LOCUS E.coli 5239 bp RNA RNA 11-JAN-1980 DEFINITION Escherichia coli. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS No information JOURNAL E.coli:who:Published STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5239) Corresponding GenBank entry: J01695 Phylo:Eubacteria,Purple,gamma,3 BASE COUNT 762 a 639 c 912 g 591 t 2335 others ORIGIN 1 |--------- ---------- ---GGUUAAG CGAC---UAA GCGUACACGG UGGAUG|CCC 61 -UGG|CAGUC AG|AG|GCGA UGAAG-GA|C GUG(CUAA-- ----UC-)U| GCG-AUAAGC 121 GUCGGU|AAG GU(------- -----G-AU- AUGA------ -----)ACCG UUAUAACCGG 181 CGAUU|UCCG AA-UGGG(GA AA)CCC|AGU GUGU(----- -----UUCG) -ACACACUAU 241 CAUUAACU(G A-AUCCA--U A)GGU-UAA- ---U-G-AGG C-GAAC|CGG GGGAACU|GA 301 (AACA)UCUA AGU-ACCCCG AGGAAAAGAA AUC(AACC-- )GAG-AU|UC CCCCAGUAGC 361 -(GGCGA)GC GA-ACGGGGA -GCAGCCCA- ---------- ---------- (-------)- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------g agccugaauc 781 agugugugug uu-agugGAA gcgu-c(u-g gaaa)g-gcg -cgc|g(aua )caGGG(-UG 841 ACAGC)-CCC GUAcacaaaa augcaca-ug cug-----ug agcuc----- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------GA UGAGUAGGGC GGGA(CACGU 1141 GGUA)UCCUG UCUGAAUAUG GGGG(GACCA U)CCUCCAAG GCUAA-AUAC UCCUGACUGA 1201 CCGAUAGUGA ACCAGUACC( GUGA)GGGAA AGGCGAAAA- GAACCCC(GG CGA-)GGGGA 1261 GUGAAAAAGA ACCUGAAACC GU---GUACG UACAAGCAGU GGGAGCAC-G C--------- 1321 ------(--- uuag--)--- ---------- ---GCGU--G -UGACUGCGU ACCU(UUUGU 1381 AU|A)AUGG| GUCAGCGACU UAUAUUCUGU AGC------- -AAGGUU-AA CC--(----- 1441 GAAUA)--GG -GGAGCCGAA -GG(-GAAA) CCG----AGU CU(UAA-CU) GGGCGU---- 1501 ---------- ---------- ---------- ---u-aaGUU GCAGGGUAUA GACCCGAAAC 1561 CCGGUGAUCU AGCCAUGGG| CAGGUUGAAG GUUGGG(UAA C)ACUAACUG GAGGACCGAA 1621 CCGACUAAU( GUUGAAAA)A UUAG|CGGAU GACUUGUGGC UGG-GGGU(G AAAG)GCCAA 1681 UCAA-ACCGG GAGAUAGCUG GUUCUCCCCG -AAAGCUAU- (UUAG)-GUA GCGC|C-UCG 1741 UGAAU----- ---------- ---------U |-CAU-|-CU -CCGG|GGGU AG|-AGC-AC 1801 UGU-UUCGGC AA-GG|GGGU C(AUCCC)GA CUUACCA-AC CCGAU-GCAA ACUGCGAAUA 1861 |CCGGA-G-- ---------- ---------- --AAUGU--- UA|-UCAC-G G-GAGACACA 1921 CGGCGGGU(G CUAAC)GUCC GU--CGUGAA GAGGG(AAAC AA)CCCAGAC CGCCAGCUAA 1981 GGU|CCCA-A AGUC-AUGG- UUAAGUG--G GAAACGAUGU -GGGAAGGCC CA---GACAG 2041 CCAGGAUGUU GGC(UUAGAA GCA)GCCAU- CAU|--U(UA A)A|GAAAGC (GUAAUA)GC 2101 |UCACUGGU- CGAGUCGGCC UGC|GCGGAA GAUGUAACGG GGCU-----A AACCA-UG|C 2161 |ACCGAAGCU |GCGG|cagc gacgc---(u uau------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ------)--- -gcguuguug GGUAGGGGAG |CGUU-CUGU AAGCCUG-C- GAAGGUGUG- 2521 CU(GUGA)GG C-AUGCUGG| AGGUAUCAGA AGUGCGAAUG CUGAC|AUAA GUAACGAUAA 2581 AGCGGG(UGA AAA-G)CCCG CU|CGCCGGA AGACCA-AGG GUUCCUG-UC CAACG(UUAA 2641 U)CG|GGGCA GGGUGAGU|C GA|CCCCUAA GGCGAGGCC- --(-GAAA)- --GGCGUAGU 2701 CG-AUGG-GA AACAGG(UUA AUAUU)CCUG U|AC|uu-g- -guguu-acu ---------- 2761 ---------- ---------- ---------- gcgaa----- ggggggacgg ag--aaggcu 2821 a-uguug-|g -cc-ggg(-- cg--acgg-u -ugu------ ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- --------)c c-cggu-|uu aa-------- ---------g 3061 cgu-guaggc ---------- ---------- ---------- -----ugguu u-uccagg(c 3121 a-aa---u-) cc-|g--gaa aaucaa---- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- -----ggcu- 3301 gaggcgug-a uga|cga-|- ---------- ---------- ---------- ---------- 3361 -ggcac(--u ac-g--)gug cu-------- ---------- ---------- -------gaa 3421 gcaaca--aa ugcc-cug-| cuuccaggaa aagccuc--u aagcauca-- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- -gg-uaac-a ucaa|A|UCG UACCCCAAA- CC(GACACA) 3601 GG|---UGG- UC-AG-GUA- (-GAGAA)-U ACCAA-GG-C GC||UUGAGA GAACUCGGGU 3661 GAAGGAA-CU AGGCAAAAUG GUGCCGUAAC (UUCG)GGAG AAGGCAC|GC UGAUauguag 3721 gug-aggucc (-cucgc)gg aug----gag cugaaAUCAG U|C(GA-A)G AUACCAGCUG 3781 GCUG|CAACU GU(UUAUUAA AA)ACACAGC ACUGUG|CAA ACAC(GAAA) GUGGACGUAU 3841 ACGGUGUGAC GCC-UGCCCG GU|GCCGGAA GGUUAAUUGA UGGGGUUAGC --------(G 3901 -CAA)----- ---------- ---------- ---------- ---------G CGA-AGCUCU 3961 UGAUCGAAGC C|CCGGUAAA C|GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC 4021 GAAAUUCCUU |GUCGGG(UA AGU)UCCGAC |CUGCACGAA UGGCGUAAUG A-UGGCCAGG 4081 CUGUCUCCAC CCGAGACUCA |GUGAAAUU| GAACUCG-CU G(UG-AAGAU G)CAGUGUAC 4141 CCGCGGCAAG ACGG-AAAGA CCCCGUGA|A CCUUUACUAU |AGCUUGACA CU|GAAC-AU 4201 UGAGCCUUGA UGUGUAG-GA UAGGUGGGAG GCUUU-GAAG UGUGGAC(GC CA)GUCUGCA 4261 UGGAGCCGAC -CUUGAAAUA -CCACC|CU- UUAAUGUUU- GAUGUUCUAA -CGUUGA--- 4321 CCCG(----- ---UA-AUC) -CGGGUUGCG GACAGUGUCU GGUGGGUAGU UUGACUG(GG 4381 G)CGGUC|UC C-UCC(UAAA GAGUAAC)GG AGGA|G|C|A CGAAGGUUGG C|UAAUCCUG 4441 G--(UCGGAC A--)--UCAG GAGGU---UA |GU(G|CAAU G)GC-AUAA- --GCCAG--C 4501 UUGACUGCGA GCG(UGACGG )CGCGAGCAG GUGC(GAAA) GCAGGU|CAU AGUGAUCCGG 4561 UGGUU-CUG( AAUGGA)AGG |GCCAUCGCU CAAC|GGAUA AAAGGUACUC |CGGG|GAUA 4621 ACAG|GCUGA UACCGCCCAA GA(GUUCAUA )UCGACGGCG GUGUUUGGCA CCUCGAUGUC 4681 |GGCU|C|AU CAC|AUCC|U GGGGCU(GAA GUA)GGUC-C C-AAGGGU|A UGGC(UGUUC 4741 )GCCAUUU-A AAGUGGUACG CGAGCUGGGU UUAGAAC|GU C(GUGA)GAC AGUUCGGUCC 4801 CUAUCU|GCC GUGGG|CGCU GGAGAACU|G A|GGGGG-GC UGCUCC(UAG UAC(GAGA)G 4861 GA-CC)GGAG UGG|-ACGCA UCACUGGUGU UCGGGU|UGU CAU(GC-CA) AUGGCA-CUG 4921 CCCGGUAGCU AAAUGCGGAA G-AG-AUAAG UGCU(GAAAG CAUCUA)AGC ACGAAACUUG 4981 CCCC|GAGAU GAGUUCUCC| CU|GACCCU( -UUA--)AGG GUCCUG-AAG G|AA|CGUUG 5041 (AAGACGA)C GACG-UU--- ---------- ---------- -----GAUAG |GCCGG|GUG 5101 UGUAAGCGCA (GCGA)UGCG U|UGAGCUA| A|CCGGUACU AAUGAACCGU --GAG|GCUU 5161 AACCUU---| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS (1)-EUKARY 5239 bp RNA RNA 21-JAN-1998 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5239 others ORIGIN 1 |x~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 61 ~~~~|~~~~~ ~~|~~|~~~~ ~~~~~~~~|~ ~~~(~~~~~~ ~~~~~~~)~| ~~~~~~~~~~ 121 ~~~~~~|~~~ ~~(~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 181 ~~~~~|~~~~ ~~~~~~~(~~ ~~)~~~|~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~(~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~(~~~ )~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~------- 1321 ------~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 1381 ~~|~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 1801 ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~(~~ ~)~|~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~~-~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~-~~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~)~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~-~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~--~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~ // LOCUS (2)-Euglen 5239 bp RNA RNA 21-JAN-1998 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5239 others ORIGIN 1 |x~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 61 ~~~~|~~~~~ ~~|~~|~~~~ ~~~~~~~~|~ ~~~(~~~~~~ ~~~~~~~)~| ~~~~~~~~~~ 121 ~~~~~~|~~~ ~~(~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 181 ~~~~~|~~~~ ~~~~~~~(~~ ~~)~~~|~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~(~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~(~~~ )~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~------- 1321 ------~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 1381 ~~|~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 1801 ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~(~~ ~)~|~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~~-~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~-~~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~)~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~-~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~--~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~ // LOCUS chl.A.lo.1 5239 bp RNA RNA 11-JAN-191 DEFINITION Astasia longa chloroplast. ACCESSION No information KEYWORDS No information. SOURCE Astasia longa chloroplast. ORGANISM Astasia longa chloroplast. REFERENCE 1 AUTHORS No information JOURNAL who:Robin Gutell STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: X14386 BASE COUNT 1054 a 384 c 673 g 994 t 2134 others ORIGIN 1 |--------- ---------- --agauaaaa uuau---UAA GGGCUUAUGU GGGAUU|GCU 61 -UGG|CAUUU AA|GA|UCGA UGAAG-GG|C GUG(GAAA-- ----CU-)G| ACG-AUAUGC 121 UUUGGG|GAG UU(------- -----A-GA- AUCA------ -----)AAUU UUG-AUCCAA 181 AGAUU|CCCG AA-UGAG(GC AA)CUU|guu uagu(----- -auuaaaau) auuaa---ug 241 uAuagau-(- --auu----- -)---auuu- ---u-a-cAG A-uaAC|UCA GUGAACU|GA 301 (AACA)UCUU AGU-AACUGA AGGAAAAGAA AGC(AAAU-- )GCG-AU|UU CCUUAUUAGU 361 -(GGCGA)AC UA-AUUGGAA -UUAGUCUAA Accu------ ---------- (uauuau-)- 421 ---------- -----aggug uuguugggau auu------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------u uuugauuuaa 781 uuua-uuuuu aaauaaaGAA uuug-u(u-- aguu)a-caa -aac|c(aua )gaagg(uua 841 uuaGU)-CUU GUAuuuau-u uaaauauuua aau-agu--- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------u auuuuccc-- -GAGUAGUAU AGAA(CACGU 1141 GUAA)UUCUG UAUGAAUCUG CGAG(GACCA U)UUCGUAAG ACUAA-AUAU U-UUAAAUGA 1201 CCGAUAGUGA AUUAGUACC( GUGA)GGGAA AGCUGAAAA- GAACACU(ga -ga-)AGUGA 1261 GUGAAAUAGA AUAUGAAAAC AU---AAGCU UACAAACAGU AGGAGGuu-u u--------- 1321 ------(--- aaua--)--- ---------- ---aaaauuC -UGACUAUGU GCCU(GUUGA 1381 AG|A)AUGA| GCCGGCGACU UAUAAGUAGU GGC------- -AAGGUU-AA GGAA(----- 1441 uuuua)UUCU -GAAGCCUUA -GA(-GAAA) UCG----AGU UU(UAA-UA) AAGCUuuuau 1501 aauuuugu(u auuuuaauuu )auuuaauua uaa---uGUC AUUUUUUAUA GACCCGAACC 1561 CAGGUGAUCU AAUCAUUGU| CAGGUUGAAA UUUCUU(UAA A)AGGUAAUG GAGGACCGAA 1621 CUCACCAAU( GUUGAAAA)A UUGG|GAGAU GAACAAUGAU UAG-UGAA(G AAAU)UUCAA 1681 UCGA-ACUUG GAGAUAGCUG GAUCUCUCCG -AAAUGCGU- (UGAG)-GCG CAGC|AUUUA 1741 AUua------ ---------- --------ug |-uuu-|aau -AUAG|GGGU AA|-AGC-AC 1801 UGU-UUCUAU GA-AG|GUUA U(gaaa-)AU AAUACUA-AG UGGUG-GCAA ACUUUGAAUA 1861 |CUAUA-U-- ---------- ---------- uuuauua--- -c|-aAUU-A AUUAGUGAGA 1921 CAGUGGGG(G AUAAG)CUUC AU--UGUCGA GAGGG(AAAU AG)CCCAGAU CACUAUUUAA 1981 GGC|CCUU-A AAUA-AUUA- CUAAGUG--A UAAAGGAUGU -GAAUUUAUU UA---GACAA 2041 CUAGGAGGUU GGC(UUAGAA GCA)GCAAUU CCU|--U(UA A)A|AAGUGC (GUAAUA)GC 2101 |UUACUAGU- UAAAUGACUU UGC|GCCAAA AAUG-AAUGG GACU-----A AGUAA-UU|U 2161 |GCCGAAAAU |GUGG|ga-- --------(a uuauaa---- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ------)--- --------uc GGUAGGAGAG |CGUU-CUAU UUUGAAU-G- GAAGUAAUA- 2521 AC(GUAA)GU A-AUUAUAG| AUUAAAUAGA AGUGAGAAUG UCGGU|UUGA GUAACGAAAA 2581 CAUUGG(UGA AAA-U)CUAA UG|CUCCGAA AAUCUA-AGG GUUCCUU-AG CUAGG(UUCG 2641 U)CC|UCUGA GGGUUAAU|C AG|GUCCUAA AAUGAAGUC- --(-UAAA)- --GAUGUAAU 2701 UUGAUGG-UA AACAGG(UUA AUAUU)CCUG U|AU|ca-a- uuuuaauaau ---------- 2761 ---------- ---------- ------auaa aaa------- aaaguuacga aa--aaggcu 2821 aagucau-|c -ca-uaa(-- uuugguuuag uaauguaaaa auuuugauaa auuaauuuaa 2881 uuauguuuua uuaguauuga aaauaugagu uuggcgaagu auauacuaua augaaauuuu 2941 uauuuuuaua aauuuguaau uuuugauuug aaguauuaug aauauuaaua aauuauuuug 3001 ugauuuauuu uuguuuuugc auuauuuu)u u-augg-|uu ca-------- ---------a 3061 cugucugaga ug-------- ---------- ---------- ----uugaaa a-aua-uu(a 3121 u-aa---aa) aa-|u--auu ug-------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- -----aguu- 3301 uagguugg-a gua|cga-|- ---------- ---------- ---------- ---------u 3361 uaguau(--u au-g--)aua uuaa------ ---------- ---------- --------aa 3421 -gugaug-ua uguc-aug-| uuuccgagaa aagcuuu--u guuuuuaa-- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- aau-uuua-a auug|c|CUG UACCAUAAA- CU(GACACA) 3601 AG|---UGG- AU-UG-GUU- (-GAGUA)-U ACUAA-GG-A GC||UCGGGA UAAUUCUUUC 3661 UAAGGAA-CU CGGCAAAAUA ACUUUGUAAC (UUAG)GGAU AAAAAGU|AC CUUU------ 3721 ---------- (--aaa-)-- ---------- -----AGAGG U|C(UC-A)G AAAAAAGGUC 3781 CAAG|CGACU GC(UUAACAA AA)GCACAAG UCUCCG|CGA AGUU(GAAA) UACGAUGUAU 3841 GGGGGCUGAG GCC-UGCUCA GU|GCAGGAA GGUUAAAGAA AUUGGUUAGC --------(G 3901 -UUA)----- ---------- ---------- ---------- ---------G CAA-AGCUAG 3961 UAACUGAAGC C|CCUGUGAA C|AGC|GGCA AU(AACUAUA )AUUGUC|C( UAA)GGUAGC 4021 GAAAUUCCUU |GUCGGG(UA AGU)UCCGAC |CCGCACGAA AGGUUUAACG A-UUUGGACG 4081 CUGUCUCAGA AAGAAACUCG |GUGAAAUA| GAAUUGA-CU G(UG-AAGAU G)CGGUCUAC 4141 UUGCACUUGG ACAG-AAAGA CCCUAUGA|A GCUUUACUGU |AACUUGAUA UU|GAUU-UU 4201 GAGUUUUACU UGCGCAG-AA UAAGUGGGAG GC-UA-UGAU AUUAUUU(UU AG)GGAUAAU 4261 UUGAGCUGUA aUAUGAGAUA -CCACU|CU- AGAUGGACU- AAAAAUCUAA -UAU-uua-A 4321 UCUU(---au uuuga-auu) -AAGUUGAUA GACAAUUUCA AGUGGACAGU UUUACUG(GG 4381 G)CGGUA|GC C-UCC(UAAA AGGUAAC)GG AGGC|G|U|A CAAAGGUUUU U|UCAAUUUA 4441 U--(AUGGUA A--)--UUAA AUAUA---GA |GC(G|UAAA G)GU-AUAA- --AAAAG--C 4501 UUGACUGUAA GAC(AUAUAA )GUCGAACAG GGAU(UAAA) GUCGGU|CUU AAUGAUCCGG 4561 CGAUA-CUG( GAUGGA)AAG |GUCGUCGC- AAAC|AGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUGA UCUCCCCCAA GA(GUUCAUA )UCGACGGGG AGGUUUGGCA CCUCGAUGUC 4681 |GGCU|C|AU CGC|AACC|U GGAGCG(GUA GUU)UGUU-U C-AAGGGU|U GGGC(UGUUC 4741 )GCCCAUU-A AAGCGGUACG UGAGCUGGGU UCAGAAC|GU C(GAGA)GAC AGUUCGGUCC 4801 AUAUCC|GGU GUGAG|CGUU AGAGUAUU|G