAG|G CCGG|GAGUG -GAAGAGCC- -(GUGA-)-- GGCUU|GG-A 4561 GCGG|A|CCG GUACUAAUC- AGUCGA-GG| ACUUGA-CCA A-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS L.lactis.1 4759 bp RNA RNA 11-JAN-191 DEFINITION Lactococcus lactis. ACCESSION No information KEYWORDS No information. SOURCE Lactococcus lactis. ORGANISM Lactococcus lactis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X64887 LOCUS LACRRNAOP 5953 bp ds-DNA BCT 10-APR-1992 DEFINITION L.lactis ribosomal RNA operon encoding 16S, 5S, and 23S ribosomal RNA, transfer RNA-Ala and transfer RNA-Asn ACCESSION X64887 KEYWORDS 16S ribosomal RNA; 23S ribosomal RNA; 5S ribosomal RNA; ribosomal RNA; ribosomal RNA operon; transfer RNA-ala; transfer rna; transfer rna-asn. SOURCE Lactococcus lactis DNA. ORGANISM Lactococcus lactis Prokaryota; Bacteria; Firmicutes; Regular asporogenous rods; Lactobacillaceae. REFERENCE 1 (bases 1 to 5953) AUTHORS Chiaruttini,C. and Milet,M. TITLE Gene organization, primary structure and RNA processing analysis of a ribsomal RNA operon in lactococcus lactis JOURNAL Unpublished (1992) STANDARD full automatic COMMENT *source: strain=ssp. IL 1403; From EMBL entry LLRRNAOP; dated 26-MAR-1992. FEATURES Location/Qualifiers promoter 324..329 -10_signal 347..352 prim_transcript 358..>5646 rRNA 508..2055 /product="16S ribosomal RNA" tRNA 2149..2221 /product="transfer RNA-Ala" rRNA 2360..5257 /product="23S ribosomal RNA" rRNA 5341..5451 /product="5S ribosomal RNA" tRNA 5573..5646 /product="transfer RNA-Asn" BASE COUNT 1771 a 1138 c 1632 g 1412 t ORIGIN BASE COUNT 843 a 585 c 862 g 648 t 1821 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG CAAAGUUAA- --UAAGGGCG CACGGUGGAU 121 G|CCUUGG|C ACUAAG|AG| CC-GAUGAAG GA|CGUG(AC UA-AC-)G|- ACG-AUAUUC 181 UAGGGG|-GA GCA(G-UA-A GUA-)CGCAU UG-AUC-CCU AGGUC|UCCG AAUGGG(AAA 241 A)CCC|AGCU GCU-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- -----acu)- AGCAGUU-AU UC-AUGAGU( 481 GA-AUACA-- UA)GCU-CAU -GUA--AAG- GUA-AC|GC- AGAGAACU|G A(AACA)UCU 541 AAGUA-CCUG CAGGAAGAGA AAGU(-AAAA --)ACGAU|U UC-GUAAGUA GC(GGCGA)G 601 CGA-ACG-CG AA-GAA-GGG CAAAccaaga -ag------- -----(cuug -)-------- 661 ----cuucuu gggguuguag gacugca--- ---------- ---------- ---------- 721 ---------- acguggacuu aagcauuaua gucGAAu-aa c-c(u-ggga a)g-guuaau 781 |c(aaa)gaG GG(UAAUAAU )CCCGU-Aga c-gaaauagc gcuuauaccu ---------- 841 ---------- ----agcagu auccu---GA GUAGGGCUGG A(CACGCG-A AA)UCCAGUU 901 UGAAUCC-GG G-AG(GACCA U)CU-CCC-A ACCCUAA--- -AUACUCCUU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G AA-CCC(GA- GA-)GGGGA- 1021 -GUGAAA-UA GCACCUGAAA CCGU-GUGCC UACAA-G-AA GUUCGAGCCC --G------- 1081 --------(- ---uuaa--) ---------- -----U-GGG UGAGAGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GUUA- UGAUGC-GAG GUUAAGUu-( -gaaga)-gA 1201 C-GGAGCCGU AGG(GAAA-) CCGAGUCU(G AA-UA)GGGC GA-------- ---------- 1261 ---------- -----cu-ua G-UAUCAUGA UGUA-GACCC GAAAC-CUA- GUGA-CCUAU 1321 CCAUGAG|CA GGGUGAAGGU GUGG(UAAG) AC-GCACUGG AGGCCCGAAC C-AGGACAC( 1381 -GUUGAAAA) GUGUU|UGG- AUGAC-UUGU GGAUAGCGGA (-GAAAU)UC CAAACGAACU 1441 GGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-GUCG AAAugu-aa| 1501 -gug|UAUUG G|AGGUAG|A GC-ACUGU-U UGGGUGA-GG |-GGUCC(gu cua)GGAUUA 1561 CCAAUCUCAG -AUAAACUCC GAA-UG-|CU A-A-U-A--- CACa----u| GUU-CGGCAG 1621 UCAGAC--UG C-GAGU(GCU AAG)AUCCGU -AGUC-GAAA GGG(-AAACA G-)CCCAGAC 1681 CAACAGCUAA G-GU|CCCA- AAAUA-UAUG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 GGUUGCACA- GACAACUAGG AUGUUAGC(U CAGAAGCA)G CUAU-CAU|U (CAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUA GU-----CGA GU-GAC-CC- -UGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACAUA-U|U| ACCGAAGCU| UUGG|auuga ua-----(uu u--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --uaucaau- GG-UAGGAGA G|-----CGU 2221 U-CUU-AAc- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --C-GCGA-U 2341 GAAGGUA-U- A-CC(-GUGA -)GGA--GUG CUGG|AGCGU U-AAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGC-AA GAUAAG(UGA GAAU)CUUAU C|CACC-GUA AGACUAAGGU 2461 UUCCAG-GGG AAGG-(CUCG U)CC|G-CCC UGGGUUAGU| CGG|G-ACCU AAGGCGAGGC 2521 C(GAAA)-G- GCGU-AGUCG AUGG-ACAAC UGG-(UU-GA UAUU)C-CAG U|AC|ua-g- 2581 au-aug-auc ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------guga u------gga g--gga-cgc aguaggcua- agag-au|gc c-agu(uaa- 2761 -uggau---- --)uc-uggu -|cuaa---- ---------- ---gcag-ug aggug----- 2821 --ugaga-ug u-gu(ca-aa -u-)gc|a-- uuucucuu-- -------uaa cauu-gagcu 2881 gug-augg|g ga-|------ -----agcaa c(-uacg--) guugc----- ------gaac 2941 --ucucu-ga uguc-aca-| cugccaagaa a-agcuuc-u a-gcgua--- ------aa-g 3001 ucauau--cu a|c|CCGUAC CGCAAACC(G ACACA)GG|U GG-UCGAGG- C-(GAGUA)G 3061 CCUCAGGUGA ||UCGAGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UAGCCCCGUA AC(-UUCG)G GAGAAGGGGU |GCUGGU--- ---------- ---------- 3181 g(-uaaa-)a ---------- ---------- --GCCAG-C| C(GCA)GUGA AUAGGCC-CA 3241 AG|CAACU-- ---GU(UUAU CAAAA)ACAC AGCUCUCUG| CUAAACC(GC AA------)G 3301 GUGAUGU-AU AGGGGGUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGUGCUUA 3361 GA-----c-- (G-UAA)g-- --------UC GA-AGGUAUG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGUAAU GA-UUUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUU |UUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCAUGG|A GCU-UUACUG U|AGUUUGAU AUU|GAGUAC CUGUAAGUCA UGUACAGGAU 3661 AGGUAGGAGC CAUUGAAA-- UAGGGAC(GC UA)GUUUCUA UUGAGGCGUU -G-UUGGGAU 3721 ACUACC|CUU G-ACUUAUGG UUA-CUCUAA -CCCgCU--- -GGCa(--UA -AUC)-gGCC 3781 AGGGA-GACA GUGUCUGACG GA-CAGUUUG ACUG(GGG)C GGUC|GC-UC C(UAA-AGAG 3841 UAAC)GGAGG C|G|C|UCAA AGGUUGGC|U CAGAUUGG(U UGGAAA)UCA AUCGUA-GA| 3901 GU(G|UAAAG )GUAAAAGCC AGCUUGACUG CGAGAG(CUA CAA)CUCGAG CAGGUAG(GA 3961 AA)CU-AGGA |CUUAGUGAU CCGGUGGUAC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|UGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UUC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-C-AUU AAAGCGGCAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GAcAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-UAG 4261 GUAAUUU|GA -|GAGGAUC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACU UACCGCUGGU GUACCAGU|U GUUCC(GC-C A-)GGAGCA- CGGCUGGAUA 4381 GCU-AUGUAG GGAAGGGAUA AGCGCU(GAA AGCAUCUA)A GUGCGAAGCC CACCUC|AAG 4441 AUGAGAUUAC C|CA|UUC-- -(-GUAA-)- --GAA--UU- AAGA|-GC|C CAGA-(GAGA 4501 UG-A)UCUGG -UAGAUAG|G CUGG|AAGUG -GAAGAGUU- -(GCGA-)-- GACUU|GG-A 4561 GCGG|A|CCA GUACUAAUC- GCUCGA-GG| ACUUUA-CCA Aa------|a gagucaaaua 4621 uaauaugcuu augguuuaaa aguuagaa~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS L.lactis.2 4759 bp RNA RNA 11-JAN-191 DEFINITION Lactococcus lactis. ACCESSION No information KEYWORDS No information. SOURCE Lactococcus lactis. ORGANISM Lactococcus lactis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X68434 ID LL23SRNA1 standard; DNA; PRO; 2901 BP. XX AC X68434; XX DT 29-MAR-1993 (Rel. 35, Created) DT 29-MAR-1993 (Rel. 35, Last updated, Version 2) XX DE L.lactis (DSM 20069) gene for 23S rRNA XX KW 23S ribosomal RNA. XX OS Lactococcus lactis OC Prokaryota; Bacteria; Firmicutes; Regular asporogenous rods; OC Lactobacillaceae. XX RN [1] RP 1-2901 RA Ludwig W.; RT ; RL Submitted (08-SEP-1992) on tape to the EMBL Data Library by: RL W. Ludwig, Lehrst. fuer Mikrobiologie TU Muenchen, Arcisstr. 21, RL 8000 Muenchen 2, FRG XX RN [3] RP 1-2901 RA Ludwig W., Kirchof G., Klugbauer N., Weizenegger M., Betzl D., RA Ehrmann M., Hertel C., Jilg S., Tatzel R., Zitzelsberger H., RA Liebl S., Hochberger M., Shah J., Lane D., Wallnoef P.R.; RT "Complete 23S ribosomal RNA sequences of Gram-positive Bacteria RT with a low DNA G+C content"; RL Syst. Appl. Microbiol. 15:487-501(1992). XX CC *source: strain=DSM 20069; XX FH Key Location/Qualifiers FH FT rRNA 1..2901 FT /gene="23S rRNA" FT /product="23S rRNA" XX SQ Sequence 2901 BP; 825 A; 587 C; 855 G; 634 T; 0 other; BASE COUNT 825 a 587 c 855 g 634 t 1858 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG CAAAGUUAA- --UAAGGGCG CACGGUGGAU 121 G|CCUUGG|C ACUAAG|AG| CC-GAUGAAG GA|CGUG(AC UA-AC-)G|- ACG-AUAUUC 181 UAGGGG|-GA GCA(G-UA-A GUA-)CGCAU UG-AUC-CCU AGGUC|UCCG AAUGGG(GAA 241 A)CCC|AGCU GC--(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uacua)- -GCAGUU-AU UC-AUGAGU( 481 GA-AUACA-- UA)GCU-CAU -GUA--AAG- GUA-AC|GC- AGAGAACU|G A(AACA)UCU 541 AAGUA-CCUG CAGGAAGAGA AAGU(-AAAA --)ACGAU|U UC-GUAAGUA GC(GGCGA)G 601 CGA-ACG-CG AA-GAA-GGG CAAAccaaga -ag------- -----(cuug -)-------- 661 ----cuucuu gggguuguag gacugcaacg ---------- ---------- ---------- 721 ---------- --uggacuua agcauuau-a gucGAAu-aa c-c(u-ggga a)g-guuaau 781 |c(aaa)gaG GG(UAAUAAU )CCCGU-Aga c-gaaauagc gcuuauaccu ---------- 841 ---------- ----agcagu auccu---GA GUAGGGCUGG A(CACGCG-A AA)UCCAGUU 901 UGAAUCC-GG G-AG(GACCA U)CU-CCC-A ACCCUAA--- -AUACUCCUU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G AACCCC(GA- GA-)GGGGA- 1021 -GUGAAA-UA GCACCUGAAA CCGU-GUGCC UACAA-G-AA GUUCGAGCCC --G------- 1081 --------(- ---uuaa--) ---------- -----U-GGG UGAGAGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GUUA- UGAUGC-GAG GUUAAGUu-( -gaaga)-gA 1201 C-GGAGCCGU AGG(GAAA-) CCGAGUCU(G AA-UA)GGGC GA-------- ---------- 1261 ---------- -----cu-ua G-UAUCAUGA UGUA-GACCC GAAAC-CUA- GUGA-CCUAU 1321 CCAUGAG|CA GGGUGAAGGU GUGG(UAAG) AC-GCACUGG AGGCCCGAAC C-AGGACAC( 1381 -GUUGAAAA) GUGUU|UGG- AUGAC-UUGU GGAUAGCGGA (-GAAAU)UC CAAACGAACU 1441 GGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-GUCG AAaug-uaa| 1501 -gug|UAUUG G|AGGUAG|A GC-ACUGU-U UGGGUGA-GG |-GGUCC(gu cua)GGAUUA 1561 CCAAUCUCAG -AUAAACUCC GAA-UG-|CU A-A-U-A--- caca----u| guu-cggcAG 1621 UCAGAC--UG C-GAGU(GCU AAG)AUCCGU -AGUC-GAAA GGG(-AAACA G-)CCCAGAC 1681 CAACAGCUAA G-GU|CCCA- AAAUA-UAUG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 GGUUGCACA- GACAACUAGG AUGUUAGC(U CAGAAGCA)G CUAU-CAU|U (CAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUA GU-----CGA GU-GAC-CC- -UGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACAUA-U|U| ACCGAAGCU| UUGG|auuga ua-----(uu u--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --uaucaau- GG-UAGGAGA G|-----CGU 2221 U-CUU-AAc- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --C-GCGA-U 2341 GAAGGUA-U- A-CC(-GUGA -)GGA--GUG CUGG|AGCGU U-AAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGC-AA GAUAAG(UGA GAAU)CUUAU C|CACC-GUA AGACUAAGGU 2461 UUCCAG-GGG AAGG-(CUCG U)CC|G-CCC UGGGUUAGU| CGG|G-ACCU AAGGCGAGGC 2521 C(GAAA)-G- GCGU-AGUCG AUGG-ACAAC UGG-(UU-GA UAUU)C-CAG U|AC|ua-g- 2581 au-aug-auc ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------guga u------gga g--gga-cgc aguaggcua- agag-au|gc c-agu(uaa- 2761 -uggau---- --)uc-uggu -|cuaa---- ---------- ---gcag-ug aggug----- 2821 --ugaga-ug u-gu(ca-aa -u-)gc|a-- uuucucucua a--------- cauu-gagcu 2881 gug-augg|g ga-|------ -----agcaa c(-uacg--) guugc----- ------gaac 2941 --ucucu-ga uguc-aca-| cugccaagaa a-agcuuc-u a-gcguaa-- ------ag-u 3001 -cauau--cu a|c|CCGUAC CGCAAACC(G ACACA)GG|U AG-UCGAGG- C-(GAGUA)G 3061 CCUCAGGUGA ||UCGAGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UAGCCCCGUA AC(-UUCG)G GAGAAGGGGU |gcuggu--- ---------- ---------- 3181 g(-uaaa-)a ---------- ---------- --gccag-C| C(GCA)GUGA AUAGGCC-CA 3241 AG|CAACU-- ---GU(UUAU CAAAA)ACAC AGCUCUCUG| CUAAACC(GC AA------)G 3301 GUGAUGU-AU AGGGGGUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGUGCUUA 3361 GA-----c-- (G-UAA)g-- --------UC GA-AGGUAUG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGUAAU GA-UUUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUU |UUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCAUGG|A GCU-UUACUG U|AGUUUGAU AUU|GAGUAC CUGUAAGUCA UGUACAGGAU 3661 AGGUAGGAGC CAUUGAAA-- UAGGGAC(GC UA)GUUUCUA UUGAGGCGUU -G-UUGGGAU 3721 ACUACC|CUU G-ACUUAUGG UUA-CUCUAA -CCCGCU--- -GGCA(--UA -AUC)-GGCC 3781 AGGGA-GACA GUGUCUGACG GA-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AGAG 3841 UAAC)GGAGG C|G|C|UCAA AGGUUGGC|U CAGAUUGG(U UGGAAA)UCA AUCGUA-GA| 3901 GU(G|UAAAG )GUAAAAGCC AGCUUGACUG CGAGAG(CUA CAA)CUCGAG CAGGUAG(GA 3961 AA)CU-AGGA |CUUAGUGAU CCGGUGGUAC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|UGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UUC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGCAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-UAG 4261 GUAAUUU|GA -|GAGGAUC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACU UACCGCUGGU GUACCAGU|U GUUCC(GC-C A-)GGAGCA- CGGCUGGAUA 4381 GCU-AUGUAG GGAAGGGAUA AGCGCU(GAA AGCAUCUA)A GUGCGAAGCC CACCUC|AAG 4441 AUGAGAUUAC C|CA|UUC-- -(-GUAA-)- --GAA--UU- AAGA|-GC|C CAGA-(GAGA 4501 UG-A)UCUGG -UAGAUAG|G CUGG|AAGUG -GAAGAGUU- -(GCGA-)-- GACUU|GG-A 4561 GCGG|A|CCA GUACUAAUC- GCUCGA-GG| ACUUUA-CCA A-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS L.lactis.3 4759 bp RNA RNA 11-JAN-191 DEFINITION Lactococcus lactis. ACCESSION No information KEYWORDS No information. SOURCE Lactococcus lactis. ORGANISM Lactococcus lactis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X68435 ID LL23SRNA2 standard; DNA; PRO; 2901 BP. XX AC X68435; XX DT 29-MAR-1993 (Rel. 35, Created) DT 29-MAR-1993 (Rel. 35, Last updated, Version 2) XX DE L.lactis (DSM 20481) gene for 23S rRNA XX KW 23S ribosomal RNA. XX OS Lactococcus lactis OC Prokaryota; Bacteria; Firmicutes; Regular asporogenous rods; OC Lactobacillaceae. XX RN [1] RP 1-2901 RA Ludwig W.; RT ; RL Submitted (08-SEP-1992) on tape to the EMBL Data Library by: RL W. Ludwig, Lehrst. fuer Mikrobiologie TU Muenchen, Arcisstr. 21, RL 8000 Muenchen 2, FRG XX RN [3] RP 1-2901 RA Ludwig W., Kirchof G., Klugbauer N., Weizenegger M., Betzl D., RA Ehrmann M., Hertel C., Jilg S., Tatzel R., Zitzelsberger H., RA Liebl S., Hochberger M., Shah J., Lane D., Wallnoef P.R.; RT "Complete 23S ribosomal RNA sequences of Gram-positive Bacteria RT with a low DNA G+C content"; RL Syst. Appl. Microbiol. 15:487-501(1992). XX CC *source: strain=ssp.lactis, strain DSM 20481; XX FH Key Location/Qualifiers FH FT rRNA 1..2901 FT /gene="23S rRNA" FT /product="23S rRNA" XX SQ Sequence 2901 BP; 827 A; 585 C; 854 G; 635 T; 0 other; BASE COUNT 827 a 585 c 854 g 635 t 1858 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG CAAAGUUAA- --UAAGGGCG CACGGUGGAU 121 G|CCUUGG|C ACUAAG|AG| CC-GAUGAAG GA|CGUG(AC UA-AC-)G|- ACG-AUAUUC 181 UAGGGG|-GA GCA(G-UA-A GUA-)CGCAU UG-AUC-CCU AGGUC|UCCG AAUGGG(GAA 241 A)CCC|AGCU GC--(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---uacua)- -GCAGUU-AU UC-AUGAGU( 481 GA-AUACA-- UA)GCU-CAU -GUA--AAG- GUA-AC|GC- AGAGAACU|G A(AACA)UCU 541 AAGUA-CCUG CAGGAAGAGA AAGU(-AAAA --)ACGAU|U UC-GUAAGUA GC(GGCGA)G 601 CGA-ACG-CG AA-GAA-GGG CAAAccaaga -ag------- -----(cuug -)-------- 661 ----cuucuu gggguuguag gacugcaacg ug-------- ---------- ---------- 721 ---------- ----gacuua agcauuau-a gucGAAu-aa c-c(u-ggga a)g-guuaau 781 |c(aaa)gaG GG(UAAUAAU )CCCGU-Aga c-gaaauagc gcuuauaccu ---------- 841 ---------- ----agcagu auccu---GA GUAGGGCUGG A(CACGCG-A AA)UCCAGUU 901 UGAAUCC-GG G-AG(GACCA U)CU-CCC-A ACCCUAA--- -AUACUCCUU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G AACCCC(GA- GA-)GGGGA- 1021 -GUGAAA-UA GCACCUGAAA CCGU-GUGCC UACAA-G-AA GUUCGAGCCC --G------- 1081 --------(- ---uuaa--) ---------- -----U-GGG UGAGAGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GUUA- UGAUGC-GAG GUUAAGUu-( -gaaga)-gA 1201 C-GGAGCCGU AGG(GAAA-) CCGAGUCU(G AA-UA)GGGC GA-------- ---------- 1261 ---------- -----cu-ua G-UAUCAUGA UGUA-GACCC GAAAC-CUA- GUGA-CCUAU 1321 CCAUGAG|CA GGGUGAAGGU GUGG(UAAG) AC-GCACUGG AGGCCCGAAC C-AGGACAC( 1381 -GUUGAAAA) GUGUU|UGG- AUGAC-UUGU GGAUAGCGGA (-GAAAU)UC CAAACGAACU 1441 GGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-GUCG AAaug-uaa| 1501 -gug|UAUUG G|AGGUAG|A GC-ACUGU-U UGGGUGA-GG |-GGUCC(gu cua)GGAUUA 1561 CCAAUCUCAG -AUAAACUCC GAA-UG-|CU A-A-U-A--- caca----u| guu-cggcAG 1621 UCAGAC--UG C-GAGU(GCU AAG)AUCCGU -AGUC-GAAA GGG(-AAACA G-)CCCAGAC 1681 CAACAGCUAA G-GU|CCCA- AAAUA-UAUG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 GGUUGCACA- GACAACUAGG AUGUUAGC(U CAGAAGCA)G CUAU-CAU|U (CAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUA GU-----CGA GU-GAC-CC- -UGC|GCCGA AAAU-GUAC- 1861 CGGGGCU-AA ACAUA-U|U| ACCGAAGCU| UUGG|auuua au-----(uu a--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --auuaaau- GG-UAGGAGA G|-----CGU 2221 U-CUU-AAc- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --C-GCGA-U 2341 GAAGGUA-U- A-CC(-GUGA -)GGA--GUG CUGG|AGCGU U-AAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGC-AA GAUAAG(UGA GAAU)CUUAU C|CACC-GUA AGACUAAGGU 2461 UUCCAG-GGG AAGG-(CUCG U)CC|G-CCC UGGGUUAGU| CGG|G-ACCU AAGGCGAGGC 2521 C(GAAA)-G- GCGU-AGUCG AUGG-ACAAC UGG-(UU-GA UAUU)C-CAG U|AC|ua-g- 2581 au-aug-auc ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------guga u------gga g--gga-cgc aguaggcua- agag-au|gc c-agu(uaa- 2761 -uggau---- --)uc-uggu -|cuaa---- ---------- ---gcag-ug aggug----- 2821 --ugaga-ug u-gu(ca-aa -u-)gc|a-- uuucucuuua a--------- cauu-gagcu 2881 gug-augg|g ga-|------ -----agcaa c(-uacg--) guugc----- ------gaac 2941 --ucucu-ga uguc-aca-| cugccaagaa a-agcuuc-u a-gcguaa-- ------ag-u 3001 -cauau--cu a|c|CCGUAC CGCAAACC(G ACACA)GG|U AG-UCGAGG- C-(GAGUA)G 3061 CCUCAGGUGA ||UCGAGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UAGCCCCGUA AC(-UUCG)G GAGAAGGGGU |gcuggu--- ---------- ---------- 3181 g(-uaaa-)a ---------- ---------- --gccag-C| C(GCA)GUGA AUAGGCC-CA 3241 AG|CAACU-- ---GU(UUAU CAAAA)ACAC AGCUCUCUG| CUAAACC(GC AA------)G 3301 GUGAUGU-AU AGGGGGUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGUGCUUA 3361 GA-----c-- (G-UAA)g-- --------UC GA-AGGUAUG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGUAAU GA-UUUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUU |UUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCAUGG|A GCU-UUACUG U|AGUUUGAU AUU|GAGUAC CUGUAAGUCA UGUACAGGAU 3661 AGGUAGGAGC CAUUGAAA-- UAGGGAC(GC UA)GUUUCUA UUGAGGCGUU -G-UUGGGAU 3721 ACUACC|CUU G-ACUUAUGG UUA-CUCUAA -CCCGCU--- -GGCA(--UA -AUC)-GGCC 3781 AGGGA-GACA GUGUCUGACG GA-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AGAG 3841 UAAC)GGAGG C|G|C|UCAA AGGUUGGC|U CAGAUUGG(U UGGAAA)UCA AUCGUA-GA| 3901 GU(G|UAAAG )GUAAAAGCC AGCUUGACUG CGAGAG(CUA CAA)CUCGAG CAGGUAG(GA 3961 AA)CU-AGGA |CUUAGUGAU CCGGUGGUAC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|UGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UUC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGCAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-UAG 4261 GUAAUUU|GA -|GAGGAUC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACU UACCGCUGGU GUACCAGU|U GUUCC(GC-C A-)GGAGCA- CGGCUGGAUA 4381 GCU-AUGUAG GGAAGGGAUA AGCGCU(GAA AGCAUCUA)A GUGCGAAGCC CACCUC|AAG 4441 AUGAGAUUAC C|CA|UUC-- -(-GUAA-)- --GAA--UU- AAGA|-GC|C CAGA-(GAGA 4501 UG-A)UCUGG -UAGAUAG|G CUGG|AAGUG -GAAGAGUU- -(GCGA-)-- GACUU|GG-A 4561 GCGG|A|CCA GUACUAAUC- GCUCGA-GG| ACUUUA-CCA A-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS S.uberis 4759 bp RNA RNA 11-JAN-191 DEFINITION Streptococcus uberis. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus uberis. ORGANISM Streptococcus uberis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X68038; S60799 ID SU23SRRN standard; DNA; PRO; 2898 BP. XX AC X68038; S60799; XX DT 03-DEC-1993 (Rel. 38, Created) DT 03-DEC-1993 (Rel. 38, Last updated, Version 2) XX DE S.uberis gene for 23S rRNA XX KW 23S ribosomal RNA; ribosomal RNA. XX OS Streptococcus uberis OC Prokaryota; Bacteria; Firmicutes; Gram-positive cocci; OC Streptococcaceae. XX RN [1] RP 1-2898 RA Harland N.M.; RT ; RL Submitted (12-AUG-1992) to the EMBL/GenBank/DDBJ databases. RL N.M. Harland, AFRC Inst of Food Research, Reading Lab/Microbiology RL Dept, Earley Gate, Whiteknights Rd, Reading RG6 2EF, UK XX RN [2] RA Harland N.M., Leigh J.A., Collins M.D.; RT "Development of gene probes for the specific identification of RT Streptococcus uberis and Streptococcus parauberis based upon large RT subunit rRNA gene sequences."; RL J. Appl. Bacteriol. 