A|AAGGA-UU UUUUCU(UAG UAC(GAGA)G 4861 GA-CC)AGAA AAA|-ACAUA CCUAUGGUAU ACCAGU|UUU UGU(AC-CA) GCAGAAUAUG 4921 CUGGGUAGCU ACGUAUGGA- GUGG-AUAAC UGCU(GAAAG CAUAUA)AGU AGGAAGCCUA 4981 CCUU|AAGAU AAGUACUCU| UU|------( ------)--- ---aau--ag a|UU|AUGGU 5041 (AAAAUUA)A CCGU-UA--- ---------- ---------- -----GAUAG |GUAUU|AGG 5101 UAUAAAAAUA (GUGA)UAU- -|UUAGCUG| A|GAUAUACU AAUAAAUCGA ---AA|AUUU 5161 UGucUauau| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS chl.A.lo.2 5239 bp RNA RNA 11-JAN-191 DEFINITION Astasia longa chloroplast. ACCESSION No information KEYWORDS No information. SOURCE Astasia longa chloroplast. ORGANISM Astasia longa chloroplast. REFERENCE 1 AUTHORS No information JOURNAL who:Robin Gutell STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: X14386 BASE COUNT 1054 a 384 c 673 g 994 t 2134 others ORIGIN 1 |--------- ---------- --agauaaaa uuau---UAA GGGCUUAUGU GGGAUU|GCU 61 -UGG|CAUUU AA|GA|UCGA UGAAG-GG|C GUG(GAAA-- ----CU-)G| ACG-AUAUGC 121 UUUGGG|GAG UU(------- -----A-GA- AUCA------ -----)AAUU UUG-AUCCAA 181 AGAUU|CCCG AA-UGAG(GC AA)CUU|--- ----(----- ---gu-uu-) --------ag 241 uauuaaaa(u auuaauguau a)gauauuau uu-u-a-cAG A-uaAC|UCA GUGAACU|GA 301 (AACA)UCUU AGU-AACUGA AGGAAAAGAA AGC(AAAU-- )GCG-AU|UU CCUUAUUAGU 361 -(GGCGA)AC UA-AUUGGAA -UUAGUCUAA Accu------ ---------- (uauuau-)- 421 ---------- -----aggug uuguugggau auu------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------u uuugauuuaa 781 uuua-uuuuu aaauaaaGAA uuug-u(u-- aguu)a-caa -aac|c(aua )gaagg(uua 841 uuaGU)-CUU GUAuuuau-u uaaauauuua aau-agu--- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------u auuuuccc-- -GAGUAGUAU AGAA(CACGU 1141 GUAA)UUCUG UAUGAAUCUG CGAG(GACCA U)UUCGUAAG ACUAA-AUAU U-UUAAAUGA 1201 CCGAUAGUGA AUUAGUACC( GUGA)GGGAA AGCUGAAAA- GAACACU(ga -ga-)AGUGA 1261 GUGAAAUAGA AUAUGAAAAC AU---AAGCU UACAAACAGU AGGAGGuu-u u--------- 1321 ------(--- aaua--)--- ---------- ---aaaauuC -UGACUAUGU GCCU(GUUGA 1381 AG|A)AUGA| GCCGGCGACU UAUAAGUAGU GGC------- -AAGGUU-AA GGAA(----- 1441 uuuua)UUCU -GAAGCCUUA -GA(-GAAA) UCG----AGU UU(UAA-UA) AAGCUuuuau 1501 aauuuugu(u auuuuaauuu )auuuaauua uaa---uGUC AUUUUUUAUA GACCCGAACC 1561 CAGGUGAUCU AAUCAUUGU| CAGGUUGAAA UUUCUU(UAA A)AGGUAAUG GAGGACCGAA 1621 CUCACCAAU( GUUGAAAA)A UUGG|GAGAU GAACAAUGAU UAG-UGAA(G AAAU)UUCAA 1681 UCGA-ACUUG GAGAUAGCUG GAUCUCUCCG -AAAUGCGU- (UGAG)-GCG CAGC|AUUUA 1741 AUua------ ---------- --------ug |-uuu-|aau -AUAG|GGGU AA|-AGC-AC 1801 UGU-UUCUAU GA-AG|GUUA U(gaaa-)AU AAUACUA-AG UGGUG-GCAA ACUUUGAAUA 1861 |CUAUA-U-- ---------- ---------- uuuauua--- -c|-aAUU-A AUUAGUGAGA 1921 CAGUGGGG(G AUAAG)CUUC AU--UGUCGA GAGGG(AAAU AG)CCCAGAU CACUAUUUAA 1981 GGC|CCUU-A AAUA-AUUA- CUAAGUG--A UAAAGGAUGU -GAAUUUAUU UA---GACAA 2041 CUAGGAGGUU GGC(UUAGAA GCA)GCAAUU CCU|--U(UA A)A|AAGUGC (GUAAUA)GC 2101 |UUACUAGU- UAAAUGACUU UGC|GCCAAA AAUG-AAUGG GACU-----A AGUAA-UU|U 2161 |GCCGAAAAU |GUGG|ga-- --------(a uuauaa---- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ------)--- --------uc GGUAGGAGAG |CGUU-CUAU UUUGAAU-G- GAAGUAAUA- 2521 AC(GUAA)GU A-AUUAUAG| AUUAAAUAGA AGUGAGAAUG UCGGU|UUGA GUAACGAAAA 2581 CAUUGG(UGA AAA-U)CUAA UG|CUCCGAA AAUCUA-AGG GUUCCUU-AG CUAGG(UUCG 2641 U)CC|UCUGA GGGUUAAU|C AG|GUCCUAA AAUGAAGUC- --(-UAAA)- --GAUGUAAU 2701 UUGAUGG-UA AACAGG(UUA AUAUU)CCUG U|AU|ca-a- uuuuaauaau ---------- 2761 ---------- ---------- ------auaa aaa------- aaaguuacga aa--aaggcu 2821 aagucau-|c -ca-uaa(-- uuugguuuag uaauguaaaa auuuugauaa auuaauuuaa 2881 uuauguuuua uuaguauuga aaauaugagu uuggcgaagu auauacuaua augaaauuuu 2941 uauuuuuaua aauuuguaau uuuugauuug aaguauuaug aauauuaaua aauuauuuug 3001 ugauuuauuu uuguuuuugc auuauuuu)u u-augg-|uu ca-------- ---------a 3061 cugucugaga ug-------- ---------- ---------- ----uugaaa a-aua-uu(a 3121 u-aa---aa) aa-|u--auu ug-------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- -----aguu- 3301 uagguugg-a gua|cga-|- ---------- ---------- ---------- ---------u 3361 uaguau(--u au-g--)aua uuaa------ ---------- ---------- --------aa 3421 -gugaug-ua uguc-aug-| uuuccgagaa aagcuuu--u guuuuuaa-- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- aau-uuua-a auug|c|CUG UACCAUAAA- CU(GACACA) 3601 AG|---UGG- AU-UG-GUU- (-GAGUA)-U ACUAA-GG-A GC||UCGGGA UAAUUCUUUC 3661 UAAGGAA-CU CGGCAAAAUA ACUUUGUAAC (UUAG)GGAU AAAAAGU|AC CUUU------ 3721 ---------- (--aaa-)-- ---------- -----AGAGG U|C(UC-A)G AAAAAAGGUC 3781 CAAG|CGACU GC(UUAACAA AA)GCACAAG UCUCCG|CGA AGUU(GAAA) UACGAUGUAU 3841 GGGGGCUGAG GCC-UGCUCA GU|GCAGGAA GGUUAAAGAA AUUGGUUAGC --------(G 3901 -UUA)----- ---------- ---------- ---------- ---------G CAA-AGCUAG 3961 UAACUGAAGC C|CCUGUGAA C|AGC|GGCA AU(AACUAUA )AUUGUC|C( UAA)GGUAGC 4021 GAAAUUCCUU |GUCGGG(UA AGU)UCCGAC |CCGCACGAA AGGUUUAACG A-UUUGGACG 4081 CUGUCUCAGA AAGAAACUCG |GUGAAAUA| GAAUUGA-CU G(UG-AAGAU G)CGGUCUAC 4141 UUGCACUUGG ACAG-AAAGA CCCUAUGA|A GCUUUACUGU |AACUUGAUA UU|GAUU-UU 4201 GAGUUUUACU UGCGCAG-AA UAAGUGGGAG GC-UA-UGAU AUUAUUU(UU AG)GGAUAAU 4261 UUGAGCUGUA aUAUGAGAUA -CCACU|CU- AGAUGGACU- AAAAAUCUAA -UAU-uua-A 4321 UCUU(---au uuuga-auu) -AAGUUGAUA GACAAUUUCA AGUGGACAGU UUUACUG(GG 4381 G)CGGUA|GC C-UCC(UAAA AGGUAAC)GG AGGC|G|U|A CAAAGGUUUU U|UCAAUUUA 4441 U--(AUGGUA A--)--UUAA AUAUA---GA |GC(G|UAAA G)GU-AUAA- --AAAAG--C 4501 UUGACUGUAA GAC(AUAUAA )GUCGAACAG GGAU(UAAA) GUCGGU|CUU AAUGAUCCGG 4561 CGAUA-CUG( GAUGGA)AAG |GUCGUCGC- AAAC|AGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUGA UCUCCCCCAA GA(GUUCAUA )UCGACGGGG AGGUUUGGCA CCUCGAUGUC 4681 |GGCU|C|AU CGC|AACC|U GGAGCG(GUA GUU)UGUU-U C-AAGGGU|U GGGC(UGUUC 4741 )GCCCAUU-A AAGCGGUACG UGAGCUGGGU UCAGAAC|GU C(GAGA)GAC AGUUCGGUCC 4801 AUAUCC|GGU GUGAG|CGUU AGAGUAUU|G A|AAGGA-UU UUUUCU(UAG UAC(GAGA)G 4861 GA-CC)AGAA AAA|-ACAUA CCUAUGGUAU ACCAGU|UUU UGU(AC-CA) GCAGAAUAUG 4921 CUGGGUAGCU ACGUAUGGA- GUGG-AUAAC UGCU(GAAAG CAUAUA)AGU AGGAAGCCUA 4981 CCUU|AAGAU AAGUACUCU| UU|------( ------)--- ---aau--ag a|UU|AUGGU 5041 (AAAAUUA)A CCGU-UA--- ---------- ---------- -----GAUAG |GUAUU|AGG 5101 UAUAAAAAUA (GUGA)UAU- -|UUAGCUG| A|GAUAUACU AAUAAAUCGA ---AA|AUUU 5161 UGucUauau| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS chl.E.grac 5239 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: X12890 (J01414 K02392 K02484 X01734),X13310 LOCUS EGRCPRGG2 5279 bp ds-DNA PLN 15-MAR-1990 DEFINITION E.gracilis rrnC operon 16S, 23S and 5S rRNA, tRNA-Ile and tRNA-Ala genes. ACCESSION X12890 J01414 K02392 K02484 X01734 KEYWORDS 16S ribosomal RNA; 23S ribosomal RNA; 5S ribosomal RNA; pseudogene; ribosomal RNA; rrnC operon; transfer RNA-Ala; transfer RNA-Ile. SEGMENT 2 of 2 SOURCE E.glena gracilis (strain Pringsheim Z) chloroplast DNA, clones pG11, pEZC[1,937]. ORGANISM Chloroplast Euglena gracilis Eukaryota; Euglenophycota; Euglenophyceae; Euglenales. REFERENCE 1 (bases 1821 to 2265) AUTHORS Orozco,E.M.Jr., Rushlow,K.E., Dodd,J.R. and Hallick,R.B. TITLE Euglena gracilis chloroplast ribosomal RNA transcription units: II. Nucleotide sequence homology between the 16S-23S ribosomal RNA spacer and the 16S ribosomal RNA leader regions JOURNAL J. Biol. Chem. 255, 10997-11003 (1980) STANDARD full automatic REFERENCE 2 (bases 1822 to 2210) AUTHORS Graf,L., Koessel,H. and Stutz,E. TITLE Sequencing of 16S-23S spacer in a ribosomal RNA operon of Euglena gracilis chloroplast DNA reveals two tRNA genes JOURNAL Nature 286, 908-910 (1980) STANDARD full automatic REFERENCE 3 (bases 374 to 1884) AUTHORS Graf,L., Roux,E., Stutz,E. and Koessel,H. TITLE Nucleotide sequence of a Euglena gracilis chloroplast gene coding for the 16S rRNA: Homologies to E. coli and Zea mays chloroplast 16S rRNA JOURNAL Nucleic Acids Res. 10, 6369-6381 (1982) STANDARD full automatic REFERENCE 4 (bases 4971 to 5279) AUTHORS Karabin,G.D., Narita,J.O., Dodd,J.R. and Hallick,R.B. TITLE Euglena gracilis chloroplast ribosomal RNA transcription units: Nucleotide sequence polymorphism in 5 S rRNA genes and 5 S rRNAs JOURNAL J. Biol. Chem. 258, 14790-14796 (1983) STANDARD full automatic REFERENCE 5 (bases 1 to 393) AUTHORS Roux,E. and Stutz,E. TITLE The chloroplast genome of Euglena gracilis: The mosaic structure of a DNA segment linking the extra 16S rRNA gene with the rrn operon A JOURNAL Curr. Genet. 9, 221-227 (1985) STANDARD full automatic REFERENCE 6 (bases 1 to 5278) AUTHORS Hallick,R.B. JOURNAL Unpublished (1988) Univ. of Arizona, Bioscience West, Tucson 85721 STANDARD full automatic REFERENCE 7 (bases 2144 to 5279) AUTHORS Yepiz-Plascencia,G.M., Jenkins,M.E. and Hallick,R.B. TITLE Nucleotide sequence of the Euglena gracilis chloroplast 23s rRNA gene of the rrnC operon JOURNAL Nucleic Acids Res. 16, 14790-14796 (1988) STANDARD full automatic COMMENT Draft entr and computer-readable sequence for this entry kindly provided by R.B.Hallick, 07-SEP-1988. EMBL features not translated to GenBank features: key from to description SITE 162 235 tRNA-Ile pseudogene SITE 194 345 tRNA-Met-, tRNA-Trp- and tRNA-Glu pseudogene SITE 240 312 tRNA-Trp pseudogene. FEATURES Location/Qualifiers misc_feature 55..211 /note="16S rRNA pseudogene" rRNA 394..1884 /note="16S ribosomal RNA" tRNA 1972..2045 /note="tRNA-Ile (NAR: 0951)" tRNA 2055..2127 /note="tRNA-Ala (NAR: 0052)" rRNA 2144..5033 /note="23S ribosomal RNA" rRNA 5110..5225 /note="5S ribosomal RNA" BASE COUNT 1618 a 888 c 1327 g 1446 t ORIGIN 1 bp upstream of EcoRI site. BASE COUNT 920 a 480 c 741 g 752 t 2346 others ORIGIN 1 |--------- ---------- --GGUUCAAA UGAA---CAA GGGCUUAUGC GGGAUU|GCU 61 -UGG|CAUUU AG|AG|UCGA AGAAG-GG|C GUA(GAAA-- ----UU-)A| ACG-AUAUGC 121 UUUAGG|GAG CU(------- -----A-AA- GACG------ -----)AGCU UUA-AUCUAA 181 AGAUU|CCCG A--UGGG(GC AA)CCU|--- ----(auuac uuuaacau-) --------ua 241 caaugaaa(u g-guaua--- -)caa-auaa ---u-g-uAG A-gaAC|UUG GUGAACU|GA 301 (AACA)UCUU AGU-AGCCGA AGGAAAAGAA AGC(AAAA-- )GCG-AU|UU UCUUAUUAGU 361 -(GGCGA)GC UA-ACGGAAA -UCAGCCUAA Accu------ ---------- (uuau---)- 421 ---------- -----gggug uugu-gggua uauuau---- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- -------aau 781 uacugaaaaa ga-uagaGAA uuug-u(u-- gaaa)a-caa -aau|c(aaa )gaGGG(uuu 841 uaaAU)-CCC GUAuuuguuu uuaaaaagua auuuu----- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- --------ug auuuuccc-- -GAGUAGCAU AGAG(CACGU 1141 GGAA)UUCUG UGUGAAUCAG CGAG(GACCA U)CUCGUAAG GCUAA-AUAC UCCUAAAUGA 1201 CCGAUAGUGU ACGAGUACC( GUGA)GGGAA AGCUGAAAUA GAACACU(ga -ga-)AGUGA 1261 GUGAAAUAGA AUAUGAAAGC AU---AAGUU UACAAGCAGU AGGAGAUC-U ---------- 1321 ------(--a uuuaa-)--- ---------- ----AGA--U -UGACUGUGU GCCU(GUUGA 1381 AG|A)AUGA| GCCGGCGACU UAUAGGUGAU GGC------- -AAGGUU-AA GG--(----- 1441 uuuuu)--CC -GGAGCCAUA -Gc(uGAAA) uCG----AGC UU(AAA-UA) AAGCGaa--- 1501 aaacuuuc(- uucuu----- )gaaaguuu- -----auGUC AUUGCUUAUA GACCCGAACC 1561 CAGGUGAUCU AAUCAUGGU| CAGGUUGAAG UUUUGG(UAA A)ACAGAAUG GAGGACUGAA 1621 CCCACCAAU( GUUGAAAA)A UUGG|GGGAU GAACUGUGAU UAG-GGGA(G AAAU)UCCA- 1681 UCGA-ACUUG GAGCUAGCUG GAUCUCUUCG -AAAUGCGGU (UGGA)GGCG CAGC|GUUUA 1741 AUuau----- ---------- --------gg |-uaa-|-aC AUUAG|GGGU AA|-AGC-AC 1801 UGU-UUCGAU GC-GG|GCUA U(gaaa-)AU GGUACCA-AG UUGUG-GCAA ACUCUGAAUA 1861 |CUAAG-U-- ---------- ---------u auauuu---- -c|-aAUU-A AUCAGUGAGA 1921 CAGUGGGG(G AUAAG)CUUC AU--UGUCAA GAGGG(AAAC AG)CCCAGAU CACUACUUAA 1981 GGC|CCCU-A AAUA-AUUAc CUAAGUG--G UAAACCAUGU -ACUAUUACA UA---GACAA 2041 CCAGGAGGUU GGC(UUAGAA GCA)GCCAUU CCU|--U(UA A)A|AAGUGC (GUAAUA)GC 2101 |UUACUGGU- CAAGUGAUAG UGC|GCCGAA AAUG-AACGG GACU-----A AGUAA-UU|U 2161 |GCCGAAGGU |GUGA|ga-- --------(g aaa------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ------)--- --------uc GGUAGAAGAG |CGUU-CUGU GUUGAAG-A- GAAGGAAUA- 2521 GU(GAAA)AU A-GUUCUGG| AUUAAACAGA AGUGAGAAUG UCGGC|UUAA GUAACGAAAA 2581 CAUUGG(UGA AAA-U)CCUA UG|CUCCGAA AACCUA-AGG UUUCCUU-AG CCAGG(UUCG 2641 U)CC|UCUAA GGGUUAGU|C AG|GUCCUAA AAUAAGGUU- --(-UAAC)- --AACGUAAA 2701 UUGAUGG-AU GACAGG(UUA AUAUU)CCUG U|AC|cg-aa ugcuca-cu- ---------- 2761 ---------- ---------- --------ug uaa------- ggagugacga aa--aaggcu 2821 a-gaucg-|g -cc-acg(-- ug--augg-u -u-------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- --------)u g-uggu-|uu aa-------- ---------g 3061 gguucaagag g--------- ---------- ---------- -----uauca a-aua-uu(a 3121 a-aa---aa) aa-|u--auu uugu------ ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ------cuu- 3301 aaggccug-a aua|guau|- ---------- ---------- ---------- ---------- 3361 aaauac(--u ac-g--)gua uu-------- ---------- ---------- ------gaaa 3421 gugauu--ga uguc-aug-| uuuccaagaa aaacuuu--u guuuaugu-- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- aua-guga-g cucg|c|CUG UACCGUAAA- CU(GACACA) 3601 GG|---UAG- GU-UA-GUA- (-GAAUA)-U ACUAA-GG-A GC||GCGAGA UAACUCUUUC 3661 UAAGGAA-CU CGGCAAAAUG ACUUCGUAAC (UUCG)GAAG AAGAAGU|AC CUC------- 3721 ---------- (-uaau-)-- ---------- ------GAGG U|G(GC-A)G AAAAGAGGUC 3781 CAAG|CGACU GC(UUACCAA AA)GCACAGG UCUCCG|CGA AGUU(GAAA) AACGAUGUAU 3841 GGGGGCCGAG GCC-UGCUCA GU|GCAGGAA GGUUAAAGAA AUUGGUUAGC --------(G 3901 -UAA)----- ---------- ---------- ---------- ---------G CAA-AGCUAG 3961 UGACUGAAGC C|CCUGUGAA C|AGC|GGCA AU(AACUAUA )AUUGUC|C( UAA)GGUAGC 4021 GAAAUUCCUU |GUCGGG(UA AGU)UCCGAC |CCGCACGAA AGGCUUAACG A-UUUGGACA 4081 CUGUCUCAGA AAGAGACUCG |GUGAAAUA| GAAUUGA-CU G(UG-AAGAU G)CGGUCUAC 4141 UUGCACUUGG ACAG-AAAGA CCCUAUGA|A GCUUUACUGU |AUCCUGAAA UU|GGUU-UC 4201 GGGCUUUUUU UGCGCAG-AA UAGGUGAGAG GC-UA-UGAU CUUGUCU(UU UG)GGAUACG 4261 GGGAGCCGAA aAAUGAGAUA -CCACU|CU- GAGAAAGCU- AGAAAUCUAA -UCU-UA--A 4321 UCUU(---au guaca-auc) -AUGAUAAUU GACAGUUUCA GGUGGGCAGU UUUACUG(GG 4381 G)CGGUA|GC C-UCC(UAAA AAGUAAC)GG AGGC|G|U|A CAAAGGUUUU C|UCAGGCUA 4441 G--(ACGGAA A--)--UUAG UUGUG---GA |GU(G|UAAA G)GC-AUAA- --GAAAG--C 4501 UUGACUGUGA GAC(UUAUAA )GUCAAACAG AGAC(UAAA) GUCGGU|CUU AGUGACCCGA 4561 CGGUG-CUG( UAUGGA)AAG |GCCGUCG-U AAAC|AGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUGA UCUCCCCCAA GA(GUUCACA )UCGACGGGG AGGUUUGGCA CCUCGAUGUC 4681 |GGCU|C|AU CGC|AACC|U GGGGCG(GUA GUA)CGUC-C C-AAGGGU|U GGGC(UGUUC 4741 )GCCCAUU-A AAGCGGUACG UGAGCUGGGU UCAGAAC|GU C(GAGA)GAC AGUUCGGUCC 4801 AUAUCC|GGU GUGAG|CGUU AGAGUAUU|G A|AAGGC-GC UUUCCU(UAG UAC(GAGA)G 4861 GA-CC)GGGA AGG|-ACGCA CCACUGAUGU ACCAGU|UUU UGU(GC-CA) ACAGAAUACG 4921 CUGGGUAGUC AAGUGCGGA- GUGG-AUAAC UGCU(GAAAG CAUAUA)AGU AGGAAGCCCA 4981 CCUU|AAGAU AAGUACUCU| UC|------( ------)--- ----AU--aG G|UC|ACGGU 5041 (AAGACGA)A CCGU-UU--- ---------- ---------- -----GAUAG |GUAUU|AGG 5101 UGUACAAUUG (GUAA)CAAU U|UUAGCCG| A|GAUAUACU AACCGACCGA ---aa|AUUU 5161 UUUCC----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS (2)-Crown 5239 bp RNA RNA 21-JAN-1998 DEFINITION Eukaryote crown group. ACCESSION No information KEYWORDS No information. SOURCE Eukaryote crown group. ORGANISM Eukaryote crown group. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5239 others ORIGIN 1 |x~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 61 ~~~~|~~~~~ ~~|~~|~~~~ ~~~~~~~~|~ ~~~(~~~~~~ ~~~~~~~)~| ~~~~~~~~~~ 121 ~~~~~~|~~~ ~~(~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 181 ~~~~~|~~~~ ~~~~~~~(~~ ~~)~~~|~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~(~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~(~~~ )~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~------- 1321 ------~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 1381 ~~|~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 1801 ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~(~~ ~)~|~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~~-~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~-~~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~)~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~-~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~--~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~ // LOCUS (3)-Alveol 5239 bp RNA RNA 21-JAN-1998 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5239 others ORIGIN 1 |x~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 61 ~~~~|~~~~~ ~~|~~|~~~~ ~~~~~~~~|~ ~~~(~~~~~~ ~~~~~~~)~| ~~~~~~~~~~ 121 ~~~~~~|~~~ ~~(~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 181 ~~~~~|~~~~ ~~~~~~~(~~ ~~)~~~|~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~(~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~(~~~ )~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~------- 1321 ------~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 1381 ~~|~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 1801 ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~(~~ ~)~|~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~~-~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~-~~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~)~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~-~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~--~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~ // LOCUS pl.T.gon.1 5239 bp RNA RNA 11-JAN-191 DEFINITION Toxoplasma gondii,plastid. ACCESSION No information KEYWORDS No information. SOURCE Toxoplasma gondii,plastid. ORGANISM Toxoplasma gondii,plastid. REFERENCE 1 AUTHORS David Roos JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: U18086 BASE COUNT 1037 a 337 c 496 g 819 t 2550 others ORIGIN 1 |--------- -------UAA AAUAAAAAUU UUAAA--UUA UAGGAAAAAA AGGAUG|UCU 61 -AGG|UACUU UA|AG|ACGA UGAAG-GA|C GUA(aaaaau auauaua)U| ACG-AAAAAC 121 UUAUUU|A-U AG(------- -----CUUA- UAUA------ -----)CUU- ----UAAGUA 181 AGAUC|UCCG AA-UAGG(GA -A)CCU|--- ----(----- ---------) ------UUUA 241 AUAUUUUU(- --UAAAUU-- -)AAA-AAU- --GA-U-U-- ---UAC|UUG AGGAACU|GA 301 (AUCA)UCUU AGU-ACUCAA AGGAAAAGAA AAU(AACA-- )AUU-AU|UC CCUUAGUAGU 361 -(GGCGA)AC GA-GUAGGGA -UAAGAAAC- ---------- ---------- (-------)- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ------(--- ----)----- ----|-(--- )-----(--- 841 -----)---- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 -----guuag acguuuaguu uaaauaaaaa uaaaa----U AAAGUAAAUA UAAA(CAACU 1141 GG--)UUUAU AUUGAAGAAA CAAG(AACUU C)CUUGUAAA ACUAA-AUAC UUUAAAGUAA 1201 CCGAUAGUGU ACUAGUACC( GUGA)GGGAA AGAUGAAAA- GAACCCC(GG GU--)GGGGA 1261 GUGAAAAGAG A-CUGAAAUU UU--AAUCCU AACA-ACAAU AGAAGGGU-- ---------- 1321 ------(--a uauga-)--- ---------- -----AC--C -UAACUAUUU GCCU(GUUGA 1381 AG|A)AGGA| ACCGAUAAGU UUUGGUUuuu aagc-----A AAAGGCU-AA AA--(----U 1441 UAAAC)--UU -GAAGCCAUA -GU(-GAAA) ACGaguuAUU AC(AAU-UA) GUaaua---- 1501 ---------- ---------- ---------- gc-guuugua uauAACCAAA AGCGCGAAUC 1561 CAAUUGAUAU AACCUUGUU| CAGAAUGAAA UAUAAA(UAA C)UUUAUAUA GAGGUUCGAA 1621 CUGAUUAAU( GCUGCAAA)A UUAU|CAGAA GAAAUGAGGU UAG-UUGU(G AAAU)GCUUG 1681 UCGA-AUUUG GAGCUAGCUG GUUCUCCCCG -AAAUGUAU- (UGAG)-GCG CAGC|u-auu 1741 auaau----- ---------- ---------a |uaua-|-ua -aaaa|gggu aa|-agc-ac 1801 ugu-uuuua- -----|---- -(aaa--)-- ---------- ucacu-auaa acuaauaaua 1861 |uuuuu-a-- ---------- ---------- ---uauuaac au|-uaua-a u-aAGUGAGA 1921 CUUUUAGG(G AUAAU)CUUA UA--AGUCAA AAGGG(AAAC AA)CCCAGAC CAUAAACUAA 1981 GAU|AAAA-A UAUA-ACGA- AAAUUUU--- -AAAGGAUGU -GGAGUUGUU ACGUAUACAA 2041 CCAGAAGGUU AGC(UU-GAA GCA)GUUUU- CCU|--U(UA A)A|AAGUGC (GUUAAA)GC 2101 |UUACUGGU- AAAGUAAUUC UGC|ACC-UA AAAUGAACAA UAAA----AU AUUUU-UU|U 2161 |AUCGAAGUA |AUGG|gauc uauu----(a auuaaa---- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ------)--- --aauagauc GGUAGGGGAG |CGUU-CUAC A-UUAAAAU- AAAGCAAAG- 2521 UU(AUUA)AA U-UUUGUGA| AUAAAGUAGA AGUGAGAAUG UCGGU|UUAA GUAACUUAAA 2581 UAUUAA(GAA GAA-U)CUAA UA|CCUCAAA AACUCAAAAG GUUCCUA-UG AAAGG(AUAA 2641 A)CC|GCAUA GGGUUAGU|C GG|GGCCUAA GAUAAGAAA- --(-UUU-)- --AUUGUAAU 2701 UG-AUGG-GA AUCAAG(UUA AUAUU)CUUG A|AC|ca-u- -auuua-uau a--------- 2761 ---------- ---------- ---------- guau--acaa guagugaccu aa-------- 2821 --------|- -------(-- ---------- ----auauaa auucuaagua a(uauaauaa 2881 augauuu)uu acuuagaaau aaaauu---- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- --------)- -------|-- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- --------(- 3121 ---------) ---|------ ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---|----|- ---------- ---------- ---------- ---------- 3361 ------(--- ------)--- ---------- ---------- ---------- ---------- 3421 ---------- ---------| uuugcuagaa aaaugau--a uuguauaa-- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- -uu-auag-a uaug|C|CCG UACU-AAAA- CU(GACACA) 3601 AG|---UGA- GU-AG-GUAC (UAUAAC)GU ACUAA-GA-G GA||-CGAAA UAAAUUUCUU 3661 UAAGGAA-CU CGGCAAAACA AUCCUGUAAC (UUCG)GGAU AAAGGAU|GC CU-------- 3721 ---------- (-aua--)-- ---------- -------AGG C|U(GC-A)A UUAAAAGGUU 3781 CAAG|CGACU GU(UUAUCAA AA)ACACAGG UAUCCG|CAA AAUG(UAAU) UAUGAAGUAA 3841 GGAUACUGAC ACC-UGCCCA GU|GCUAGUA AGUUAAAAAA AAUUUUUAUG U-------(- 3901 -UAU)----- ---------- ---------- ---------- --------AC AAA-UAAUUU 3961 UUUUAUAAGC U|CUAGUAAA C|GGC|GGCU GU(AACUAUA )ACGGUC|C( UAA)GGUAGC 4021 GAAAUUCAUU |GUCGGG(UA AGU)UCCGAC |CCGCACGAA AGGUGUAACG A-CUUGAACA 4081 CUGUCUUUAA GAAAUAUUCG |GUGAAAUA| GAAAUGU-UU G(UA-AAGAU A)CAGACUUU 4141 UUACAUCAGG ACAG-AAAGA CCCUAUGA|A GCUUUACUGC |AAUUUGAAA UU|GAAA-UU 4201 AAAUUUUAUU UAUAUAG-UG UAAGUGGGAA GU-------- -------(UU AU)------- 4261 ----ACUAUU -AAUGAAACU -CCACU|UU- AAUAAAUUU- UAAUUUCUAA -CUA-UA--- 4321 AUUU(----- --UUUUAUC) -AUAUUAUAU AAAAAUUUCA AAAAGGUAGU UUGACUG(GG 4381 G)CGGUU|GC C-UCC(UAAA GAGUAAC)GG AGGU|G|C|A C-AAAGGUCU U|UUAuuuua 4441 aua(aaaaua aaa)uauuaa aauuaau-aa |AU(G|UAAA G)GU-AAAUA AUAAGAAGGC 4501 UUGAUUGUGA GAG(UAACUA )CUUAAACAA GGAC(GAAA) GUCGGU|CUU AGUGAUCCGA 4561 CAACU-CUA( AGUGGU)AGG |AUUGUCGCU UAAC|GGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUGA UCUCUCCCGA UA(GUCCAUA )UUGACGGGG AGGUUUGGCA CCUCGAUGUC 4681 |GGCU|C|GU CGC|AUCC|U GAGGCU(GUA GCA)GGUC-U C-AAGGGU|U GGUC(UGUUC 4741 )GCCCAUU-A AAGCGGCACG UGAGCUGGGU UCAGAAC|GU C(GUGA)GAC AGUUCGGUCC 4801 GUAUCC|GAU GUAAA|CGUA AGAAUAUU|G U|AAAGU-AU UUCCUU(UAG UAC(GAGA)G 4861 GA-CC)AAGG AGA|-UUAAA CCUAUAGUAG UUCAGU|UAU UUU(AUCAU) AAGUAUUUUA 4921 CUGAGUAGCU AAGUUUAAU- AAAA-AUAAC UACU(GAAAG CAUAUA)AGU AGGAAAAAA- 4981 CUUU|AAGAU UAAUAUUCU| GU|UCA---( UAAGAU)--- UGA-GU-AAG A|AU|UUAAA 5041 (AAGAACA)U UUAU-UA--- ---------- ---------- -----AAAAG |AAAAA|UUG 5101 UAUAAAAAUA (GUAA)UGUU U|UUAGCAA| A|UUUUUGCU UUUUUUUCGA -AGAU|AAAU 5161 UUUUUC---| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS pl.T.gon.2 5239 bp RNA RNA 31-JUL-1998 DEFINITION Toxoplasma gondii.; 16S ribosomal RNA; 16S rRNA; 23S ribosomal RNA; 23S rRNA; ORF470; plastid DNA; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Leu; transfer RNA-Met; transfer RNA-Thr; transfer RNA-Val; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Leu; tRNA-Met; tRNA-Thr; tRNA-Val. ACCESSION Y11430 KEYWORDS 16S ribosomal RNA; 16S rRNA; 23S ribosomal RNA; 23S rRNA; ORF470; plastid DNA; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Leu; transfer RNA-Met; transfer RNA-Thr; transfer RNA-Val; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Leu; tRNA-Met; tRNA-Thr; tRNA-Val. SOURCE Toxoplasma gondii. ORGANISM Toxoplasma gondii. REFERENCE 1 (bases 1 to 6113) AUTHORS Denny,P., Preiser,P., Williamson,D. and Wilson,I. TITLE Evidence for a single origin of the 35 kb plastid DNA in apicomplexans JOURNAL Protist 149, 51-59 (1998) STANDARD No information REFERENCE 2 (bases 1 to 6113) AUTHORS Denny,P.W. TITLE Direct Submission JOURNAL Submitted (24-FEB-1997) P.W. Denny, National Institute for Medical Research, Mill Hill, London, NW7 1AA, UK STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: Y11430 BASE COUNT 1048 a 337 c 490 g 816 t 2548 others ORIGIN 1 |--------- -------UAA AAUAAAAAUU UUAAA--UUA UAGGAAAAAA AGGAUG|UCU 61 -AGG|UACUU UA|AG|ACGA UGAAG-GA|C GUA(aaaaau auauaua)U| ACG-AAAAAC 121 UUAUUU|A-U AG(------- -----CUUA- UAUA------ -----)CUU- ----UAAAUA 181 AGAUC|UCCG AA-UAGG(GA AA)CCU|--- ----(----- ---------) ------UUUA 241 AUAUUUUU(- --UAAAUU-- -)AAA-AAU- --GA-U-U-- ---UAC|UUG AGGAACU|GA 301 (AUCA)UCUU AGU-ACUCAA AGGAAAAGAA AAU(AACA-- )AUU-AU|UC CCUUAGUAGU 361 -(GGCGA)AC GA-GUAGGGA -UAAGAAAC- ---------- ---------- (-------)- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ------(--- ----)----- ----|-(--- )-----(--- 841 -----)---- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 -----guuag acguuuaguu uaaauaaaaa uaaaa----U AAAGUAAAUA UAAA(CAACU 1141 GG--)UUUAU AUUGAAGAAA CAAG(AACUU C)CUUGUAAA ACUAA-AUAC UUUAAAGUAA 1201 CCGAUAGUGU ACUAGUACC( GUGA)GGGAA AGAUGAAAA- GAACCCC(GG GA--)GGGGA 1261 GUGAAAAGAG A-CUGAAAUU UU--AAUCCU AACA-ACAAU AGAAGGGU-- ---------- 1321 ------(--a uauga-)--- ---------- -----AC--C -UAACUAUUU GCCU(GUUGA 1381 AG|A)AGGA| ACCGAUAAGU UUUGGUUuuu aagc-----A AAAGGCU-AA AA--(----U 1441 UAAAC)--UU -GAAGCCAUA -GU(-GAAA) ACGaguuAUU AC(AAU-UA) GUaaua---- 1501 ---------- ---------- ---------- gc-guuugua uauAACCAAA AACCCGAAUC 1561 CAAUUGAUAU AACCUUGUU| CAGAAUGAAA UAUAAA(UAA C)UUUAUAUA GAAGUUCGAA 1621 CUGAUUAAU( GCUGCAAA)A UUAU|CAGAA GAAAUGAGGU UAG-UUGU(G AAAU)GCUUG 1681 UCGA-AUUUG GAGCUAGCUG GUUCUCCCCG -AAAUGUAU- (UGAG)-GCG CAGC|u-auu 1741 auaau----- ---------- ---------a |uaua-|-ua -aaaa|gggu aa|-agc-ac 1801 ugu-uuuua- -----|---- -(aaa--)-- ---------- ucacu-auaa acuaauaaua 1861 |uuuuu-a-- ---------- ---------- ---uauuaac au|-uaua-a u-aAGUGAGA 1921 CUUUUAGG(G AUAAU)CUUA UA--AGUCAA AAGGG(AAAC AA)CCCAGAC CAUAAACUAA 1981 GAU|AAAA-A UAUA-ACGA- AAAUUUU--- -AAAGGAUGU -GGAGUUGUU ACGUAUACAA 2041 CCAGAAGGUU AGC(UUAGAA GCA)GUUUU- CCU|--U(UA A)A|AAGUGC (GUAAAA)GC 2101 |UUACUGGU- AAAGUAAUUC UGC|ACC-UA AAAUGAACAA UAAA----AU AUUUU-UU|U 2161 |AUCGAAGUA |AUGG|gauc uauu----(a auuaaa---- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ------)--- --aauagauc GGUAGGGGAG |CGUU-CUAC A-UUAAAAU- AAAGCAAAG- 2521 UU(AUUA)AA U-UUUGUGA| AUAAAGUAGA