74:526-531(1993). XX FH Key Location/Qualifiers FH FT source 1..2898 FT /organism="Streptococcus uberis" FT /strain="NCDO 2038" FT rRNA 1..2898 FT /product="23S ribosomal RNA" XX SQ Sequence 2898 BP; 815 A; 589 C; 866 G; 625 T; 3 other; BASE COUNT 815 a 589 c 866 g 625 t 1864 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGUUAA- --UAAGGGCG CACGGUGGAU 121 G|CCUUGG|C ACUAGA|AG| CC-GANGAAG GA|CGUG(AC UA-AC-)G|- ACG-AAAUGC 181 UUUGGG|-GA GCU(G-UA-A GUA-)AGCGC UG-AUC-CAG AGAUG|UCCG AAUGGG(GGA 241 A)CCC|GGCA UGU-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- -----aau)- GCAUGUC-AU CC-AUGACU( 481 G---uua--- -A)GGU-CAU -GAG--AAG- GAAGAC|GC- AGUGAACU|G A(AACA)UCU 541 AAGUA-GCUG CAGGAAGAGA AAGC(-AAAC --)GCGAU|U GC-CUUAGUA GC(GGCGA)G 601 CGA-AAC-GG CA-GGA-GGG CAAAccgagg -ag------- -----(uuua -)-------- 661 ----cuccuc gggguuguag gacugcgaag ---------- ---------- ---------- 721 ---------- -ugggacaua aaguuaau-a gaagaau-ua c-c(u-ggga a)g-guaagc 781 |c(aaa)gaG AG(UAACAGC )CUCGU-Auu u-aaaauuga cuuuagcccu ---------- 841 ---------- ----agcagu auccu---GA GUACGGCGAG A(CACGCG-A AA)UCUCGUC 901 GGAAUCU-GG G-AG(GACCA U)CU-CCC-A ACCCUAA--- -AUACUCUCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- GA-)GGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCGU-GUGCC UACAA-C-AA GUUCGAGCCC --G------- 1081 --------(- ---uuaa--) ---------- -----U-GGG UGAGAGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUA- UGAUGC-GAG GUUAAGUU-( -gaaga)-GA 1201 C-GGAGCCGU AGG(GAAA-) CCGAGUCU(U AA-UA)GGGC GU-------- ---------- 1261 ---------- -----ca-ua G-UAUCAUGU UGUA-GACCC GAAAC-CAU- GUGA-CCUAC 1321 CCAUGAG|CA GGUUGAAGGU GUGG(UAAA) AC-GCACUGG AGGACCGAAC C-AGGGCAC( 1381 -GUUGAAAA) GUGCU|UGG- AUGAC-UUGU GGGUAGCGGA (-GAAAU)UC CAAACGAACU 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-GUCG AUguu--aa| 1501 -guc|UCUUG G|AGGUAG|A GC-ACUGU-U UGGGUGA-GG |-GGUCC(au ccc)GGAUUA 1561 CCAAUCUCAG -AUAAACUCC GAA-UG-|CC A-A-GUA--- gaua----u| aau-cggcAG 1621 UCAGAC--UG C-GAGU(GCU AAG)AUCCGU -AGUC-GAAA GGG(-AAACA G-)CCNNGAC 1681 CACCAGCUAA G-GU|CCCA- AAAUA-AUUG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 GGUUGCACA- GACAACUAGG AUGUUAGC(U UAGAAGCA)G CUAUUCAU|U (CAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUA GU-----CGA GU-GAC-CC- -UGC|GCCGA AAAU-GUAC- 1861 CGGGGCUAAA ACAAU-U|U| ACCGAAGCU| GUGG|auccc -------(uu ag-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ----gggau- GG-UAGGAGA G|-----CGU 2221 U-CUA-UG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-GUGA-A 2341 GAAGGUA-U- A-CC(-GUGA -)GGA--GUG CUGG|AACGC A-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGCA-A GACAGG(UGA GAAU)CCUGU C|CACC-GUA AGACUAAGGU 2461 UUCCAG-GGG AAGG-(CUCG U)CC|G-CCC UGGGUUAGU| CGG|G-ACCU AAGGAGAGAC 2521 C(GAA-)-G- GUGU-AUCCG AUGG-CCAAC AGG-(UU-GA UAUU)C-CUG U|AC|ua-g- 2581 ua--ug-uau a--------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------guga u------gga g--gga-cgc agaaggcua- acua-aa|gc g-ugc(gac- 2761 -uggaa-gu- --)gc-acgu -|cuaa---- ---------- ---gcag-ug aggugu---- 2821 ---gaga-u- gagu(aa-aa -u-)gc|u-- uaucucuaua ---------a cauu-gagcu 2881 gug-augg|g ga-|------ -------gcg a(aaauaag) uagc------ ------gaag 2941 --uuagu-ga uguc-aca-| cugccaagaa a-agcuuc-u a-gcguu--- -----uaaau 3001 -acaua--cu a|C|CCGUAC CGCAAACC(G ACACA)GG|U AG-UCGAGG- C-(GAGUA)G 3061 CCUCAGGUGA ||UCGAGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |gcuguc--- ---------- ---------- 3181 a(-gcga-)u ---------- ---------- --gacag-C| C(GCA)GUGA AUAGGCC-CA 3241 AG|CAACU-- ---GU(UUAU CAAAA)ACAC AGCUCUCUG| CUAAAUC(GU AA------)G 3301 AUGAUGU-AU AGGGGGUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGUGCUUA 3361 GC-------- (G-UAA)--- --------GC GA-AGGUAUG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGUAAU GA-UUUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUU |UUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCAUGG|A GCU-UUACUG C|AGUUUGAU AUU|GAGUAU CUGUACCACA UGUACAGGAU 3661 AGGUAGGAGC CAUCGAGA-- ACGGGAC(GC CA)GUUUCGU UUGAGGCGUU -G-UUGGGAU 3721 ACUACC|CUU G-UGUUAUGG CUA-CUCUAA -CCCGGA--- -UAGG(--UG -AUC)-CCUA 3781 UCGGA-GACA GUGUCUGACG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAGG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(U UGGAAA)UCA UUCGCA-GA| 3901 GU(G|UAAAG )GUAUAAGGG AGCUUGACUG CGAGAG(CAA CAA)CUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUUC CG(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|UGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UUC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGCAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-UAG 4261 GAAAUUU|GA -|GAGGAUC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)A 4321 GAGUGG|ACU UACCGCUGGU GUACCAGU|U GUCUU(GC-C A-)AAGGCA- UCGCUGGGUA 4381 GCU-AUGUAG GGAAGGGAUA AGCGCU(GAA AGCAUCUA)A GUGCGAACGC CCCCUC|AAG 4441 AUGAGAUUUC C|CA|UGAU- -(-uuuau)- -AUCA--GU- AAGA|-GC|C CUGA-(GAGA 4501 UG-A)UCAGG -UAGAUAG|G UUAG|AAGUG -GAAGUGUA- -(GUGA-)-- UACAU|GU-A 4561 GCGG|A|CUA AUACUAAUA- GCUCGA-GG| ACUUAU-CC- --------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS S.thermoph 4759 bp RNA RNA 11-JAN-191 DEFINITION Streptococcus thermophilus. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus thermophilus. ORGANISM Streptococcus thermophilus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X68429 ID ST23SRRN standard; DNA; PRO; 2900 BP. XX AC X68429; XX DT 29-MAR-1993 (Rel. 35, Created) DT 29-MAR-1993 (Rel. 35, Last updated, Version 2) XX DE S.thermophilus for 23S rRNA XX KW 23S ribosomal RNA. XX OS Streptococcus thermophilus OC Prokaryota; Bacteria; Firmicutes; Gram-positive cocci; OC Streptococcaceae. XX RN [1] RP 1-2900 RA Ludwig W.; RT ; RL Submitted (08-SEP-1992) on tape to the EMBL Data Library by: RL W. Ludwig, Lehrst. fuer Mikrobiologie TU Muenchen, Arcisstr. 21, RL 8000 Muenchen 2, FRG XX RN [2] RP 1-2900 RA Ludwig W., Kirchof G., Klugbauer N., Weizenegger M., Betzl D., RA Ehrmann M., Hertel C., Jilg S., Tatzel R., Zitzelsberger H., RA Liebl S., Hochberger M., Shah J., Lane D., Wallnoef P.R.; RT "Complete 23S ribosomal RNA sequences of Gram-positive Bacteria RT with a low DNA G+C content"; RL Syst. Appl. Microbiol. 15:487-501(1992). XX CC *source: strain=DSM 20617; XX FH Key Location/Qualifiers FH FT rRNA 1..2900 FT /product="23S ribosomal RNA" XX SQ Sequence 2900 BP; 815 A; 585 C; 862 G; 638 T; 0 other; BASE COUNT 815 a 585 c 862 g 638 t 1859 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGUUAA- --UAAGGGCG CACGGUGGAU 121 G|CCUUGG|C ACUAGA|AG| CC-GAUGAAG GA|CGUG(AC UA-AC-)G|- ACG-AAAUGC 181 UUUGGG|-GA GCU(G-UA-A GUG-)AGCAA UG-AUC-CAG AGAUG|UCCG AAUGGG(GGA 241 A)CCC|GGCA GGU-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- -----aau)- GCCUGUC-AC UC-AUUACU( 481 G---uua--- -A)GGU-AAU -GUA--GAG- GaagAC|GC- AGUGAACU|G A(AACA)UCU 541 AAGUA-GCUG CAGGAAGAGA AAGC(-AAAA --)GCGAU|U GC-CUUAGUA GC(GGCGA)G 601 CGA-AAC-GG CA-AGA-GGG CAAAccgaag -ag------- -----(uuua -)-------- 661 ----cucuuc gggguuguag gacugcaacg ---------- ---------- ---------- 721 ---------- --uggacuua aagauuau-a gaagaac-ua c-c(u-ggga a)g-guaggc 781 |c(aaa)gaG AG(UAAUAGC )CUCGU-Auu c-gaaauagu cuuuauaccu ---------- 841 ---------- ----agcagu auccu---GA GUACGGCGAG A(CACGAG-A AA)UCUCGUC 901 GGAAUCU-GG G-AG(GACCA U)CU-CCC-A ACCCUAA--- -AUACUCUUU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- GA-)GGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCGU-GUGCC UACAA-C-AA GUUCGAGCCC --G------- 1081 --------(- ---uuaa--) ---------- -----U-GGG UGAGAGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUA- UGAUGC-GAG GUUAAGUu-( -gaaga)-gA 1201 C-GGAGCCGU AGG(GAAA-) CCGAGUCU(U AA-UA)GGGC GC-------- ---------- 1261 ---------- -----au-ua G-UAUCAUGU CGUA-GACCC GAAAC-CAU- GUGA-CCUAC 1321 CCAUGAG|CA GGUUGAAGGU GAGG(UAAA) AC-UCACUGG AGGACCGAAC C-AGGGCAC( 1381 -GUUGAAAA) GUGCU|UGG- AUGAC-UUGU GGGUAGCGGA (-GAAAU)UC CAAACGAACU 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-GUCG AUguu--aa| 1501 -guc|UCUUG G|AGGUAG|A GC-ACUGU-U UGGGUGA-GG |-GGUCC(au ccc)GGAUUA 1561 CCAAUCUCAG -AUAAACUCC GAA-UG-|CC A-AUG-a--- gaua----u| aau-cggcAG 1621 UCAGAC--UG C-GAGU(GCU AAG)AUCCGU -AGUC-GAAA GGG(-AAACA G-)CCCAGAC 1681 CACCAGCUAA G-GU|CCCA- AAAUA-UAUG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 GGUUGCACA- GACAACUAGG AUGUUAGC(U UAGAAGCA)G CUAUUCAU|U (CAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUA GU-----CGA GU-GAC-CC- -UGC|GCCGA AAAU-GUAC- 1861 CGGGGCUAAA ACAUA-U|U| ACCGAAGCU| GUGG|auacc u------(uu au-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ---agguau- GG-UAGGAGA G|-----CGU 2221 U-CUA-UG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-GCGA-A 2341 GAAGGUG-U- A-CC(-GUGA -)GGA--GUG CUGG|AGCGC A-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGAA-A GACAGG(UGA GAAU)CCUGU C|CACC-GUA AGACUAAGGU 2461 UUCCAG-GGG AAGG-(CUCG U)CC|G-CCC UGGGUUAGU| CGG|G-ACCU AAGGAGAGAC 2521 C(GAAA)-G- GUGU-AUCCG AUGG-ACAAC AGG-(UU-GA UAUU)C-CUG U|AC|ua-g- 2581 ag--ua-uau a--------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------guga u------gga g--gga-cgc aguaggcua- acua-aa|cc a-gac(gau- 2761 -uggaa-gu- --)gu-cugg -|ccaa---- ---------- ---gcag-ug aggugu---- 2821 ---gaua-u- gagu(ca-aa -u-)gc|u-- uauaucuuua ---------a cauu-gagcu 2881 gug-augg|g ga-|------ -------gcg a(aguuuag) uagc------ ------gaag 2941 --uuagu-ga uguc-aca-| cugccgagaa a-agcuuc-u a-gcguu--- ------aauu 3001 -auacu--cu a|C|CCGUAC CGCAAACC(G ACACA)GG|U AG-UCGAGG- C-(GAGUA)G 3061 CCUCAGGUGA ||GCGAGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGGCCCCGUA AC(-UUCG)G GAGAAGGGGC |gcugac--- ---------- ---------- 3181 -(-ugaug)- ---------- ---------- --gucag-C| C(GCA)GUGA AUAGGCC-CA 3241 AG|CAACU-- ---GU(UUAU CAAAA)ACAC AGCUCUCUG| CUAAAUC(GU AA------)G 3301 AUGAUGU-AU AGGGGGUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGUGCUUA 3361 GC-------- (G-UAA)--- --------GC GA-AGGCAUG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGUAAU GA-UUUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUU |UUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCAUGG|A GCU-UUACUG C|AGUUUGAU AUU|GAGUAU CUGUACCACA UGUACAGGAU 3661 AGGUAGGAGC CUAUGACC-- UCGGGAC(GC CA)GUUUCGA GUGAGGCGUU -G-UUGGGAU 3721 ACUACC|CUU G-UGUUAUGG CUA-CUCUAA -CCCAGA--- -UAGG(--UU -AUC)-CCUA 3781 UCGGA-GACA GUGUCUGACG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAGG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(U UGGAAA)UCA UUCGCA-GA| 3901 GU(G|UAAAG )GUAUAAGGG AGCUUGACUG CGAGAG(CUA CAA)CUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUUC CG(UAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|UGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UUC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGCAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-UAG 4261 GAAAUUU|GA -|GAGGAUC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)A 4321 GAGUGG|ACU UACCGCUGGU GUACCAGU|U GUUCU(GC-C A-)AGAGCA- UCGCUGGGUA 4381 GCU-AUGUAG GGAAGGGAUA AACGCU(GAA AGCAUCUA)A GUGUGAAGCC CACCUC|AAG 4441 AUGAGAUUUC C|CA|UGAU- -(-uuuau)- -AUCA--GU- AAGA|-GC|C CUGA-(GAGA 4501 UG-A)UCAGG -UUGAUAG|G UUAG|AAGUG -GAAGUGUG- -(GUGA-)-- CACAU|GU-A 4561 GCGG|A|CUA AUACUAAUA- GCUCGA-GG| ACUUAU-CCA A-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS S.oralis 4759 bp RNA RNA 11-JAN-191 DEFINITION Streptococcus oralis. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus oralis. ORGANISM Streptococcus oralis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X68427 ID SO23SRRN standard; DNA; PRO; 2902 BP. XX AC X68427; XX DT 29-MAR-1993 (Rel. 35, Created) DT 29-MAR-1993 (Rel. 35, Last updated, Version 2) XX DE S.oralis gene for 23S rRNA XX KW 23S ribosomal RNA. XX OS Streptococcus oralis OC Prokaryota; Bacteria; Firmicutes; Gram-positive cocci; OC Streptococcaceae. XX RN [1] RP 1-2902 RA Ludwig W.; RT ; RL Submitted (08-SEP-1992) on tape to the EMBL Data Library by: RL W. Ludwig, Lehrst. fuer Mikrobiologie TU Muenchen, Arcisstr. 21, RL 8000 Muenchen 2, FRG XX RN [2] RP 1-2902 RA Ludwig W., Kirchof G., Klugbauer N., Weizenegger M., Betzl D., RA Ehrmann M., Hertel C., Jilg S., Tatzel R., Zitzelsberger H., RA Liebl S., Hochberger M., Shah J., Lane D., Wallnoef P.R.; RT "Complete 23S ribosomal RNA sequences of Gram-positive Bacteria RT with a low DNA G+C content"; RL Syst. Appl. Microbiol. 15:487-501(1992). XX CC *source: strain=DSM 20066; XX FH Key Location/Qualifiers FH FT rRNA 1..2902 FT /product="23S ribosomal RNA" XX SQ Sequence 2902 BP; 822 A; 584 C; 862 G; 634 T; 0 other; BASE COUNT 822 a 584 c 862 g 634 t 1857 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGUUAA- --UAAGGGCG CACGGUGGAU 121 G|CCUUGG|C ACUAGG|AG| CC-GAAGAAG GA|CGUG(AC AA-AC-)G|- ACG-AUAUGC 181 CUUGGG|-UA GCU(G-UA-A GUA-)AGCGA UG-AUC-CAG GGAUU|UCCG AAUGGG(GGA 241 A)CCC|AACA GGU-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- -----acu)- ACCUGUU-AC CC-GCAUCU( 481 G---uua--- -A)GGA-UGU -GAG--GAG- GaagAC|GC- AGUGAACU|G A(AACA)UCU 541 AAGUA-GCUG CAGGAAGAGA AAGC(-AAAA --)GCGAU|U GC-CUUAGUA GC(GGCGA)G 601 CGA-AAC-GG CA-GGA-GGG CAAAccgaag -ag------- -----(uuua -)-------- 661 ----cucuuc gggguuguag gacugcaaug ---------- ---------- ---------- 721 ---------- --uggacuca aagauuau-a gaagaau-ga u-u(u-ggga a)g-aucagc 781 |c(aaa)gaG AG(UAAUAGC )CUCGU-Auu u-aaaauagu cuuuguaccu ---------- 841 ---------- ----agcagu auccu---GA GUACGGCGGG A(CACGUG-A AA)UCCCGUC 901 GGAAUCU-GG G-AG(GACCA U)CU-CCC-A ACCCUAA--- -AUACUCCCU AGUGACCGAU 961 AGUA-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- GA-)GGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCGU-GUGCC UACAA-C-AA GUUCGAGCCC --G------- 1081 --------(- ---uuaa--) ---------- -----U-GGG UGAGAGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUA- UGAUGC-GAG GUUAAGUu-( -gaaga)-gA 1201 C-GGAGCCGC AGG(GAAA-) CCGAGUCU(G AA-UA)GGGC GA-------- ---------- 1261 ---------- -----au-ua G-UAUCAUGU CGUA-GACCC GAAAC-CAU- GUGA-CCUAC 1321 CCAUGAG|CA GGUUGAAGGU GCGG(UAAG) AC-GCACUGG AGGACCGAAC C-AGGGCAC( 1381 -GUUGAAAA) GUGCU|UGG- AUGAC-UUGU GGGUAGCGGA (-GAAAU)UC CAAACGAACU 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-GUCG ACauc--aa| 1501 -gau|UCUUG G|AGGUAG|A GC-ACUGU-U UGGGUGA-GG |-GGUCC(au ccc)GGAUUA 1561 CCAAUCUCAG -AUAAACUCC GAA-UG-|CC A-AUG-a--- auua----u| ggu-cggcAG 1621 UCAGAC--UG C-GAGU(GCU AAG)AUCCGU -AGUC-GAAA GGG(-AAACA G-)CCCAGAC 1681 CACCAGCUAA G-GU|CCCA- AAAUA-AUUG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 GGUUGCACA- GACAACUAGG AUGUUAGC(U UAGAAGCA)G CUAU-CAU|U (CAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUA GU-----CGA GU-GAC-CC- -UGC|GCCGA AAAU-GUAC- 1861 CGGGGCUAAA ACAAU-U|U| ACCGAAGCU| GUGG|auacc u------(uu au-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ---agguau- GG-UAGGAGA G|-----CGU 2221 U-CUA-UG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-GUGA-A 2341 GAAGGUA-U- A-CC(-GUGA -)GGA--GUG CUGG|AACGC A-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGAA-A GACAGG(UGA GAAU)CCUGU C|CACC-GUA AGACUAAGGU 2461 UUCCAG-GGG AAGG-(CUCG U)CC|G-CCC UGGGUUAGU| CGG|G-ACCU AAGGAGAGGC 2521 C(GAAA)-G- GUGU-AUCCG AUGG-ACAAC AGG-(UU-GA UAUU)C-CUG U|AC|ua-g- 2581 ag--ua-ugu a--------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------guga u------gga g--gga-cgc aguaggcua- acua-aa|gc a-gac(gaa- 2761 -uggaa-ga- --)gu-cugu -|cuaa---- ---------- ---gcag-ug aggugu---- 2821 ---gaua-u- gagu(ca-aa -u-)gc|u-- uauaucuaua ---------a cauu-gagcu 2881 gug-augg|g ga-|------ -------gcg a-aguuuag) uagc------ ------gaag 2941 --uuagu-ga uguc-aca-| cugccaagaa a-agcuuc-u a-gcguuu-- -----aaa-c 3001 -auacu--cu a|C|CCGUAC CGCAAACC(G ACACA)GG|U AG-UCGAGG- C-(GAGUA)G 3061 CCUCAGGUGA ||GCGAGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |gcugau--- ---------- ---------- 3181 -(-uuuau)- ---------- ---------- --gucag-C| C(GCA)GUGA AUAGGCC-CA 3241 AG|CAACU-- ---GU(UUAU CAAAA)ACAC AGCUCUCUG| CUAAAUC(GU AA------)G 3301 AUGAUGU-AU AGGGGGUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGUGCUUA 3361 GG-----a-- (G-UAA)u-- --------CC GA-AGGUAUG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGUAAU GA-UUUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUU |UUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCAUGG|A GCU-UUACUG C|AGUUUGAU AUU|GAGUGU CUGUACCACA UGUACAGGAU 3661 AGGUAGGAGU CUAUGAGA-- UCGGGAC(GC CA)GUUUCGA AGGAGACGUU -G-UUGGGAU 3721 ACUACC|CUU G-UGUUAUGG CCA-CUCUAA -CCCGGA--- -UAGG(--UU -AUC)-CCUA 3781 UCGGA-GACA GUGUCUGACG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAGG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(U UGGAAA)UCA UUCGCA-GA| 3901 GU(G|UAAAG )GUAUAAGGG AGCUUGACUG CGAGAG(CUA CAA)CUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUUC CG(UAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|UGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UUC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGCAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-UAG 4261 GAAAUUU|GA -|GAGGAUC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)A 4321 GAGUGG|ACU UACCGCUGGU GUACCAGU|U GUCUU(GC-C A-)AAGGCA- UCGCUGGGUA 4381 GCU-AUGUAG GGAAGGGAUA AACGCU(GAA AGCAUCUA)A GUGUGAAACC CACCUC|AAG 4441 AUGAGAUUUC C|CA|UGAU- -(-uuuau)- -AUCA--GU- AAGA|-GC|C CUGA-(GAGA 4501 UG-A)UCAGG -UAGAUAG|G UUAG|AAGUG -GAAGUGUG- -(GCGA-)-- CACAU|GU-A 4561 GCGG|A|CUA AUACUAAUA- GCUCGA-GG| ACUUAU-CCA A-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS S.parauber 4759 bp RNA RNA 11-JAN-191 DEFINITION Streptococcus parauberis. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus parauberis. ORGANISM Streptococcus parauberis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X68036; S60368 ID SP23SRRN standard; DNA; PRO; 2901 BP. XX AC X68036; S60368; XX DT 01-DEC-1993 (Rel. 38, Created) DT 01-DEC-1993 (Rel. 38, Last updated, Version 2) XX DE S.parauberis gene for 23S rRNA XX KW 23S ribosomal RNA; ribosomal RNA. XX OS Streptococcus parauberis OC Prokaryota; Bacteria; Firmicutes; Gram-positive cocci; OC Streptococcaceae. XX RN [1] RP 1-2901 RA Harland N.M.; RT ; RL Submitted (12-AUG-1992) to the EMBL/GenBank/DDBJ databases. RL N.M. Harland, AFRC Inst of Food Research, Reading Lab/Microbiology RL Dept, Earley Gate, Whiteknights Rd, Reading RG6 2EF, UK XX RN [2] RA Harland N.M., Leigh J.A., Collins M.D.; RT "Development of gene probes for the specific identification of RT Streptococcus uberis and Streptococcus parauberis based upon large RT subunit rRNA gene sequences."; RL J. Appl. Bacteriol. 74:526-531(1993). XX FH Key Location/Qualifiers FH FT source 1..2901 FT /organism="Streptococcus parauberis" FT /strain="NCDO 2020" FT rRNA 1..2901 FT /product="23S ribosomal RNA" XX SQ Sequence 2901 BP; 830 A; 582 C; 852 G; 630 T; 7 other; BASE COUNT 830 a 582 c 852 g 630 t 1865 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGUUAA- --UAAGGGCG CACGGUGGAU 121 G|CCUUGG|C ACUAGA|AG| CC-GAUGAAG GA|CGUG(AC UA-AC-)G|- ACG-AAAUGC 181 UUUGGG|-GA GCU(G-UA-A GUA-)AGCAA AG-AUC-CAG AGAUG|UCCG AAUGGG(GGA 241 A)CCC|GGCA UGU-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- -----aau)- GCAUGUC-AU CC-AUGACU( 481 G---uua--- -A)GGU-CAU -GAG--AAG- GAAGAC|GC- AGUGAACU|G A(AACA)UCU 541 AAGUA-GCUG CAGGAAGAGA AAGC(-AAAC --)GCGAU|U GC-CUUAGUA GC(GGCGA)G 601 CGA-AAC-GG CA-GAA-GGG CAAAccgagg -ag------- -----(uuua -)-------- 661 ----cuccuc gggguuguag gacugcgacg ---------- ---------- ---------- 721 ---------- -uggga-uca aauacuau-a gaagaau-ua c-c(u-ggga a)g-guaagc 781 |c(aaa)gaG AG(UAAUAGC )CUCGU-Auu u-aaaauagu aaaugacucu ---------- 841 ---------- ----agcagu auccu---GA GUACGGCGAG A(CACGCG-A AA)UCUCGUC 901 GGAAUCU-GG G-AG(GACCA U)CU-CCC-A ACCCUAA--- -AUACUCUCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCGU-GUGCC UACAA-C-AA GUUCGAGCCC --G------- 1081 --------(- ---uuaa--) ---------- -----U-GGG UGAGAGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUA- UGAUGC-GAG GUUAAGUU-( -gaaga)-GA 1201 C-GGAGCCGU AGG(GAAA-) CCGAGUCU(U AA-UA)GGGC GA-------- ---------- 1261 ---------- -----cu-ua G-UAUCAUGU UGUA-GACCC GAAAC-CAU- GUGA-CCUAC 1321 CCAUGAG|CA GGUUGAAGGU GAGG(UAAA) AC-UCACUGG AGGACCGAAC C-AGGGCAC( 1381 -GUUGAAAA) GUGCU|UGG- AUGAC-UUGU GGGUAGCGGA (-GAAAU)UC CAAACGAACU 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-GUCG AUguu--aa| 1501 -guc|UCUUG G|AGGUAG|A GC-ACUGU-U UGGGUGA-GG |-GGUCC(au ccc)GGAUUA 1561 CCAAUCUCAG -AUAAACUCC GAA-UG-|CC A-ACG-A--- gaua----u| aau-cggcAG 1621 UCAGAC--UG C-GAGU(GCU AAG)AUCCGU -AGUC-GAAA GGG(-AAACA G-)CCCAGAC 1681 CACCAGCUAA G-GU|CCCA- AAAUA-AUUG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 GGUUGCACA- GACAACUAGG AUGUUAGC(U UAGAAGCA)G CUAUUCAU|U (CAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUA GU-----CGA GU-GAC-CC- -UGC|GCCGA AAAU-GUAC- 1861 CGGGGCUAAA ACAAU-U|U| ACCGAAGCU| GUGG|auuac cu-----(uu ag-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --agguaau- GG-UAGGAGA G|-----CGU 2221 U-CUA-UG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-GUGA-A 2341 GAAGGUA-U- A-CC(-GUGA -)GGA--GUG CUGG|AACGC A-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGAA-A GACAGG(UGA GAAU)CCUGU C|CACC-GUA AGACUAAGGU 2461 UUCCAG-GGG AAGG-(CUCG U)CC|G-CCC UGGGUUAGU| CGG|G-ACCU AAGGAGAGAC 2521 C(GAAA)-G- GUGU-AUUCG AUGG-CCAAC AGG-(UU-GA UAUU)C-CUG U|AC|ua-g- 2581 ua--ug-uaa a--------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------guga u------gga g--gga-cgc aguaggcua- acua-aa|gc g-ugc(gaa- 2761 -uggaa-ga- --)gc-acgu -|ucaa---- ---------- ---gcag-ug aggugu---- 2821 ---ggua-u- gngu(ca-aa -u-)gc|u-- uauaccuaau ---------a cauu-gagcu 2881 gug-auga|g ga-|------ -------gcg a(aauuaag) uagc------ ------gaag 2941 --uuagu-ga uguc-aca-| cugccaagaa a-agcuuc-u a-gcguu--- -----uaauu 3001 -acaua--cu a|C|CCGUAC CGCAAACC(G ACACA)GG|U AG-UCGAGG- C-(GAGUA)G 3061 CCUCAGGUGA ||UCGAGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |gcuggc--- ---------- ---------- 3181 -(-guuan)n ---------- ---------- --guca--N| C(GCA)GUGA AUAGGCC-CA 3241 AG|CAACU-- ---GU(UUAU CAAAA)ACAC AGCUCUCUG| CUAAAUC(GU AA------)G 3301 AUGAUGU-AU AGGGGGUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGUGCUUA 3361 GC-------- (G-UAA)--- --------GC GA-AGGUAUG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGUAAU GA-UUUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUU |UUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCAUGG|A GCU-UUACUG C|AGUUUGAU AUU|GAGUAU CUGUACCACA UGUACAGGAU 3661 AGGUAGGAGC CAUUGAAG-- ACGGGAC(GC CA)GUUUCGU CUGAGGCAAU -G-UUGGGAU 3721 ACUACC|CUU G-UGUUAUGG CUA-CUCUAA -CCCAGA--- -UAGG(--UU -AAC)-CCUA 3781 UCGGA-GACA GUGUCUGACG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAGG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAUUGG(U UGGAAA)UCA AUCGUA-GA| 3901 GU(G|UAAAG )GUAUAAGGG AGCUUGACUG CGAGAG(UUA CAA)CUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUUC CG(CANNNA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|UGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UUC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGCAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-UAG 4261 GAAAUUU|GA -|GAGGAUC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)A 4321 GAGUGG|ACU UACCGCUGGU GUACCAGU|U GUCUU(GC-C A-)AAGGCA- UCGCUGGGUA 4381 GCU-AUGUAG GGAAGGGAUA AGCGCU(GAA AGCAUCUA)A GUGCGAACGC CCCCUC|AAG 4441 AUGAGAUUUC C|CA|UGAU- -(-uuuau)- -AUCA--GU- AAGA|-GC|C CUGA-(GAGA 4501 UG-A)UCAGG -UAGAUAG|G UUAG|AAGUG -GAAGUAUA- -(GCGA-)-- UAUAU|GA-A 4561 GCGG|A|CUA AUACUAAUA- GCUCGA-GG| ACUUAU-CC- --------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS S.macedoni 4759 bp RNA RNA 20-JUL-1998 DEFINITION Streptococcus macedonicus.; 16S ribosomal RNA; 16S rRNA gene. ACCESSION Z94013 KEYWORDS 16S ribosomal RNA; 16S rRNA gene. SOURCE Streptococcus macedonicus. ORGANISM Streptococcus macedonicus. REFERENCE 1 (bases 1 to 2902) AUTHORS Devriese,L.A., Kalantzopoulos,G., Schleifer,K.H. and Kersters ,K. Tsakalidou,E., Zoidou,E., Pot,B., Wassill,L., Ludwig,W., TITLE Identification of streptococci from Greek Kasseri cheese and description of Streptococcus macedonicus sp. nov JOURNAL Int. J. Syst. Bacteriol. 48, 519-527 (1998) STANDARD No information REFERENCE 2 (bases 1 to 2902) AUTHORS Ludwig,W. TITLE Direct Submission JOURNAL Submitted (15-APR-1997) Ludwig W., Lehrstuhl fuer Mikrobiologie, Technische Universitae Muenchen, Muenchen, Germany STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: Z94013 BASE COUNT 818 a 581 c 864 g 639 t 1857 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UUAAGUUAA- --UAAGGGCG CACGGUGGAU 121 G|CCUUGG|C ACUAGA|AG| CC-GAUGAAG GA|CGUG(AC UA-AC-)G|- ACG-AAAUGC 181 UUUGGG|-GA GUU(G-UA-A GUA-)AACAU UG-AUC-CAG AGAUG|UCCG AAUGGG(GGA 241 A)CCC|GGCA UGU-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- -----gau)- GCAUGUC-AC UC-AUUACU( 481 G---uua--- -A)GGU-AAU -GAA--GAG- GaagAC|GC- AGUGAACU|G A(AACA)UCU 541 AAGUA-GCUG CAGGAAGAGA AAGC(-AAAU --)GCGAU|U GC-CUUAGUA GC(GGCGA)G 601 CGA-AGC-GG CA-AGA-GGG CAAAccgaug -ug------- -----(uuua -)-------- 661 ----cacauc gggguuguag gacugcgcug ---------- ---------- ---------- 721 ---------- -ugggaaguc aagauuau-a gaagaau-ua c-c(u-ggga a)g-guaagc 781 |c(aaa)gaG AG(UAACAGC )CUCGU-Auu c-gaaauagu cuuaaacccu ---------- 841 ---------- ----agcagu auccu---GA GUACGGCGAG A(CACGAG-A AA)UCUCGUU 901 GGAAUCU-GG G-AG(GACCA U)CU-CCC-A ACCCUAA--- -AUACUCUCU AGUGACCGAU 961 AGUG-AAC-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G CACCCC(GG- GA-)GGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCGU-GUGCC UACAA-C-AA GUUCGAGCCC --G------- 1081 --------(- ---uuaa--) ---------- -----U-GGG UGAGAGCGUG CCU(UUU-GU 1141 AG|A)AUGA| -ACCGGCGAG UUAC-GAUA- UGAUGC-GAG GUUAAGUu-( -gaaga)-gA 1201 C-GGAGCCGU AGG(GAAA-) CCGAGUCU(U AA-UA)GGGC GA-------- ---------- 1261 ---------- -----au-ua G-UAUCAUGU CGUA-GACCC GAAAC-CAU- GUGA-CCUAC 1321 CCAUGAG|CA GGGUGAAGGU GAGG(UAAA) AC-UCACUGG AGGCCCGAAC C-AGGGCAC( 1381 -GUUGAAAA) GUGCU|UGG- AUGAC-UUGU GGGUAGCGGA (-GAAAU)UC CAAACGAACU 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-GUCG AUguu--aa| 1501 -guc|UCUUG G|AGGUAG|A GC-ACUGU-U UGAUUGA-GG |-GGUCC(au ccc)GGAUUA 1561 CCAAUAUCAG -AUAAACUCC GAA-UG-|CC A-ACG-a--- gaua----u| aau-cggcAG 1621 UCAGAC--UG C-GAGU(GCU AAG)AUCCGU -AGUC-GAAA GGG(-AAACA G-)CCCAGAC 1681 CACCAGCUAA G-GU|CCCA- AAAUA-UAUG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 GGUUGCACA- GACAACUAGG AUGUUAGC(U UAGAAGCA)G CUAUUCAU|U (CAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUA GU-----CGA GU-GAC-CC- -UGC|GCCGA AAAU-GUAC- 1861 CGGGGCUAAA ACAUA-U|U| ACCGAAGCU| GUGG|auacc u------(uu ua-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ---ggguau- GG-UAGGAGA G|-----CGU 2221 U-CUA-UG-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-GUGA-U 2341 GAAGGUG-U- A-CC(-GUGA -)GGA--GCG CUGG|AACGC A-UAGAAGUG AGAAUGC-CG 2401 GU|AUG-AGU A--GCGAA-A GACAGG(UGA GAAU)CCUGU C|CACC-GUA UGACUAAGGU 2461 UUCCAG-GGG AAGG-(CUCG U)CC|U-CCC UGGGUUAGU| CGG|G-ACCU AAGGAGAGAC 2521 C(GAAA)-G- GUGU-AUCCG AUGG-ACAAC AGG-(UU-GA UAUU)C-CUG U|AC|ua-g- 2581 ag--ua-uau a--------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------guga u------gga g--gga-cgc aguaggcua- acua-aa|gc g-ugc(gau- 2761 -uggaa-gu- --)gc-acgu -|cuaa---- ---------- ---gcag-ug aggugu---- 2821 ---gaug-u- gagu(ca-aa -u-)gc|u-- uacgucuaua ---------a cauu-gagcu 2881 gug-augg|g ga-|------ -------gcg a(auuuaag) uagc------ ------gaag 2941 --uuagu-ga uguc-aca-| cugccaagaa a-agcuuc-u a-gcguu--- -----aau-u 3001 -auacu--cu a|C|CCGUAC CGCAAACC(G ACACA)GG|U AG-UCGAGG- C-(GAGUA)G 3061 CCUCAGGUGA ||GCGAGAGA ACUCUCGUU- ---------- ----AAGGAA CUCGGCAAAA 3121 UGGCCCCGUA AC(-UUCG)G GAGAAGGGGC |gcuggc--- ---------- ---------- 3181 -(-uuuaa)- ---------- ---------- --gucag-C| C(GCA)GUGA AUAGGCC-CA 3241 AG|CAACU-- ---GU(UUAU CAAAA)ACAC AGCUCUCUG| CUAAAUC(GU AA------)G 3301 AUGAUGU-AU AGGGGGUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGA GGAGCGCUUA 3361 GC-------- (a-UUA)--- --------GC GA-AGGUGUG AAUUGAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AAGGCGUAAU GA-UUUGGGC ACUGUCUCAA CGAGAGACUC 3541 G|GUGAAAUU |UUAGUAC-C UG(UGAAGAU G)CAGGUUAC CCGCGAC-AG GACGGAAAGA 3601 CCCCAUGG|A GCU-UUACUG C|AGUUUGAU AUU|GAGUAU GUGUACCACA UGUACAGGAU 3661 AGGUAGGAGC CUAAGAAG-- CCGGGAC(GC UA)GUUUCGG UGGAGGCGUU -G-UUGGGAU 3721 ACUACC|CUU G-UGUUAUGG CUA-CUCUAA -CCCAGA--- -UAGG(--UG -AUC)-CCUA 3781 UCGGA-GACA GUGUCUGACG GG-CAGUUUG ACUG(GGG)C GGUU|GCCUC C(UAA-AAGG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAUGG(U UGGAAA)UCA UUCGCA-GA| 3901 GU(G|UAAAG )GUAUAAGGG AGCUUGACUG CGAGAG(CUA CAA)CUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUUC CA(CAUGGA) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|UGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UUC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GUAG 4141 U---C)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGCAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-UAG 4261 GAAAUUU|GA -|GAGGAUC- UGC------- -------UCC (UAGUAC(GA GA)GGACC)A 4321 GAGUGG|ACU UACCGCUGGU GUACCAGU|U GUCUU(GC-C A-)AAGGCA- UCGCUGGGUA 4381 GCU-AUGUAG GGAAGGGAUA AACGCU(GAA AGCAUCUA)A GUGUGAAGCC CACCUC|AAG 4441 AUGAGAUUUC C|CA|UGAU- -(-uuuau)- -AUCA--GU- AAGA|-GC|C CUGA-(GAGA 4501 UG-A)UCAGG -UAGAUAG|G UUAG|AAGUG -GAAGUGUG- -(GUGA-)-- CACAU|GU-A 4561 GCGG|A|CUA AUACUAAUA- GCUCGA-GG| ACUUAU-CCA Aa------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS GRAM+.MYCO 4759 bp RNA RNA 17-JAN-1993 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 4759 others ORIGIN 1 -x~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~-)~|- ~~~~~~~~~~ 181 ~~~~~~|-~~ ~~~(~-~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~---- ---------- ---------- 301 ----~~~~~~ ~~~~~~~~~~ ~~~~~~---- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ------~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~-~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~|~ ~~-~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- 721 ---~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~-~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~-- -~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ -~~~-~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| -~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~-~~ ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 -~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 -~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~-~ ~~~~~~~~~~ |-~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~-~~~~| ~~~~~~~~~~ 1621 ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~-~~~~~ ~-~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~-~~~ ----~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~-~~- -~~~|~~~~~ ~~~~-~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~|-----~~~ 2221 ~-~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~- ~-~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 2401 ~~|~~~-~~~ ~-~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~-~~ ~~~~~~-~~~ ~~~~|~~~~- 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~------~~~ ~--~~~-~~~ ~~~~~~~~~- ~~~~-~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---- ---------- -~~~~~~~~~ ~~~~~~~~-- 2821 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~-----~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 --~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~-~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~-- --~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~---~~~~~ 3301 ~~~~~~~-~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~-~~ ~-~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~( ~~~)~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ 3721 ~~~~~~|~~~ ~~~-~~~~~~ ~~~~~-~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~-~~-~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~|~|~|~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~---~ ~~~~~~-~~~ 3901 ~|~~(~|~~~ ~~)~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~-~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~~~|~~~~ ~~~~~~~~~| 4021 ~~~~~~~~~~ ~~~~~|~~~~ |~~~~~~-~| ~~~~~--~~~ ~~~~~~~~~( ~~~~~~~~~~ 4081 )~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~|~~~~|~~ ~~~~~~~~~~ |~~~~(~~~~ 4141 ~~~~~~-)-- ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ -~~~~~~~|~ ~~~~~~~~|~ 4261 ~~~~~~~~~~ ~-|~-|~~~~ ~-~~~~~~-- ---------- --~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4381 ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~|~~~~~~~~ ~~~~~~|~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~|~~~~~- 4501 ~~~~~~~-~~ ~~~~~~~~~~ ~~~|~~~~~| ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~|~~~~~ ~|~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~||||| // LOCUS M.capricol 4759 bp RNA RNA 02-JAN-1988 DEFINITION Mycoplasma capricolum subsp. PG50. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma capricolum subsp. PG50. ORGANISM Mycoplasma capricolum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Organism information Culture collection: ?(PG50) Sequence information (bases 1 to 4759) Corresponding GenBank entry: X05075 BASE COUNT 232 a 173 c 248 g 217 t 3889 others ORIGIN 1 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~-~~~~~~~ ~~|~~~~(~~ ~~-~~-)~|- ~~~-~~~~~~ 181 ~~~~~~|-~~ ~~~(~-~~~~ ~~~-)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ------~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~-~~ ~~~~~~~~~( 481 ~~-~~~~~-- ~~)~~~-~~~ -~-~~-~~~- -~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~(-~~~~ --)~~~~~|~ ~~-~~~~~~~ ~~(~~~~~)~ 601 ~~~-~~~~~~ ~~-~~~-~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 661 ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- 721 ---~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~-~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~(~~~~~~~ )~~~~~-~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~-------- ---------- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~-~ ~~)~~~~~~~ 901 ~~~~~~~-~~ ~-~~(~~~~~ ~)~~-~~~~~ ~~~~~~~~-- -~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~-~~~~~ ~~~~~~(~~~ ~)-~~~~-~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~-)~~~~~- 1021 -~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~-~~ ~~~~~~~~~~ -~~~-~~~~~ 1081 ~~~~----(- -~~~~~~~~) --~~~--~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ 1201 ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~(~ ~~-~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~-~~~~~~~ ~~~~~~~-~~ ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~-~~~- ~~~~-~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~(~~~~) ~~-~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~( 1381 -~~~~~~~~) ~~~~~|~~~- ~~~~~~~~~~ ~~~~~~~~~~ (-~~~~~)~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (-~~~~)~~~ ~~~~|-~~~~ ~~~~~~-~~| 1501 -~~~|~~~~~ ~|~~~~~~|~ ~~~~~~~~-~ ~~~~~~~~~~ |-~~~~~(~~ ~~~)~~~~~~ 1561 ~~~~~~~~~~ -~~~~~~~~~ ~~~-~~-|~~ ~-~-~-~~~~ ~~~~--~~~| ~~~~~~~~~~ 1621 ~~~~~~--~~ ~-~~~~(~~~ ~~~)~~~~~~ ~~~~~-~~~~ ~~~(-~~~~~ ~-)~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~-~~~ ------~~~~ ~~~~~~~~-~ 1741 ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~)~ ~~~~-~~~|~ (~~~)~|~~~ 1801 ~~~(~~~~~~ )~~|~~~~~~ ~~~~~~~~~~ ~~-~~~-~~- -~~~|~~~~~ ~~~~-~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~| ~~~~~~~~~| ~~~~|~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ----~)~~~~ ~~~~~~~~~- ~~-~~~~~~~ ~|~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~-~ 2341 ~~~~~~~~~- ~-~~(-~~~~ -)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 2401 ~~|~~~-~~~ ~-~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~|~~~~-~~~ ~~~~~~~~~~ 2461 ~~~~~~-~~~ ~~~~-(~~~~ ~)~~|~-~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~(~~~~)~~~ ~~~~-~~~~~ ~~~~-~~~~~ ~~~-(~~-~~ ~~~~)~-~~~ ~|~~|~~~~- 2581 ~~-~~~-~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~------~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~------~~~ ~--~~~-~~~ ~~~~~~~~~- ~~~~-~~|~~ ~-~~~(~~~~ 2761 ~~~~~~~~~~ --)~~-~~~~ ~|~~~~---- ---------- -~~~~~~~~~ ~~~~~~~~-- 2821 ~~~~~~~-~~ ~~~~(~~-~~ ~~~)~~|~-~ ~~~~~~~~~~ ~~-----~~~ ~~~~-~~~~~ 2881 ~~~-~~~~|~ ~~~|~~~~~~ ~~~~~~~~~~ ~(~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 2941 --~~~~~-~~ ~~~~-~~~~| ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~-----~~-~ 3001 ~~~~~~--~~ ~|~|~~~~~~ ~~~~~~~~(~ ~~~~~)~~|~ ~~-~~~~~~- ~-(~~~~~)~ 3061 ~~~~~~~~~~ ||~~~~~~~~ ~~~~~~~~~- ---------- ----~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~(-~~~~)~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~(-~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~-~| ~(~~~)~~~~ ~~~~~~~-~~ 3241 ~~|~~~~~-- ---~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~(~~ ~~~~~~~~)~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~-~~ ~-~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~-~~-- (~~~~~)~~~ ~~------~~ ~~-~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 3421 |-~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~-~~ ~~~~~~~~~~ ~|~~~~~~(~ 3481 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~|~~~~~~~~ |~~~~~~~-~ GG(UGAAGAU G)CCGGUUAC CCGCAAC-UA GACGGAAAGA 3601 CCCCGUGG|A GCU-UUACUA U|AACUUGAU AUU|GAAAUU UGGUAUAACG UGUAGAGGAU 3661 AGGUGGGAGA CUGUGAGA-- CUAGGAC(GC UA)GUUCUAG UGGAGUCAAC -C-UUGGAAU 3721 ACCACC|CUC G-UUAUAUUG GAU-UUCUAA -CUUGAA--- -UCCA(--UU -AUC)-UGGA 3781 UUAAG-GACA GUGUCUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|GCCUC C(CAA-AAAG 3841 UAAC)GGAGG C|G|C|UCAA AGGUAUCC|U CAGUAUGG(U UGGAAA)UCA UACAUA-GA| 3901 GC(G|CAAAG )GUAGAAGGA UGCUUAACUG CGAGAC(UUA CAA)GUCGAA CAGAUAC(GA 3961 AA)GU-AGGA |CUUAGUGAU CCGGCGGUCC CG(UGUGGA) AGG|GCCGUC GCUCAAC|GG 4021 AUAAAAGUUA CCC|CGGG|G AUAACAG|GC UUA--UCUCC CCCAAGA(G- UUC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GAGCU(GUAG 4141 U---C)-GGU UCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGUAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-U GGU-CCCUAU -CU|GUUGUG G-G|CG-UUG 4261 GAAAAUU|GA -|AAAGAGC- UGU------- -------UCC (UAGUAC(GA GA)GGACC)G 4321 GAAUGG|AUG CACCUCUC-U GGUCCUGU|U GUCAC(GC-C A-)GUGGCA- UAGCAGGGUA 4381 GCU-AUGUGC AGAAAGGAUA AUCGCU(GAA GGCAUCUA)A GCGAGAAGCC UCCUUU|AAG 4441 AUGAAUUUUC C|CA|UUC-- -(-AUAA-)- --GAU--GU- AAGA|-UC|C CAUG-(UAGA 4501 CC-A)CAUGG -UUGAUAG|G AUGG|AUGUG -UAAGUGCU- -(GUGA-)-- GGCAU|UA-A 4561 GCUA|A|CCA UUACUAAUA- GAUCGA-GA| GAAUUU-UAG --------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS M.genitali 4759 bp RNA RNA 11-JAN-191 DEFINITION Mycoplasma genitalium. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma genitalium. ORGANISM Mycoplasma genitalium. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: U39693, U39694 LOCUS MGU39693 9199 bp DNA BCT 31-OCT-1995 DEFINITION Mycoplasma genitalium rrnA 23S, rrnA 16S genes from bases 165403 to 174601 of the complete genome. ACCESSION U39693 L43967 KEYWORDS complete genome; shotgun sequencing. SOURCE Mycoplasma genitalium (individual_isolate G37) DNA. ORGANISM Mycoplasma genitalium Eubacteria; Firmicutes; Low G+C gram-positive bacteria; Mycoplasmas and walled relatives; Mycoplasmatales; Mycoplasmataceae; Mycoplasma. REFERENCE 1 (bases 1 to 9199) AUTHORS Fraser,C.M., Gocayne,J.D., White,O., Adams,M.D., Clayton,R.A., Fleischmann,R.D., Bult,C.J., Kerlavage,A.R., Sutton,G., Kelley,J.M., Fritchman,J.L., Weidman,J.F., Small,K.V., Sandusky,M., Fuhrmann,J.L., Nguyen,D.T., Utterback,T.R., Saudek,D.M., Phillips,C.A., Merrick,J.M., Tomb,J.-F., Dougherty,B.A., Bott,K.F., Hu,P.-C., Lucier,T.S., Peterson,S.N., Smith,H.O., Hutchison,C.A. III and Venter,J.C. TITLE The minimal gene complement of Mycoplasma genitalium JOURNAL Science 270 (5235), 397-403 (1995) REFERENCE 2 (bases 1 to 9199) AUTHORS Fraser,C.M., Gocayne,J.D., White,O., Adams,M.D., Clayton,R.A., Fleischmann,R.D., Bult,C.J., Kerlavage,A.R., Sutton,G., Kelley,J.M., Fritschman,J.L., Weidman,J.F., Small,K.V., Sandusky,M., Fuhrmann,J.L., Nguyen,D.T., Utterback,T.R., Saudek,D.M., Phillips,C.A., Merrick,J.M., Tomb,J.