AGUGAGAAUG UCGGU|UUAA GUAACUUAAA 2581 UAUUAA(GAA GAA-U)CUAA UA|CCUCAAA AACUCAAAAG GUUCCUA-UG AAAGG(AUAA 2641 A)CC|GCAUA GGGUUAGU|C GG|GGCCUAA GAUAAGAAA- --(-UUU-)- --AUUGUAAU 2701 UG-AUGG-GA AUCAAG(UUA AUAUU)CUUG A|AC|ca-u- -auuua-uau a--------- 2761 ---------- ---------- ---------- guau--acaa guagugaccu aa-------- 2821 --------|- -------(-- ---------- ----auauaa auucuaagua a(uauaauaa 2881 augauuu)uu acuuagaaau aaaauu---- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- --------)- -------|-- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- --------(- 3121 ---------) ---|------ ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---|----|- ---------- ---------- ---------- ---------- 3361 ------(--- ------)--- ---------- ---------- ---------- ---------- 3421 ---------- ---------| uuugcuagaa aaaugau--a uuguauaa-- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- -uu-auag-a uaug|C|CCG UACU-AAAA- CU(GACACA) 3601 AG|---UGA- GU-AG-GUAC (UAUAAC)GU ACUAA-GA-G GA||-CGAAA UAAAUUUCUU 3661 UAAGGAA-CU CGGCAAAACA AUCCUGUAAC (UUCG)GGAU AAAGGAU|GC CU-------- 3721 ---------- (-aua--)-- ---------- -------AGG C|U(GC-A)A UUAAAAAGUU 3781 CAAG|CGACU GU(UUAUCAA AA)ACACAGG UAUCCG|CAA AAUG(UAAU) UAUGAAGUAA 3841 GGAUACUGAC ACC-UGCCCA GU|GCUAGUA AGUUAAAAAA AAUUUUUAUG U-------(- 3901 -UAU)----- ---------- ---------- ---------- --------AC AAA-UAAUUU 3961 UUUUAUAAGC U|CUAGUAAA C|GGC|GGCU GU(AACUAUA )ACGGUC|C( UAA)GGUAGC 4021 GAAAUUCAUU |GUCGGG(UA AGU)UCCGAC |CCGCACGAA AGGUGUAACG A-CUUGAACA 4081 CUGUCUUUAA GAAAUAUUCG |GUGAAAUA| GAAAUGU-UU G(UA-AAGAU A)CAGACUUU 4141 UUACAUCAGG ACAG-AAAGA CCCUAUGA|A GCUUUACUGC |AAUUUGAAA UU|GAAA-UU 4201 AAAUUUUAUU UAUAUAG-UG UAAGUGGGAA GU-------- -------(UU AU)------- 4261 ----ACUAUU -AAUGAAACA -CCACU|UU- AAUAAAUUU- UAAUUUCUAA -CUA-UA--- 4321 AUUU(----- --UUUUAUC) -AUAUUAUAU AAAAAUUUCA AAAAGGUAGU UUGACU-(GG 4381 G)CGGUU|GC C-UCC(UAAA GAGUAAC)GG AGGU|G|C|A C-AAAGGUCU U|UUAuuuua 4441 aua(aaaaua aaa)uauuaa aauuaau-aa |AU(G|UAAA G)GUuAAAUA AUAAGAAGGC 4501 UUGAUUGUGA GAG(UAACUA )CUUAAACAA GGAC(GAAA) GUCGGU|CUU AGUGAUCCGA 4561 CAACU-CUA( AGUGGU)AGG |AUUGUCGCU UAAC|GGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUGA UCUCUCCCGA UA(GUCCAUA )UUGACGGGG AGGUUUGGCA CCUCGAUGUC 4681 |GGCU|C|GU CGC|AUCC|U GAGGCU(GUA GCA)GGUC-U C-AAGGGU|U GGUC(UGUUC 4741 )GCCCAUU-A AAGCGGCACG UGAGCUGGGU UCAGAAC|GU C(GUGA)GAC AGUUCGGUCC 4801 GUAUCC|GAU GUAAA|CGUA AGAAUAUU|G U|AAAGU-AU UUCCUU(UAG UAC(GAGA)G 4861 GA-CC)AAGG AGA|-UUAAA CCUAUAGUAG UUCAGU|UAU UUU(AUCAU) AAGUAUUUUA 4921 CUGAGUAGCU AAGUUUAAU- AAAA-AUAAC UACU(GAAAG CAUAUA)AGU AGGAAAAAA- 4981 CUUU|AAGAU UAAUAUUCU| GU|UCA---( UAAGAU)--- UGA-GU-AAG A|AU|UUAAA 5041 (AAGAACA)U UUAU-UA--- ---------- ---------- -----AAAAG |AAAAA|UUG 5101 UAUAAAAAUA (GUAA)UGUU U|UUAGCAA| A|UUUUUGCU UUUAAUUCGA -AGAU|AAAU 5161 UUUUUU---| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS pl.P.falci 5239 bp RNA RNA 11-JAN-191 DEFINITION plastid-like Plasmodium falciparum. ACCESSION No information KEYWORDS No information. SOURCE plastid-like Plasmodium falciparum. ORGANISM plastid-like Plasmodium falciparum. REFERENCE 1 (bases 1 to 6113) AUTHORS Wilson,R.J., Gardner,M.J., Feagin,J.E., Moore,D., Rangachari,K. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: X95275,X61660 LOCUS PFAMTPFLSR 2700 bp ds-DNA ORG 01-OCT-1991 DEFINITION Plasmodium falciparum mitochondrion gene for a large subunit ribosomal RNA from the inverted repeat within the 35-Kb circular DNA ACCESSION X61660 KEYWORDS inverted repeat; ribosomal RNA; ribosomal RNA large subunit. SOURCE Mitochondrion Plasmodium falciparum DNA. ORGANISM Mitochondrion Plasmodium falciparum Eukaryota; Animalia; Protozoa; Microspora; Microsporea; Microsporida; Haemosporina; Plasmodiidae. REFERENCE 1 (bases 1 to 2700) AUTHORS Wilson,R.J., Gardner,M.J., Feagin,J.E., Moore,D., Rangachari,K. and Williamson,D.H. TITLE A large subunit ribosomal RNA gene from the inverted repeat within the 35-Kb circular DNA of the malaria parasite Plasmodium falciparum JOURNAL Unpublished (1991) STANDARD full automatic COMMENT *source: strain=C10; *source: stage=Erythrocytic; *source: clone= pf4, pf5, pf6a; From EMBL entry MIPFLSRRN; dated 11-SEP-1991. FEATURES Location/Qualifiers rRNA 1..2700 /note="subcellularlocalisation unknown" /product="large subunit rRNA" BASE COUNT 1175 a 199 c 324 g 1002 t ORIGIN BASE COUNT 1175 a 199 c 324 g 1002 t 2539 others ORIGIN 1 |--------- -------AAU AUAUAAUUAA AUAUAUAUAA UAAAUUUAAA AGGAUG|UCU 61 AUAA|UUUUU AU|UA|AAUA AGAAA-GA|C GUU(AUAU-- -AUAUU-)A| ACG-AAAU-U 121 UUUAUA|AUA AU(UAAUAAA AAUAU(-AUU U-)AUAUUUA UUAAU)AAAU AUUAUUAUAA 181 AAGUA|UCUG AU-AAAA(UA UU)UUU|--- ----(----- -----auau) ---------a 241 aa-ua---(- ---uuu---- -)-----ua- ---u-u-uaa --aaAC|UUA AGGAAUU|GA 301 (AUCA)UCUU AGU-ACUUAA AGGAAUAAAA AGU(AAUA-- )ACG-AU|UU UCAUAGUAGC 361 -(GGCGA)GC GA-AUUGAAA -AAAAAUAA- ---------- ---------- (-------)- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- acauuua-AA aaaa-u(aug uaaa)a-uuu -uaa|u(aaa )g--ua(-au 841 auaa-)-ua- -uauaau--- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- ---------- ------uuua uau-(--aaa 1141 ua--)-auau aaaaaaua-a uaag(aauua c)cuuauAAA AUUAA-AUAU A-AUAAAAG- 1201 UUUAUAGAGA AA-AGUACC( GUGA)GG-AA AGAUGAAAA- GAAUUUU(GA AA--)AAAUA 1261 GUGAAA-AGA AUCUGAA-UU UU--AAUUUA AAUAAAUUAU AAUAAAAU-U U--------- 1321 ------(--a auuu--)--- ---------- ---UAAU--U -UUAUUAUAU UCUU(GUUGA 1381 AG|A)AAGA| AUUAGCAAGU UAUAAUAAAU AGUAUAAUAA UUAGGUU-AA AU--(AUAUU 1441 UAAAU)-AAU -GAA------ -gc(-caaa) gu----uaaa uc-gaa-uu- uauuuu---- 1501 ---uuuaa(- uaaau----- )uuaaaa--- ---u-auAUU AUUUAUUAUA GACCCGAAAU 1561 CAAAUGAUCU AAUUAUAUU| UAAAAUAAAA UUUAAA(UAA A)AUUAAAUU AUAGUUUGAA 1621 UUGAUUACU( GUUGCAAA)A GUAU|CAAAU AAAAUAUAAU UAG-UGGU(G AAAU)GCCAA 1681 UCGA-AUUUG AAGAUAGCUG GUUCUCUUUG -AAAUAUAU- (GUAA)-GUA UAGU|A-UUU 1741 AUAUA----- ---------- ---------U |-AAA-|-UA -AAUG|UA-- AA|-A-CU-C 1801 UUUUUUUAUU AG-AU|UAAU U(UAAAU)AA UUA-AUAUUA AUAUUAAUAA UUUAAUAAUU 1861 |UUAUU-U-- ---------- ---------- --AAUAA-AA UA|-UAUA-U A-UUAUUAGA 1921 AAAUAAAG(G AUAAG)CUUU AU--UUUCAA AAGGG(AAAC AG)CCCUAAU UAUAAAUUAA 1981 GAU|UUUU-A AAUA-UUAA- UUAAGUUUUA AAAAGAAUAU -AAAAUUAUA UU---AAUAA 2041 UUAAAAAGUA AAU(UUAGAA GCA)GUUAU- CUU|--U(UA A)A|GAGUGC (GUAAAA)GC 2101 |UCAUUAAU- UUAAUAAUUU UAG|UUCAAA AAUAAU-CGA AAAU-----A AAUUA-AU|U 2161 |AUCGAUAUU |AUAA|aauu uaau----(a uuaguaca-- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ------)--- --auuaaauu GGUAAAAGAG |CGUU-UUGA U-AAAAU-A- UUAUUUA-U- 2521 AU(GUAA)AU U-AAAAUAA| UAAAAUCAAA AGUGAUAAUG CUAAU|UUGA GUAAUGUAAA 2581 UAUUGG(UAA AAA-U)CCAA UA|CUUCUAU AAUUUA-AGG UUUCCUA-UU UAUAA(UUUU 2641 U)UU|UAAUA GGGUUAGU|C GA|AUCUUAA AAUGAGAUG- --(-AAA-)- --CGUGUAAU 2701 UG-AUAG-AU AAUAAG(UUA AUAUU)CUUA U|AC|ua-u- -auuau-aau ---------- 2761 ---------- ---------- ---------u uauau----- uuuaagacua au--auuaau 2821 a-au----|- -------(-- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- --------)- -------|-- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- --------(- 3121 ---------) ---|------ ---------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---|----|- ---------- ---------- ---------- ---------- 3361 ------(--- ------)--- ---------- ---------- ---------- ------uuua 3421 a---ua--uu auuu-au--| auuauauaaa aauuauu-aa uauauuu--- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- -au-uaua-a uaua|u|UCG UACCGUAAA- CU(GACACU) 3601 AG|---UAA- AU-AU-AUA- (-UAUAU)-U AUUAA-GA-A GU||-UAAGA UAAUUUUUUU 3661 UAAGGAA-CU CGGCAAUUUA AUCUUGUAAC (UUAG)GGAU AAAAGAU|ac u--------- 3721 ---------- (--uuuu)-- ---------- --------ag u|U(GA-A)A AUAAAAAAUU 3781 UAAG|CGACU GU(UUAACAA AA)ACACAAA UCUUUG|CUA AAUU(GAAA) AAUGAUGUAU 3841 AAAGAUUGAC AUC-UGCCCA GU|GCUAUUA UGUUAAAAUA AUAUAUGUAA U-------(- 3901 -UAA)----- ---------- ---------- ---------- --------AU UAU-AAU-AU 3961 AUAUAUAAGC U|AUAGUAAA C|GGC|GGCU GU(AUCUAUA )ACGGUC|C( AAA)GGUAGC 4021 GAAAUUCCUU |GUCGGG(UA AGU)UCCGAC |CUGCAUGAA AGAUGUAACG A-CUUAAAUG 4081 CUGUCUUAAA AAAAAUCUUA |AUGAAAUA| AAAUUAU-CU G(UG-AAGAU A)CAGAUUUC 4141 UUAUAUUAGG ACAG-AAAGA CCCUAUGA|A GCUUUACUAU |UAAUAAAUA AU|GAAA-AU 4201 AUAUAUAUUU AACAUAG-UA UAAAUGGGAA ACAAU-AAUA UUAUUUU(CU UG)GAAAUAA 4261 UUUAGUUAAA -AAUGAAAUA -CCAUU|UU- AUUUAUAUA- UAAAUUCUUA -UAG-AA--- 4321 AUUU(----- --UAU-AAC) -AAAUUUUUA AACAAUAUUU AUGAGAUAGU UUGACUG(GG 4381 G)CGGUC|UC C-UCC(UAUA UAUAAAC)GG AGGA|G|U|A CAAUGUUAUA U|-------- 4441 ---(--UUAU U--)------ ---------- |AU(A|UAAA G)AU---AUA AUAUAUA--A 4501 UUAACUGUAA AAU(UUACAA )AUUAAACAG AGAU(AAAU) GUCGGU|CUU AAUGAUCCGA 4561 UAAUUAUUU( AGUAAU)AAA |AUUAUCGCU UAAC|GGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUAA UCUUUUCCGA GA(GUCCAUA )UUGACGAAA AGGUUUGGCA CCUCGAUGUC 4681 |GGCU|U|AU CGC|AUCC|U AAAGCA(GUA GUA)UGUU-U U-AAGGGU|A AGUC(UGUUC 4741 )GCCUAUU-A AAGCGAUACG UGAGCUGGGU UCAGAAC|GU C(GUGA)GAC AGUUCGGUCC 4801 AUAUCU|AAU AUAAG|UGUU AGAAUAUU|G A|AAUUA--U UUUUUU(UAG UAC(GAGA)G 4861 GA-UC)AAAA AAA|-UUAUA CCAAUGAUAU AUCAAU|UAU AAA(AUUUU) UUUGUA-AAG 4921 UUGAGUAGUU AAGUAUAAA- A-UU-UUAAU UGUU(GAAGU AAUAUA)AAU AAGAAAAUUU 4981 AGUU|AAAAA UAAUAUUCU| AA|UCAU--( -AUAA-)--A UGA-AU-AAA A|CA|AUAAU 5041 (UAGAAAA)A UUAU-UU--- ---------- ---------- -----UAUAG |GAUUA|GUA 5101 UGUAUUUAUA (GUAA)UAUA U|UUAGUGU| A|UAAUUCCU AAUAAGUUGA --AUA|UUUA 5161 AUUA-----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS (3)-Crypto 5239 bp RNA RNA 21-JAN-1998 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5239 others ORIGIN 1 |x~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 61 ~~~~|~~~~~ ~~|~~|~~~~ ~~~~~~~~|~ ~~~(~~~~~~ ~~~~~~~)~| ~~~~~~~~~~ 121 ~~~~~~|~~~ ~~(~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 181 ~~~~~|~~~~ ~~~~~~~(~~ ~~)~~~|~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~(~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~(~~~ )~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~------- 1321 ------~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 1381 ~~|~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 1801 ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~(~~ ~)~|~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~~-~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~-~~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~)~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~-~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~--~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~ // LOCUS pl.G.the.1 5239 bp RNA RNA 15-SEP-1998 DEFINITION Chloroplast Guillardia theta.; . ACCESSION AF0414 8 X141 1 X623 9 X515 1 X145 4 X521 8 X529 2 X568 6 M765 KEYWORDS . SOURCE Chloroplast Guillardia theta. ORGANISM Chloroplast Guillardia theta. REFERENCE 1 (bases 47701 to 48415) AUTHORS Douglas,S.E. and Durnford,D.G. TITLE plastid-encoded in the chlorophyll c-containing alga Cryptomonas phi The small subunit of ribulose-1,5-bisphosphate carboxylase is JOURNAL Plant Mol. Biol. 13 (1), 13-20 (1989) STANDARD No information REFERENCE 2 (bases 45872 to 47981) AUTHORS Douglas,S.E., Durnford,D.G. and Morden,C.W. TITLE Nucleotide sequence of the gene for the large subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase from the chlorophyll c-containing Alga Cryptomonas F: evidence supporting the polyphyletic origin of plastids JOURNAL J. Phycol. 26, 500-508 (1990) STANDARD No information REFERENCE 3 (bases 43739 to 44938) AUTHORS Douglas,S.E. and Durnford,D.G. TITLE Nucleotide sequence of the genes for ribosomal protein S4 and tRNA(Arg) from the chlorophyll c-containing alga Cryptomonas phi JOURNAL Nucleic Acids Res. 18 (7), 1903 (1990) STANDARD No information REFERENCE 4 (bases 18535 to 19351) AUTHORS Douglas,S.E. and Durnford,D.G. TITLE Sequence analysis of the plastid rDNA spacer region of the chlorophyll c-containing alga Cryptomonas phi JOURNAL DNA Seq. 1 (1), 55-62 (1990) STANDARD No information REFERENCE 5 (bases 34539 to 35380) AUTHORS Reith,M. and Douglas,S. TITLE Localization of beta-phycoerythrin to the thylakoid lumen of Cryptomonas phi does not involve a signal peptide JOURNAL Plant Mol. Biol. 15 (4), 585-592 (1990) STANDARD No information REFERENCE 6 (bases 110917 to 113854) AUTHORS Douglas,S.E. TITLE Unusual organization of a ribosomal protein operon in the plastid genome of Cryptomonas phi: evolutionary considerations JOURNAL Curr. Genet. 