-F., Dougherty,B.A., Bott,K.F., Hu,P.-C., Lucier,T.S., Peterson,S.N., Smith,H.O., Hutchinson,C.A. III. and Venter,J.C. TITLE Direct Submission JOURNAL Submitted (30-OCT-1995) The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA COMMENT Address all correspondence to: Claire M. Fraser The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850 All authors are with: The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD, 20850 Except: J.M. Merrick, Department of Microbiology, State University of New York at Buffalo, Buffalo, NY, USA K.F. Bott, P.-C. Hu, T.S. Lucier, S.N. Peterson, C.A. Hutchison, University of North Carolina at Chapel Hill, School of Medicine, Chapel Hill, NC, 27599, USA The coding potential of some predicted open reading frames were determined using GeneMark software, kindly supplied by Mark Borodovsky, Georgia Institute of Technology, Atlanta, GA, 30332. e-mail: mark@amber.gatech.edu Submitted by: Claire M. Fraser e-mail: cmfraser@tigr.org Annotation: Owen White e-mail: owhite@tigr.org Biological role information, putative identifications, sequence alignments, on-line name and sequence search capability are available at TIGR's World Wide Web site: (URL: http://www.tigr.org/) Records for each member of the set which constitute the complete genome of Mycoplasma genitalium were derived by splitting the original single 580 kb submission into records of approximately 10 to 20 kb in size. Any questions about this process can be directed to GenBank/NCBI: info@ncbi.nlm.nih.gov. NCBI gi: 1045820 FEATURES Location/Qualifiers source 1..9199 /organism="Mycoplasma genitalium" /isolate="G37" /sequenced_mol="DNA" CDS 68..1777 /standard_name="MG139" /note="identified by sequence similarity; similar to GB:L18927 {Buchnera aphidicola} percent identity: 28.6; putative; NCBI gi: 1045821" /codon_start=1 /transl_table=4 /product="hypothetical protein (GB:L18927_2)" /translation="MIKDFNPGDFIGKKPTKIYAFGGIQEVGKNMYGIEYDDEIIIID CGIKFASDDLLGINGIIPSFEHLIENQSKVKALFITHGHEDHIGGVPYLLKQVDIPVI YAPRIAASLILKKVNEHKDAKLNKIVTFDDFSEFQTKHFKIDFYRVNHSIPDAFGICV QTPNGNIVQSGDYRFDFAAGSEMLDVHKVVKIAERNVHVFMSESTNAEVPGFSQSEKL IYRNIQKILKEARGRVILTTFASNITRINEIIEIALNNKRKICLLGKSMDVNVNISRK IGLMAIDSNDIVEVRDIKNYPDRNILILCTGSQGEEAAALNTMARGKHNWVSLKSTDT IIMSSNPIPGNYAAVENLLNELSKFGVAIYENSSQLKLHASGHATQQELQLMLNLMFP KYLIPIHGEFKMMRTIKNIANECGIKSEDVALLSNGQVMYLIDEELYYSNEIINADPI YIESHNSSPDLARIIKQRQILSRDGMFAVIVVFDKNNNIIGIPTLITRGCFFALDSNP LMTKIAHSVKRTLESVIQSKKFNSHEQLTKELKRVCKETVSYFIWKNKNRNPLISTVL SWI" rRNA 4607..6125 /gene="rrnA 16S" /note="putative" /product="16S rRNA" rRNA complement(6328..9061) /gene="rrnA 23S" /note="putative" /product="23S rRNA" BASE COUNT 2906 a 1664 c 2101 g 2528 t ORIGIN BASE COUNT 875 a 516 c 800 g 726 t 1842 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- -------ACA AUAAGUUAC- --UAAGGGCU UAUGGUGGAU 121 G|CCUUGG|C ACUAAA|AG| GC-GAUGAAG GA|CGUG(UU AA-CC-)U|- GCG-AUAAGC 181 UUCGGG|-GA GGU(G-GU-A AAA-)ACCUG AG-AUC-CGG AGGUG|UCCG AAUGGA(GCA 241 A)UCU|GGUA GCUU(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----GCAA)A AGUUACC-AU UA-AUUAAU( 481 GA-AUUCA-- UA)GUU-AAU -U-A-AA-G- CGAUAC|GU- GGUGAAGU|G A(AACA)UCU 541 CAGUA-ACCA CAGGAAAAGA AAAC(-GAAU --)GUGAU|U CC-GUGUGUA GU(GGCGA)G 601 CGA-AAG-CG GA-ACA-GGC CAAAccuauc ---------- -----(ugag -)-------- 661 ------gaua gggguuguag ggcuugcauu ---------- ---------- ---------- 721 ---------- -auggaaguu aaaaggau-a gaaGAAg-cu g-u(u-ggaa a)g-cagcgc 781 |c(aaa)gaG GG(UGAUAGC )CCCGU-Auu u-gaaaucuu uuuaauaccu ---------- 841 ---------- ---agcaaga aaccu---GA GUAGCUCGAA A(AACGUU-A --)UUUUGAG 901 UGAAUCU-GC C-CA(GACCA U)UG-GGU-A AGCCUAA--- -AUACUAAUU AGUGACCGAU 961 AGCG-AAA-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G AACCCA(GA- GA-)UGGGA- 1021 -GUGAAA-UA GAUUCUGAAA CCAU-AUGCC UACAA-C-GU GUCAGAGCAC --A------- 1081 --------(- ---uuaa--) ---------- -----U-GUG UGAUGGCGUG CGU(UUU-GA 1141 AG|U)AUGA| -GCCGGCGAG UUAU-GAUA- GCAAGCguuA GUUAACCA-( -ggaga)-UG 1201 G-GGAGCUGU AGC(GAAA-) GCGAGUUU(U AA-GA)GAGC GU-------- ---------- 1261 ---------- --------uu G-UUUGUUAU CAUA-GACCC GAAAC-GGG- UUGA-GCUAG 1321 UCAUGAG|CA GGUUGAAGGU UGAG(UAAC) AU-UAACUGG AGGACCGAAC C-GACUCUC( 1381 -GUUGAAAC) GAUAG|CGG- AUGAC-UUGU GAUUAGGGGU (-GAAAU)UC CAAUCGAAAU 1441 CCGUGAUAGC UGGUUCUCGU CGAAAUAGCU (-UUAA)GGC UAGC|-GUAA GAuca--ca| 1501 -aau|aaGUG G|AGGUAA|A GCUACUGA-A UGUAUGA-UG |-GCGCC(ac cua)GGCGUA 1561 CUGAAUACAA -UUAAACUCU GAA-UG-|cc a-u-u-u--- auuu----u| auucuugcAG 1621 UCAGAC--AG U-GGGG(GAU AAG)CUUCAU -UGUC-AAGA GGG(-GAAGA G-)CCCAGAU 1681 CAUUAAAUAA G-GU|CCCC- AAA-A-UAUA -C-UAA-GUG ------GAAA AGGAUGUG-A 1741 AAGUGCUAA- AACAGCAAGG AUGUUGGC(U UAGAAGCA)G CCAU-CGU|U (UAA)A|GAG 1801 UGC(GUAACA )GC|UCACUU GU-----CGA GU-GUU-UU- -UGC|GCCGA AGAU-GUAA- 1861 CGGGGCU-AA GUAUA-U|U| ACCGAAUUU| AUGG|auaag aua----(uu uu-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -uaucuugu- GG-UAGACGA G|-----CGU 2221 U-GUA-UU-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GAGU-U 2341 GAAGUCA-A- A-GC(-GUGA -)GCA--UUG GUGG|AUCCA A-UACAAGUG AGAAUGC-CG 2401 GC|GUG-AGU A--ACGCU-- UGGGAG(UGA GAAU)CUCCC A|AACC-GAU UGACUAAGGU 2461 UUCCUG-GAC CAGG-(GUCG U)CC|U-UCC AGGGUUAGU| CUG|G-ACCU AAGCUGAGGC 2521 U(GAAG)-A- GCGU-AGGCG AUGG-ACAAC AGG-(UU-AA UAUU)C-CUG U|AC|uu-a- 2581 ca--gu-uag a--------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------cuga u------gga g--uga-caa agaagguua- u-cc-ac|cc c-cau(uau- 2761 -uggau---- --)uu-gggg -|auaa---- ---------- ---acca-ua aggug----- 2821 ---guac-aa uagg(ca-aa -u-)cc|g-- uugugcaua- ---------a cacu-gagug 2881 gug-augu|c ga-|------ ---gugaacg a(-guga--) ucaaguagc- ------gaag 2941 -guggcaauu aauc-aug-| cuuucaagaa a-agcugc-u a-gggcua-- -----auu-u 3001 -aacug--ua a|C|CAGUAC CGAGAACG(A ACACA)CG|U AG-UCAAGG- A-(GAGGA)U 3061 CCUAAGGUUA ||GCGAGUGA ACUAUAGCC- ---------- ----AAGGAA CUCUGCAAAU 3121 UAACCCCGUA AG(-UUAG)C GAGAAGGGGU |gcuuau--- ---------- ---------- 3181 c(-uaaa-)a ---------- ---------- --guaag-C| C(GCA)GUGA AGAACGA-GG 3241 GG|GGACU-- ---GU(UUAA CUAAA)ACAC AACUCUAUG| CCAAACC(GU AA------)G 3301 GUGAUGU-AU AUGGGGUGA- CACCUGCCCA GU|GCUG-GA A-GGUUAAAG AAGGAGGUUA 3361 GCaa------ (U-UUA)--- ------uuGC AA-AGCUUUU AACUGAAGCC |CCAGUGAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU A|GUCGGG(U 3481 AAAU)UCCGU C|CCGCUUGA AUGGUGUAAC CA-UCUCUUG ACUGUCUCGG CUAUAGACUC 3541 G|GUGAAAUC |CAGGUAC-G GG(UGAAGAC A)CCCGUUAG GCGCAAC-GG GACGGAAAGA 3601 CCCCGUGA|A GCU-UUACUG U|AGCUUAAU AUU|GAUCAA AACACCACCA UGUAGAGAAU 3661 AGGUAGGAGC AAUUGAUG-- CAAGUUC(GC AA)GGAUUUG UUGAUGUGAA AU-GUGGAAU 3721 ACUACC|CUU G-GUUAUGUU UUG-UUCUAA -UUGGUA--- -ACUG(--UG -AUC)-CAGU 3781 UUCAA-GACA GUGUUAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAGG 3841 UAAC)GGAGG C|G|C|ACAA AGGUACCU|U CAGUACGG(U UGGAAA)UCG UAUUUA-GA| 3901 GU(G|UAAUG )GUAUAAGGG UGCUUGACUG UGAGAC(UUA CAG)GUCGAA CAGGUGA(GA 3961 AA)UC-AGGU |CAUAGUGAU CCGGUGGUUC AG(UAUGGA) AUG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CUC|CGGG|G AUAACAG|GC UGA--UACUG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCA-GU GU-UUGGCAC CUCGAUGUC| GACU|C|AUC UC|AUCC|UC GAGCU(GAAG 4141 C---A)-GGU UCGAAGGGU| UCGGC(UGUU C)GC-CGAUU AAAGAGAUAC G-UGAGUUGG 4201 GUUCA-AACC |GUC(GUGA) -GACAGGU-U GGU-CCCUAU -CU|AUUGUG C-C|CA-CAG 4261 GAAGAUU|GA -|AGAGCUU- UGC------- -------UUC (UAGUAC(GA GA)GGACC)G 4321 GAGCGA|GGA CACCGCUUAU GCUCCAGU|U GUAGC(GC-C A-)GCUGCA- CCGCUGGGUA 4381 GUA-ACGUGU CUAUUAGAUA AACGCU(GAA AGCAUCUA)A GUGUGAAACU AUCUCA|AAG 4441 AUUAAUCUUC C|CA|UUUCU -(guuaaa)- GGAAA--GU- AAGA|-GC|C GUUA-(UAGA 4501 CC-A)UGACG -UUGAUAG|G UUAC|AGGUG -UAAGCAUA- -(GUGA-)-- UAUGU|UG-A 4561 GCUG|A|GUA AUACUAAUU- GCUCGA-GG| ACUUAU-UGG U-------|- ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS M.pneumoni 4759 bp RNA RNA 11-JAN-191 DEFINITION Mycoplasma pneumoniae. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma pneumoniae. ORGANISM Mycoplasma pneumoniae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X68422,U00089 ID MP23SRRN standard; DNA; PRO; 2905 BP. XX AC X68422; XX DT 29-MAR-1993 (Rel. 35, Created) DT 29-MAR-1993 (Rel. 35, Last updated, Version 2) XX DE M.pneumoniae gene for 23S rRNA XX KW 23S ribosomal RNA. XX OS Mycoplasma pneumoniae OC Prokaryota; Bacteria; Tenericutes; Mollicutes; Mycoplasmas; OC Mycoplasmatales; Mycoplasmataceae. XX RN [1] RP 1-2905 RA Ludwig W.; RT ; RL Submitted (08-SEP-1992) on tape to the EMBL Data Library by: RL W. Ludwig, Lehrst. fuer Mikrobiologie TU Muenchen, Arcisstr. 21, RL 8000 Muenchen 2, FRG XX RN [2] RP 1-2905 RA Ludwig W., Kirchof G., Klugbauer N., Weizenegger M., Betzl D., RA Ehrmann M., Hertel C., Jilg S., Tatzel R., Zitzelsberger H., RA Liebl S., Hochberger M., Shah J., Lane D., Wallnoef P.R.; RT "Complete 23S ribosomal RNA sequences of Gram-positive Bacteria RT with a low DNA G+C content"; RL Syst. Appl. Microbiol. 15:487-501(1992). XX FH Key Location/Qualifiers FH FT rRNA 1..2905 FT /product="23S ribosomal RNA" XX SQ Sequence 2905 BP; 865 A; 516 C; 806 G; 718 T; 0 other; BASE COUNT 865 a 516 c 806 g 718 t 1854 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------CA AUAAGUUAC- --UAAGGGCU UAUGGUGGAU 121 G|CCUUGG|C ACUAAU|AG| GC-GAUGAAG GA|CGUG(UU AA-CC-)U|- GCG-AUAAGC 181 UUCGGG|-UA GGU(G-GU-A AGA-)ACCUC AG-AUC-CGG AGAUU|UCCG AAUGGA(GCA 241 A)UCC|GGUA GUUG(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----gaaa)C AGCUAUC-AU UA-AUUGAU( 481 GA-AUAAA-- UA)GUC-AAU -U-A-AA-G- CAAUAC|GU- GGUGAAGU|G A(AACA)UCU 541 CAGUA-GCCA CAGGAAAAGA AAAC(-GAAU --)GUGAU|U CC-GUGUGUA GU(GGCGA)G 601 CGA-AAG-CG GA-ACA-GGC CAAAcuuauc ---------- -----(auua -)-------- 661 ------gaua gggguuguag ggcuugcaau ---------- ---------- ---------- 721 ---------- -guggacuug aaaacgau-a gaaGAAg-cu g-u(u-ggaa a)g-cagcgc 781 |g(caa)aaG GG(UGAUAGC )CCCGU-Auu u-gaaauugu uuucauaccu a--------- 841 ---------- ----gcgaga ucccu---GA GUAGCUCGGA A(AACGUU-A --)UUUUGAG 901 UGAAUCU-GC C-CA(GACCA U)UG-GGU-A AGCCUAA--- -AUACUAAUU AGUGACCGAU 961 AGCG-AAA-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G AACCCA(GA- GA-)UGGGA- 1021 -GUGAAA-UA GAUUCUGAAA CCAU-AUGCC UACAA-C-GU GUCAGAGCAC --A------- 1081 --------(- ---uuaa--) ---------- -----U-GUG UGAUGGCGUG CGU(UUU-GA 1141 AG|U)AUGA| -GCCGGCGAG UUAU-GAUA- GCAAGCguuA GUUAACCa-( -ggaga)-uG 1201 G-GGAGCUGU AGC(GAAA-) GCGAGUUU(U AA-AA)GAGC GU-------- ---------- 1261 ---------- --------uu G-UUUGUUAU UAUA-GACCC GAAAC-GGG- UUGA-GCUAG 1321 UCAUGAG|CA GGUUGAAGGU UGAG(UAAC) AU-CAACUGG AGGACCGAAC C-GACUCUC( 1381 -GUUGAAAC) GAUAG|CGG- AUGAC-UUGU GAUUAGGGGU (-GAAAU)UC CAAUCGAAAU 1441 CCGUGAUAGC UGGUUCUCGU CGAAAUAGCU (-UUAA)GGC UAGC|-GUGA GAuca--ca| 1501 -aau|AAGUG G|AGGUAA|A GCUACUGA-A UGUAUGA-UG |-GCGCC(ac cua)GGCGUA 1561 CUGAAUACAA -UUAAACUCU GAA-UG-|cc a-u-u-u--- auuu----u| auucucgcAG 1621 UCAGAC--AG U-GGGG(GAU AAG)CUUCAU -UGUC-AAGA GGG(-GAAGA G-)CCCAGAU 1681 CAUUAAAUAA G-GU|CCCC- AAA-A-UAUA -C-UAA-GUG ------GAAA AGGAUGUG-A 1741 AAGUGCUAA- AACAGCAAGG AUGUUGGC(U UAGAAGCA)G CCAU-CGU|U (UAA)A|GAG 1801 UGC(GUAACA )GC|UCACUU GU-----CGA GU-GUU-UU- -UGC|GCCGA AGAU-GUAA- 1861 CGGGGCU-AA GUAUA-U|U| ACCGAAUUU| AUGG|auaag au-----(uu au-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- --aucuugu- GG-UAGACGA G|-----CGU 2221 U-GUA-UU-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --G-GAGU-U 2341 GAAGUCA-A- A-GC(-GUGA -)GCA--UUG GUGG|AUCCA A-UACAAGUG AGAAUGC-CG 2401 GC|AUG-AGU A--ACGCU-- UGGGAG(UGA GAAU)CUCCC A|AACC-GAU UGACUAAGGU 2461 UUCCUG-GAC CAGG-(GUCG U)CC|U-UCC AGGGUUAGU| CUG|G-ACCU AAGCUGAGGC 2521 U(GAAA)-A- GCGU-AGGCG AUGG-ACAAC AGG-(UU-AA UAUU)C-CUG U|AC|uu-a- 2581 ca--gu-uag a--------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------cuga u------gga g--uga-caa agaagguuu- u-cc-ac|cc c-cau(aau- 2761 -uggau---- --)uu-gggg -|auaa---- ---------- ---auca-ua aggug----- 2821 ---guac-aa uagg(ca-aa -u-)cc|g-- uugugcaua- ---------a cauu-gagug 2881 aug-augu|c ga-|------ ---gugaaug a(-guga--) ucaaguagc- ------gaag 2941 -guggua-uu aauc-aug-| cuuucaagaa a-agcuuc-u a-ggguua-- -----auc-u 3001 -agcug--ua a|C|CAGUAC CGAGAACG(A ACACA)CG|U AG-UCAAGG- A-(GAGGA)U 3061 CCUAAGGUUA ||GCGAGUGA ACUAUAGCC- ---------- ----AAGGAA CUCUGCAAAU 3121 UAACCCCGUA AG(-UUAG)C GAGAAGGGGU |gcuuau--- ---------- ---------- 3181 g(-uaaa-)a ---------- ---------- --guaag-C| C(GCA)GUGA AGAACGA-GG 3241 GG|GGACU-- ---GU(UUAA CUAAA)ACAC AACUCUAUG| CCAAACC(GU AA------)G 3301 GUGAUGU-AU AUGGGGUGA- CACCUGCCCA GU|GCUG-GA A-GGUUAAAG AAGGAGGUUA 3361 GC-------- (G-CAA)--- --------GC GA-AGCUUUU AACUGAAGCC |CCAGUGAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU A|GUCGGG(U 3481 AAAU)UCCGU C|CCGCUUGA AUGGUGUAAC CA-UCUCUUG ACUGUCUCGG CUAUAGACUC 3541 G|GUGAAAUC |CAGGUAC-G GG(UGAAGAC A)CCCGUUAG GCGCAAC-GG GACGGAAAGA 3601 CCCCGUGA|A GCU-UUACUG U|AGCUUAAU AUU|GAUCAG GACAUUAUCA UGUAGAGAAU 3661 AGGUAGGAGC AAUCGAUG-- CAAGUUC(GC UA)GGACUUG UUGAUGCGAA AG-GUGGAAU 3721 ACUACC|CUU G-GUUGUGUG CUG-UUCUAA -UUGGUA--- -ACUG(--UU -AUC)-CAGU 3781 UUCAA-GACA GUGUUAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAGG 3841 UAAC)GGAGG C|G|U|ACAA AGGUACCU|U CAGUACGG(U UGGAAA)UCG UAUGUA-GA| 3901 GU(G|UAAUG )GUGUAAGGG UGCUUGACUG UGAGAC(AUA CAG)GUCGAA CAGGUGA(GA 3961 AA)UC-AGGU |CAUAGUGAU CCGGUGGUCC AG(UAUGGA) AUG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CUC|CGGG|G AUAACAG|GC UGA--UACUG CCCAAGA(G- UUC-AUA)UC 4081 GACGGCA-GU GU-UUGGCAC CUCGAUGUC| GACU|C|AUC UC|AUCC|UC GAGCU(GAAG 4141 C---A)-GGU UCGAAGGGU| UCGGC(UGUU C)GC-CGAUU AAAGAGAUAC G-UGAGUUGG 4201 GUUCA-AACC |GUC(GUGA) -GACAGGU-U GGU-CCCUAU -CU|AUUGUG C-C|CG-UAG 4261 GAAGAUU|GA -|AGAGUGU- UGC------- -------UUC (UAGUAC(GA GA)GGACC)G 4321 AAGCGA|GGA CACCUCUUAU GCUCCAGU|U GUAGC(GC-C A-)GCUGCA- CCGCUGGGUA 4381 GUA-ACGUGU CUAUUAGAUA AACGCU(GAA AGCAUCUA)A GUGUGAAACU AUCUCA|AAG 4441 AUUAAUCUUC C|CA|UUUC- -(-GCAA-)- -GAAA--GU- AAGA|-GC|C GUCA-(AAGA 4501 CG-A)UGACG -UUGAUAG|G UUAC|AGGUG -UAAGCAUA- -(GUGA-)-- UAUGU|UG-A 4561 GCUG|A|GUA AUACUAAUU- GCUCGA-GG| ACUUAU-UGG A-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS M.gallis.1 4759 bp RNA RNA 11-JAN-191 DEFINITION Mycoplasma gallisepticum. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma gallisepticum. ORGANISM Mycoplasma gallisepticum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: L08897 LOCUS MYCRRSA 6663 bp ds-DNA BCT 16-AUG-1994 DEFINITION Mycoplasma gallisepticum (strain A5969) 16S-, 23S-, 5S ribosomal RNA (rrsA, rrlA, rrfA) genes. ACCESSION L08897 KEYWORDS 16S ribosomal RNA; 23S ribosomal RNA; 5S ribosomal RNA; ribosomal RNA. SOURCE Mycoplasma gallisepticum (sub_strain variant B, strain A5969) (library: genomic library lambda EMBL-3A) DNA. ORGANISM Mycoplasma gallisepticum Prokaryotae; Tenericutes; Mollicutes; Mycoplasmas; Mycoplasmatales; Mycoplasmataceae. REFERENCE 1 (bases 1 to 6663) AUTHORS Skamrov,A. and Beabealashvilli,R.S. TITLE Mycoplasma Gallisepticum strain S6 contains three regions hybridizing with 16S rRNA and two regions hybridizing with 23S and 5S rRNA JOURNAL FEBS Lett. 291, 71-74 (1991) STANDARD full automatic REFERENCE 2 (bases 1 to 6663) AUTHORS Scamrov,A., Goldman,M., Klassova,J., Feoktistova,E. and Beabealashvilli,R.S. TITLE Mycoplasma gallisepticum rRNA operon structure JOURNAL Unpublished (1994) STANDARD full automatic REFERENCE 3 (bases 1 to 6663) AUTHORS Scamrov,A., Klassova,J., Goldman,M., Feoktistova,E. and Beabealashvilli,R.S. TITLE Nucleotide sequence of rrnA operon of M. gallisepticum A5969 var. B JOURNAL Unpublished (1994) STANDARD full automatic COMMENT NCBI gi: 530152 FEATURES Location/Qualifiers source 1..6663 /organism="Mycoplasma gallisepticum" /sub_strain="variant B" /strain="A5969" /sequenced_mol="DNA" /tissue_lib="genomic library lambda EMBL-3A" CDS 3..500 /partial /note="putative; ORF; NCBI gi: 530153" /codon_start=1 /citation=[2] /citation=[3] /translation="IYWYVPLIAFSYSSIVYLLFGFGLNNIFLINLFNIQGADNLVVS NLVLRITLVQSIFIALSMNAQLLFQSTQRIGMAWIASLMQGLFTFAPVFFTMYNLAID TNNIYLYIWIQPINAILTCIGNWIISIPFAHKYREFVSKRFDIGTMLDKYLNKTKNPK VKAKQ" -35_signal 430..435 /note="single mismatch of E.coli consensus sequence; putative" /citation=[2] /citation=[3] -10_signal 453..458 /note="single mismatch of E.coli consensus sequence; putative" /citation=[2] /citation=[3] -35_signal 518..523 /note="single mismatch of E.coli consensus sequence; putative" /citation=[2] /citation=[3] -10_signal 539..544 /note="putative" /citation=[2] /citation=[3] repeat_unit 585..612 /note="5' half of the stem structure bracketing 16S and 23S ribosomal RNA.; putative" /function="rRNA processing" /rpt_type=direct /citation=[2] rRNA 619..2137 /gene="rrsA" /standard_name="16S rRNA" /note="putative" /function="ribosomal small subunit RNA" /citation=[1] /citation=[2] /product="16S ribosomal RNA" repeat_unit 2256..2289 /note="3' part of a stem bracketing 16S and 23S rRNA; putative" /function="rRNA processing" /rpt_type=inverted /citation=[2] /citation=[3] misc_signal complement(2373..2391) /standard_name="boxA" /note="GTTCTTT loop bracketed by a stem; putative" /function="antitermination" /label=boxA /citation=[2] stem_loop 2435..2493 /note="Stem-loop followed by a row of T's; putative" /function="putative transcription terminator" /citation=[2] repeat_unit 2676..2706 /note="5' half of a stem bracketing 16S and 23S rRNA; putative" /function="rRNA processing" /rpt_type=direct /citation=[2] /citation=[3] -35_signal 2724..2730 -10_signal 2748..2753 rRNA 2795..5696 /gene="rrlA" /standard_name="23S rRNA" /note="putative" /function="ribosomal large subunit RNA" /citation=[1] /citation=[2] /product="23S ribosomal RNA" stem_loop 5680..5755 /note="stem-loop followed by a row of T's; putative" /function="putative transcription terminator" /citation=[2] repeat_unit 5737..5767 /note="3' half of a stem bracketing 16S and 23S rRNA; putative" /function="rRNA processing" /rpt_type=inverted /citation=[2] /citation=[3] misc_signal 5749..5776 /standard_name="boxA" /note="GTTCTTT loop bracketed by a stem; putative" /function="antitermination" /label=boxA /citation=[2] misc_signal 5756..5767 /standard_name="boxC" /note="(GT)n sequence situated in a close vicinity of boxA of antiterminator structure; putative" /function="antitermination" /label=boxC /citation=[2] rRNA 5770..5881 /gene="rrfA" /standard_name="5S rRNA" /note="putative" /function="ribosomal RNA" /citation=[1] /citation=[2] /product="5S ribosomal RNA" stem_loop 5878..5911 /note="stem-loop followed by a row of T's; putative" /function="putative transcription terminator" /citation=[2] CDS 6211..6663 /partial /note="putative; NCBI gi: 530154" /codon_start=1 /function="unknown" /citation=[2] /citation=[3] /product="orf" /translation="MKKYFKIINVTRRQLALFLVYLATLLFASAGIITIMTYGIAFPG GNNFVIYNENFFKTSLILPLVFFVIFAISGLVILLTGKETYKFDHKLIYQNYKFKLIL SLIEIIQAIAWVFFLGILIVYFYPIDKTISQVYQDQIASVDFANANIRS" BASE COUNT 2085 a 1131 c 1506 g 1941 t ORIGIN BASE COUNT 876 a 526 c 796 g 717 t 1844 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- ------auac auAAGUUAC- --UAAGGGCU UAUGGUGGAU 121 G|CCUUGG|C ACUAGA|AG| GC-GAUGAAG GA|CGUG(CA AA-CC-)U|- GCG-AAAUGC 181 UACGGG|-GA GCU(G-GU-U GGA-)AGCGA UA-AUC-CGU AGAUG|UCCG AAUGGG(GGA 241 A)CCU|GAUU AAUa(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----guga)u AUUAAUC-AU UU-AGAUCU( 481 GA-AUACA-- UA)GGG-UCU -A-A-AA-G- CAAUAC|GU- UGUGAAGU|G A(AACA)UCU 541 CAGUA-GCAA CAGGAAAAGA AAUC(-GAAA --)GAGAU|U CC-GUGUGUA GU(GGCGA)G 601 CGA-AAG-CG GA-ACA-GGC CAAAccaaga ---------- -----(uuua -)-------- 661 ------ucuu gggguuauag gacugcaaug ---------- ---------- ---------- 721 ---------- --uggacuuu gaacugau-a ggaGAAg-ua g-u(u-gaaa a)g-cuacgc 781 |g(aua)aaG GG(UUAUAGC )CCCGU-Auc u-uaaauugg uuuaauaccu ---------- 841 ---------- ----agcagg auccu---GA GUACAUCGAG A(AACGUU-A --)UCUUGAU 901 GGAAGUC-GC C-CA(GACCA U)UG-GGC-A AGCCUAA--- -AUACUAACU AGUGACCGAU 961 AGCG-UA--U AGUACC(GUG A)-GGGA-AA GGUGAAAA-G AACCCA(GG- GA-)UGGGA- 1021 -GUGAAA-UA GAUUCUGAAA CCAU-AUGCC UACAA-C-GU GUCAGAGCAC --A------- 1081 --------(- ---uuaa--) ---------- -----U-GUG UGAUGGCGUG CGU(UUU-GA 1141 AG|U)AUGA| -GCCGGCGAG UUAU-GAUA- GCAAGC--AG GUUAACCuu( ---uag)aaG 1201 G-GAAGCCGA AGC(GAAA-) GCGAGUUU(G AA-UA)GAGC GA-------- ---------- 1261 ---------- -auuaaa-gu G-UUUGUUAU UAUA-GACCC GAAAC-GGG- UUGA-GCUAG 1321 UCAUGGG|CA GGUUGAAGUU AGAG(UAAC) AU-CUAAUGG AGGACCGAAC C-GACUUUC( 1381 -GUUGAAAC) GACAG|CGG- AUGAC-CUGU GACUAGGGGU (-GAAAU)UC CAAUCGAAAU 1441 CCGUGAUAGC UGGUUCUCGU CGAAAUAGUU (-UUAA)GAC UAGC|-GUAA GAuca--ug| 1501 -auc|aaCUG G|AGGUAG|A GCUACUGA-A UGUAUGA-UG |-GCGCC(gc cuu)GGUGUA 1561 CUGAAUACAA -UUAAACUCC GAA-UG-|cc a-a-u-u--- gauu----u| auucuugcAG 1621 UCAGAC--AG U-GGGG(GAU AAG)CUUCAU -UGUC-ACAA GGG(-GAAGA G-)CCCAGAU 1681 CAUUAAAUAA G-GU|CCCU- AAA-A-UAUG -C-UAA-GUG ------GAAA AGGUUGUU-A 1741 AAAUACUUA- AACAGCAAGG AUGUUGGC(U UAGAAGCA)G CCAU-CGU|U (UAA)A|GAG 1801 UGC(GUAACA )GC|UCACUU GU-----CGA GU-GUU-UU- -UGC|GCCGA AGAU-GUAA- 1861 CGGGGCU-AA GCAUA-U|U| ACCGAAUUU| AUGG|auuau uauuc--(gu aa-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---g aaugauagu- GG-UAGACGA G|-----CGU 2221 U-GUA-UA-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-GGGA-U 2341 GAAGUCA-A- A-CC(-GUGA -)GGA--UUG GUGG|ACUGU A-UACAAGUG AGAAUGC-CG 2401 GU|GUA-AGU A--ACGCU-- UGAGAG(UGA GAAU)CUCUC A|AACC-GAU UGACUAAGGU 2461 UUCCUG-GAC GAGG-(GUCG U)CC|U-UCC AGGGUUAGU| CUG|G-ACCU AAGGCGAGGC 2521 A(GAAA)-U- GCGU-AGUCG AUGGAAGAAC AGG-(UU-AA UAUU)C-CUG U|AC|aa-a- 2581 ca--aa-uag ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------cuga u------gga g--uga-cgg agaagguua- augc-au|cc c-cau(uau- 2761 -cggau---- --)uu-gggg -|uuaa---- ---------- ---auaa-ga agucu----- 2821 ---uaag-gg uugg(ca-aa -u-)cc|g-- ccuuuuuua- ---------a ggag-aacuu 2881 aug-aaua|c ga-|------ -----gugaa c(-gcuuu-) g-caaguagc ------gaag 2941 -augcau--a cauc-acg-| cuuccaagaa a-agcuuc-u a-ggguua-- -----a-c-u 3001 -auuug--uu u|C|CAGUAC CGAGAACG(A ACACA)CG|U GG-UCAAGG- A-(GAAGA)U 3061 CCUAAGGUUA ||GCGAGUGA ACUAUAGCU- ---------- ----AAGGAA CUCUGCAAAU 3121 UCAUCCCGUA AG(-UUCG)C AAGAAGGGAU |gcucaau-- ---------- ---------- 3181 g(-uaac-)a ---------- ---------- -guugag-C| C(GCA)GUGA AGAACGA-GG 3241 GG|GGACU-- ---GU(UUAA CUAAA)ACAC AGCUCUAUG| CUAAAUC(GC AA------)G 3301 AUGAUGU-AU AUGGGGUGA- CACCUGCCCA GU|GCUG-GA A-GGUUAAAG AAGGGUGUUA 3361 GA-------- (G-CAA)--- --------UC AA-AGCUCCC GACUGAAGCC |CCAGUGAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAAU)UCCGU C|CCGCUUGA AUGGUGUAAC CA-UCUCUUG ACUGUCUCGG CUAUAGACUC 3541 G|GUGAAAUC |CAGGUAC-G GG(UGAAGAC A)CCCGUUAG GCGCAAC-GG GACGGAAAGA 3601 CCCCAUGA|A GCU-UUACUG U|AACUUAAU AUU|GGGCAG AGUUUAGACA UAUAGAGAAU 3661 AGGUGGGAGA CUUUGAAG-- CAACUUC(GC UA)GGAGUUG UGGAGUCACC -A-GUGGAAU 3721 ACCACC|UUU G-UUUAAAUU CUU-CUCUAA -CUAGUU--- -GCUG(--UU -AUC)-CAGC 3781 AAUAG-GACA GUGUUAGGCG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(CAA-AAGG 3841 UAAC)GGAGG C|G|U|GCAA AGGUACCC|U CAGCACGG(U UGGAAA)UCG UGUUAA-GA| 3901 GU(G|UAAUG )GUAUAAGGG UGCUUGACUG UGAGAC(UAA CAG)GUCGAA CAGGUAA(GA 3961 AA)UU-AGGU |CAUAGUGAU CCGGUGGUUC AG(UAUGGA) AUG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CUC|UGGG|G AUAACAG|GC UGA--UACUG CCCAAGA(G- UUC-ACA)UC 4081 GACGGCA-GU GU-UUGGCAC CUCGAUGUC| GACU|C|AUC UC|AUCC|UC GAGCU(GAAG 4141 C---A)-GGU UCGAAGGGU| UCGGC(UGUU C)GC-CGAUU AAAGAGAUAC G-UGAGUUGG 4201 GUUCA-AACC |GUC(GCGA) -GACAGGU-U GGU-CCCUAU -CU|AUUGUG C-C|CG-CAG 4261 GAAGAUU|GA -|AAAGAUU- UAC------- -------UCU (UAGUAC(GA GA)GGACC)G 4321 GAGUGA|AGA CACCUCUUGU GCUCCAGU|U GUAGC(GC-C A-)ACUGCA- CCGCUGGGUA 4381 GCA-ACGUGU CGAACGGAUA AACGCU(GAA AGCAUCUA)A GUGUGAAACC GACUUU|AAG 4441 AAUAAUCUUC C|CU|UCCA- -(-GCAA-)- -UGGA--GU- AAGA|-AU|C GUUG-(UAGA 4501 CU-A)CGACG -UUGAUAG|G CUAA|AGGUG -UAAGUGCC- -(GCGA-)-- GGUAU|UU-A 4561 GCUG|A|UUA GUACUAAUA- AUUCGA-GG| ACUUA].gau uuga----|- -~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS M.gallis.2 4759 bp RNA RNA 12-JAN-1998 DEFINITION Mycoplasma gallisepticum. str. L18 (rpl18), S5 (rps5), L15 (rpl15), secretion protein Y (secY), adenylate kinase (adk), methionine aminopeptidase (map), and lactate dehydrogenase (ldh) genes, complete cds A5969var.B ribosomal proteins S10 (rps10), L3 (rpl3), L4 (rpl4), L23 (rpl23), L2 (rpl2), S19 (rps19), L22 (rpl22), S3 (rps3), L16 (rpl16), L29 (rpl29), S17 (rps17), L14 (rpl14), L24 (rpl24), L5 (rpl5), S14 (rps14), S8 (rps8), L6 (rpl6),; . ACCESSION AF0367 8 KEYWORDS . SOURCE Mycoplasma gallisepticum. str. L18 (rpl18), S5 (rps5), L15 (rpl15), secretion protein Y (secY), adenylate kinase (adk), methionine aminopeptidase (map), and lactate dehydrogenase (ldh) genes, complete cds A5969var.B ribosomal proteins S10 (rps10), L3 (rpl3), L4 (rpl4), L23 (rpl23), L2 (rpl2), S19 (rps19), L22 (rpl22), S3 (rps3), L16 (rpl16), L29 (rpl29), S17 (rps17), L14 (rpl14), L24 (rpl24), L5 (rpl5), S14 (rps14), S8 (rps8), L6 (rpl6),. ORGANISM Mycoplasma gallisepticum. REFERENCE 1 (bases 1 to 20115) AUTHORS Skamrov,A., Feoktistova,E., Goldman,M. and Beabealashvilli,R. TITLE Cloning and sequencing of Mycoplasma gallisepticum chromosome region containing operons S10 and rrn235 JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 20115) AUTHORS Beabealashvilli,R. TITLE Direct Submission JOURNAL Submitted (03-DEC-1997) Genetic Engeneering, Cardiology Research Center, 3rd. Cherepkovskaya 15A, Moscow 121552, Russia STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: AF036708 BASE COUNT 870 a 526 c 793 g 713 t 1857 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- ---------- --AAGUUAC- --UAAGGGCU UAUGGUGGAU 121 G|CCUUGG|C ACUAGA|AG| GC-GAUGAAG GA|CGUG(CA AA-CC-)U|- GCG-AAAUGC 181 UACGGG|-GA GCU(G-GU-U GGA-)AGCGA UA-AUC-CGU AGAUG|UCCG AAUGGG(GGA 241 A)CCU|GAUU AAUa(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----guga)u AUUAAUU-AU UU-AGAUCU( 481 GA-AUACA-- UA)GGG-UCU -A-A-AA-G- CAAUAC|GU- UGUGAAGU|G A(AACA)UCU 541 CAGUA-GCAA CAGGAAAAGA AAUC(-GAAA --)GAGAU|U CC-GUGUGUA GU(GGCGA)G 601 CGA-AAG-CG GA-ACA-GGC CAAAccaaga ---------- -----(uuua -)-------- 661 ------ucuu gggguuauag gacugcaaug ---------- ---------- ---------- 721 ---------- --uggacuuu gaacugau-a ggaGAAg-ua g-u(u-gaaa a)g-cuacgc 781 |g(aua)aaG GG(UUAUAGC )CCCGU-Auc u-uaaauugg uuuaauaccu ---------- 841 ---------- ----agcagg auccu---GA GUACAUCGAG A(AACGUU-A --)UCUUGAU 901 GGAAGUC-GC C-CA(GACCA U)UG-GGC-A AGCCUAA--- -AUACUAACU AGUGACCGAU 961 AGCG-UA--U AGUACC(GUG A)-GGGA-AA GGUGAAAA-G AACCCA(GG- GA-)UGGGA- 1021 -GUGAAA-UA GAUUCUGAAA CCAU-AUGCC UACAA-C-GU GUCAGAGCAC --A------- 1081 --------(- ---uuaa--) ---------- -----U-GUG UGAUGGCGUG CGU(UUU-GA 1141 AG|U)AUGA| -GCCGGCGAG UUAU-GAUA- GCAAGC--AG GUUAACCuu( ---uag)aaG 1201 G-GAAGCCAA AGC(GAAA-) GCGAGUUU(G AA-UA)GAGC GA-------- ---------- 1261 ---------- -auuaaa-gu G-UUUGUUAU UAUA-GACCC GAAAC-GGG- UUGA-GCUAG 1321 UCAUGGG|CA GGUUGAAGUU AGAG(UAAC) AU-CUAAUGG AGGACCGAAC C-GACUUUC( 1381 -GUUGAAAC) GACAG|CGG- AUGAC-CUGU GACUAGGGGU (-GAAAU)UC CAAUCGAAAU 1441 CCGUGAUAGC UGGUUCUCGU CGAAAUAGUU (-UUAA)GAC UAGC|-GUAA GAuca--ug| 1501 -auc|aaCUG G|AGGUAG|A GCUACUGA-A UGUAUGA-UG |-GCGCC(gc cuu)GGUGUA 1561 CUGAAUACAA -UUAAACUCC GAA-UG-|cc a-a-u-u--- gauu----u| auucuugcAG 1621 UCAGAC--AG U-GGGG(GAU AAG)CUUCAU -UGUC-ACAA GGG(-GAAGA G-)CCCAGAU 1681 CAUUAAAUAA G-GU|CCCU- AAA-A-UAUG -C-UAA-GUG ------GAAA AGGUUGUU-A 1741 AAAUACUUA- AACAGCAAGG AUGUUGGC(U UAGAAGCA)G CCAU-CGU|U (UAA)A|GAG 1801 UGC(GUAACA )GC|UCACUU GU-----CGA GU-GUU-UU- -UGC|GCCGA AGAU-GUAA- 1861 CGGGGCU-AA GUAUA-U|U| ACCGAAUUU| AUGG|auuau cauuc--(gu aa-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---g aaugauagu- GG-UAGACGA G|-----CGU 2221 U-CUA-UA-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-GGGA-U 2341 GAAGUCA-A- A-CC(-GUGA -)GGA--UUG GUGG|ACUGU A-UACAAGUG AGAAUGC-CG 2401 GU|GUA-AGU A--ACGCU-- UGAGAG(UGA GAAU)CUCUC A|AACC-GAU UGACUAAGGU 2461 UUCCUG-GAC GAGG-(GUCG U)CC|U-UCC AGGGUUAGU| CUG|G-ACCU AAGGCGAGGC 2521 A(GAAA)-U- GCGU-AGUCG AUGGAAGAAC AGG-(UU-AA UAUU)C-CUG U|AC|aa-a- 2581 ca--aa-uag ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------cuga u------gga g--uga-cgg agaagguua- augc-au|cc c-cau(uau- 2761 -cggau---- --)uu-gggg -|uuaa---- ---------- ---auaa-ga agucu----- 2821 ---uaag-gg uugg(ca-aa -u-)cc|g-- cccuuuuua- ---------a ggac-aacuu 2881 aug-aaua|c ga-|------ -----gugaa c(-gcuuu-) g-caaguagc ------gaag 2941 -augcau--a cauc-acg-| cuuccaagaa a-agcuuc-u a-ggguua-- -----a-c-u 3001 -auuug--uu u|C|CAGUAC CGAGAACG(A ACACA)CG|U GG-UCAAGG- A-(GAAGA)U 3061 CCUAAGGUUA ||GCGAGUGA ACUAUAGCU- ---------- ----AAGGAA CUCUGCAAAU 3121 UCAUCCCGUA AG(-UUCG)C AAGAAGGGAU |gcucaau-- ---------- ---------- 3181 g(-uaac-)a ---------- ---------- -guugag-C| C(GCA)GUGA AGAACGA-GG 3241 GG|GGACU-- ---GU(UUAA CUAAA)ACAC AGCUCUAUG| CUAAAUC(GC AA------)G 3301 AUGAUGU-AU AUGGGGUGA- CACCUGCCCA GU|GCUG-GA A-GGUUAAAG AAGGGUGUUA 3361 GA-------- (G-CAA)--- --------UC AA-AGCUCCC GACUGAAGCC |CCAGUGAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAAU)UCCGU C|CCGCUUGA AUGGUGUAAC CA-UCUCUUG ACUGUCUCGG CUAUAGACUC 3541 G|GUGAAAUC |CAGGUAC-G GG(UGAAGAC A)CCCGUUAG GCGCAAC-GG GACGGAAAGA 3601 CCCCAUGA|A GCU-UUACUG U|AACUUAAU AUU|GGGCAG AGUUUAGACA UAUAGAGAAU 3661 AGGUGGGAGA CUUUGAAG-- CAACUUC(GC UA)GGGGUUG UGGAGUCACC -A-GUGGAAU 3721 ACCACC|UUU G-UUUAAAUU CUU-CUCUAA -CUAGUU--- -GCUG(--UU -AUC)-CAGC 3781 AAUAG-GACA GUGUUAGGCG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(CAA-AAGG 3841 UAAC)GGAGG C|G|U|GCAA AGGUACCC|U CAGCACGG(U UGGAAA)UCG UGUUAA-GA| 3901 GU(G|UAAUG )GUAUAAGGG UGCUUGACUG UGAGAC(UAA CAG)GUCGAA CAGGUAA(GA 3961 AA)UU-AGGU |CAUAGUGAU CCGGUGGUUC AG(UAUGGA) AUG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CUC|UGGG|G AUAACAG|GC UGA--UACUG CCCAAGA(G- UUC-ACA)UC 4081 GACGGCA-GU GU-UUGGCAC CUCGAUGUC| GACU|C|AUC UC|AUCC|UC GAGCU(GAAG 4141 C---A)-GGU UCGAAGGGU| UCGGC(UGUU C)GC-CGAUU AAAGAGAUAC G-UGAGUUGG 4201 GUUCA-AACC |GUC(GCGA) -GACAGGU-U GGU-CCCUAU -CU|AUUGUG C-C|CG-CAG 4261 GAAGAUU|GA -|AAAGAUU- UAC------- -------UCU (UAGUAC(GA GA)GGACC)G 4321 GAGUGA|AGA CACCUCUUGU GCUCCAGU|U GUAGU(GC-C A-)ACUGCA- CCGCUGGGUA 4381 GCA-ACGUGU CGAACGGAUA AACGCU(GAA AGCAUCUA)A GUGUGAAACC GACUUU|AAG 4441 AAUAAUCUUC C|CU|UCCA- -(-GCGA-)- -UGGA--GU- AAGA|-AU|C GUUG-(UAGA 4501 CU-A)CGACG -UUGAUAG|G CUAA|AGGUG -UAAGUGCC- -(GCGA-)-- GGUAU|UU-A 4561 GCUG|A|UUA GUACUAAUA- AUUCGA-GG| ACUUA----- --------|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS M.floccula 4759 bp RNA RNA 11-JAN-191 DEFINITION Mycoplasma flocculare. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma flocculare. ORGANISM Mycoplasma flocculare. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: L22210 LOCUS MYC16SR 5458 bp ds-DNA Circular BCT 01-SEP-1993 DEFINITION Mycoplasma flocculare 16S ribosomal RNA and 23S ribosomal RNA genes. ACCESSION L22210 KEYWORDS 16S ribosomal RNA; 23S ribosomal RNA. SOURCE Mycoplasma flocculare (strain Ms42) DNA. ORGANISM Mycoplasma flocculare Prokaryotae; Tenericutes; Mollicutes; Mycoplasmas; Mycoplasmatales; Mycoplasmataceae. REFERENCE 1 (bases 1 to 5458) AUTHORS Stemke,G.W., Laigret,F. and Bove,J.M. TITLE The 16S and 23S rRNA operon of Mycoplasma flocculare and comparison with Mycoplasma hyopneumoniae JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers rRNA 354..1894 /product="16S ribosomal RNA" /gene="16S rRNA" rRNA 2290..5187 /product="23S ribosomal RNA" /gene="23S rRNA" source 1..5458 /organism="Mycoplasma flocculare" /strain="Ms42" /sequenced_mol="DNA" BASE COUNT 1760 a 942 c 1271 g 1485 t ORIGIN BASE COUNT 910 a 538 c 741 g 709 t 1861 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------UU UUAAAUAAA- --UAAGAGUA UUUGGUGGAU 121 G|CCUUGG|G UCUGAA|AG| UC-GAUGAAG GA|CGUG(AU UA-CC-)U|- GCG-AUAAGC 181 UUCGUG|-GA GUU(G-GA-A AUA-)AACUA UG-AUA-CGG AGAUU|UCCG AAUGGG(GUA 241 A)CCC|AAUC UAG-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---caaac)- CUAGAUU-GC GC-UUUAAU( 481 GA-AUCCA-- UA)GUU-AAA -G-C-AGCG- AAAUAC|GU- UGCGAAUU|G A(AACA)UCU 541 UAGUA-GCAA CAGGAAAAGA AAAU(-AAAU A-)AUGAU|U CC-CAAAGUA GU(GGCGA)G 601 CGA-AAU--G GA-AAA-GCC CAAAccgu-- ---------- -----(uuuu -)-------- 661 --------ac gguguuguag gacauuuuaa ---------- ---------- ---------- 721 ------cuga guuacaaaau uauauaau-a guaGAAa-aa g-u(u-ggaa a)g-cuuuga 781 |c(aua)gaA GG(UGAUAUC )CCUGU-Aua c-gaaauuau auaaucucau ---------- 841 ---------- ----aaaugu auccu---GA GUAGGGCGGG G(CACGUG-G AA)CCCUGUC 901 UGAAUCU-GC C-AG(GACCA C)CU-GGU-A AGGCUAA--- -AUACUAAUC AGACACCGAU 961 AGUG-AAC-U AGUACC(GUG A)-GG-A-AA GGUGAAAA-G AACCC-(-G- GA-)GGGGA- 1021 -GUGAAA-CA GAUUCUGAAA CCAU-UUACU UACAA-G-UA GUCAAAGCAC --G------- 1081 --------(- ---uuaa--) ---------- -----U-GUG UGAUGGCGUA CAU(CUU-GC 1141 AG|U)AUGG| -UCCGGCGAG UUAU-GUUA- GCAAGC-AAG GUUAAGCA-( -gauua)aaG 1201 C-GGAGCCGU AGG(GAAA-) CCGAGUCU(G AA-UA)GGGC GU-------- ---------- 1261 ---------- ------u-ua G-UUUGUUGA CAUA-GACCC GAAAC-CAG- GUGAcUCUAU 1321 CCAUGAG|CA GAAUGAAACU UUGG(UAAA) AC-AAAGUGG AGGUUCGAAC C-GCAGUAC( 1381 -GCUAAAAA) GUGCC|CGG- AUGGACUUGU -GAUAGCGGU (-GAAAU)-C CAAUCGAACC 1441 UGGAGAUAGC UGGUUCUCUU CGAAAUAGCU (-UUAG)GGC UAGC|-GUGU AGuaa--ua| 1501 uaau|uaguG G|GGGUAG|A GC-ACUGA-A UAUCCAA-UG |-GCGGC(ac cua)GCUGUA 1561 CUGACUAUAu aaCAAACUCC GAA-UA-|cc a-u-u-a--- auuu----u| accuaugcAG 1621 UCGGAA--CG U-GGGU(GAU AAC)GUCCAC -GCUC-GCGA GGG(-AAACA A-)CCCAGAU 1681 CGUCAGCUAA G-GU|CCCA- AAAUU-GUGU -U-AAG-UGA ------GAAA -GGUUGUG-U 1741 AAUUUCUCA- AACAACUAGG AUGUUGGC(U UAGAAGCA)G CCAC-CAU|U (UAA)A|GAG 1801 UGC(GUAAUU )GC|UCACUA GU-----CAA GA-GAU-CA- -UGC|GCCAA UAAU-GUAA- 1861 CGGGACU-AA AACACAA|U| ACCGAAGCU| ACGG|g-aaa uuuu---(uu uau------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- aaaguuugc- gu-UAGGAGA G|-----CGU 2221 U-UGG-AUu- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-CG-C-U 2341 GAAGCUA-G- A-GG(-ggaa c)guac-gua guga|AGAAA U-UAAAAGUG AGAAUGC-CG 2401 GA|AUG-AGU A--ACGAC-- UCGUGG(UGA GAAU)CCACG A|CGCC-UAU UGG-GAAGGU 2461 UUCCUG-GGC AAGG-(GUCG U)CC|A-CCC AGGGUUAGU| CAG|G-GCCU AAGGAGAGGC 2521 U(GAAA)-A- GCGU-AUCCG AUGG-ACAAU CGG-(UU-AA UAUU)C-CGA U|AC|uu-g- 2581 uu--ag-caa a--------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------gcga c------ggg g--uga-cga aaaaagaua- guuu-ua|-c c-acu(uac- 2761 -uggau---- --)ug-uggg -|gcaa---- ---------- ---gcaagca agaaa----- 2821 ---guua-ua uagg(ca-aa -u-)cc|g-- uauaacacua a--------- uuuc-aagcu 2881 gug-augc|a ua-|------ ---gggaaga g(-gaga--) cucaaguacc ------gaau 2941 --uaaau-ga uucu-aug-| uuuccaagaa a-agccuc-u a-guauua-- -----auu-u 3001 uuuuaa--ca a|C|CUGUAC CAAGAACG(- ACACA)CG|U CC-CCAAGA- U-(GAGUA)U 3061 UCUAAGGUGA ||GCGAGAAA ACCAAUGUU- ---------- ----AAGGAA CUCUGCAAAA 3121 UUAUCCCGUA CG(uUUCG)C AAGAAGGGAU |gcccuu--- ---------- ---------- 3181 -(-uuu--)- ---------- ---------- --aaggg-C| C(UCA)GUAA AAUAGGG-GG 3241 GG|CAACU-- ---GU(UUAU CAAAA)ACAC AGCUCUCUG| CGAAGGC(GC AA------)G 3301 CCGAAGU-AU AGAGGGUGA- AGCCUGCCCA GU|GCCC-GA A-GGUUAAGC AAAGUUGUUA 3361 GC-------- (uuuuu)--- --------GC AA-AGCAACC AAGUGAAGCC |CGGGUGAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCAAC(U 3481 AAUU)AUUGA C|CUGCACGA AAGGCGCAAU GA-UCUCCCU ACUGUCUCAA CAUUGGACUC 3541 G|GUGAAAUU |AUGGUAC-C AG(UGAAAAC G)CUGGUUAC CCGCAUC-AA GACGAAAAGA 3601 CCCCGUGG|A CGU-UUACUA U|AACUUCGU AUU|GAGAAU UGGUUUAUUA UGUGUAGGAU 3661 AGGUGGGAGA CAGCGAUC-- CAAGGAC(GC UA)GUUCUUG AGGAGUCAAC -C-UUGAAAU 3721 ACCACC|CUU A-AUAAAUUG AUU-UUCUAA -CCUGCU--- -ucua(--UU -AUC)-uAGA 3781 AGAGA-GACA GUGCGUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|ACCUC C(UAA-AAAG 3841 UAAC)GGAGG U|G|U|UCAA AGCUACAC|U CAAUAUGG(U CAGAAA)CCA UAUGCA-GA| 3901 GC(A|UAAAG )GUAAAAGUG UGGUUGACUG CAAGAC(CUA CAA)GUCGAG CAGGUGC(GA 3961 AA)GC-AGGA |CUUAGUGAU CCGGCGGUUC AU(UGUGGA) AUG|GCCGUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|CGGG|G AUAACAG|GC UAA--UCUUC CCCAAGA(G- AUC-ACA)UC 4081 GACGGGA-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GAGCU(GAAG 4141 U---C)-GGU UCCAAGGGU| UUG-C(UGUU C)GC-CAAUU AAAGCGGUAC G-UGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GAUGUG G-G|CG-UUG 4261 GAAUAUU|GA -|UGAGAGC- UGC------- -------UCU (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG UACCGCUAGU GUUCCAGU|U GUCUU(GC-C A-)AAGGCA- CAGCUGGGUA 4381 GCU-AAGUAC GGAAAAGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAGCU UCCUCA|AAG 4441 AUGAGUAUUC C|UU|----- -(------)- -------AU- GAAA|-UU|C CUUA-(UAGA 4501 CU-A)UGAGG -UUGAUAG|G UUAG|AGGUG -UAAGUGUA- -(GUAA-)-- UACAU|UC-A 4561 GCUG|A|CUA AUACUAAUAA AAUUCA-AA| GUUUAA-AA- --------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS M.hyopneum 4759 bp RNA RNA 11-JAN-191 DEFINITION Mycoplasma hyopneumoniae. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma hyopneumoniae. ORGANISM Mycoplasma hyopneumoniae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X68421 ID MH23SRRN standard; DNA; PRO; 2903 BP. XX AC X68421; XX DT 29-MAR-1993 (Rel. 35, Created) DT 29-MAR-1993 (Rel. 35, Last updated, Version 2) XX DE M.hyopneumoniae gene for 23S rRNA XX KW 23S ribosomal RNA. XX OS Mycoplasma hyopneumoniae OC Prokaryota; Bacteria; Tenericutes; Mollicutes; Mycoplasmas; OC Mycoplasmatales; Mycoplasmataceae. XX RN [1] RP 1-2903 RA Ludwig W.; RT ; RL Submitted (08-SEP-1992) on tape to the EMBL Data Library by: RL W. Ludwig, Lehrst. fuer Mikrobiologie TU Muenchen, Arcisstr. 21, RL 8000 Muenchen 2, FRG XX RN [2] RP 1-2903 RA Ludwig W., Kirchof G., Klugbauer N., Weizenegger M., Betzl D., RA Ehrmann M., Hertel C., Jilg S., Tatzel R., Zitzelsberger H., RA Liebl S., Hochberger M., Shah J., Lane D., Wallnoef P.R.; RT "Complete 23S ribosomal RNA sequences of Gram-positive Bacteria RT with a low DNA G+C content"; RL Syst. Appl. Microbiol. 