19 (4), 289-294 (1991) STANDARD No information REFERENCE 7 (bases 40675 to 42376) AUTHORS Douglas,S.E. and Turner,S. TITLE Molecular evidence for the origin of plastids from a cyanobacterium-like ancestor JOURNAL J. Mol. Evol. 33 (3), 267-273 (1991) STANDARD No information REFERENCE 8 (bases 96129 to 98906) AUTHORS Wang,S.L. and Liu,X.Q. TITLE The plastid genome of Cryptomonas phi encodes an hsp70-like protein, a histone-like protein, and an acyl carrier protein JOURNAL Proc. Natl. Acad. Sci. U.S.A. 88 (23), 10783-10787 (1991) STANDARD No information REFERENCE 9 (bases 106789 to 108216) AUTHORS Douglas,S.E. TITLE A secY homologue is found in the plastid genome of Cryptomonas phi JOURNAL FEBS Lett. 298 (1), 93-96 (1992) STANDARD No information REFERENCE 10 (bases 42198 to 44153) AUTHORS Douglas,S.E. and Reith,M.E. TITLE A bchI homolog, encoding a subunit of Mg chelatase, is located on the plastid genomes of red and cryptomonad algae JOURNAL J. Mar. Biotechnol. 1, 135-141 (1993) STANDARD No information REFERENCE 11 (bases 82327 to 84479) AUTHORS Douglas,S.E. and Murphy,C.A. TITLE Structural, transcriptional and phylogenetic analyses of the atpB gene cluster from the plastid of Cryptomonas F (Cryptophyceae) JOURNAL J. Phycol. 30, 329-340 (1994) STANDARD No information REFERENCE 12 (bases 98901 to 114602) AUTHORS Wang,S.L., Liu,X.Q. and Douglas,S.E. TITLE The large ribosomal protein gene cluster of a cryptomonad plastid: gene organization, sequence and evolutionary implications JOURNAL Biochem. Mol. Biol. Int. 41 (5), 1035-1044 (1997) STANDARD No information REFERENCE 13 (bases 61067 to 68605) AUTHORS Leitsch,C.E.W., Kowallik,K.V. and Douglas,S.E. TITLE The atpA gene cluster of a cryptomonad, Guillardia theta: A piece in the puzzle of chloroplast genome development JOURNAL J. Phycol. (1998) In press STANDARD No information REFERENCE 14 (bases 1 to 121524) AUTHORS Douglas,S.E. and Penny,S.L. TITLE The plastid genome from the cryptomonad alga, Guillardia theta: complete sequence and conserved synteny groups confirm its common ancestry with red algae JOURNAL J. Mol. Evol. (1998) In press STANDARD No information REFERENCE 15 (bases 1 to 121524) AUTHORS Douglas,S.E. TITLE Direct Submission JOURNAL Submitted (08-JAN-1998) Institute for Marine Biosciences, National Research Council, 1411 Oxford Street, Halifax, Nova Scotia B3H 3Z1, Canada STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: AF041468 BASE COUNT 870 a 565 c 809 g 631 t 2364 others ORIGIN 1 |--------- ---------- --aaaucaag cgaa---UAA GAGCUUAAGU UGGAUA|CCU 61 -AGG|CAUUC AG|AA|GCGA UGAAG-GG|C GUG(ACUA-- ----CC-)G| ACG-AAAUGU 121 UUCGGG|GAG CU(------- -----G-GA- AGUA------ -----)GGCU UUG-AUCCGG 181 AAGUA|CCCG AA-UGAG(GA AA)CUC|--- ----(----- --uu--agu) --------AC 241 UACAUAUC(G A-ACACA--U A)AAU-AUG- ---U-AAGAG C-gaAC|CUG GUGAAUU|GA 301 (AACA)UCUC AGU-AACCAG AGGAAAAGAA AGC(AAUA-- )GCG-AU|UC CCACAGUAGC 361 -(GGCGA)GC GA-AAAGGGA -acagccuaa acuac----- ---------- (uuuu---)- 421 ---------- ----guaggg ucgu-gggac aauau----- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --auaauaga 781 ugaguaaaaa uu-agguGAA gugu-u(u-g gaau)a-aua -cac|g(aaa )caagg(-ug 841 auagu)-cCU GUAaccaaaa auuuagacuc -cuag----- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- -------uau uguauccc-- -GAGUAGCAU GGGA(CACGU 1141 GAAA)CCCCG UGUGAAUCUG CGAG(GACCA C)CUCGUAAG GCUAA-AUAU UCCUGAAUGA 1201 CCGAUAGCGA ACAAGUACC( GCGA)GGGAA AGGUGAAAA- GAACCCC(gg -aa-)GGGGA 1261 GUGAAAAAGA ACAUGAAAGC UU---AAGCU UACAAGCAGU GGAAGAac-g ---------- 1321 ------(--a cuaaa-)--- ---------- ----cgu--U -UAACCUCGU ACCU(GUUGA 1381 AG|A)AUGA| GCCGGCGACU UGUAGGUAGU GGC------- --AGGUU-AA GGUA(---ga 1441 a--aa)UACC -GGAGCCAgA -GU(-GAAA) GCG----AGC UU(uaa-ua) gagcguu--- 1501 ---------- ---------- ---------- -----uuGUC ACUGUUUACA GACCCGAACC 1561 CGGAUGAUCU AACCAUGGC| CAGCGUGAAG CUUAGG(UAA C)ACUAAGUG GAGGUGCGAA 1621 CCGACUGAU( GUUGAAAA)A UCAG|CGGAU GAGCUGUGGU UAG-GGGU(G AAAU)GCCAA 1681 UCGA-AUCCG GAGCUAGCUG GUUCUCCCCG -AAAUGCGU- (UUAG)-GCG CAGC|G-AUU 1741 GAUg------ ---------- ---------c |-ucc-|aac -UUAG|GGGU AA|-AGC-AC 1801 UGU-UUCGGU GC-GG|GCUG C(UAAC-)GC GGUACCA-AA UCGAU-GCAA ACUCUGAAUA 1861 |CUAAG-U-- ---------- ---------- ---gug---- ua|-gucA-A U-CAGUAAGA 1921 CUGUGGGG(G AUAAG)CUCC AU--UGUCAA AAGGG(AAAC AG)CCCAGAC CACCAGUUAA 1981 GGC|CCCU-A AAUA-AUUG- CUAAGUG--A UAAAGGAUGU -GGGAAUGCU GA---GACAA 2041 UCAGGAGGUU CGC(CUAGAA GCA)GCUAU- CCU|--U(UA A)A|GAGUGC (GUAAUA)GC 2101 |UCACUGAU- CAAGCGCACC UGC|GCCGAA AAUG-ACUGG GACU-----A AGUAA-UU|U 2161 |GCCGAAGCU |GUGG|gau- --------(u uuau------ ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ------)--- -------auc GGUAGGGGAG |CGUU-CUAC AAuagau-a- GAAGCAUUA- 2521 AU(GAAA)AU G-GAUGUGG| ACAAAGUAGA AGUGAGAAUG UCGGC|UUGA GUAGCGAAAA 2581 CAUUGG(UGA GAA-U)CCAA UG|CCCCGAA AACCUA-AGG AUUCCUC-CG GAAGG(CUCG 2641 U)CC|GCGGA GGGUAAGU|C AG|GACCUAA GGCGAGGCC- --(-GAAA)- --GGCGUAGC 2701 UA-AUGG-AC AACGGG(UUA AUAUU)CCCG U|AC|ua-u- -guauu-guu ---------- 2761 ---------- ---------- ---------- gauaa----- cgagggacgg ag--aaggcu 2821 a-aaucag|c -ug-ga-(-- --uguuggu- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- --------)- uaccag-|uu ua-------- --------ag 3061 cauucaaggu g--------- ---------- ---------- -----uugau g-agc-ag(a 3121 g-aa---a-) au-|g--cuc uga------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ------gcu- 3301 aaaguguu-a cga|cga-|- ---------- ---------- ---------- ---------- 3361 -aguac(--u aa-g--)gua cug------- ---------- ---------- --------aa 3421 gugauu--ga uguc-aug-| cuuccaagaa aagcucgaau uaucuu---- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- --------a- -aa-caau-a uaua|c|CUG UACCACAAA- CC(GACACA) 3601 GG|---UGG- GU-AA-GUA- (-GAAUA)-U ACUAA-GG-G GC||GCGAGA UAACUCUCUC 3661 UAAGGAA-CU CGGCAAAAUU ACCUCGUAAC (UUUG)GAAG AAGAGGU|AC CCUu------ 3721 ---------- (-gaaa-)-- ---------- -----aAGGG U|U(GC-A)A UGAAUAGACC 3781 CUGG|CGACU GU(UUACCAA AA)ACACAGG UCUCCG|CGA AUUC(GUAA) GAAUAAGUAU 3841 GGGGGCUGAC GCC-UGCCCA GU|GCCGGAA GGUUAAAGAA GUUGGUCAAU C-------(c 3901 -ucg)----- ---------- ---------- ---------- --------GA UGA-AGCUAG 3961 CGACUGAAGC C|CCGGUGAA C|GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC 4021 GAAAUUCCUU |GUCGGG(UA AGU)UCCGAC |CCGCACGAA AGGCGUAACG A-UCAGGGUG 4081 CUGUCUCGGA GAGAGACUCG |GCGAAAUA| GAAUUGU-CU G(UG-AAGAU G)CGGACUAC 4141 CUGCACCUGG ACAG-AAAGA CCCUAUGA|A GCUUUACUGU |AUCUUGGAA UU|GGGU-UU 4201 GGUCUUUACU UGCGCAG-GA UAGGUGGGAG GCAGU-GAAA AUAGUCU(UG CG)GGACUAU 4261 UAGAGCCAAC -GGUGAGAUA -CCACU|CU- AGUAAAGAU- AAAAUUCUAA -CUC-UAU-A 4321 CCG-(----- ---uu-auc) -CGGAUAGAG AACAGUUUCA AGUGGGCAGU UUGACUG(GG 4381 G)CGGUC|GC C-UCC(UAAA AGGUAAC)GG AGGC|G|U|G CAAAGGUUCC C|UCAGGCUG 4441 G--(UUGGAC A--)--UCAG UCGAA---GA |GU(G|UAAA G)GC-AUAA- --GGGAG--C 4501 UUGACUGCGA GAC(CCACAA )GUCGAGCAG AGAC(GAAA) GUCGGC|CUU AGUGAUCCGA 4561 CGGUU-CCG( AGUGGA)AGG |GCCGUCGCU CAAC|GGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUGA UCUCCCCCAA GA(GUUCACA )UCGACGGGG AGGUUUGGCA CCUCGAUGUC 4681 |GGCU|C|AU CGC|AUCC|U GGGGCG(GUA GUA)CGUC-C C-AAGGGU|U GGGC(UGUUC 4741 )GCCCAUG-A AAGCGGUACG CGAGCUGGGU UCAGAAC|GU C(GUGA)GAC AGUUCGGUCC 4801 AUAUCC|GGU GCAGG|CGUU AGAGUAUU|G A|GAGGU-GU CCCCCU(UAG UAC(GAGA)G 4861 GA-CC)GGGG GGA|-AUACA CCGCUGGUGU ACCAGU|UAU CGU(GC-CA) ACGGUAAACG 4921 CUGGGUAGCC AAGUGUAGAC G-GG-AUAAC UGCU(GAAAG CAUCUA)AGU AGGAAGCCCU 4981 CCUC|AAGAU GAGUACUCU| CA|CCGC--( -uuuaa)--G CGG-GU-AAG A|UC|ACGAC 5041 (AAGAACA)G UCGU-UU--- ---------- ---------- -----GAUAG |GCGUU|AGG 5101 UGUAAGUGCA (GUAA)UGUA U|UUAGCUA| A|GACGUACU AAUAGAUCGA ---GG|GCUU 5161 GAUUUA---| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS pl.G.the.2 5239 bp RNA RNA 15-SEP-1998 DEFINITION Chloroplast Guillardia theta.; . ACCESSION AF0414 8 X141 1 X623 9 X515 1 X145 4 X521 8 X529 2 X568 6 M765 KEYWORDS . SOURCE Chloroplast Guillardia theta. ORGANISM Chloroplast Guillardia theta. REFERENCE 1 (bases 47701 to 48415) AUTHORS Douglas,S.E. and Durnford,D.G. TITLE plastid-encoded in the chlorophyll c-containing alga Cryptomonas phi The small subunit of ribulose-1,5-bisphosphate carboxylase is JOURNAL Plant Mol. Biol. 13 (1), 13-20 (1989) STANDARD No information REFERENCE 2 (bases 45872 to 47981) AUTHORS Douglas,S.E., Durnford,D.G. and Morden,C.W. TITLE Nucleotide sequence of the gene for the large subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase from the chlorophyll c-containing Alga Cryptomonas F: evidence supporting the polyphyletic origin of plastids JOURNAL J. Phycol. 26, 500-508 (1990) STANDARD No information REFERENCE 3 (bases 43739 to 44938) AUTHORS Douglas,S.E. and Durnford,D.G. TITLE Nucleotide sequence of the genes for ribosomal protein S4 and tRNA(Arg) from the chlorophyll c-containing alga Cryptomonas phi JOURNAL Nucleic Acids Res. 18 (7), 1903 (1990) STANDARD No information REFERENCE 4 (bases 18535 to 19351) AUTHORS Douglas,S.E. and Durnford,D.G. TITLE Sequence analysis of the plastid rDNA spacer region of the chlorophyll c-containing alga Cryptomonas phi JOURNAL DNA Seq. 1 (1), 55-62 (1990) STANDARD No information REFERENCE 5 (bases 34539 to 35380) AUTHORS Reith,M. and Douglas,S. TITLE Localization of beta-phycoerythrin to the thylakoid lumen of Cryptomonas phi does not involve a signal peptide JOURNAL Plant Mol. Biol. 15 (4), 585-592 (1990) STANDARD No information REFERENCE 6 (bases 110917 to 113854) AUTHORS Douglas,S.E. TITLE Unusual organization of a ribosomal protein operon in the plastid genome of Cryptomonas phi: evolutionary considerations JOURNAL Curr. Genet. 19 (4), 289-294 (1991) STANDARD No information REFERENCE 7 (bases 40675 to 42376) AUTHORS Douglas,S.E. and Turner,S. TITLE Molecular evidence for the origin of plastids from a cyanobacterium-like ancestor JOURNAL J. Mol. Evol. 33 (3), 267-273 (1991) STANDARD No information REFERENCE 8 (bases 96129 to 98906) AUTHORS Wang,S.L. and Liu,X.Q. TITLE The plastid genome of Cryptomonas phi encodes an hsp70-like protein, a histone-like protein, and an acyl carrier protein JOURNAL Proc. Natl. Acad. Sci. U.S.A. 88 (23), 10783-10787 (1991) STANDARD No information REFERENCE 9 (bases 106789 to 108216) AUTHORS Douglas,S.E. TITLE A secY homologue is found in the plastid genome of Cryptomonas phi JOURNAL FEBS Lett. 298 (1), 93-96 (1992) STANDARD No information REFERENCE 10 (bases 42198 to 44153) AUTHORS Douglas,S.E. and Reith,M.E. TITLE A bchI homolog, encoding a subunit of Mg chelatase, is located on the plastid genomes of red and cryptomonad algae JOURNAL J. Mar. Biotechnol. 1, 135-141 (1993) STANDARD No information REFERENCE 11 (bases 82327 to 84479) AUTHORS Douglas,S.E. and Murphy,C.A. TITLE Structural, transcriptional and phylogenetic analyses of the atpB gene cluster from the plastid of Cryptomonas F (Cryptophyceae) JOURNAL J. Phycol. 30, 329-340 (1994) STANDARD No information REFERENCE 12 (bases 98901 to 114602) AUTHORS Wang,S.L., Liu,X.Q. and Douglas,S.E. TITLE The large ribosomal protein gene cluster of a cryptomonad plastid: gene organization, sequence and evolutionary implications JOURNAL Biochem. Mol. Biol. Int. 41 (5), 1035-1044 (1997) STANDARD No information REFERENCE 13 (bases 61067 to 68605) AUTHORS Leitsch,C.E.W., Kowallik,K.V. and Douglas,S.E. TITLE The atpA gene cluster of a cryptomonad, Guillardia theta: A piece in the puzzle of chloroplast genome development JOURNAL J. Phycol. (1998) In press STANDARD No information REFERENCE 14 (bases 1 to 121524) AUTHORS Douglas,S.E. and Penny,S.L. TITLE The plastid genome from the cryptomonad alga, Guillardia theta: complete sequence and conserved synteny groups confirm its common ancestry with red algae JOURNAL J. Mol. Evol. (1998) In press STANDARD No information REFERENCE 15 (bases 1 to 121524) AUTHORS Douglas,S.E. TITLE Direct Submission JOURNAL Submitted (08-JAN-1998) Institute for Marine Biosciences, National Research Council, 1411 Oxford Street, Halifax, Nova Scotia B3H 3Z1, Canada STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: AF041468 BASE COUNT 870 a 564 c 809 g 632 t 2364 others ORIGIN 1 |--------- ---------- --aaaucaag cgaa---UAA GAGCUUAAGU UGGAUA|CCU 61 -AGG|CAUUC AG|AA|GCGA UGAAG-GG|C GUG(ACUA-- ----CC-)G| ACG-AAAUGU 121 UUCGGG|GAG CU(------- -----G-GA- AGUA------ -----)AGCU UUG-AUCCGG 181 AAGUA|CCCG AA-UGAG(GA AA)CUC|--- ----(----- --uu--agu) --------AC 241 UACAUAUC(G A-ACACA--U A)AAU-AUG- ---U-AAGAG C-gaAC|CUG GUGAAUU|GA 301 (AACA)UCUC AGU-AACCAG AGGAAAAGAA AGC(AAUA-- )GCG-AU|UC CCACAGUAGC 361 -(GGCGA)GC GA-AAAGGGA -acagccuaa acuac----- ---------- (uuuu---)- 421 ---------- ----guaggg ucgu-gggac aauau----- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --auaauaga 781 ugaguaaaaa uu-agguGAA gugu-u(u-g gaau)a-aua -cac|g(aaa )caagg(-ug 841 auagu)-cCU GUAaccaaaa guuuagacuc -cuag----- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- -------uau uguauccc-- -GAGUAGCAU GGGA(CACGU 1141 GAAA)CCCCG UGUGAAUCUG CGAG(GACCA C)CUCGUAAG GCUAA-AUAU UCCUGAAUGA 1201 CCGAUAGCGA ACAAGUACC( GCGA)GGGAA AGGUGAAAA- GAACCCC(gg -aa-)GGGGA 1261 GUGAAAAAGA ACAUGAAAGC UU---AAGCU UACAAGCAGU GGAAGAac-g ---------- 1321 ------(--a cuaaa-)--- ---------- ----cgu--U -UAACCUCGU ACCU(GUUGA 1381 AG|A)AUGA| GCCGGCGACU UGUAGGUAGU GGC------- --AGGUU-AA