15:487-501(1992). XX CC *source: strain=ATCC 27719; XX FH Key Location/Qualifiers FH FT rRNA 1..2903 FT /product="23S ribosomal RNA" XX SQ Sequence 2903 BP; 899 A; 529 C; 756 G; 719 T; 0 other; BASE COUNT 899 a 529 c 756 g 719 t 1856 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------UU UUAAAUAAA- --UAAGAGUA UUUGGUGGAU 121 G|CCUUGG|G UCUGAA|AG| UC-GAUGAAG GA|CGUG(AU UA-CC-)U|- GCG-AUAAGC 181 UUCGUG|-GA GUU(G-GA-A AUA-)AACUA UG-AUA-CGG AGAUU|UCCG AAUGGG(GGA 241 A)CCC|AAUC UAG-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---caaac)- CUAGAUU-GC GC-UUUAAU( 481 GA-AUUCA-- UA)AUU-AAA -G-C-AGCG- AGAUAC|GU- UGCGAAUU|G A(AACA)UCU 541 UAGUA-GCAA CAGGAAAAGA AAAU(-AAAU A-)AUGAU|U CC-CAAAGUA GU(GGCGA)G 601 CGA-AAU-GG GA-AGA-GCC CAAAccgu-- ---------- -----(uuuu -)-------- 661 --------ac gggguuauag gacauuuuaa ---------- ---------- ---------- 721 ------uuga guuagaaaau uauguaau-a guaGAAa-aa g-u(u-ggaa a)g-cuuuga 781 |c(aua)gaA GG(UGAUAUC )CCUGU-Aua u-uaaauuau auaaucucau ---------- 841 ---------- ----agaugu auccu---GA GUAGGGCGGG G(CACGUG-G AA)CCCUGUC 901 UGAAUUU-GC C-AG(GACCA C)CU-GGU-A AGGCUAA--- -AUACUAAUC AGACACCGAU 961 AGUG-AAC-U AGUACC(GUG A)-GGGA-AA GGUGAAAA-G AACCCC(GA- GA-)GGGGA- 1021 -GUGAAA-UA GAUUCUGAAA CCAU-UUACU UACAA-G-UA GUCAAAGCAC --G------- 1081 --------(- ---uuaa--) ---------- -----U-GUG UGAUGGCGUA CAU(CUU-GC 1141 AG|U)AUGG| -UCCGGCGAG UUAU-GUUA- ACAAGC-AAG GUUAAGCg-( -gauua)aaG 1201 C-GGAGCCGU AGG(GAAA-) CCGAGUCU(A AA-UA)GGGC GU-------- ---------- 1261 ---------- ------u-aa G-UUUGUUGA CAUA-GACCC GAAAC-CAG- GUGA-UCUAU 1321 CCAUGAG|CA GAAUGAAACU UUGG(UAAC) AC-AAAGUGG AGGUUCGAAC C-GUAGUAC( 1381 -GCUAAAAA) GUGCC|CGG- AUGAC-UUGU GGAUAGCGGU (-GAAAU)UC CAAUCGAACC 1441 UGGAGAUAGC UGGUUCUCUC CGAAAUAGCU (-UUAG)GGC UAGC|-GUAU AGaau--cu| 1501 -aau|uaauG G|GGGUAG|A GC-ACUGA-A UGUGGAA-UG |-GCGGC(ac cua)GCUGUA 1561 CUGACUAUAA -UCAAACUCC GAA-UA-|cc a-u-u-a--- aucu---ua| ucu-augcAG 1621 UCGGAA--CG U-GGGU(GAU AAC)GUCCGC -GCUC-GCGA GGG(-AAACA A-)CCCAGAU 1681 CGUCAGCUAA G-GU|CCCA- AAAUU-AUGU -U-AAG-UGA ------GAAA -GGUUGUG-A 1741 AAUUUCUUA- AACAACUAGG AUGUUGGC(U UAGAAGCA)G CCAC-CAU|U (UAA)A|GAG 1801 UGC(GUAAUU )GC|UCACUA GU-----CAA GA-GAU-CU- -UGC|GCCAA UAAU-GUAA- 1861 CGGGACU-AA AACAUAA|U| ACCGAAGCU| GCGG|guaaa cuu----(uu u--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -aaguuuac- GU-UAGGAGA G|-----CGU 2221 U-UUA-AUu- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-CGGC-U 2341 GAAGCUA-G- A-GG(-GUGA -)CCA--CUA GUGG|AGAAA U-UAAAAGUG AGAAUGC-CG 2401 GA|AUG-AGU A--ACGAU-- UCGAAG(UGA GAAU)CUUCG A|CGCC-UAU UGGGGAAGGU 2461 UUCCUG-GGC AAGG-(GUCG U)CC|A-CCC AGGGUUAGU| CAG|G-GCCU AAGGAGAGGC 2521 U(GAAA)-A- GCGU-AUCCG AUGG-AUAAU CGG-(UU-AA UAUU)C-CGA U|AC|uu-g- 2581 uu--au-ugg a--------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ------guga u------ggg a--uua-cga aaaaagaua- guuu-ua|-c c-acu(uac- 2761 -uggau---- --)ug-uggg -|guaa---- ---------- ---gcaguca agaaa----- 2821 ---guua-ua uagg(ca-aa -u-)cc|g-- uaugacauua a--------- uuuc-aagcu 2881 gug-augc|a ua-|------ ---gggaaga g(-gaga--) cucaaguacc ------gaau 2941 --uaaau-ga cucu-cug-| uuuccaagaa a-agucuc-u a-gcgcua-- -----auu-c 3001 -aauaa--ca a|C|CUGUAC CAAGAACG(G ACACA)CG|U CC-CCAAGA- U-(GAGUA)U 3061 UCUAAGGUGA ||GCGAGAAA ACCAAUGUU- ---------- ----AAGGAA CUCUGCAAAA 3121 UUAUCCCGUA CG(-UUCG)C AAGAAGGGAU |gcccuuu-- ---------- ---------- 3181 -(-uucuu)- ---------- ---------- -aaaggg-C| C(UCA)GUAA AAUAGGG-GG 3241 GG|CAACU-- ---GU(UUAU CAAAA)ACAC AGCUCUCUG| CAAAGGU(GU AA------)A 3301 CCGAAGU-AU AGAGGGUGA- AGCCUGCCCA GU|GCCC-GA A-GGUUAAGC GGAGAUGUUA 3361 GCc------- (U-AUU)--- -------gGC AA-AGCAUUC AAGUGAAGCC |CGGGUGAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCAAC(U 3481 AAUU)AUUGA C|CUGCACGA AAGGCGCAAU GA-UCUCCCU ACUGUCUCAA CAUUGGACUC 3541 G|GUGAAAUU |AUGGUAC-C AG(UGAAAAC G)CUGGUUAC CCGCAUC-AA GACGAAAAGA 3601 CCCCGUGG|A GCU-UUACUA U|AACUUCGU AUU|GAGAAU UGGUUUAUUA UGUGUAGGAU 3661 AGGUGGGAGA UGUCGAUC-- CAAGGGC(GC UA)GUCCUUG UGGAGUCAAC -C-UUGAAAU 3721 ACCACC|CUU A-AUAAAUUG AUU-UUCUAA -CCUGCU--- -UCCC(--UU -AAC)-AGGA 3781 AGAGA-GACA GUGCGUGGUG GG-UAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AGAG 3841 UAAC)GGAGG U|G|U|UCAA AGCUACAC|U CAAUAUGG(U CGGAAA)CCA UAUGCA-GA| 3901 GC(A|UAAAG )GUAAAAGUG UGGUUGACUG CAAGAC(CUA CAA)GUCGAG CAGGUGC(GA 3961 AA)GC-AGGA |CUUAGUGAU CCGGCGGUUC AU(UGUGGA) AUG|GCCGUC GCUCAAC|GG 4021 AUAAAAGCUA CCC|CGGG|G AUAACAG|GC UAA--UCUUC CCCAAGA(G- AUC-ACA)UC 4081 GACGGGA-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|AUC GC|AUCC|UG GAGCU(GAAG 4141 U---C)-GGU UCCAAGGGU| UUGGC(UGUU C)GC-CAAUU AAAGCGGUAC G-UGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CU|GAUGUG G-G|CG-UUG 4261 GAAUAUU|GA -|UGAGAGC- UGC------- -------UCU (UAGUAC(GA GA)GGACC)G 4321 GAGUGG|ACG UACCGCUGGU GUUCCAGU|U GUCUU(GC-C A-)AAGGCA- UAGCUGGGUA 4381 GCU-AAGUAC GGAAAAGAUA ACCGCU(GAA AGCAUCUA)A GCGGGAAGCU UCCUCA|AAG 4441 AUGAGUAUUC C|UU|----- -(------)- -------AU- GAAA|-UU|C CUUA-(UAGA 4501 CU-A)UGAGG -UUGAUAG|G UUAG|AGGUG -UAAGUGUA- -(GCAA-)-- UACAU|UC-A 4561 GCUG|A|CUA AUACUAAUA- AAUUCA-AA| GUUUAA-AAA G-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS GRAM+.CLOS 4759 bp RNA RNA 17-JAN-1993 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 4759 others ORIGIN 1 -x~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~-)~|- ~~~~~~~~~~ 181 ~~~~~~|-~~ ~~~(~-~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~--- ---------- ---------- 301 -----~~~~~ ~~~~~~~~~~ ~~~~~~---- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- -----~-~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~|~ ~~-~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---- 721 ---~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~)~~~~~~~~ 781 |~(~~~)~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~-~ ~~)~~~~~~~ 901 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~-- -~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ -~~~-~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~(~~~-~~ 1141 ~~|~)~~~~| -~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 1321 ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 -~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~|-~~~~ ~~~~~~~~~| 1501 -~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~-~ ~~~~~~~~~~ |-~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~-~~~~| ~~~~~~~~~~ 1621 ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~-~~~~~ ~-~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~-~~~-~~~ ~----~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ (~~~)~|~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~-~- -~~-|~~~~~ ~~~~-~~~~~ 1861 ~~~~~~~~~~ ~~~~~-~|~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~|-----~~~ 2221 ~-~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 2341 ~~~~~~~~~- ~-~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 2401 ~~|~~~~-~~ ~-~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~|~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~-~~ ~~~~~~-~~~ ~~~~|~~~~- 2581 ~~-~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~------~~~ ~~--~~-~~~ ~~~~~~~~~- ~~~~-~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ---------- --~~~~~~~~ ~~~~~~~~-- 2821 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~----~~~ ~~~~~~~~~~ 2881 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 --~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~-~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 3181 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~| ~(~~~)~~~~ ~~~~~~~~~~ 3241 ~~|~~~~~~- ---~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~---~~~~~ 3301 ~~~~~~~~-~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~-~~ ~-~~-~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~( ~~~)~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~|~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ 3721 ~~~~~~|~~~ ~~~-~~~~~~ ~~~~~-~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~-~~-~~~~ 3781 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~|~|~|~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~---~ ~~~~~~-~~~ 3901 ~|~~(~|~~~ ~~)~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~-~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~) ~~~~~|~~~~ ~~~~~~~~~| 4021 ~~~~~~~~~~ ~~~~~|~~~~ |~~~~~~-~| ~~~~~--~~~ ~~~~~~~~~( ~~~~~~~~~) 4081 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~|~~~~|~~~ ~~~~~~~~~| ~~~~~(~~~~ 4141 ~~~~~--)-~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ -~~~~~~|~~ ~~~~~~~|~~ 4261 ~~~~~~~~~~ -|~-|~~~~~ -~~~~~~--- ---------- -~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 4381 ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 |~~~~~~~~~ ~~~~~|~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~|~~~~~-~ 4501 ~~~~~~-~~~ ~~~~~~~~~~ ~~|~~~~~|~ ~~~~~-~~~~ ~~~~~~~~~~ ~--~~~~~~| 4561 ~~~~|~~~-~ |~~~~~~~~~ ~~~~~~~~-- ~~~|~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~||||| // LOCUS C.histol.1 4759 bp RNA RNA 24-APR-1998 DEFINITION Clostridium histolyticum.; rrlC; 23S ribosomal RNA. ACCESSION AB0130 1 KEYWORDS rrlC; 23S ribosomal RNA. SOURCE Clostridium histolyticum. ORGANISM Clostridium histolyticum. REFERENCE 1 (bases 1 to 2669) AUTHORS Matsushita,O. TITLE Clostridium histolyticum 23S rRNA JOURNAL Published Only in DataBase (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2669) AUTHORS Matsushita,O. TITLE Direct Submission JOURNAL Submitted (17-APR-1998) to the DDBJ/EMBL/GenBank databases. Osamu Matsushita, Kagawa Medical University, Department of Microbiology; 1750-1 Ikenobe, Miki-cho, Kagawa 761-0793, Japan (E-mail:osamu@kms. ac.jp, Tel:+81(87) 891-2129, Fax:+81(87)891-2129) STANDARD No information COMMENTS Organism information Culture collection: JCM 1403 Sequence information (bases 1 to 4759) Corresponding GenBank entry: AB013091 BASE COUNT 722 a 532 c 759 g 555 t 2191 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~a a)g-cuucac 781 |c(aua)gaA GG(UAAUAGU )CCUGU-Aa- a-caaaa-c- aag------- ---------- 841 ----aagacu acagaucuga -ucca---GA GUACCACGAG A(CACGUG-A AA)CCUUGUG 901 GGAAGCA-GG G-AG(GACCA C)CU-CCC-A AGGCUAA--- -AUACUACCU GGUGACCGAU 961 AGUG-AAG-A AGUACC(GUG A)-GGGA-AA GGUGAAAA-G AACCCC(GG- GA-)GGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCGU-GUGCC UACAA-U-CG GUCGGAGCAC ---------- 1081 --------(- --uuuauau) ---------- -------GUG UGACGGCGUA CUU(UUU-GU 1141 AG|A)ACGG| -GCCAACGAG UUAC-GAUA- UGUAGC-GAG GUUAAGCAC( -ugaag)GUG 1201 U-GGAGCCGA AGG(GAAA-) CCAAGUCU(G AA-UA)GGGC GA-------- ---------- 1261 ---------- -----au-ua G-UUGCAUGU CGUA-GACCC GAAAC-CGA- GUGA-UCUAU 1321 CCAUGGC|CA GGAUGAAGCG AAAG(UAAA) AU-UUCGUGG AGGUCCGAAC CACGUUGGU( 1381 -GUUGAAAA) ACCAU|GGG- AUGAG-CUGU GGAUAGCGGA (-GAAAU)UC CAAUCGAACU 1441 CGGAGAUAGC UGGUUCUCCU CGAAAUAGCU (-UUAG)GGC UAGC|-GUCA GGuaa--uu| 1501 -aag|uAAUG G|AGGUAG|A GC-ACUGA-A UGAGCUA-GG |-GGGCU(uc ac-)CGCUUA 1561 CCGAACUCUA -UCAAACUCC GAA-UG-|cc g-uau-a--- cuug---ua| ucc-uGGCAG 1621 UCAGAC--UG C-GAAU(GAU AAG)AUCCGU -AGUC-AAAA GGG(-AAAGA G-)CCCAGAC 1681 CAUCAGCUAA G-GU|CCCA- AAGUG-UAAG -U-UAA-GUG ------GUAA AGGAUGUG-G 1741 GAUUUCUAA- GACAACUAGG AUGUUGGC(U UAGAAGCA)G CCAUuCAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUA GU-----CAA GA-GAU-CC- -UGC|GCCGA AAAU-GUCC- 1861 GGGGCUA-AA ACUUA-C|C| ACCGAAGCU| AUGG|augua c------(ua u--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ---guacau- GG-UAGAGGA G|-----CUU 2221 U-CUG-CA-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-UGGU-U 2341 GAAGUUG-U- A-CC(-GAAA -)GGA--GCG GUGG|ACGAU G-CAGAAGUG AGAAUGU-UG 2401 GC|AUG-AGU A--GCGAGA- AAUAGG(UGA GAAU)CCUAU U|GGCC-GAA UAUCUAAGGU 2461 UUCCUG-AGG AAGG-(CUCG U)CC|U-CUC AGGGUUAGU| CGG|G-ACCU AAGCCCAGGC 2521 C(GAAA)-G- GCGU-AGGCG AUGG-ACAAU CGG-(UU-GA UAUU)C-CGA U|AC|CG-c- 2581 ca-a-a-cuu c-guu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---ugacaaa u------ggg g--uga-cgc agaaggaua- ggau-au|gc a-cac(u-gu 2761 uggagu-gu- --)gu-guuc -|aagc---- ---------- ---acuu-ag gcag------ 2821 ---gcua-ag cagg(ca-aa -u-)cc|g-- uuuagucaau ---------- gcug-a-ggu 2881 guu-acga|g ga-|------ -------gcg a(uuuuuu-) ucgc------ ------gaag 2941 --uaucu-ga uucc-acg-| cugccaagaa a-agccuc-u a-ugga---- ------ga-a 3001 -guuug--GC G|C|CCGUAC CGCAAACC(G ACACA)GG|U AG-AUGAGG- A-(GAGAA)U 3061 CCUAAGGCCG ||GCGGAAGA AUUGUUGUU- ---------- ----AAGGAA CUCGGCAAAU 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCCUAGC-- ---------- ---------- 3181 -(-gaaa-)- ---------- ---------- -GCUAGG-C| C(GCA)GUGA AUAGGCC-CA 3241 GG|CAACU-- ---GU(UUAA CAAAA)ACAC AGGUCUCUG| CUAAAGC(GU AA------)G 3301 CUGAUGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGG GGAUCUGUAA 3361 GC-------- (G-UAA)--- --------GC GA-AGCAGUG AACUUAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AUGGCGUAAU GA-UCUGGGC ACUGUCUCAA CAACAAAUCC 3541 G|GUGAAAUU |GUAGUGC-A AG(UGAAGAU G)CUUGCUAC CCGCAGU-UG GACGGAAAGA 3601 CCCCGUAG|A GCU-UUACUG U|AGCUUAGC AUU|GAAUUU CGGUAUUGUC UGUACAGGAU 3661 AGGUGGGAGA CUUGGAAA-- UACCUUC(GU CA)GGGGGUA UGGAGUCAUC -C-UUGGGAU 3721 ACCACC|CUG A-CAGUACUG GAA-UUCUAA -CGAAAG--- -GCCA(-uga -auc)-UGGU 3781 CgUCG-GACA UUGUUAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(GAA-AGUG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGCGCGG(U CGGAAA)UCG CGCGUA-GA| 3901 GU(G|CAAAG )GCAGAAGGG AGCCUGACUG CGACAC(AUA CAA)GUGGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUAC CU(CGUGGG) AGG|GCCAUC GCUUAAC|GG 4021 AUAAAAGCUA CCU|CGGG|G AUAACAG|GC UGA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GAGCU(GAAG 4141 U---C)-GGU UCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGCAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GCUGCG G-G|CG-CAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACU GACCUCUGGU GCACCAGU|U GUCAC(GC-C A-)GUGGCA- CAGCUGGGUA 4381 GCU-AUGUCG GGAAGGGAUA AACACU(GAA AGCAUCUA)A GUGUGAAGCC CACCUC|AAG 4441 AUUAGAUUUC C|CA|UGAC- -(-GAAA-)- -GUCA--GU- AAGA|-CU|C CUUG-(AAGA 4501 AC-A)CAAGG -UUGAUAG|G UGAG|AGGUG -UAAGCAUG- -(GUAA-)-- CAUGU|GU-A 4561 GCUG|A|UUC AUACUAAUA- AGUC-GAGG| ACUUGA-CCA A--uau--|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS C.histol.2 4759 bp RNA RNA 24-APR-1998 DEFINITION Clostridium histolyticum.; rrlB; 23S ribosomal RNA. ACCESSION AB0130 0 KEYWORDS rrlB; 23S ribosomal RNA. SOURCE Clostridium histolyticum. ORGANISM Clostridium histolyticum. REFERENCE 1 (bases 1 to 2669) AUTHORS Matsushita,O. TITLE Clostridium histolyticum 23S rRNA JOURNAL Published Only in DataBase (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2669) AUTHORS Matsushita,O. TITLE Direct Submission JOURNAL Submitted (17-APR-1998) to the DDBJ/EMBL/GenBank databases. Osamu Matsushita, Kagawa Medical University, Department of Microbiology; 1750-1 Ikenobe, Miki-cho, Kagawa 761-0793, Japan (E-mail:osamu@kms. ac.jp, Tel:+81(87) 891-2129, Fax:+81(87)891-2129) STANDARD No information COMMENTS Organism information Culture collection: JCM 1403 Sequence information (bases 1 to 4759) Corresponding GenBank entry: AB013090 BASE COUNT 722 a 533 c 759 g 554 t 2191 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~a a)g-cuucac 781 |c(aua)gaA GG(UAAUAGU )CCUGU-Aa- a-caaaa-c- aag------- ---------- 841 ----aagacu acagaucuga -ucca---GA GUACCACGAG A(CACGUG-A AA)CCUUGUG 901 GGAAGCA-GG G-AG(GACCA C)CU-CCC-A AGGCUAA--- -AUACUACCU GGUGACCGAU 961 AGUG-AAG-A AGUACC(GUG A)-GGGA-AA GGUGAAAA-G AACCCC(GG- GA-)GGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCGU-GUGCC UACAA-U-CG GUCGGAGCAC ---------- 1081 --------(- --uuuauau) ---------- -------GUG UGACGGCGUA CUU(UUU-GU 1141 AG|A)ACGG| -GCCAACGAG UUAC-GAUA- UGUAGC-GAG GUUAAGCAC( -ugaag)GUG 1201 U-GGAGCCGA AGG(GAAA-) CCAAGUCU(G AA-UA)GGGC GA-------- ---------- 1261 ---------- -----au-ua G-UUGCAUGU CGUA-GACCC GAAAC-CGA- GUGA-UCUAU 1321 CCAUGGC|CA GGAUGAAGCG AAAG(UAAA) AU-UUCGUGG AGGUCCGAAC CACGUUGGU( 1381 -GUUGAAAA) ACCAU|GGG- AUGAG-CUGU GGAUAGCGGA (-GAAAU)UC CAAUCGAACU 1441 CGGAGAUAGC UGGUUCUCCU CGAAAUAGCU (-UUAG)GGC UAGC|-GUCA GGuaa--uu| 1501 -aag|uAAUG G|AGGUAG|A GC-ACUGA-A UGAGCUA-GG |-GGGCU(uc ac-)CGCUUA 1561 CCGAACUCUA -UCAAACUCC GAA-UG-|cc g-uau-a--- cuug---ua| ucc-uGGCAG 1621 UCAGAC--UG C-GAAU(GAU AAG)AUCCGU -AGUC-AAAA GGG(-AAAGA G-)CCCAGAC 1681 CAUCAGCUAA G-GU|CCCA- AAGUG-UAAG -U-UAA-GUG ------GUAA AGGAUGUG-G 1741 GAUUUCUAA- GACAACUAGG AUGUUGGC(U UAGAAGCA)G CCAUuCAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUA GU-----CAA GA-GAU-CC- -UGC|GCCGA AAAU-GUCC- 1861 GGGGCUA-AA ACUUA-C|C| ACCGAAGCU| AUGG|augua c------(ua u--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ---guacau- GG-UAGAGGA G|-----CUU 2221 U-CUG-CA-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-UGGU-U 2341 GAAGUCG-U- A-CC(-GAAA -)GGA--GCG GUGG|ACGAU G-CAGAAGUG AGAAUGU-UG 2401 GC|AUG-AGU A--GCGAGA- AAUAGG(UGA GAAU)CCUAU U|GGCC-GAA UAUCUAAGGU 2461 UUCCUG-AGG AAGG-(CUCG U)CC|U-CUC AGGGUUAGU| CGG|G-ACCU AAGCCCAGGC 2521 C(GAAA)-G- GCGU-AGGCG AUGG-ACAAU CGG-(UU-GA UAUU)C-CGA U|AC|CG-c- 2581 ca-a-a-cuu c-guu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---ugacaaa u------ggg g--uga-cgc agaaggaua- ggau-au|gc a-cac(u-gu 2761 uggagu-gu- --)gu-guuc -|aagc---- ---------- ---acuu-ag gcag------ 2821 ---gcua-ag cagg(ca-aa -u-)cc|g-- uuuagucaau ---------- gcug-a-ggu 2881 guu-acga|g ga-|------ -------gcg a(uuuuuu-) ucgc------ ------gaag 2941 --uaucu-ga uucc-acg-| cugccaagaa a-agccuc-u a-ugga---- ------ga-a 3001 -guuug--GU G|C|CCGUAC CGCAAACC(G ACACA)GG|U AG-AUGAGG- A-(GAGAA)U 3061 CCUAAGGCCG ||GCGGAAGA AUUGUUGUU- ---------- ----AAGGAA CUCGGCAAAU 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCCUAGC-- ---------- ---------- 3181 -(-gaaa-)- ---------- ---------- -GCUAGG-C| C(GCA)GUGA AUAGGCC-CA 3241 GG|CAACU-- ---GU(UUAA CAAAA)ACAC AGGUCUCUG| CUAAAGC(GU AA------)G 3301 CUGAUGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGG GGAUCUGUAA 3361 GC-------- (G-UAA)--- --------GC GA-AGCAGUG AACUUAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AUGGCGUAAU GA-UCUGGGC ACUGUCUCAA CAACAAAUCC 3541 G|GUGAAAUU |GUAGUGC-A AG(UGAAGAU G)CUUGCUAC CCGCAGU-UG GACGGAAAGA 3601 CCCCGUAG|A GCU-UUACUG U|AGCUUAGC AUU|GAAUUU CGGUAUUGUC UGUACAGGAU 3661 AGGUGGGAGA CUUGGAAA-- UACCUUC(GU CA)GGGGGUA UGGAGUCAUC -C-UUGGGAU 3721 ACCACC|CUG A-CAGUACUG GAA-UUCUAA -CGAAAG--- -GCCA(-uga -auc)-UGGU 3781 CgUCG-GACA UUGUUAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(GAA-AGUG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGCGCGG(U CGGAAA)UCG CGCGUA-GA| 3901 GU(G|CAAAG )GCAGAAGGG AGCCUGACUG CGACAC(AUA CAA)GUGGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUAC CU(CGUGGG) AGG|GCCAUC GCUUAAC|GG 4021 AUAAAAGCUA CCU|CGGG|G AUAACAG|GC UGA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GAGCU(GAAG 4141 U---C)-GGU UCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGCAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GCUGCG G-G|CG-CAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACU GACCUCUGGU GCACCAGU|U GUCAC(GC-C A-)GUGGCA- CAGCUGGGUA 4381 GCU-AUGUCG GGAAGGGAUA AACACU(GAA AGCAUCUA)A GUGUGAAGCC CACCUC|AAG 4441 AUUAGAUUUC C|CA|UGAC- -(-GAAA-)- -GUCA--GU- AAGA|-CU|C CUUG-(AAGA 4501 AC-A)CAAGG -UUGAUAG|G UGAG|AGGUG -UAAGCAUG- -(GUAA-)-- CAUGU|GU-A 4561 GCUG|A|CUC AUACUAAUA- AGUC-GAGG| ACUUGA-CCA A--uau--|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS C.histol.3 4759 bp RNA RNA 24-APR-1998 DEFINITION Clostridium histolyticum.; rrlA; 23S ribosomal RNA. ACCESSION AB0130 9 KEYWORDS rrlA; 23S ribosomal RNA. SOURCE Clostridium histolyticum. ORGANISM Clostridium histolyticum. REFERENCE 1 (bases 1 to 2751) AUTHORS Matsushita,O. TITLE Clostridium histolyticum 23S rRNA JOURNAL Published Only in DataBase (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 2751) AUTHORS Matsushita,O. TITLE Direct Submission JOURNAL Submitted (17-APR-1998) to the DDBJ/EMBL/GenBank databases. Osamu Matsushita, Kagawa Medical University, Department of Microbiology; 1750-1 Ikenobe, Miki-cho, Kagawa 761-0793, Japan (E-mail:osamu@kms. ac.jp, Tel:+81(87) 891-2129, Fax:+81(87)891-2129) STANDARD No information COMMENTS Organism information Culture collection: JCM 1403 Sequence information (bases 1 to 4759) Corresponding GenBank entry: AB013089 BASE COUNT 722 a 533 c 759 g 554 t 2191 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~|~~~~~~|~ ~~~~~~|~~| ~~~~~~~~~~ ~~|~~~~(~~ ~~~~~~)~|~ ~~~~~~~~~~ 181 ~~~~~~|~~~ ~~~(~~~~~~ ~~~~)~~~~~ ~~~~~~-~~~ ~~~~~|~~~~ ~~~~~~(~~~ 241 ~)~~~|~~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~( 481 ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~- ~~~~~~|~~~ ~~~~~~~~|~ ~(~~~~)~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~|~ ~~~~~~~~~~ ~~(~~~~~)~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~a a)g-cuucac 781 |c(aua)gaA GG(UAAUAGU )CCUGU-Aa- a-caaaa-c- aag------- ---------- 841 ----aagacu acagaucuga -ucca---GA GUACCACGAG A(CACGUG-A AA)CCUUGUG 901 GGAAGCA-GG G-AG(GACCA C)CU-CCC-A AGGCUAA--- -AUACUACCU GGUGACCGAU 961 AGUG-AAG-A AGUACC(GUG A)-GGGA-AA GGUGAAAA-G AACCCC(GG- GA-)GGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCGU-GUGCC UACAA-U-CG GUCGGAGCAC ---------- 1081 --------(- --uuuauau) ---------- -------GUG UGACGGCGUA CUU(UUU-GU 1141 AG|A)ACGG| -GCCAACGAG UUAC-GAUA- UGUAGC-GAG GUUAAGCAC( -ugaag)GUG 1201 U-GGAGCCGA AGG(GAAA-) CCAAGUCU(G AA-UA)GGGC GA-------- ---------- 1261 ---------- -----au-ua G-UUGCAUGU CGUA-GACCC GAAAC-CGA- GUGA-UCUAU 1321 CCAUGGC|CA GGAUGAAGCG AAAG(UAAA) AU-UUCGUGG AGGUCCGAAC CACGUUGGU( 1381 -GUUGAAAA) ACCAU|GGG- AUGAG-CUGU GGAUAGCGGA (-GAAAU)UC CAAUCGAACU 1441 CGGAGAUAGC UGGUUCUCCU CGAAAUAGCU (-UUAG)GGC UAGC|-GUCA GGuaa--uu| 1501 -aag|uAAUG G|AGGUAG|A GC-ACUGA-A UGAGCUA-GG |-GGGCU(uc ac-)CGCUUA 1561 CCGAACUCUA -UCAAACUCC GAA-UG-|cc g-uau-a--- cuug---ua| ucc-uGGCAG 1621 UCAGAC--UG C-GAAU(GAU AAG)AUCCGU -AGUC-AAAA GGG(-AAAGA G-)CCCAGAC 1681 CAUCAGCUAA G-GU|CCCA- AAGUG-UAAG -U-UAA-GUG ------GUAA AGGAUGUG-G 1741 GAUUUCUAA- GACAACUAGG AUGUUGGC(U UAGAAGCA)G CCAUuCAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUA GU-----CAA GA-GAU-CC- -UGC|GCCGA AAAU-GUCC- 1861 GGGGCUA-AA ACUUA-C|C| ACCGAAGCU| AUGG|augua c------(ua u--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- ---guacau- GG-UAGAGGA G|-----CUU 2221 U-CUG-CA-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-UGGU-U 2341 GAAGUCG-U- A-CC(-GAAA -)GGA--GCG GUGG|ACGAU G-CAGAAGUG AGAAUGU-UG 2401 GC|AUG-AGU A--GCGAGA- AAUAGG(UGA GAAU)CCUAU U|GGCC-GAA UAUCUAAGGU 2461 UUCCUG-AGG AAGG-(CUCG U)CC|U-CUC AGGGUUAGU| CGG|G-ACCU AAGCCCAGGC 2521 C(GAAA)-G- GCGU-AGGCG AUGG-ACAAU CGG-(UU-GA UAUU)C-CGA U|AC|CG-c- 2581 ca-a-a-cuu c-guu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---ugacaaa u------ggg g--uga-cgc agaaggaua- ggau-au|gc a-cac(u-gu 2761 uggagu-gu- --)gu-guuc -|aagc---- ---------- ---acuu-ag gcag------ 2821 ---gcua-ag cagg(ca-aa -u-)cc|g-- uuuagucaau ---------- gcug-a-ggu 2881 guu-acga|g ga-|------ -------gcg a(uuuuuu-) ucgc------ ------gaag 2941 --uaucu-ga uucc-acg-| cugccaagaa a-agccuc-u a-ugga---- ------ga-a 3001 -guuug--GU G|C|CCGUAC CGCAAACC(G ACACA)GG|U AG-AUGAGG- A-(GAGAA)U 3061 CCUAAGGCCG ||GCGGAAGA AUUGUUGUU- ---------- ----AAGGAA CUCGGCAAAU 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCCUAGC-- ---------- ---------- 3181 -(-gaaa-)- ---------- ---------- -GCUAGG-C| C(GCA)GUGA AUAGGCC-CA 3241 GG|CAACU-- ---GU(UUAA CAAAA)ACAC AGGUCUCUG| CUAAAGC(GU AA------)G 3301 CUGAUGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGG GGAUCUGUAA 3361 GC-------- (G-UAA)--- --------GC GA-AGCAGUG AACUUAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AUGGCGUAAU GA-UCUGGGC ACUGUCUCAA CAACAAAUCC 3541 G|GUGAAAUU |GUAGUGC-A AG(UGAAGAU G)CUUGCUAC CCGCAGU-UG GACGGAAAGA 3601 CCCCGUAG|A GCU-UUACUG U|AGCUUAGC AUU|GAAUUU CGGUAUUGUC UGUACAGGAU 3661 AGGUGGGAGA CUUGGAAA-- UACCUUC(GU CA)GGGGGUA UGGAGUCAUC -C-UUGGGAU 3721 ACCACC|CUG A-CAGUACUG GAA-UUCUAA -CGAAAG--- -GCCA(-uga -auc)-UGGU 3781 CgUCG-GACA UUGUUAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(GAA-AGUG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGCGCGG(U CGGAAA)UCG CGCGUA-GA| 3901 GU(G|CAAAG )GCAGAAGGG AGCCUGACUG CGACAC(AUA CAA)GUGGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUAC CU(CGUGGG) AGG|GCCAUC GCUUAAC|GG 4021 AUAAAAGCUA CCU|CGGG|G AUAACAG|GC UGA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GAGCU(GAAG 4141 U---C)-GGU UCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGCAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GCUGCG G-G|CG-CAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACU GACCUCUGGU GCACCAGU|U GUCAC(GC-C A-)GUGGCA- CAGCUGGGUA 4381 GCU-AUGUCG GGAAGGGAUA AACACU(GAA AGCAUCUA)A GUGUGAAGCC CACCUC|AAG 4441 AUUAGAUUUC C|CA|UGAC- -(-GAAA-)- -GUCA--GU- AAGA|-CU|C CUUG-(AAGA 4501 AC-A)CAAGG -UUGAUAG|G UGAG|AGGUG -UAAGCAUG- -(GUAA-)-- CAUGU|GU-A 4561 GCUG|A|CUC AUACUAAUA- AGUC-GAGG| ACUUGA-CCA A--uau--|- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---|||||| // LOCUS C.botuli.a 4759 bp RNA RNA 11-JAN-191 DEFINITION Clostridium botulinum. ACCESSION No information KEYWORDS No information. SOURCE Clostridium botulinum. ORGANISM Clostridium botulinum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: X65602 ID S51077 backbone; DNA; PRO; 3206 BP. XX AC S51077; X65602; XX DT 16-FEB-1993 (Rel. 34, Created) DT 16-FEB-1993 (Rel. 34, Last updated, Version 1) XX DE 23S rRNA, 5S rRNA {clone pCBA4} [Clostridium botulinum, type A, DE NCTC 7272, Genomic, 3206 nt] XX KW . XX OS Clostridium botulinum OC Prokaryota; Bacteria; Firmicutes; Endospore-forming rods and cocci; OC Bacillaceae; Clostridium. XX RN [1] RP 1-3206 RA East A.K., Thompson D.E., Collins M.D.; RT "Analysis of operons encoding 23S rRNA of Clostridium botulinum RT type A."; RL J. Bacteriol. 174:8158-8162(1992). XX CC This entry [NCBI gibbsq 120103] was created by the journal scanning CC component of NCBI/GenBank at the National Library of Medicine. This CC sequence comes from Fig. 2, 3 and 4. XX FH Key Location/Qualifiers FH FT rRNA 189..3084 FT /note="Description: 23S rRNA" FT rRNA 3176..3206 FT /partial FT /note="Description: 5S rRNA" XX SQ Sequence 3206 BP; 953 A; 640 C; 913 G; 700 T; 0 other; BASE COUNT 832 a 602 c 865 g 597 t 1863 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UCAAGCUAC- --AAAGGGCG CAUGGUGAAU 121 G|CCUUGG|C ACUAGG|AG| CC-GAAGAAG GA|CGCG(AU AA-GC-)U|- GCG-AUAAGC 181 CUUGGG|-UA GCC(G-CA-A AUA-)GGCUG AG-AUC-CAG GGAUU|UCCG AAUGAG(GAA 241 A)CUC|ACAU GG--(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- --guaacc)- -CCAUGU-AU CA-UGCACU( 481 GA-AUACA-- UA)GGU-GUA -U-G--AGG- GUAAAC|CC- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCG GAGGAAGAGA AAGA(-AAAA --)UCGAU|U UC-CUAAGUA GC(GGCGA)G 601 CGA-ACG-GG AA-AGA-GCC CAAAccagaa -a-------- -----(cuug -)-------- 661 -----uuucu gggguugcgg au--agauca uaaa------ ---------- ---------- 721 ---------- ----agaaga gguaucuu-a aucGAAgagg g-c(u-ggaa c)g-cccuac 781 |c(aua)gaA GG(UAAUAGU )CCUGU-Agg u-aaaaagag aaaacuuc-- ---------- 841 ---------- --gagaucua aucca---GA GUACCACGAG A(CACGUG-A AA)CCUUGUG 901 GGAAGCA-GG G-AG(GACCA C)CU-CCC-A AGGCUAA--- -AUACUACCU AGUGACCGAU 961 AGUG-AAG-C AGUACC(GUG A)-GGGA-AA GGAAGAAA-A GUCCC-(GG- AA-)--GGA- 1021 -GUGAAA-UA GAACCUGAAA CCGU-GUGCC UACAA-C-CG AUCGGAGCAC ---------- 1081 --------(- --guuaaa-) ---------- -------GUG UGACGAUGUG CUU(UUU-GU 1141 AG|A)ACGA| -GCCAGCGAG UUAC-GCUA- UGUAGC-AAG GUUAAGUAC( -uuaag)GUA 1201 U-GGAGCCGA AGG(GAAA-) CCGAGUCU(G AA-AA)GGGC GA-------- ---------- 1261 ---------- ------a-aa G-UUGCAUGG UGUA-GACCC GAAAC-CGG- GUGA-CCUAU 1321 CCAUGGC|CA GGUUGAAGCG AGAG(UAAA) AU-CUCGUGG AGGACCGAAC CACGUUGGU( 1381 -GUUGAAAA) ACCAU|GGG- AUGAG-CUGU GGAUAGCGGA (-GAAAU)UC CAAUCGAACU 1441 CGGAGAUAGC UGGUUCUCCU CGAAAUAGCU (-UUAG)GGC UAGC|-GUCG UGuaa--uu| 1501 -gag|UAAUG G|AGGUAG|A GC-ACUGA-A UGGGCUA-GG |-GGCUA(ua g--)UAGUUA 1561 CCGAACCCUA -UCAAACUCC GAA-UG-|cc a-uau-a--- cuug---ua| uCA-CGGCAG 1621 UCAGAC--UG C-GAAU(GAU AAG)AUCCGU -AGUC-AAAA GGG(-AAACA G-)CCCAGAC 1681 CAUCAGCUAA G-GU|CCCA- AAGUG-UAAG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 GAUUUCUAA- GACAACUAGG AUGUUGGC(U UAGAAGCA)G CCACUCAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUA GU-----CAA GA-GAU-CC- -UGC|GCCGA AGAU-GUCC- 1861 GGGGCUC-AA ACUUA-C|C| ACCGAAGCU| AUGG|gugua cac----(ua u--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -guguacgc- GG-UAGAGGA G|-----CUU 2221 U-CUG-UA-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-GGGU-U 2341 GAAGUCG-U- A-CC(-GUAA -)GGA--GCG GUGG|ACUGU A-CAGAAGUG AGAAUGC-UG 2401 GC|AUA-AGU A--GCGAGA- AAUAAG(UGA GAAU)CUUAU U|GGCC-GAA AACCUAAGGU 2461 UUCCUG-AGG AAGG-(UUCG U)CC|G-CUC AGGGUUAGU| CGG|G-ACCU AAGCCGAGGC 2521 C(GAAA)-G- G--U-AGGUG AUGG-ACAAU CGG-(UU-GA UAUU)C-CGA U|AC|CG-c- 2581 cu-a-u-uua c-guu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---ugagaaa u------ggg g--uga-cgc aguaggaua- agau-gu|gc g-cac(uau- 2761 -uggau-gu- --)gc-gucu -|aagc---- ---------- ---acuu-ag gcau------ 2821 ---gcuu-ga uagg(ca-aa -u-)cc|g-- ucgagcuaa- ---------- gcug-a-ggu 2881 gug-augg|g ga-|------ -------gcc a(-uuua--) uggc------ ------gagg 2941 --uaucu-ga uucc-aca-| cugccaagaa a-agccuc-u c-ucga---- ------gu-g 3001 -aauag--gu g|C|CCGUAC CGCAAACC(G ACACA)GG|U AG-GUGAGG- A-(GAGAA)U 3061 CCUAAGGCCA ||UCGGAAGA AUUGCUGUU- ---------- ----AAGGAA CUCGGCAAAU 3121 UAACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCCUAC--- ---------- ---------- 3181 -(-gaaa-)- ---------- ---------- --GUAGG-C| C(GCA)GAGA AUAGGCC-CA 3241 AG|CAACU-- ---GU(UUAG CAAAA)ACAC AGGUCUCUG| CUAAAGC(GA AA------)G 3301 CUGAUGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGG GGAACACUUA 3361 GC-------- (G-UAA)--- --------GC GA-AGGUGUG AACUUAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AUGGCGUAAU GA-UUUGGGC ACUGUCUCAA CAGCAAAUCC 3541 G|GCGAAAUU |GUAGUGC-A AG(UGAAGAU G)CUUGCUAC CCGCGAU-UG GACGGAAAGA 3601 CCCCGUAG|A GCU-UUACUG U|AGCUUAGC ACU|GAAUCU CGGUAUUGUC UGUACAGGAU 3661 AGGUGGGAGA CUUGGAAA-- CUUGGGC(GU CA)-CGUGAG UGGAGUCAUC -C-UUGGGAU 3721 ACCACC|CUG A-CAGCACUG GGG-UUCUAA -CCGGCG--- -GCCA(-uga -auc)-UGGU 3781 CACGG-GACA UUGUUAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAAG 3841 UAAC)GGAGG C|G|C|CCAA AAGUUCCC|U CAGCGCGG(U CGGAAA)UCG CGCGAA-GA| 3901 GU(G|CAAAG )GCAGAAGGG AGCUUGACUG CGACAC(AUA CAG)GUGGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUAC CU(CGUGGG) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCU|CGGG|G AUAACAG|GC UGA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GAAG 4141 U---A)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGCAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-UAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACC AACCUCUGGU GCACCAGU|U GUCAC(GC-C A-)GUGGCA- CAGCUGGGUA 4381 GCU-AUGUUG GGACUGGAUA AACGCU(GAA AGCAUCUA)A GCGUGAAGCC AACCUC|AAG 4441 AUGAGAUUUC C|CA|UAGC- -(-GUAA-)- -GCUA--GU- AAGA|-CU|C CUGG-(AAGA 4501 AC-A)CCAGG -UUGAUAG|G UCAG|AGAUG -UAAGCAUG- -(GCAA-)-- CAUGU|UA-A 4561 GUUG|A|CUG AUACUAAUA- AGUC-GAGG| GCUUGA-CCA A-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.botuli.b 4759 bp RNA RNA 11-JAN-191 DEFINITION Clostridium botulinum. ACCESSION No information KEYWORDS No information. SOURCE Clostridium botulinum. ORGANISM Clostridium botulinum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: M94259 LOCUS CLORDGB 2910 bp ds-DNA BCT 07-JUN-1993 DEFINITION Clostridium botulinum type b 23S ribosomal RNA. ACCESSION M94259 KEYWORDS 23S ribosomal RNA. SOURCE Clostridium botulinum (strain serotype b) (library: ATCC 25765) DNA. ORGANISM Clostridium botulinum Prokaryotae; Firmicutes; Endospore-forming rods and cocci; Bacillaceae. REFERENCE 1 (bases 1 to 2910) AUTHORS Campbell,K.D., East,A.K., Thompson,D.E. and Collins,M.D. TITLE Studies on the large subunit ribosomal RNA genes and intergenic spacer regions of non-proteolytic Clostriduim botulinum types B, E, and F JOURNAL Res. Microbiol. (1993) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA <1..>2910 /product="23S ribosomal RNA" source 1..2910 /organism="Clostridium botulinum" /strain="serotype b" /sequenced_mol="DNA" /tissue_lib="ATCC 25765" BASE COUNT 843 a 588 c 856 g 620 t 3 others ORIGIN BASE COUNT 843 a 588 c 856 g 620 t 1852 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UCAAGCUAC- --AAAGGGCG CAUGGUGAAU 121 G|CCUUGG|C AUCAGG|AG| CC-GAUGAAG GA|CGCG(AU AA-GC-)U|- GCG-AUAAGC 181 UUCGAG|-UA GAC(G-CA-C AUA-)GUCAG AG-AUC-CGA AGAUU|UCCG AAUGAG(GAA 241 A)CUC|ACAU GGG-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---aaac-)- CCCAUGU-AU CG-UAAAGU( 481 GA-AUACA-- UA)GCU-UUA -U-G--AAG- GUAAAC|CC- AGGGAACU|G A(AACA)UCU 541 AAGUA-CCUG GAGGAAGAGU AAGA(-AAAA --)UCGAU|U UU-CUUAGUA GC(GGCGA)G 601 CNA-AAG-GG AA-AGA-GCC CAAAccaaag -a-------- -----(uuua -)-------- 661 -----ucucu gggguugcgg ac--aggaca uuaa------ ---------- ---------- 721 ---------- ---cgagaaa uuaugguu-a accGAAcaca a-c(u-ggaa a)g-uuggac 781 |c(gua)ggG GG(UAAUAGU )CCUGU-Agg u-gaaaauua uaauuauca- ---------- 841 ---------- --aguucuga -ucca---GA GUACCACGAG A(CACGUG-A AA)CCUUGUG 901 GGAAGCA-GG G-AG(GACCA C)CU-CCC-A AGGCUAA--- -AUACUACCU GAUGACCGAU 961 AGUG-AAG-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G AACCCC(GG- GA-)GGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAU-GUGCC UACAA-C-CG AUCAAAGCAC --c------- 1081 --------(- ---uuaug-) ---------- -----u-GUG UGAUGAUGUG CUU(UUU-GU 1141 AG|A)ACGA| -GCCAACGAG UUAC-GGUA- UGUAGC-AAG GUUAAGUAC( -uuaag)GUA 1201 C-GGAGCCGA AGG(GAAA-) CCGAGUCU(U AA-UA)GGGC GA-------- ---------- 1261 ---------- ------c-ua G-UUGCAUGC UGUA-GACCC GAAAC-CGG- GUGA-CCUAU 1321 CCAUGGC|CA GGUUGAAGCG AGGG(UAAA) AC-CUCGUGG AGGACCGAAC CACGUUGCU( 1381 -GUUGAAAA) AGCAU|GGG- AUGAG-CUGU GGAUAGCGGA (-GAAAU)UC CAAUCGAACU 1441 CGGAUAUAGC UGGUUCUCCU CGAAAUAGCU (-UUAG)GGC UAGC|-GUCG GAAaa-ugu| 1501 -gag|UACUG G|GGGUAG|A GC-ACUGA-A UGGGCUA-GG |-GGGCA(ua g--)CGCUUA 1561 CCGAACCUUA -UCAAACUCC GAA-UA-|cc a-gau-a--- cuau---ca| gUC-CGGCAG 1621 UCAGAC--UG C-GAAA(GAU AAG)UUCCGU -AGUC-AAAA GGG(-AAACA G-)CCCAGAU 1681 CGUCAGCUAA G-GU|CCCA- AAGUG-UAAG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 GAUUUCUAA- GACAACUAGG AUGUUGGC(U UAGAAGCA)G CCACUCAU|U (AAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUA GU-----CAA GA-GAU-CC- -UGC|GCCGA AAAU-GUCC- 1861 GGGGCUC-AA ACUUA-C|C| ACCGAAGCU| ACGG|guuua cac----(au ua-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -gugugagc- GG-UAGAGGA G|-----CGU 2221 C-GUA-AU-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --C-GGGC-U 2341 GAAGUCG-U- A-CC(-GUAA -)GGA--GCG GUGG|ACUGA U-UACGAGUG AGAAUGU-UG 2401 GC|AUU-AGU A--GCGAGA- UGUGGG(UGA GAAU)CCCAC A|GGCC-GAA UACCUAAGGU 2461 UUCCUC-AGG AAGG-(UUCG U)CC|G-CUG AGGGUUAGU| CGG|G-ACCU AAGCUGAGGC 2521 C(GAAA)-G- GCGU-AAGCG AUGG-ACAAU CGG-(UU-GA UAUU)C-CGA U|AC|CA-c- 2581 ua-u-u--au c-guua---- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---uuaucga u------ggu g--uga-cgg agaaggaua- ggau-gu|gc u-agc(uau- 2761 -uggau---- --)gc-uagu -|cuaa---- ---------- ---gcgu-uu aggga----- 2821 --guuag-aa uagg(ca-aa -u-)cc|g-- uucuaacaa- ---------- uucu-gaggc 2881 gug-augg|g ga-|------ -----agguu c(-uaag--) gaacc----- ------gaag 2941 --uaucu-ga uucc-aug-| cuuccaagaa a-agcauc-u a-gaaa---- ------ga-g 3001 -aaaua--gu g|C|CCGUAC CGCAAACC(G ACACA)GG|U AG-GUGAGG- A-(GAGAA)U 3061 CCUAAGGCCG ||GCGGAAGA AUUGCAGUU- ---------- ----AAGGAA CUAGGCAAAU 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCCUGC--- ---------- ---------- 3181 -(-gaga-)- ---------- ---------- --GCAGG-C| C(GCA)GAGA AUAGGCA-CA 3241 AG|CAACU-- ---GU(UUAA CAAAA)ACAC AGGUCUCUG| CUAAAGC(GA AA------)G 3301 CUGAUGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGG GGAACACUUA 3361 GC-------- (G-UAA)--- --------GC GA-AGGUGUG AACUUAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCAGG(U 3481 AAGU)UCUGA C|CCGCACGA AUGGCGUAAU GA-CUUGUGC ACUGUCUCAA CUGCAAAUCC 3541 G|GCGAAGUU |GUAGUGC-G AG(UGAAGAU G)CUCGCUAC CCGCGAU-UG GACGGAAAGA 3601 CCCCGUAG|A GCU-UUACUG U|AGCUUAGC AUU|GAAUUU CGGUAUUGUC UGUACAGGAU 3661 AGGUGGGAGA CUGGGAAA-- UCAGAGC(GU CA)GCUUUGA UGGAGUCAUC -C-UUGGGAU 3721 ACCACC|CUG A-UAGUACUG GAA-UUCUAA -CUGGAU--- -GCCA(-uga -auc)-UGGU 3781 GACAG-GACA UUGUUAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAAG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAACGG(U CGGAAA)UCG UUCGUA-GA| 3901 GU(G|CAAAG )GCAUAAGGG AGCCUGACUG CGAGAC(CUA CAA)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUAC CU(CGUGGG) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCU|CGGG|G AUAACAG|GC UGA--UCUCC CCCAAGA(G- UUC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GAAG 4141 U---A)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGCAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-CAG 4261 GAAAUUU|GA -|GAAGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACC GACCUAUGGU GUACCAGU|U GUUUC(GC-C A-)GAAGCA- UAGCUGGGUA 4381 GCU-AAGUCG GGACGGGAUA AACGCU(GAA AGCAUCUA)A GCGUGAAGCC UCCUUC|AAG 4441 AUGAGAUUUC C|CA|UAGC- -(-GUAA-)- -NNUA--GU- AAGA|-CC|C CUUG-(AAGA 4501 CU-A)CAAGG -UUGAUAG|G UCAG|AGGUG -UAAGUGUG- -(GCAA-)-- CAUAU|UU-A 4561 GCUG|A|UUG AUACUAAUA- GGUC-GAGG| GCUUGA-CCA A-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.botul.2b 4759 bp RNA RNA 11-JAN-191 DEFINITION Clostridium botulinum str. strain serotype b. ACCESSION No information KEYWORDS No information. SOURCE Clostridium botulinum str. strain serotype b. ORGANISM Clostridium botulinum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: M94178 LOCUS CLORDGA 2910 bp ds-DNA BCT 07-JUN-1993 DEFINITION Clostridium botulinum type b 23S ribosomal RNA. ACCESSION M94178 KEYWORDS 23S ribosomal RNA. SOURCE Clostridium botulinum (strain serotype b) DNA. ORGANISM Clostridium botulinum Prokaryotae; Firmicutes; Endospore-forming rods and cocci; Bacillaceae. REFERENCE 1 (bases 1 to 2910) AUTHORS Campbell,K.D., East,A.K., Thompson,D.E. and Collins,M.D. TITLE Studies on the large subunit ribosomal RNA genes and intergenic spacer regions of non-proteolytic Clostriduim botulinum types B, E, and F JOURNAL Res. Microbiol. (1993) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA <1..>2910 /product="23S ribosomal RNA" source 1..2910 /organism="Clostridium botulinum" /strain="serotype b" /sequenced_mol="DNA" BASE COUNT 844 a 587 c 857 g 620 t 2 others ORIGIN BASE COUNT 844 a 587 c 857 g 620 t 1851 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UCAAGCUAC- --AAAGGGCG CAUGGUGAAU 121 G|CCUUGG|C AUCAGG|AG| CC-GAUGAAG GA|CGCG(AU AA-GC-)U|- GCG-AUAAGC 181 UUCGGG|-UA GAC(G-CA-C AUA-)GUCAG AG-AUC-CGA AGAUU|UCCG AAUGAG(GAA 241 A)CUC|ACAU GGG-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---aaac-)- CCCAUGU-AU CG-UAAAGU( 481 GA-AUACA-- UA)GCU-UUA -U-G--AAG- GUAAAC|CC- AGGGAACU|G A(AACA)UCU 541 AAGUA-CCUG GAGGAAGAGA AAGA(-AAAA --)UCGAU|U UU-CUUAGUA GC(GGCGA)G 601 CGA-AAG-GG AA-AGA-GCC CAAAccaaag -a-------- -----(uuua -)-------- 661 -----ucuuu gggguugcgg ac--agaaca uuaa------ ---------- ---------- 721 ---------- ---cgagaaa uuaugguu-a accGAAcaca a-c(u-ggaa a)g-uuggac 781 |c(gua)ggG GG(UAAUAGU )CCUGU-Agg u-gaaaauua uaauuauca- ---------- 841 ---------- --aguucuga -ucca---GA GUACCACGAG A(CACGUG-A AA)UCUUGUG 901 GGAAGCA-GG G-AG(GACCA C)CU-CCC-A AGGCUAA--- -AUACUACCU GAUGACCGAU 961 AGUG-AAG-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G AACCCC(GG- GA-)GGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAU-GUGCC UACAA-C-CG AUCAAAGCAC --c------- 1081 --------(- ---uuaug-) ---------- -----u-GUG UGAUGAUGUG CUU(UUU-GU 1141 AG|A)ACGA| -GCCAACGAG UUAC-GGUA- UGUAGC-AAG GUUAAGUAC( -uuaag)GUA 1201 C-GGAGCCGA AGG(GAAA-) CCGAGUCU(U AA-UA)GGGC GA-------- ---------- 1261 ---------- ------c-ua G-UUGCAUGC UGUA-GACCC GAAAC-CGG- GUGA-CCUAU 1321 CCAUGGC|CA GGUUGAAGCG AGGG(UAAA) AC-CUCGUGG AGGACCGAAC CAUGUUGCU( 1381 -GUUGAAAA) AGCAU|GGG- AUGAG-CUGU GGAUAGCGGA (-GAAAC)UC CAAUCGAACU 1441 CGGAUAUAGC UGGUUCUCCU CGAAAUAGCU (-UUAG)GGC UAGC|-GUCG GAAaa-ugu| 1501 -gag|UACUG G|GGGUAG|A GC-ACUGA-A UGGGCUA-GG |-GGGCA(ua g--)CGCUUA 1561 CCGAACCUUA -UCAAACUCC GAA-UA-|cc a-gau-a--- cuau---ca| gUC-CGGCAG 1621 UCAGAC--UG C-GAAA(GAU AAG)UUCCGU -AGUC-AAAA GGG(-AAACA G-)CCCAGAU 1681 CGUCAGCUAA G-GU|CCCA- AAGUG-UAAG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 GAUUUCUAA- GACAACUAGG AUGUUGGC(U UAGAAGCA)G CCACUCAU|U (AAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUA GU-----CAA GA-GAU-CC- -UGC|GCCGA AAAU-GUCC- 1861 GGGGCUC-AA ACUUA-C|C| ACCGAAGCU| ACGG|guuca cac----(au ua-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -gugugagc- GG-UAGAGGA G|-----CGU 2221 C-GUA-AU-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --C-GGGC-U 2341 GAAGUCG-U- A-CC(-GUAA -)GGA--GCG GUGG|ACUGA U-UACGAGUG AGAAUGU-UG 2401 GC|AUU-AGU A--GCGAGA- UGUGGG(UGA GAAU)CCCAU A|GGCC-GAA UACCUAAGGU 2461 UUCCUC-AGG AAGG-(UUCG U)CC|G-CUG AGGGUUAGU| CGG|G-ACCU AAGCUGAGGC 2521 C(GAAA)-G- GCGU-AAGCG AUGG-ACAAU CGG-(UU-GA UAUU)C-CGA U|AC|CA-c- 2581 ua-u-u--au c-guua---- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---uuaucga u------ggu g--uga-cgg agaaggaua- ggau-gu|gc u-agc(uau- 2761 -uggau---- --)gc-uagu -|cuaa---- ---------- ---gcgu-uu aggga----- 2821 --guuag-aa uagg(ca-aa -u-)cc|g-- uucuaacaa- ---------- uucu-gaggc 2881 gug-augg|g ga-|------ -----agguu c(-caag--) gaacc----- ------gaag 2941 --uaucu-ga uucc-aug-| cuuccaagaa a-agcauc-u a-gaaa---- ------ga-g 3001 -aaaua--gu g|C|CCGUAC CGCAAACC(G ACACA)GG|U AG-GUGAGG- A-(GAGGA)U 3061 CCUAAGGCCG ||GCGGAAGA AUUGCAGUU- ---------- ----AAGGAA CUAGGCAAAU 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCCUGC--- ---------- ---------- 3181 -(-gaga-)- ---------- ---------- --GCAGG-C| C(GCA)GAGA AUAGGCA-CA 3241 AG|CAACU-- ---GU(UUAA CAAAA)ACAC AGGUCUCUG| CUAAAGC(GA AA------)G 3301 CUGAUGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGG GGAACACUUA 3361 GU-------- (G-UAA)--- --------GC GA-AGGUGUG AACUUAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCAGG(U 3481 AAGU)UCUGA C|CCGCACGA AUGGCGUAAU GA-CUUGUGC ACUGUCUCAA CUGCAAAUCC 3541 G|GCGAAGUU |GUAGUGC-G AG(UGAAGAU G)CUCGCUAC CCGCGAU-UG GACGGAAAGA 3601 CCCCGUAG|A GCU-UUACUG U|AGCUUAGC AUU|GAAUUU CGGUAUUGUC UGUACAGGAU 3661 AGGUGGGAGA CUGGGAAA-- UCAGAGC(GU CA)GCUUUGA UGGAGUCAUC -C-UUGGGAU 3721 ACCACC|CUG A-UAGUACUG GAA-UUCUAA -CUGGAU--- -GCCA(-uga -auc)-UGGU 3781 GACAG-GACA UUGUUAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAAG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAACGG(U CGGAAA)UCG UUCGUA-GA| 3901 GU(G|CAAAG )GCAUAAGGG AGCCUGACUG CGAGAC(CUA CAA)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUAC CU(CGUGGG) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCU|CGGG|G AUAACAG|GC UGA--UCUCC CCCAAGA(G- UUC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GAAG 4141 U---A)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGCAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-CAG 4261 GAAAUUU|GA -|GAAGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACC GACCUAUGGU GUACCAGU|U GUUUC(GC-C A-)GAAGCA- UAGCUGGGUA 4381 GCU-AAGUCG GGACGGGAUA AACGCU(GAA AGCAUCUA)A GCGUGAAGCC UCCUUC|AAG 4441 AUGAGAUUUC C|CA|UAGC- -(-GUAA-)- -NNUA--GU- AAGA|-CC|C CUUG-(AAGA 4501 CU-A)CAAGG -UUGAUAG|G UCAG|AGGUG -UAAGUAUG- -(GCAA-)-- CAUAU|UU-A 4561 GCUG|A|CUG AUACUAAUA- GGUC-GAGG| GCUUGA-CCA A-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.botuli.e 4759 bp RNA RNA 11-JAN-191 DEFINITION Clostridium botulinum. ACCESSION No information KEYWORDS No information. SOURCE Clostridium botulinum. ORGANISM Clostridium botulinum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: M94261 LOCUS CLORDGC 2910 bp ds-DNA BCT 07-JUN-1993 DEFINITION Clostridium botulinum type e 23S ribosomal RNA. ACCESSION M94261 KEYWORDS 23S ribosomal RNA. SOURCE Clostridium botulinum (strain serotype e) DNA. ORGANISM Clostridium botulinum Prokaryotae; Firmicutes; Endospore-forming rods and cocci; Bacillaceae. REFERENCE 1 (bases 1 to 2910) AUTHORS Campbell,K.D., East,A.K., Thompson,D.E. and Collins,M.D. TITLE Studies on the large subunit ribosomal RNA genes and intergenic spacer regions of non-proteolytic Clostriduim botulinum types B, E, and F JOURNAL Res. Microbiol. (1993) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA <1..>2910 /product="23S ribosomal RNA" source 1..2910 /organism="Clostridium botulinum" /strain="serotype e" /sequenced_mol="DNA" BASE COUNT 846 a 589 c 857 g 617 t 1 others ORIGIN BASE COUNT 846 a 589 c 857 g 617 t 1850 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UCAAGCUAC- --AAAGGGCG CAUGGUGAAU 121 G|CCUUGG|C AUCAGG|AG| CC-GAUGAAG GA|CGCG(AU AA-GC-)U|- GCG-AUAAGC 181 UUCGGG|-UA GAC(G-CA-C AUA-)GUCAG AG-AUC-CGA AGAUU|UCCG AAUGAG(GAA 241 A)CUC|ACAU GGG-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---aaac-)- CCCAUGU-AU CG-UAAAGU( 481 GA-AUACA-- UA)GCU-UUA -U-G--AAG- GUAAAC|CC- AGGGAACU|G A(AACA)UCU 541 AAGUA-CCUG GAGGAAGAGA AAGA(-AAAA --)UCGGU|U UU-CUUAGUA GC(GGCGA)G 601 CGA-AAG-GG AA-AGA-GCC CAAAccaaag -a-------- -----(uuua -)-------- 661 -----ucuuu gggguugcgg ac--agaaca uuaa------ ---------- ---------- 721 ---------- ---cgagaaa uuaugguu-a accGAAcaca a-c(u-ggaa a)g-uuggac 781 |c(gua)ggG GG(UAAUAGU )CCUGU-Agg u-gaaaauua uaaugauca- ---------- 841 ---------- --aguucuga -ucca---GA GUACCACGAG A(CACGUG-A AA)CCUUGUG 901 GGAAGCA-GG G-AG(GACCA C)CU-CCC-A AGGCUAA--- -AUACUACCU GAUGACCGAU 961 AGUG-AAG-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G AACCCC(GG- GA-)GGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAU-GUGCC UACAA-C-CG AUCAAAGCAC --c------- 1081 --------(- ---uuaug-) ---------- -----u-GUG UGAUGAUGUG CUU(UUU-GU 1141 AG|A)ACGA| -GCCAACGAG UUAC-GGUA- UGUAGC-AAG GUUAAGUAC( -uuaag)GUA 1201 C-GGAGCCGA AGG(GAAA-) CCGAGUCU(U AA-UA)GGGC GA-------- ---------- 1261 ---------- ------c-ua G-UUGCAUGC UGUA-GACCC GAAAC-CGG- GUGA-CCUAU 1321 CCAUGGC|CA GGUUGAAGCG AGGG(UAAA) AC-CUCGUGG AGGACCGAAC CACGUUGCU( 1381 -GUUGAAAA) AGCAU|GGG- AUGAG-CUGU GGAUAGCGGA (-GAAAU)UC CAAUCGAACU 1441 CGGAUAUAGC UGGUUCUCCU CGAAAUAGCU (-UUAG)GGC UAGC|-GUCG GAAaa-ugu| 1501 -gag|UACUG G|GGGUAG|A GC-ACUGA-A UGGGCUA-GG |-GGGCA(ua g--)CGCUUA 1561 CCGAACCUUA -UCAAACUCC GAA-UA-|cc a-gau-a--- cuau---ca| gUC-CGGCAG 1621 UCAGAC--UG C-GAAA(GAU AAG)UUCCGU -AGUC-AAAA GGG(-AAACA G-)CCCAGAU 1681 CGUCAGCUAA G-GU|CCCA- AAGUG-UAAG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 GAUUUCUAA- GACAACUAGG AUGUUGGC(U UAGAAGCA)G CCACUCAU|U (AAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUA GU-----CAA GA-GAU-CC- -UGC|GCCGA AAAU-GUCC- 1861 GGGGCUC-AA ACUUA-A|C| ACCGAAGCU| ACGG|guuca cac----(aa ua-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -gugugagc- GG-UAGAGGA A|-----CGU 2221 C-GUA-AU-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --C-GGGC-U 2341 GAAGUCG-U- A-CC(-AUAA -)GGA--GCG GUGG|ACUGA U-UACGAGUG AGAAUGU-UG 2401 GC|AUU-AGU A--GCGAGA- UGUGGG(UGA GAAU)CCCAC A|GGCC-GAA UACCUAAGGU 2461 UUCCUC-AGG AAGG-(UUCG U)CC|G-CUG AGGGUUAGU| CGG|G-ACCU AAGCUGAGGC 2521 C(GAAA)-G- GCGU-AAGCG AUGG-ACAAU CGG-(UU-GA UAUU)C-CGA U|AC|CA-c- 2581 ua-u-u--au c-guua---- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---uuaucga u------ggu g--uga-cgg agaaggaua- ggau-gu|gc u-agc(uau- 2761 -uggau---- --)gc-uagu -|cuaa---- ---------- ---gcgu-uu aggga----- 2821 --guuag-aa uagg(ca-aa -u-)cc|g-- uucuaacaa- ---------- uucu-gaggc 2881 gug-augg|g ga-|------ -----agguu c(-uaag--) gaacc----- ------gaag 2941 --uaucu-ga uucc-aug-| cuuccaagaa a-agcauc-u a-gaaa---- ------ga-g 3001 -aaaua--gu g|C|CCGUAC CGCAAACC(G ACACA)GG|U AG-GUGAGG- A-(GAGAA)U 3061 CCUAAGGCCG ||GCGGAAGA AUUGCAGUU- ---------- ----AAGGAA CUAGGCAAAU 3121 UGACCCCGUA AC(-UUCG)U GAGAAGGGGU |GCCUGC--- ---------- ---------- 3181 -(-gaga-)- ---------- ---------- --GCAGG-C| C(GCA)GAGA AUAGGCA-CA 3241 AG|CAACU-- ---GU(UUAA CAAAA)ACAC AGGUCUCUG| CUAAAGC(GA AA------)G 3301 CUGAUGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGG GGAACACUUA 3361 GC-------- (G-UAA)--- --------GC GA-AGGUGUG AACUUAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUGGC G-AAAUUCCU U|GUCAGG(U 3481 AAGU)UCUGA C|CCGCACGA AUGGCGUAAU GA-CUUGUGC ACUGUCUCAA CUGCAAAUCC 3541 G|GCGAAGUU |GUAGUGC-G AG(UGAAGAU N)CUCGCUAC CCGCGAU-UG GACGGAAAGA 3601 CCCCGUAG|A GCU-UUACUG U|AGCUUAGC AUU|GAAUUU CGGUAUUGUC UGUACAGGAU 3661 AGGUGGGAGA CUGGGAAA-- UCAGAGC(GU CA)GCUUUGA UGGAGUCAUC -C-UUGGGAU 3721 ACCACC|CUG A-UAGUACUG GAA-UUCUAA -CUGGAU--- -GCCA(-uga -auc)-UGGU 3781 GACAG-GACA UUGUUAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAAG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAACGG(U CGGAAA)UCG UUCGUA-GA| 3901 GU(G|CAAAG )GCAUAAGGG AGCCUGACUG CGAGAC(CUA CAA)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUAC CU(CGUGGG) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCU|CGGG|G AUAACAG|GC UGA--UCUCC CCCAAGA(G- UUC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GAAG 4141 U---A)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGCAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-CAG 4261 GAAAUUU|GA -|GAAGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACC GACCUAUGGU GUACCAGU|U GUUUC(GC-C A-)GAAGCA- UAGCUGGGUA 4381 GCU-AAGUCG GGACGGGAUA AACGCU(GAA AGCAUCUA)A GCGUGAAGCC UCCUUC|AAG 4441 AUGAGAUUUC C|CA|UAGC- -(-GUAA-)- -CGUA--GU- AAGA|-CC|C CUUG-(AAGA 4501 CU-A)CAAGG -UUGAUAG|G UCAG|AGGUG -UAAGUGUG- -(GCAA-)-- CAUAU|UU-A 4561 GCUG|A|CUG AUACUAAUA- GGUC-GAGG| GCUUGA-CCA A-------|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.botuli.f 4759 bp RNA RNA 11-JAN-191 DEFINITION Clostridium botulinum. ACCESSION No information KEYWORDS No information. SOURCE Clostridium botulinum. ORGANISM Clostridium botulinum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: M94260 LOCUS CLORDGE 2770 bp ds-DNA BCT 07-JUN-1993 DEFINITION Clostridium botulinum 23S ribosomal RNA. ACCESSION M94260 KEYWORDS 23S ribosomal RNA. SOURCE Clostridium botulinum DNA. ORGANISM Clostridium botulinum Prokaryotae; Firmicutes; Endospore-forming rods and cocci; Bacillaceae. REFERENCE 1 (bases 1 to 2770) AUTHORS Campbell,K.D., East,A.K., Thompson,D.E. and Collins,M.D. TITLE Studies on the large subunit ribosomal RNA genes and intergenic spacer regions of non-proteolytic Clostriduim botulinum types B, E, and F JOURNAL Res. Microbiol. (1993) In press STANDARD full automatic FEATURES Location/Qualifiers rRNA <1..>2770 /product="23S ribosomal RNA" source 1..2770 /organism="Clostridium botulinum" /sequenced_mol="DNA" BASE COUNT 802 a 567 c 825 g 576 t ORIGIN BASE COUNT 802 a 567 c 825 g 576 t 1989 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UCAAGCUAC- --AAAGGGCG CAUGGUGAAU 121 G|CCUUGG|C AUCAGG|AG| CC-GAUGAAG GA|CGCG(AU AA-GC-)U|- GCG-AUAAGC 181 UUCGGG|-UA GAC(G-CA-C AUA-)GUCAG AG-AUC-CGA AGAUU|UCCG AAUGAG(GAA 241 A)CUC|ACAU GGG-(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---aaac-)- CCCAUGU-AU CG-UAAGGU( 481 GA-AUACA-- UA)GCU-UUA -U-G--AAG- GUAAAC|CC- AGGGAACU|G A(AACA)UCU 541 AAGUA-CCUG GAGGAAGAGA AAGA(-AAAA --)UCGAU|U UU-CUUAGUA GC(GGCGA)G 601 CGA-AAG-GG AA-AGA-GCC CAAAccaaag -a-------- -----(uuua -)-------- 661 -----ucuuu gggguugcgg ac--agaaca uuaa------ ---------- ---------- 721 ---------- ---cgagaaa uuaugguu-a accGAAcaca a-c(u-ggga a)g-uuggac 781 |c(gua)ggG GG(UAAUAGU )CCUGU-Agg u-gaaaauua uaaugauca- ---------- 841 ---------- --aguucuga --cca---GA GUACCACGAG A(CACGUG-A AA)CCUCGUG 901 GGAAGCA-GG G-AG(GACCA C)CU-CCC-A AGGCUAA--- -AUACUACCU GAUGACCGAU 961 AGUG-AAG-C AGUACC(GUG A)-GGGA-AA GGUGAAAA-G AACCCC(GG- GA-)GGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCAU-GUGCC UACAA-C-CG AUCAAAGCAC --c------- 1081 --------(- ---uuaug-) ---------- -----u-GUG UGAUGAUGUG CUU(UUU-GU 1141 AG|A)ACGA| -GCCAACGAG UUAC-GGUA- UGUAGC-AAG GUUAAGUAC( -uuaag)GUA 1201 C-GGAGCCGA AGG(GAAA-) CCGAGUCU(U AA-UA)GGGC GA-------- ---------- 1261 ---------- ------c-ua G-UUGCAUGC UGUA-GACCC GAAAC-CGG- GUGA-CCUAU 1321 CCAUGGC|CA GGUUGAAGCG AGGG(UAAA) AC-CUCGUGG AGGACCGAAC CACGUUGCU( 1381 -GUUGAAAA) AGCAU|GGG- AUGAG-CUGU GGAUAGCGGA (-GAAAU)UC CAAUCGAACU 1441 CGGAUAUAGC UGGUUCUCCU CGAAAUAGCU (-UUAG)GGC UAGC|-GUCG GAAaa-ugu| 1501 -gag|UACUG G|GGGUAG|A GC-ACUGA-A UGGGCUG-GG |-GGGCA(ua g--)CGCUUA 1561 CCGAACCUUA -UCAAACUCC GAA-UA-|cc a-gau-a--- cuau---ca| gUC-CGGCAG 1621 UCAGAC--UG C-GAAA(GAU AAG)UUCCGU -AGUC-AAAA GGG(-AAACA G-)CCCAGAU 1681 CGUCAGCUAA G-GU|CCCA- AAGUG-UAAG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 GAUUUCUAA- GACAACUAGG AUGUUGGC(U UAGAAGCA)G CCACCCAU|U (AAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUA GU-----CAA GA-GAU-CC- -UGC|GCCGA AAAU-GUCC- 1861 GGGGCUC-AA ACUUA-C|C| ACCGAAGCU| ACGG|guuca cac----(aa ua-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -gugugagc- GG-UAGAGGA G|-----CGU 2221 C-GUA-AU-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --C-GGGC-U 2341 GAAGUCG-U- A-CC(-GUAA -)GGA--GCG GUGG|ACUGA U-UACGAGUG AGAAUGU-UG 2401 GC|AUU-AGU A--GCGAGA- UGUGGG(UGA GAAU)CCCAC A|GGCC-GAA UACCUAAGGC 2461 UUCCUC-AGG AAGG-(CUCG U)CC|G-CUG AGGGUUAGU| CGG|G-ACCU AAGCUGAGGC 2521 C(GAAA)--- GCGU-AAGCG AUGG-ACAAU CGG-(UU-GA UAUU)C-CGA U|AC|CA-c- 2581 ua-u-u--au c-guua---- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---uuaucga u------ggu g--uga-cgg agaaggaua- ggau-gu|gc u-agc(uau- 2761 -uggau---- --)gc-uagu -|cuaa---- ---------- ---gcgu-uu aggga----- 2821 --guuag-aa uagg(ca-aa -u-)cc|g-- uucuaacaa- ---------- uucu-gaggc 2881 gug-augg|g ga-|------ -----agguu c(-uaag--) gaacc----- ------gaag 2941 --uaucu-ga uucc-aug-| cuuccaagaa a-agcauc-u a-gaaa---- ------ga-g 3001 -aaaua--gu g|C|CCGUAC CGCAAACC(G ACACA)GG|U AG-GUGAGG- A-(GAGAA)U 3061 CCUAAGGCCG ||GCGGAAGA AUCGCAGUU- ---------- ----AAGGAA CUAGGCAAAU 3121 UGACCCCGUA AC(-UUCG)G GAGAAGGGGU |GCCUGC--- ---------- ---------- 3181 -(-gaga-)- ---------- ---------- --GCAGG-C| C(--A)GAGA AUAGGCA-CA 3241 AG|CAACU-- ---GU(UUAA CAAAA)ACAC AGGUCUCUG| CUAAAGC(GA AA------)G 3301 CUGAUGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGG GGAACACUUA 3361 GC-------- (G-UAA)--- ---------C GA-AGGUGUG AACUUAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCAGG(U 3481 AAGU)UCUGA C|CCGCACGA AUGGCGUAAU GA-CUUGUGC ACUGUCUCAA CUGCAAAUCC 3541 G|GCGAAGUU |GUAGUGC-G AG(UGAAGAU G)CUCGCUAC CCGCGAU-UG GACGGAAAGA 3601 CCCCGUAG|A GCU-UUACUG U|AGCUUAGC AUU|GAAUUU CGGUAUUGUC UGUACAGGAU 3661 AGGUGGGAGA CUGGGAAA-- UCAGAGC(GU CA)GCUUUGA UGGAGUCAUC -C-UUGGGAU 3721 ACCACC|CUG A-UAGUACUG GAA-UUCUAA -CUGGAU--- -GCCA(-uga -auc)-UGGU 3781 GACAG-GACA UUGUUAGGUG GG-CAGUUUG ACUG(GGG)C GGUC|GC-UC C(UAA-AAAG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAACGG(U CGGAAA)UCG UUCGUA-GA| 3901 GU(G|CAAAG )GCAUAAGGG AGCCUGACUG CGAGAC(CUA CAA)GUCGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUAC CU(CGUGGG) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCU|CGGG|G AUAACAG|GC UGA--UCUCC CCCAAGA(G- UUC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GAAG 4141 U---A)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGCAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-CAG 4261 GAAAUUU|GA -|GAAGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACC GACCUAUGGU GUACCAGU|U GUUUC(GC-C A-)GAAGCA- UAGCUGGGUA 4381 GCU-AAGUCG GGACGGGAUA AACGCU(GAA AGCAUCUA)A GCGUGAA~~~ ~~~~~~|~~~ 4441 ~~~~~~~~~~ ~|~~|~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~|~~~|~ ~~~~~(~~~~ 4501 ~~~~)~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~|~~~~ 4561 ~~~~|~|~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| // LOCUS C.tyrobuty 4759 bp RNA RNA 11-JAN-191 DEFINITION Clostridium tyrobutyricum. ACCESSION No information KEYWORDS No information. SOURCE Clostridium tyrobutyricum. ORGANISM Clostridium tyrobutyricum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4759) Corresponding GenBank entry: L08062 LOCUS CLORGADG 5403 bp ds-DNA BCT 18-DEC-1992 DEFINITION Clostridium tyrobutyricum 5S, 16S and 23S ribosomal RNA (rRNA) complete genes. ACCESSION L08062 KEYWORDS 16S ribosomal RNA; 23S ribosomal RNA; 5S ribosomal RNA. SOURCE Clostridium tyrobutyricum (strain NIZO 51) DNA. ORGANISM Clostridium tyrobutyricum Prokaryotae; Firmicutes; Endospore-forming rods and cocci; Bacillaceae. REFERENCE 1 (bases 1 to 5403) AUTHORS van der Meer,J.R., Ludwig,W. and de Vos,W.M. TITLE Characterization of a ribosomal RNA gene cluster from Clostridium tyrobutyricum: phylogenetic positioning based on the 16S and 23S nucleotide sequences JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers enhancer 78..99 promoter 207 promoter 315 rRNA 468..1980 /product="16S ribosomal RNA" /gene="16S rRNA" /note="putative" rRNA 2217..5106 /product="23S ribosomal RNA" /gene="23S rRNA" /note="putative" rRNA 5319..5403 /product="5S ribosomal RNA" /gene="5S rRNA" /note="putative" BASE COUNT 1631 a 1048 c 1500 g 1224 t ORIGIN BASE COUNT 829 a 603 c 856 g 602 t 1869 others ORIGIN 1 ---------- ---------- ---------- ---------- ---------- ---------- 61 ---------- --------|- --------GG UCAAGCUAC- --AAAGGGCG CAUGGUGAAU 121 G|CCUUGG|C ACCAGG|AG| CC-GACGAAG GA|CGCG(AU AA-GC-)U|- GCG-AUAAGC 181 UUCGGG|-UA GAC(G-CA-A AUA-)GUCUG UG-AAC-CGA AGAUU|UCCG AAUGGG(GAA 241 A)CCC|ACAA UG--(----- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ----cuug)- -CAUUGU-AC UA-UAAACU( 481 GA-AUUCA-- UA)GGU-UUA -U-A--GAG- GUAAAC|CC- GGGGAACU|G A(AACA)UCU 541 AAGUA-CCCG GAGGAAGAGA AAGA(-AACA --)UCGAU|U UU-CUUAGUA GC(GGCGA)G 601 CGA-AAG-GG AA-AGA-GCC CAAAccagga -a-------- -----(cuug -)-------- 661 -----uuccu gggguaaggg ua--gacaua acgg------ ---------- ---------- 721 ---------- -----aagga aauaaguu-a acuGAAguga g-c(u-ggaa g)g-cuccgc 781 |c(aaa)gaA GG(UAAAAGC )CCUGU-Aag u-gaaaauua aagcuucc-- ---------- 841 ---------- ----agucua uucca---GA GUACCACGAG A(CACGUG-A AA)CCUUGUG 901 GGAAUGC-GG G-AG(GACCA C)CU-CCU-A AGGCUAA--- -AUACUACCU GGUGACCGAU 961 AGUG-AAG-A AGUACC(GUG A)-GGGA-AA GGUGAAAA-G AACCCC(GG- AA-)GGGGA- 1021 -GUGAAA-UA GAACCUGAAA CCGU-GUGUC CACAA-C-CG AUCGAAGCAC ---------- 1081 --------(- --uuuuac-) ---------- -------GUG CGACGAUGUG CUU(UUU-GU 1141 AG|A)ACGA| -GCCAACGAG UUAC-GGUA- UGCAGC-AAG GUUAAGUAC( -uuaag)GUA 1201 C-GGAGCCGA AGG(GAAA-) CCGAGUCU(G AA-UA)GGGC GA-------- ---------- 1261 ---------- ------c-ua G-UUGCAUGC UGUA-GACCC GAAAC-CGA- GUGA-CCUAU 1321 CCAUGGC|CA GGUUGAAGCG GAAG(UAAA) AU-UCCGUGG AGGACCGAAC CACGUUGGU( 1381 -GUUGAAAA) ACCAU|GGG- AUGAG-CUGU GGAUAGCGGA (-GAAAU)UC CAAUCGAACU 1441 CGGAGAUAGC UGGUUCUCCU CGAAAUAGCU (-UUAG)GGC UAGC|-GUUG AGua----u| 1501 -gag|UAGUG G|AGGUAG|A GC-ACUGA-A UGGGCUA-GG |-GGCUG(ac aa-)CAGUUA 1561 CUGAACCCUA -UCAAACUCC GAA-UG-|cc a-uau-a--- cuug---aa| ucu-cAGCAG 1621 UCAGAC--UA C-GAAU(GAU AAG)AUCCGU -GGUC-AAAA GGG(-AAACA G-)CCCAGAU 1681 CAUCAGCUAA G-GU|CCCA- AAGUG-UAAG -U-UAA-GUG ------GAAA AGGAUGUG-G 1741 GAUUUCUAA- GACAACUAGG AUGUUGGC(U CAGAAGCA)G CCACuCAU|U (UAA)A|GAG 1801 UGC(GUAAUA )GC|UCACUA GU-----CGA GA-GGU-CC- -UGC|GCCGA AGAU-GUCC- 1861 GGGGCUA-AA ACUUA-C|C| ACCGAAGCU| AUGG|acuc- -------(ga aa-------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----)---- -----gagu- GG-UAGAGGA G|-----CUU 2221 C-CUG-CA-- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- --U-GGGU-U 2341 GAAGUCG-C- A-CC(-GUAA -)GGA--GCG GUGG|ACUGU G-CAGGAGUG AGAAUGU-UG 2401 GC|AUA-AGU A--GCGAGA- AAUAAG(UGA GAAU)CUUAU U|GGUC-GAA AACCUAAGGU 2461 UUCCUG-AGG AAGG-(UUCG U)CC|G-CUC AGGGUUAGU| CGG|G-ACCU AAGCCCAGGC 2521 C(GAAA)-G- GCGU-AGGCG AUGG-ACAAU CGG-(UU-GA UAUU)C-CGA U|AC|CG-c- 2581 aa-a-u-uug c-guu----- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---------- 2701 ---ugacaaa c------ggg a--uga-cgc aggaggaua- ggau-gu|gc a-cac(uau- 2761 -uggau-gu- --)gu-gucu -|aagc---- ---------- ---acuu-ag gcag------ 2821 ---gcug-ga uugg(aa-aa -u-)cc|g-- uucagucaau ---------- gcug-a-ggu 2881 guu-acag|g ga-|------ ------uccc u(-uucg--) gga------- ------gaag 2941 --uaucu-ga uucc-acg-| cugccaagaa a-agucuc-u a-ugga---- ------gu-a 3001 -aguuu--GU G|C|CCGUAC CGCAAACC(G ACACA)GG|U AG-GUGAGG- A-(GAGAA)U 3061 CCUAAGACCA ||UCGGAAGA AUUGUUGUU- ---------- ----AAGGAA CUAGGCAAAU 3121 UAACUCCGUA AC(-UUAG)G GAUAAGGAGU |GCCCC---- ---------- ---------- 3181 -(-gaaa-)- ---------- ---------- ---GGGG-C| C(GCA)GAGA AUAGGCU-CA 3241 AG|CAACU-- ---GU(UUAU CAAAA)ACAC AGGUCUCUG| CUAAAGC(GA AA------)G 3301 CUGAAGU-AU AGGGGCUGA- CGCCUGCCCG GU|GCUG-GA A-GGUUAAGG GGAAUACUUA 3361 GC-------- (G-CAA)--- --------GC GA-AGGUAUG AACUUAAGCC |CCAGUAAAC 3421 |-GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC G-AAAUUCCU U|GUCGGG(U 3481 AAGU)UCCGA C|CCGCACGA AUGGCGUAAU GA-UUUGAGC ACUGUCUCGA CAACAAAUCC 3541 G|GCGAAAUU |GUAGUGC-A AG(UGAAGAU G)CUUGCUAC CCGCGAU-UG GACGGAAAGA 3601 CCCCGUAG|A GCU-UUACUG C|AGUUUAGC AUU|GAGUUU CGGUAUUGUC UGUACAGGAU 3661 AGGUGGGAGA CUUGGAUA-- UUAGGGC(GC CA)GCCCUUU UGGAGUCGCC -C-UUGGGAU 3721 ACCACC|CUG A-CAGUACUG GAA-UUCUAA -CCGGCG--- -GCCA(-uga -aac)-UGGU 3781 CaCGG-GACA UUGUUAGGCA GG-CAGUUUG ACUG(GGG)C GGUC|GCCUC C(UAA-AAUG 3841 UAAC)GGAGG C|G|C|CCAA AGGUUCCC|U CAGAAGGG(U CGGAAA)UCC UUCGAA-GA| 3901 GU(G|CAAAG )GCAUAAGGG AGCCUGACUG CGACAC(AUA CAG)GUGGAG CAGGGAC(GA 3961 AA)GU-CGGG |CUUAGUGAU CCGGUGGUAC CU(CGUGGG) AGG|GCCAUC GCUCAAC|GG 4021 AUAAAAGCUA CCU|CGGG|G AUAACAG|GC UGA--UCUCC CCCAAGA(G- UCC-ACA)UC 4081 GACGGGG-AG GU-UUGGCAC CUCGAUGUC| GGCU|C|GUC GC|AUCC|UG GGGCU(GAAG 4141 U---A)-GGU CCCAAGGGU| UGGGC(UGUU C)GC-CCAUU AAAGCGGCAC G-CGAGCUGG 4201 GUUCA-GAAC |GUC(GUGA) -GACAGUU-C GGU-CCCUAU -CC|GUCGCG G-G|CG-CAG 4261 GAAAUUU|GA -|GAGGAGC- UGU------- -------CCU (UAGUAC(GA GA)GGACC)G 4321 GGAUGG|ACU GACCUCUGGU GUACCAGU|U GUUCC(GC-C A-)GGAGCA- UGGCUGGGUA 4381 GCU-AUGUCG GGAAGGGAUA AACGCU(GAA AGCAUCUA)A GCGUGAAGCC CACCUC|AAG 4441 AUUAGAUUUC C|CA|CAGC- -(-GUAA-)- -GCUG--GU- AAGG|-CC|C CUUG-(AAGA 4501 AC-A)CAAGG -U-GAUAG|G UCAG|AGGUG -UAAGCAUG- -(GCAA-)-- CAUGU|UC-A 4561 GCUG|A|CUG AUACUAAUA- GGCC-GAGG| GCUUGA-CCA A--auu--|~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~|||||| //