GGUA(---ga 1441 a--aa)UACC -GGAGCCAgA -GU(-GAAA) GCG----AGC UU(uaa-ua) gagcguu--- 1501 ---------- ---------- ---------- -----uuGUC ACUGUUUACA GACCCGAACC 1561 CGGAUGAUCU AACCAUGGC| CAGCGUGAAG CUUAGG(UAA C)ACUAAGUG GAGGUGCGAA 1621 CCGACUGAU( GUUGAAAA)A UCAG|CGGAU GAGCUGUGGU UAG-GGGU(G AAAU)GCCAA 1681 UCGA-AUCCG GAGCUAGCUG GUUCUCCCCG -AAAUGCGU- (UUAG)-GCG CAGC|G-AUU 1741 GAUg------ ---------- ---------c |-ucc-|aac -UUAG|GGGU AA|-AGC-AC 1801 UGU-UUCGGU GC-GG|GCUG C(UAAC-)GC GGUACCA-AA UCGAU-GCAA ACUCUGAAUA 1861 |CUAAG-U-- ---------- ---------- ---gug---- ua|-gucA-A U-CAGUAAGA 1921 CUGUGGGG(G AUAAG)CUCC AU--UGUCAA AAGGG(AAAC AG)CCCAGAC CACCAGUUAA 1981 GGC|CCCU-A AAUA-AUUG- CUAAGUG--A UAAAGGAUGU -GGGAAUGCU GA---GACAA 2041 UCAGGAGGUU CGC(CUAGAA GCA)GCUAU- CCU|--U(UA A)A|GAGUGC (GUAAUA)GC 2101 |UCACUGAU- CAAGCGCACC UGC|GCCGAA AAUG-ACUGG GACU-----A AGUAA-UU|U 2161 |GCCGAAGCU |GUGG|gau- --------(u uuau------ ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ------)--- -------auc GGUAGGGGAG |CGUU-CUAC AAuagau-a- GAAGCAUUA- 2521 AU(GAAA)AU G-GAUGUGG| ACAAAGUAGA AGUGAGAAUG UCGGC|UUGA GUAGCGAAAA 2581 CAUUGG(UGA GAA-U)CCAA UG|CCCCGAA AACCUA-AGG AUUCCUC-CG GAAGG(CUCG 2641 U)CC|GCGGA GGGUAAGU|C AG|GACCUAA GGCGAGGCC- --(-GAAA)- --GGCGUAGC 2701 UA-AUGG-AC AACGGG(UUA AUAUU)CCCG U|AC|ua-u- -guauu-guu ---------- 2761 ---------- ---------- ---------- gauaa----- cgagggacgg ag--aaggcu 2821 a-aaucag|c -ug-ga-(-- --uguuggu- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- --------)- uaccag-|uu ua-------- --------ag 3061 cauucaaggu g--------- ---------- ---------- -----uugau g-agc-ag(a 3121 g-aa---a-) au-|g--cuc uga------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ------gcu- 3301 aaaguguu-a cga|cga-|- ---------- ---------- ---------- ---------- 3361 -aguac(--u aa-g--)gua cug------- ---------- ---------- --------aa 3421 gugauu--ga uguc-aug-| cuuccaagaa aagcucgaau uaucuu---- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- --------a- -aa-caau-a uaua|c|CUG UACCACAAA- CC(GACACA) 3601 GG|---UGG- GU-AA-GUA- (-GAAUA)-U ACUAA-GG-G GC||GCGAGA UAACUCUCUC 3661 UAAGGAA-CU CGGCAAAAUU ACCUCGUAAC (UUUG)GAAG AAGAGGU|AC CCUu------ 3721 ---------- (-gaaa-)-- ---------- -----aAGGG U|U(GC-A)A UGAAUAGACC 3781 CUGG|CGACU GU(UUACCAA AA)ACACAGG UCUCCG|CGA AUUC(GUAA) GAAUAAGUAU 3841 GGGGGCUGAC GCC-UGCCCA GU|GCCGGAA GGUUAAAGAA GUUGGUCAAU C-------(c 3901 -ucg)----- ---------- ---------- ---------- --------GA UGA-AGCUAG 3961 CGACUGAAGC C|CCGGUGAA C|GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC 4021 GAAAUUCCUU |GUCGGG(UA AGU)UCCGAC |CCGCACGAA AGGCGUAACG A-UCAGGGUG 4081 CUGUCUCGGA GAGAGACUCG |GCGAAAUA| GAAUUGU-CU G(UG-AAGAU G)CGGACUAC 4141 CUGCACCUGG ACAG-AAAGA CCCUAUGA|A GCUUUACUGU |AUCUUGGAA UU|GGGU-UU 4201 GGUCUUUACU UGCGCAG-GA UAGGUGGGAG GCAGU-GAAA AUAGUCU(UG CG)GGAUUAU 4261 UAGAGCCAAC -GGUGAGAUA -CCACU|CU- AGUAAAGAU- AAAAUUCUAA -CUC-UAU-A 4321 CCG-(----- ---uu-auc) -CGGAUAGAG AACAGUUUCA AGUGGGCAGU UUGACUG(GG 4381 G)CGGUC|GC C-UCC(UAAA AGGUAAC)GG AGGC|G|U|G CAAAGGUUCC C|UCAGGCUG 4441 G--(UUGGAC A--)--UCAG UCGAA---GA |GU(G|UAAA G)GC-AUAA- --GGGAG--C 4501 UUGACUGCGA GAC(CCACAA )GUCGAGCAG AGAC(GAAA) GUCGGC|CUU AGUGAUCCGA 4561 CGGUU-CCG( AGUGGA)AGG |GCCGUCGCU CAAC|GGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUGA UCUCCCCCAA GA(GUUCACA )UCGACGGGG AGGUUUGGCA CCUCGAUGUC 4681 |GGCU|C|AU CGC|AUCC|U GGGGCG(GUA GUA)CGUC-C C-AAGGGU|U GGGC(UGUUC 4741 )GCCCAUG-A AAGCGGUACG CGAGCUGGGU UCAGAAC|GU C(GUGA)GAC AGUUCGGUCC 4801 AUAUCC|GGU GCAGG|CGUU AGAGUAUU|G A|GAGGU-GU CCCCCU(UAG UAC(GAGA)G 4861 GA-CC)GGGG GGA|-AUACA CCGCUGGUGU ACCAGU|UAU CGU(GC-CA) ACGGUAAACG 4921 CUGGGUAGCC AAGUGUAGAC G-GG-AUAAC UGCU(GAAAG CAUCUA)AGU AGGAAGCCCU 4981 CCUC|AAGAU GAGUACUCU| CA|CCGC--( -uuuaa)--G CGG-GU-AAG A|UC|ACGAC 5041 (AAGAACA)G UCGU-UU--- ---------- ---------- -----GAUAG |GCGUU|AGG 5101 UGUAAGUGCA (GUAA)UGUA U|UUAGCUA| A|GACGUACU AAUAGAUCGA ---GG|GCUU 5161 GAUUUA---| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS (3)-Glauco 5239 bp RNA RNA 21-JAN-1998 DEFINITION GLaucocystophyceae. ACCESSION No information KEYWORDS No information. SOURCE GLaucocystophyceae. ORGANISM GLaucocystophyceae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5239 others ORIGIN 1 |x~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 61 ~~~~|~~~~~ ~~|~~|~~~~ ~~~~~~~~|~ ~~~(~~~~~~ ~~~~~~~)~| ~~~~~~~~~~ 121 ~~~~~~|~~~ ~~(~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 181 ~~~~~|~~~~ ~~~~~~~(~~ ~~)~~~|~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~(~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~(~~~ )~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~------- 1321 ------~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 1381 ~~|~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 1801 ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~(~~ ~)~|~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~~-~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~-~~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~)~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~-~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~--~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~ // LOCUS Cya.parado 5239 bp RNA RNA 11-JAN-191 DEFINITION Cyanophora paradoxa. ACCESSION No information KEYWORDS No information. SOURCE Cyanophora paradoxa. ORGANISM Cyanophora paradoxa. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: U30821 LOCUS CPU30821 135599 bp DNA circular PLN 10-OCT-1995 DEFINITION Cyanophora paradoxa cyanelle, complete genome. ACCESSION U30821 KEYWORDS . SOURCE Cyanophora paradoxa. ORGANISM Cyanelle Cyanophora paradoxa Eukaryotae; mitochondrial eukaryotes; Glaucocystophyceae; Cyanophoraceae; Cyanophora. REFERENCE 1 (bases 1 to 135599) AUTHORS Stirewalt,V.L., Michalowski,C.B., Luffelhardt,W., Bohnert,H.J. and Bryant,D.A. TITLE Nucleotide sequence of the cyanelle genome from Cyanophora paradoxa JOURNAL Unpublished REFERENCE 2 (bases 1 to 135599) AUTHORS Bryant,D.A. TITLE Direct Submission JOURNAL Submitted (01-JUL-1995) Donald A. Bryant, Biochemistry and Molecular Biology, The Pennsylvania State University, S-234 Frear Bldg., University Park, PA 16802, USA COMMENT NCBI gi: 1016083 FEATURES Location/Qualifiers source 1..135599 /cyanelle /strain="Pringsheim LB555" /organism="Cyanophora paradoxa" repeat_region 1..11285 /note="IR-A" /rpt_type=inverted rRNA 294..1788 /gene="rrsA" /product="16S ribosomal RNA" tRNA 1889..1962 /gene="trnI" /note="anticodon (GAU)" /product="tRNA isoleucine" tRNA 1966..2038 /gene="trnA" /note="anticodon (UGC)" /product="tRNA alanine" rRNA 2076..5001 /gene="rrlA" /product="23S ribosomal RNA" rRNA 5102..5219 /gene="rrfA" /product="5S ribosomal RNA" CDS 5727..7598 /gene="dnaK" /note="NCBI gi: 1016084" /codon_start=1 /function="molecular chaperone; heat-shock protein; protein folding" /product="DnaK" /translation="MEVKHMGKIVGIDLGTTNSVVAVMEGGKPTVITNAEGFRTTPSV VAYTKTGDRLVGQIAKRQAVLNPGNTFYSVKRFIGRKFDEVTEEAKQVPYKVTGTQNV RIECPALQTSFTPEEISAQVLRKLAEDASKYIGEPVTQAVITVPAYFNDSQRQATKDA GKIAGLEVLRIINEPTAASLAYGLDKKKNETILVFDLGGGTFDVSILEVGDGVFEVLS TSGDTHLGGDDFDKKLVDFFIEEFQKLENINLREDQQALQRLTEAAEKAKIELSSVTQ TEITLPFLSLTPSGPKHFDTTLNRAKFEELCSTLIDRCRIPVETALKDAKLTKEDIDE VVLVGGSTRIPAVRELVQKVLDKVPKQSVNPDEVVAVGAAVQAGVLAGEVKDIVLLDV TPLSLGVETLGGVMSKIIVRNTTIPTQKSELFSTATDGQTNVEIHVLQGERGFAKDNK SLGTFRLDGIAPAPRGVPQIEVTFDIDANGILSVTAKDKGTGKEKSITITGASTLSQD EVERMVQEAEKNAAQDKENRQKIELRNQAESLINQAERQLKEFKLEPNVQAPIEQTIQ QLQTALKEDNLEQVQSLCQELQNSLLEIGKQVYSKTETTTPNKNEEDVIDASFSEEK" BASE COUNT 46690 a 21195 c 20119 g 47595 t ORIGIN BASE COUNT 843 a 591 c 858 g 634 t 2313 others ORIGIN 1 |--------- ---------- ---GGUCAAG UGAC---CAA GGGCUUACGG UGGAUA|CCU 61 -AGG|CAUUC AG|AA|GCGA UGAAG-GG|C GCG(GUAA-- ----CC-)G| GCG-AAACGC 121 UUCGGA|GAG CU(------- -----G-GA- AACA------ -----)AGCU UUG-AUCCGG 181 AGAUA|CCCG AA-UGAG(GC AA)CUC|--- ----(----- --cu--ugu) --------AC 241 UAUCUACU(G A-AUAGA--U A)AGU-AGA- ---UAA-gAG C-gaAC|UCG GUGAACU|GA 301 (AACA)UCUU AGU-AACCGA AGGAAAAGAA AGC(AAAA-- )GCG-AU|UC UCUUAGUAGC 361 -(GGCGA)GC GA-AACGGGA -CCAGCCUAA Acuaucgag- ---------- (cuugu--)- 421 ---------- cuugauaggg uugu-gggac agcau----- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------a au-----gau 781 aucgcgcgaa uu-agaaGAA gcaa-u(u-- gaau)g-uug -cac|c(uua )gaGGG(-UG 841 AAAGU)-CCC GUAuucgaaa auucaaacga guua------ ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- --------gc uguauccc-- -GAGUAGCAU GGGG(CACGU 1141 GAAA)UCCCG UGUGAAUCUG CGAG(GACCA C)CUCGUAAG GCUAA-AUAU UCCUGAAUGA 1201 CCGAUAGCGC AACAGUACC( GUGA)GGGAA AGGUGAAAA- GAACCCC(GG GCA-)GGGGA 1261 GUGAAAUAGA AUAUGAAACC GU---AAGCC UACAAGCAGU AGAAGGAU-g ---------- 1321 ------(--- uuga--)--- ---------- ----cAU--C -UGACUGCGU GCCU(GUUGA 1381 AG|A)AUGA| GCCGGCGACU UAUAGGUAGU GGC------- --AGGUU-AA ggua(----a 1441 agaau)uacu -GGAGCCCUA -GC(-GAAA) GCG----AGU UU(GUA-UA) GAGCGU---- 1501 ---------- ---------- ---------- ----uuuGUC ACUAUUUAUA GACCCGAACC 1561 CGGGUGAUCU AACCAUGGC| CAGGGUGAAG CUUGGG(UAA A)ACUAAGUG GAGGCCCGAA 1621 CUGAUUAAU( GUUGAAAA)A UUAC|CGGAU GAGUUGUGGU UAG-GGGU(G AAAU)GCCAA 1681 UCGA-ACCCG GAGCUAGCUG GUUCUCCCCG -AAAUGUGU- (UGAG)-GCG CAGC|G-GUU 1741 GAGau----- ---------- ---------u |-aua-|-AC -UUAG|GGGU AA|-AGC-AC 1801 UGU-UUCGGU GC-GG|GCUG C(gaga-)GC GGUACCA-AA UCGAG-GCAA ACUCUGAAUA 1861 |CUAAG-U-- ---------- ---------- --gaac---- -a|-CUCA-G C-CAGUUAGA 1921 CAGUGGGG(G AUAAG)CUCC AU--UGUCAA GAGGG(AAAC AG)CCCAGAC CACCAGUUAA 1981 GGC|CCCU-A AAUA-GUAG- CUAAGUG--G CAAAGGAGGU -GGGAGUGCU UA---GACAA 2041 CCAGGAGGUU UGC(CUAGAA GCA)GCAAU- CCU|--U(UA A)A|GAGUGC (GUAAUA)GC 2101 |UCACUGGU- CAAGCGCUCC UGC|GCCGAA AAUG-AAUGG GACU-----A AGCUA-UU|U 2161 |GCCGAAGCU |GUGG|gaug ua------(c uaaaaaauua ua-------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ------)--- ----uacauc GGUAGGGGAG |CGUU-CCGU CAUAGGU-U- GAAGCAUUU- 2521 AC(GUGA)GU A-AGUGUGG| ACGAUACGGA AGUGAGAAUG UCGGC|UUGA GUAGCGAAAA 2581 CAUUGG(UGA GAA-U)CCAA UG|CCCCGAA AACCUA-AGG GUUCCUuuCG GAAGG(CUCG 2641 U)CC|ACGAA GGGUGAGU|C AG|GACCUAA GGCGAGGCC- --(-GAAA)- --GGCGUAGU 2701 CG-AUGG-AU AACGGG(UCA AAAUU)CCCG U|AC|cg-u- -uuauu-guu ---------- 2761 ---------- ---------- --------ug ugu------- agagggacgg ag--aaggcu 2821 auaccag-|c -cg-gug(-- ---auugguu gu-------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- --------)u a-cugg-|uu ua-------- --------ag 3061 uaucugaggc ---------- ---------- ---------- ----uuugag a-gau-gg(a 3121 g-aa---a-) ac-|a--ucu ug-------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- -----agcu- 3301 gaaguaca-a aua|cga-|- ---------- ---------- --------ua cguaggacag 3361 uuuuuc(--c uu-gu-)gaa agauucgaau acg------- ---------- --------ga 3421 agugguuaga uguc-acg-| cuuccaagaa aagcucu--a aacacguu-- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- aag-caau-a aaug|C|CUG UACCCAAAA- CC(GACACA) 3601 GG|---UGG- GU-AA-GUA- (-GAGAA)-U ACUAA-GG-G GC||GCGAGA UAACUCUCUC 3661 UAAGGAA-CU CGGCAAAAUA GCCCCGUAAC (UUCG)GGAG AAGGGGU|GC CCUU------ 3721 ---------- (-uuuau)-- ---------- -----AAGGG C|C(GC-A)G UGACCAGGCC 3781 CAGG|CGACU GU(UUACCAA AA)ACACAGG UCUCCG|CAA AUUC(GUAA) GAAGAAGUAU 3841 GGGGGCUGAC GCC-UGCCCA GU|GCCGGAA GGUUAAGGAA GUUGGUUAGC C-------(a 3901 -uua)----- ---------- ---------- ---------- --------GG UGA-AGCUAG 3961 CGACCGAAGC C|CCGGUGAA C|GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC 4021 GAAAUUCCUU |GUCAGG(UA AGU)UCUGAC |CCGCACGAA AGGCGUAACG A-UCUGGGCG 4081 CUGUCUCGGA GAGAGACUCG |GCGAAAUA| GACAUGU-CU G(UG-AAGAU G)CGGACUAC 4141 CUGCACCAGG ACAG-AAAGA CCCUAUGA|A GCUUUACUGU |AGCCUGAUA UU|GGGU-UC 4201 GGGCUUUUCU UGCGCAG-UA UAGGUGGGAG GCUAU-GAUA GAAUCCU(UG UG)GGGAUUC 4261 UGGAGCCGUC -AGUGAGAUA -CCACU|CU- GGAAGAGCU- AGAAUUCUAA -CUU-UA--A 4321 GCCG(----- ---UU-AUC) -CGGCUAAAG AACAGUGUCA GGUGGGCAGU UUGACUG(GG 4381 G)CGGUC|GC C-UCC(UAAA AAGUAAC)GG AGGC|G|C|G CAAAGGUUCC C|UCAGGCUG 4441 G--(ACAGAA A--)--UCAG CCGAA---GA |GU(G|UAAA G)GC-AGAA- --GGGAG--C 4501 UUGACUGUAA GAC(CUACAA )GUCGAACAG GAAC(GAAA) GUUGGC|CUU AGUGAUCCGA 4561 CGGUA-CCG( AGUGGA)AGG |GCCGUCGCU CAAC|GGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUGA UCUCCCCCAA GA(GUCCACA )UCGACGGGG AGGUUUGGCA CCUCGAUGUC 4681 |GGCU|C|AU CGC|AACC|U GGGGCG(GUA GUA)CGUC-C C-AAGGGU|U GGGC(UGUUC 4741 )GCCCAUUUA AAGCGGUACG UGAGCUGGGU UCAGAAC|GU C(GUGA)GAC AGUUCGGUCC 4801 AUAUCC|GGU GCAGG|CGUU AGAGCAUU|G A|GAGGAAGC UCUCCC(UUG UAC(GAGA)G 4861 GA-UC)GGGA GGG|-ACACA CCGCUGGUGU AUCAGU|UAU CGU(GC-CA) ACGGUAaacG 4921 CUGAGUAGCU AUGUGUGGA- GAGG-AUAAC CGCU(GAAAG CAUCUA)AGU GGGAAGCCCA 4981 CCUC|AAGAU GAGUGCUCU| CA|UCGC--( caucga)--G CGA-GU-AAG A|UC|ACGGC 5041 (AAGAACA)G CCGU-UU--- ---------- ---------- -----UAUAG |GUGUU|AAG 5101 UGUAAGUGUA (GUAA)UACA U|UCAGCUA| A|GACAUACU AAUAGAUCGA ---GG|GCUU 5161 GACUU----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS (3)-Rhodop 5239 bp RNA RNA 21-JAN-1998 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5239 others ORIGIN 1 |x~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 61 ~~~~|~~~~~ ~~|~~|~~~~ ~~~~~~~~|~ ~~~(~~~~~~ ~~~~~~~)~| ~~~~~~~~~~ 121 ~~~~~~|~~~ ~~(~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 181 ~~~~~|~~~~ ~~~~~~~(~~ ~~)~~~|~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~(~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~(~~~ )~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~------- 1321 ------~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 1381 ~~|~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 1801 ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~(~~ ~)~|~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~~-~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~-~~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~)~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~-~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~--~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~ // LOCUS chl.P.pu.1 5239 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: L07259 LOCUS PTERGC 1080 bp ds-DNA PLN 26-OCT-1993 DEFINITION Porphyra purpurea 23S ribosomal RNA gene, 3' end, 5S ribosomal RNA gene, complete cds. ACCESSION L07259 KEYWORDS 23S ribosomal RNA; 5S ribosomal RNA; ribosomal RNA operon; rrnA operon. SOURCE Chloroplast Porphyra purpurea (organelle Chloroplast Porphyra purpurea) DNA. ORGANISM Chloroplast Porphyra purpurea Eukaryota; Rhodophycota; Rhodophyceae; Bangiophycideae; Bangiales; Bangiaceae. REFERENCE 1 (bases 1 to 1080) AUTHORS Reith,M.E. and Munholland,J.M. TITLE The Ribosomal RNA repeats are non-identical and directly oriented in the chloroplast genome of the red alga, Porphyra purpurea JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers repeat_region <1..873 /function="ribosomal rRNA operon" /rpt_type=DIRECT /evidence=EXPERIMENTAL /citation=[1] rRNA <1..713 /product="23S ribosomal RNA" /gene="23S rRNA" /citation=[1] /note="The two copies of the 23S rRNA genes of Porphyra purpurea differ at five known positions.; putative" misc_difference replace(15,"t") /citation=[1] /note="one of five known differences between the two copies of the 23S rRNA genes of the P. purpurea chloroplast genome" misc_difference replace(511,"t") /citation=[1] /note="one of five differences between the two copies of the 23S rRNA genes of the P. purpurea chloroplast genome" misc_difference replace(546,"a") /citation=[1] /note="one of five differences between the two copies of the 23S rRNA genes of the P. purpurea chloroplast genome" misc_difference replace(675,"t") /citation=[1] /note="one of five differences between the two copies of the 23S rRNA genes of the P. purpurea chloroplast genome" misc_difference replace(677,"a") /citation=[1] /note="one of five differences between the two copies of the 23S rRNA genes of the P. purpurea chloroplast genome" misc_difference replace(724,"a") /citation=[1] /note="one of three differences between the two copies of the 23S -5S spacer region of the P. purpurea chloroplast genome" misc_difference replace(728,"a") /citation=[1] /note="one of three differences between the two copies of the 23S -5S spacer region of the P. purpurea chloroplast genome" misc_difference replace(730,"g") /citation=[1] /note="one of three differences between the two copies of the 23S -5S spacer region of the P. purpurea chloroplast genome" rRNA 750..870 /product="5S ribosomal RNA" /gene="5S rRNA" /citation=[1] /note="There are four differences between the two copies of the 5S rRNA genes in the P. purpurea chloroplast genome.; putative" misc_difference replace(786,"c") /citation=[1] /note="one of four differences between the two copies of the 5S rRNA genes of the P. purpurea chloroplast genome" misc_difference replace(811,"c") /citation=[1] /note="one of four differences between the two copies of the 5S rRNA genes of the P. purpurea chloroplast genome" misc_difference replace(842,"t") /citation=[1] /note="one of four differences between the two copies of the 5S rRNA genes of the P. purpurea chloroplast genome" misc_difference replace(849,"g") /citation=[1] /note="one of four differences between the two copies of the 5S rRNA genes of the P. purpurea chloroplast genome" terminator 887..950 /citation=[1] /note="putative" source 1..1080 /organism="Porphyra purpurea" /chloroplast BASE COUNT 305 a 217 c 268 g 290 t ORIGIN BASE COUNT 194 a 154 c 210 g 155 t 4526 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 61 ~~~~|~~~~~ ~~|~~|~~~~ ~~~~~~~~|~ ~~~(~~~~~~ ~~~~~~~)~| ~~~~~~~~~~ 121 ~~~~~~|~~~ ~~(~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 181 ~~~~~|~~~~ ~~~~~~~(~~ ~~)~~~|~~~ ~~~~(~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 241 ~~~~~~~~(~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~|~~ 301 (~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~|~~ ~~~~~~~~~~ 361 ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~)~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~|~(~~~ )~~~~~(~~~ 841 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~------- 1321 ------(~~~ ~~~~~~)~~~ ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 1381 ~~|~)~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 1441 ~~~~~)~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ ~~(~~~~~~) ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~( ~~~~~~~~)~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~)~~~~ ~~~~|~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~|~~~ ~~~~~|~~~~ ~~|-~~~~~~ 1801 ~~~~~~~~~~ ~~~~~|~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|-~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 1981 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~|~~~(~~ ~)~|~~~~~~ (~~~~~~)~~ 2101 |~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ 2161 |~~~~~~~~~ |~~~~|~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~(~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ 2581 ~~~~~~(~~~ ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 2641 ~)~~|~~~~~ ~~~~~~~~|~ ~~|~~~~~~~ ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ ~|~~|~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~|~ ~~~~~~~(-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 3121 ~~~~~~~~~) ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~(~-~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~|~~~ ~~~~~~~~~~ ~~(~~~~~~) 3601 ~~|~~~~~~~ ~~-~~~~~~~ (~~~~~~)~~ ~~~~~~~~~~ ~~||~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ (-~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~(~~~~)~ ~~~~~~~~~~ 3781 ~~~~|~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~|~~~ ~~~~(~~~~) ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 3901 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~|~~~~~~~~ ~|~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ 4021 ~~~~~~~~~~ |~~~~~~(~~ ~~~)~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~| ~~~~~~~~~~ ~(~~~~~~~~ ~)~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ ~~|~~~~-~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~GAAUUCUAA -CCU-UGAAA 4321 GCCG(----- ---uu-auc) -CGGCCAAGG AACAGUUCCA GGUAGGCAGU UUGACUG(GG 4381 G)CGGUC|GC C-UCC(UAAA AAGUAAC)GG AGGC|G|U|G CAAAGGUUCU C|UCAGGCUG 4441 G--(UCGGAA A--)--UCAG UCGUA---GA |GU(G|UAAA G)GC-AUAA- --GAGAG--C 4501 UUGACUGUGA GAC(CUACAA )GUCGAACAG AGAC(GAAA) GUCGGC|CUU AGUGAUCCGG 4561 CGGUA-CCG( AGUGGA)AGG |GCCGUCGCU CAAC|GGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUGA UCUCCCCCAA GA(GUUCACA )UCGACGGGG AGGUUUGGCA CCUCGAUGUC 4681 |GGCU|C|AU CGC|AUCC|U GGGGCG(GUA GUA)CGUC-C C-AAGGGU|U GGGC(UGUUC 4741 )GCCCAUG-A AAGCGGUACG CGAGCUGGGU UCAGAAC|GU C(GUGA)GAC AGUUCGGUCC 4801 AUAUCC|GGU GUAGG|CGUU AGAGUAUU|G A|GAGGA-UU UCUCCU(UAG UAC(GAGA)G 4861 GA-CC)GGGA GAG|-ACGCA CCUCUGGUGU ACCAGU|UAU CGU(GC-CA) ACGGUAAACG 4921 CUGGGUAGCU AAGUACGGG- AAGG-AUAAC CGCU(GAAAG CAUCUA)AGU GGGAAGCCAA 4981 CCUC|AAGAU GAGUACUCU| CA|UUGU--( -uuuaa)--A CAA-GU-AAG G|UC|ACGGC 5041 (AAGACUA)G CCGU-UA--- ---------- ---------- -----UAUAG |GUAUC|AAG 5101 UAUAAGUGCA (GUAA)UGUA C|UCAGCUG| A|GAUAUACU AACAGACCGA ---GG|ACUU 5161 GACUAA---| --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS chl.P.pu.2 5239 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: L07260 LOCUS PTERGD 1064 bp ds-DNA PLN 26-OCT-1993 DEFINITION Porphyra purpurea chloroplast 23S ribosomal RNA gene, 3' end, 5S ribosomal RNA gene, complete cds. ACCESSION L07260 KEYWORDS 23S ribosomal RNA; 5S ribosomal RNA; ribosomal RNA operon; rrnB operon. SOURCE Chloroplast Porphyra purpurea (organelle Chloroplast Porphyra purpurea) DNA. ORGANISM Chloroplast Porphyra purpurea Eukaryota; Rhodophycota; Rhodophyceae; Bangiophycideae; Bangiales; Bangiaceae. REFERENCE 1 (bases 1 to 1064) AUTHORS Reith,M.E. and Munholland,J.M. TITLE The Ribosomal RNA repeats are non-identical and directly oriented in the chloroplast genome of the red alga, Porphyra purpurea JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers repeat_region <1..873 /function="ribosomal rRNA operon" /rpt_type=DIRECT /evidence=EXPERIMENTAL /citation=[1] rRNA <1..713 /product="23S ribosomal RNA" /gene="23S rRNA" /citation=[1] /note="The two copies of the 23S rRNA genes of Porphyra purpureadiffer at five known positions.; putative" misc_difference replace(15,"a") /citation=[1] /note="one of five known differences between the two copies of the 23S rRNA genes of the P. purpurea chloroplast genome" misc_difference replace(511,"c") /citation=[1] /note="one of five differences between the two copies of the 23S rRNA genes of the P. purpurea chloroplast genome" misc_difference replace(546,"g") /citation=[1] /note="one of five differences between the two copies of the 23S rRNA genes of the P. purpurea chloroplast genome" misc_difference replace(675,"c") /citation=[1] /note="one of five differences between the two copies of the 23S rRNA genes of the P. purpurea chloroplast genome" misc_difference replace(677,"c") /citation=[1] /note="one of five differences between the two copies of the 23S rRNA genes of the P. purpurea chloroplast genome" misc_difference replace(724,"g") /citation=[1] /note="one of three differences between the two copies of the 23S -5S spacer region of the P. purpurea chloroplast genome" misc_difference replace(728,"g") /citation=[1] /note="one of three differences between the two copies of the 23S -5S spacer region of the P. purpurea chloroplast genome" misc_difference replace(730,"a") /citation=[1] /note="one of three differences between the two copies of the 23S -5S spacer region of the P. purpurea chloroplast genome" rRNA 750..870 /product="5S ribosomal RNA" /gene="5S rRNA" /citation=[1] /note="There are four differences between the two copies of the 5SrRNA genes in the P. purpurea chloroplast genome.; putative" misc_difference replace(786,"t") /citation=[1] /note="one of four differences between the two copies of the 5S rRNA genes of the P. purpurea chloroplast genome" misc_difference replace(810,"t") /citation=[1] /note="one of four differences between the two copies of the 5S rRNA genes of the P. purpurea chloroplast genome" misc_difference replace(842,"c") /citation=[1] /note="one of four differences between the two copies of the 5S rRNA genes of the P. purpurea chloroplast genome" misc_difference replace(849,"a") /citation=[1] /note="one of four differences between the two copies of the 5S rRNA genes of the P. purpurea chloroplast genome" terminator 884..973 /citation=[1] /note="putative" source 1..1064 /organism="Porphyra purpurea" /chloroplast BASE COUNT 323 a 203 c 270 g 268 t ORIGIN BASE COUNT 195 a 151 c 209 g 158 t 4526 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 61 ~~~~|~~~~~ ~~|~~|~~~~ ~~~~~~~~|~ ~~~(~~~~~~ ~~~~~~~)~| ~~~~~~~~~~ 121 ~~~~~~|~~~ ~~(~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 181 ~~~~~|~~~~ ~~~~~~~(~~ ~~)~~~|~~~ ~~~~(~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 241 ~~~~~~~~(~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~|~~ 301 (~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~|~~ ~~~~~~~~~~ 361 ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~)~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~|~(~~~ )~~~~~(~~~ 841 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~------- 1321 ------(~~~ ~~~~~~)~~~ ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 1381 ~~|~)~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 1441 ~~~~~)~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ ~~(~~~~~~) ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~( ~~~~~~~~)~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~)~~~~ ~~~~|~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~|~~~ ~~~~~|~~~~ ~~|-~~~~~~ 1801 ~~~~~~~~~~ ~~~~~|~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|-~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 1981 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~|~~~(~~ ~)~|~~~~~~ (~~~~~~)~~ 2101 |~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ 2161 |~~~~~~~~~ |~~~~|~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~(~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ 2581 ~~~~~~(~~~ ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 2641 ~)~~|~~~~~ ~~~~~~~~|~ ~~|~~~~~~~ ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ ~|~~|~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~|~ ~~~~~~~(-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 3121 ~~~~~~~~~) ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~(~-~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~|~~~ ~~~~~~~~~~ ~~(~~~~~~) 3601 ~~|~~~~~~~ ~~-~~~~~~~ (~~~~~~)~~ ~~~~~~~~~~ ~~||~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ (-~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~(~~~~)~ ~~~~~~~~~~ 3781 ~~~~|~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~|~~~ ~~~~(~~~~) ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 3901 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~|~~~~~~~~ ~|~~~|~~~~ ~~(~~~~~~~ )~~~~~~|~( ~~~)~~~~~~ 4021 ~~~~~~~~~~ |~~~~~~(~~ ~~~)~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~| ~~~~~~~~~~ ~(~~~~~~~~ ~)~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ |~~~~~~~~~ ~~|~~~~-~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~GAAUUCUAA -CCU-UGUAA 4321 GCCG(----- ---uu-auc) -CGGCCAAGG AACAGUUCCA GGUAGGCAGU UUGACUG(GG 4381 G)CGGUC|GC C-UCC(UAAA AAGUAAC)GG AGGC|G|U|G CAAAGGUUCU C|UCAGGCUG 4441 G--(UCGGAA A--)--UCAG UCGUA---GA |GU(G|UAAA G)GC-AUAA- --GAGAG--C 4501 UUGACUGUGA GAC(CUACAA )GUCGAACAG AGAC(GAAA) GUCGGC|CUU AGUGAUCCGG 4561 CGGUA-CCG( AGUGGA)AGG |GCCGUCGCU CAAC|GGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUGA UCUCCCCCAA GA(GUUCACA )UCGACGGGG AGGUUUGGCA CCUCGAUGUC 4681 |GGCU|C|AU CGC|AUCC|U GGGGCG(GUA GUA)CGUC-C C-AAGGGU|U GGGC(UGUUC 4741 )GCCCAUG-A AAGCGGUACG CGAGCUGGGU UCAGAAC|GU C(GUGA)GAC AGUUCGGUCC 4801 AUAUCC|GGU GUAGG|CGUU AGAGUAUU|G A|GAGGA-UU UCUCCU(UAG UAC(GAGA)G 4861 GA-CC)GGGA GAG|-ACGCA CCUCUGGUGU ACCAGU|UAU UGU(GC-CA) ACGGUAAACG 4921 CUGGGUAGCU AAGUACGGA- AAGG-AUAAC CGCU(GAAAG CAUCUA)AGU GGGAAGCCAA 4981 CCUC|AAGAU GAGUACUCU| CA|UUGU--( -uuuaa)--A CAA-GU-AAG G|UC|ACGGC 5041 (AAGACUA)G CCGU-UA--- ---------- ---------- -----UAUAG |GUAUC|AAG 5101 UAUAAGUGCA (GUAA)UGUA U|UAAGCUG| A|GAUAUACU AACAGACCGA ---GG|ACUU 5161 GACUAA---| --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS chl.P.pu.3 5239 bp RNA RNA 25-APR-1996 DEFINITION Chloroplast Porphyra purpurea.; . ACCESSION U38804 KEYWORDS . SOURCE Chloroplast Porphyra purpurea. ORGANISM Chloroplast Porphyra purpurea. REFERENCE 1 (bases 1 to 191028) AUTHORS Reith,M.E. and Munholland,J. TITLE chloroplast genome Complete nucleotide sequence of the Porphyra purpurea JOURNAL Plant Mol. Biol. Rep. 13 (4), 333-335 (1995) STANDARD No information REFERENCE 2 (bases 1 to 191028) AUTHORS Reith,M.E. TITLE Direct Submission JOURNAL Submitted (17-OCT-1995) Michael E. Reith, Marine Biology Section, NRC Institute for Marine Biosciences, 1411 Oxford Street, Halifax, Nova Scotia B3H 3Z1, Canada STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: U38804 (149541..152428) portion BASE COUNT 869 a 567 c 827 g 625 t 2351 others ORIGIN 1 |--------- ---------- --aguucaag cgaa---UAA GAGCUUACGG CGGAUA|CCU 61 -UGG|CAUUC AG|AA|GCGA UGAAG-GG|C GUG(GCUA-- ----CC-)G| ACG-AAACGC 121 UCCGGG|GAG CU(------- -----G-GA- AGUA------ -----)AGCU UAG-AUCCGG 181 AGGUC|CCCG AA-UGAG(GA AA)CUC|--- ----(----- --ua--uau) --------AC 241 UACUUGUU(G A-AUUUA--U A)GAC-AAG- ---A-AAGAG C-aaAC|CUG GCGAAUU|GA 301 (AACA)UCUU AGU-AGCCAG AGGAAAAGAA AGC(AAAA-- )GCG-AU|UC CCUUAGUAGC 361 -(GGCGA)GC GA-AGCGGGA -acagccuaa acugaucaga ---------- (uaag---)- 421 ---------u ccgaucaggg uugu-gggac agcaacga-- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---c-uaaga 781 uuaauaagag uu-aaaaGAA uuaguu(g-- gaau)a-cua -agc|c(gua )gauGG(-UG 841 AAAGC)-CCA GUAuuugaaa acuuaaauua -cuuaag--- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------c uguauccc-- -AAGUAGCAC GGGG(CACGU 1141 GAAA)UCCCG UGUGAAUCAG CGAG(GACCA C)CUCGUAAG GCUAA-AUAU UACUGAAUGA 1201 CCGAUAGUGA AAUAGUACC( GUGA)GGGAA AGGUGAAAA- GAACCCC(gg -ga-)GGGGA 1261 GUGAAAUAGA ACAUGAACCC GU---AAGCU UACAAGCAGA GGGAGGAC-g ---------- 1321 ------(--a cucau-)--- ---------- ----cgu--U -UGACCUCGU GCAU(GUUGA 1381 AG|A)AUGA| GCCGGCGACU UAUAAGUAGU GGC------- --AGGUU-AA GG--(---ua 1441 aagaa)uaCC -GAAGCCAAA -GU(-GAAA) GCG----AGC UU(GAA-UA) GAGCGu---- 1501 ---------- ---------- ---------- -----ugGUC ACUAUUUAUA GACCCGAACC 1561 CGGAUGAUCU AGCCAUGGC| CAGGGUGAAG CUUAGG(UAA C)ACUAAGUG GAGGUCCGAG 1621 CCGACUAAU( GUUGAAAA)A UUAG|CGGAU GAGUUGUGGC UAG-GGGU(G AAAU)GCCAA 1681 UCGA-AUCCG GAGCUAGCUG GUUCUCCCCG -AAAUGUGU- (UGAG)-GCG CAGC|G-GUU 1741 GAUg------ ---------- ---------c |-uua-|aac -UUAG|GGGU AA|-AGC-AC 1801 UGU-UUCGGU GC-GG|GCUG C(GAGA-)GC GGUACCA-AA UCGAG-GCAA ACUCUGAAUA 1861 |CUAAG-U-- ---------- ---------- ---gug---- ua|-gucA-A C-UAGUGAGA 1921 CAGUGGGG(G AUAAG)CUUC AU--UGUCAA GAGGG(AAAC AG)CCCAGAC CACCAGCUAA 1981 GGC|CCCA-A AAUA-AUUA- CUAAGUG--G CAAAGGAGGU -GGGAAUGCA UA---GACAA 2041 CCAGGAGGUU UGC(UUAGAA GCA)GCAAU- CCU|--U(UA A)A|GAGUGC (GUAAUA)GC 2101 |UCACUGGU- CAAGUGAUCC UGC|GCCGAA AAUG-AACGG GACU-----A AGUAA-UU|U 2161 |GCCGAAGCU |GUGG|gaug u-------(u uau------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ------)--- -----acauc GGUAGGGGAG |CGUU-CUGU AUUAGGU-U- GAAGCAUUA- 2521 GC(GAAA)GC G-GGUGUGG| ACAAAACAGA AGCGAGAAUG UCGGC|UUAA GUAGCGAAAA 2581 CAUUGG(UGA GAA-U)CCAA UG|CCCCGAA AACCUA-AGG AUUCCUC-CG GAAGG(UUCG 2641 U)CC|GCGGA GGGUGAGU|C AG|GGCCUAA GGCGAGGCU- --(-GAAA)- --AGCGUAGU 2701 CG-AUGG-AU AACAGG(UUA AUAUU)CCUG U|AC|ca-u- -uuauu-guu ---------- 2761 ---------- ---------- ---------- gauau----- cgagggacgg ag--aaggcu 2821 a-agccag|c -cg-gau(-- ---guuggu- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- --------)- uaccgg-|uu ua-------- --------ag 3061 uauuuaaggu g--------- ---------- ---------- -----uagau a-agu-ag(u 3121 g-aa---a-) au-|a--cuu uga------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ------gcu- 3301 aagguaca-a aua|ca--|- ---------- ---------- ---------- ---------- 3361 aagugc(--u aa-g--)gca cua------- ---------- ---------- --------aa 3421 guggcu--aa uguc-aua-| cuuccuagaa aagcucgaaa uaucuu---- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- aaa-caau-a aaug|c|CUG UACCCUAAA- CC(GACACA) 3601 GG|---UAG- GU-AA-GUA- (-GAGUA)-U ACUAA-GG-G GC||GCGAGA UAACUCUCUC 3661 UAAGGAA-CU CGGCAAAAUA GCCCCGUAAC (UUCG)GGAG AAGGGGU|AC CCU------- 3721 ---------- (-ucaaa)-- ---------- ------AGGG U|U(GC-A)A UAACCAGGCC 3781 CAAG|CGACU GU(UUAUCAA AA)ACACAGG UCUCCG|CUA AGUC(GUAA) GACAAUGUAU 3841 GGGGGCUGAC GCC-UGCCCA GU|GCCGGAA GGUUAAGGAA GCUGGUUAGC U-------(u 3901 -uua)----- ---------- ---------- ---------- ---------G CGA-AGCUAG 3961 CAACUGAAGC C|CCGGUGAA C|GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC 4021 GAAAUUCCUU |GUCGGG(UA AGU)UCCGAC |CCGCACGAA AGGCGUAACG A-UUUGGGCA 4081 CUGUCUCGGA GAGAGGCUCG |GCGAAAUA| GACUUGU-CU G(UG-AAGAU G)CGGACUAC 4141 CUGCACCUGG ACAG-AAAGA CCCUAUGA|A GCUUUACUGU |AGCUUGGAA UU|GGGU-UU 4201 GGGCUUUUCU UGCGCAG-GA UAGGUGGGAG GCUAA-GAUA AUAAUCU(UG CG)GGAUUAU 4261 UGGAGCCAAU -GGUGAGAUA -CCACU|CU- AGAAAAGCU- AGAAUUCUAA -CCU-UGAAA 4321 GCCG(----- ---uu-auc) -CGGCCAAGG AACAGUUCCA GGUAGGCAGU UUGACUG(GG 4381 G)CGGUC|GC C-UCC(UAAA AAGUAAC)GG AGGC|G|U|G CAAAGGUUCU C|UCAGGCUG 4441 G--(UCGGAA A--)--UCAG UCGUA---GA |GU(G|UAAA G)GC-AUAA- --GAGAG--C 4501 UUGACUGUGA GAC(CUACAA )GUCGAACAG AGAC(GAAA) GUCGGC|CUU AGUGAUCCGG 4561 CGGUA-CCG( AGUGGA)AGG |GCCGUCGCU CAAC|GGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUGA UCUCCCCCAA GA(GUUCACA )UCGACGGGG AGGUUUGGCA CCUCGAUGUC 4681 |GGCU|C|AU CGC|AUCC|U GGGGCG(GUA GUA)CGUC-C C-AAGGGU|U GGGC(UGUUC 4741 )GCCCAUG-A AAGCGGUACG CGAGCUGGGU UCAGAAC|GU C(GUGA)GAC AGUUCGGUCC 4801 AUAUCC|GGU GUAGG|CGUU AGAGUAUU|G A|GAGGA-UU UCUCCU(UAG UAC(GAGA)G 4861 GA-CC)GGGA GAG|-ACGCA CCUCUGGUGU ACCAGU|UAU CGU(GC-CA) ACGGUAAACG 4921 CUGGGUAGCU AAGUACGGG- AAGG-AUAAC CGCU(GAAAG CAUCUA)AGU GGGAAGCCAA 4981 CCUC|AAGAU GAGUACUCU| CA|UUGU--( -uuuaa)--a caa-gU-AAG G|UC|ACGGC 5041 (AAGACUA)G CCGU-UA--- ---------- ---------- -----UAUAG |GUAUC|AAG 5101 UAUAAGUGCA (GUAA)UGUA C|UCAGCUG| A|GAUAUACU AACAGACCGA ---GG|ACUU 5161 GACUAA---| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS chl.P.pu.4 5239 bp RNA RNA 25-APR-1996 DEFINITION Chloroplast Porphyra purpurea.; . ACCESSION U38804 KEYWORDS . SOURCE Chloroplast Porphyra purpurea. ORGANISM Chloroplast Porphyra purpurea. REFERENCE 1 (bases 1 to 191028) AUTHORS Reith,M.E. and Munholland,J. TITLE chloroplast genome Complete nucleotide sequence of the Porphyra purpurea JOURNAL Plant Mol. Biol. Rep. 13 (4), 333-335 (1995) STANDARD No information REFERENCE 2 (bases 1 to 191028) AUTHORS Reith,M.E. TITLE Direct Submission JOURNAL Submitted (17-OCT-1995) Michael E. Reith, Marine Biology Section, NRC Institute for Marine Biosciences, 1411 Oxford Street, Halifax, Nova Scotia B3H 3Z1, Canada STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: U38804 (187984..190871)portion BASE COUNT 874 a 565 c 822 g 627 t 2351 others ORIGIN 1 |--------- ---------- --aguucaag cgaa---UAA GAGCUUACGG CGGAUA|CCU 61 -UGG|CAUUC AG|AA|GCGA UGAAG-GG|C GUG(GCUA-- ----CC-)G| ACG-AAACGC 121 UCCGGG|GAG CU(------- -----G-GA- AGUA------ -----)AGCU UAG-AUCCGG 181 AGGUC|CCCG AA-UGAG(GA AA)CUC|--- ----(----- --ua--uau) --------AC 241 UACUUGUU(G A-AUUUA--U A)GAC-AAG- ---A-AAGAG C-aaAC|CUG GCGAAUU|GA 301 (AACA)UCUU AGU-AGCCAG AGGAAAAGAA AGC(AAAA-- )GCG-AU|UC CCUUAGUAGC 361 -(GGCGA)GC GA-AGCGGGA -acagccuaa acugaucaga ---------- (uacg---)- 421 ---------u ccgaucaggg uugu-gggac agcaacga-- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---c-uaaga 781 uuaauaagag uu-aaaaGAA uuaguu(g-- gaau)g-cua -agc|c(aua )gauGG(-UG 841 AAAGC)-CCA GUAuuugaaa acuuaaauua -cuuaag--- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------c uguauccc-- -AAGUAGCAC GGGG(CACGU 1141 GAAA)UCCCG UGUGAAUCAG CGAG(GACCA C)CUCGCAAG GCUAA-AUAU UACUGAAUGA 1201 CCGAUAGUGA AAUAGUACC( GUGA)GGGAA AGGUGAAAA- GAACCCC(gg -ga-)GGGGA 1261 GUGAAAUAGA ACAUGAACCC GU---AAGCU UACAAGCAGA GGGAGGAC-g ---------- 1321 ------(--a cuuau-)--- ---------- ----cgu--U -UGACCUUGU GCAU(GUUGA 1381 AG|A)AUGA| GCCGGCGACU UAUAAGUAGU GGC------- --AGGUU-AA GG--(---ua 1441 aagaa)uaCC -GAAGCCAAA -GU(-GAAA) GCG----AGC UU(GAA-UA) GAGCGu---- 1501 ---------- ---------- ---------- -----ugGUC ACUAUUUAUA GACCCGAACC 1561 CGGAUGAUCU AGCCAUGGC| CAGGGUGAAG CUUAGG(UAA C)ACUAAGUG GAGGUCCGAA 1621 CCGACUAAU( GUUGAAAA)A UUAG|CGGAU GAGUUGUGGC UAG-GGGU(G AAAU)GCCAA 1681 UCGA-AUCCG GAGCUAGCUG GUUCUCCCCG -AAAUGUGU- (UGAG)-GCG CAGC|G-GUU 1741 GAUg------ ---------- ---------c |-uua-|aac -UUAG|GGGU AA|-AGC-AC 1801 UGU-UUCGGU GC-GG|GCUG C(GAGA-)GC GGUACCA-AA UCGAG-GCAA ACUCUGAAUA 1861 |CUAAG-U-- ---------- ---------- ---gug---- ua|-gucA-A C-UAGUGAGA 1921 CAGUGGGG(G AUAAG)CUUC AU--UGUCAA GAGGG(AAAC AG)CCCAGAC CACCAGCUAA 1981 GGC|CCCA-A AAUA-AUUA- CUAAGUG--G CAAAGGAGGU -GGGAAUGCA UA---GACAA 2041 CCAGGAGGUU UGC(UUAGAA GCA)GCAAU- CCU|--U(UA A)A|GAGUGC (GUAAUA)GC 2101 |UCACUGGU- CAAGUGAUCC UGC|GCCGAA AAUG-AACGG GACU-----A AGUAA-UU|U 2161 |GCCGAAGCU |GUGG|gaug u-------(u uau------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ------)--- -----acauc GGUAGGGGAG |CGUU-CUGU AUUAGGU-U- GAAGCAUUA- 2521 GC(GAAA)GC G-GGUGUGG| ACAAAACAGA AGCGAGAAUG UCGGC|UUAA GUAGCGAAAA 2581 CAUUGG(UGA GAA-U)CCAA UG|CCCCGAA AACCUA-AGG AUUCCUC-CG GAAGG(UUCG 2641 U)CC|GCGGA GGGUGAGU|C AG|GGCCUAA GGCGAGGCU- --(-GAAA)- --AGCGUAGU 2701 CG-AUGG-AU AACAGG(UUA AUAUU)CCUG U|AC|ca-u- -uuauu-guu ---------- 2761 ---------- ---------- ---------- gauau----- cgaggggcgg ag--aaggcu 2821 a-agccag|c -cg-gau(-- ---guuggu- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- --------)- uaccgg-|uu ua-------- --------ag 3061 uauuuaaggu g--------- ---------- ---------- -----uagau a-agu-ag(u 3121 g-aa---a-) au-|a--cuu uga------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ------gcu- 3301 aagguaca-a aua|ca--|- ---------- ---------- ---------- ---------- 3361 aagugc(--u aa-g--)gca cua------- ---------- ---------- --------aa 3421 guggcu--aa uguc-aua-| cuuccuagaa aagcucgaaa uaucuu---- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- aaa-caau-a aaua|c|CUG UACCCUAAA- CC(GACACA) 3601 GG|---UAG- GU-AA-GUA- (-GAGUA)-U ACUAA-GG-G GC||GCGAGA UAACUCUCUC 3661 UAAGGAA-CU CGGCAAAAUA ACCCCGUAAC (UUCG)GGAG AAGGGGU|AC CCU------- 3721 ---------- (-ucaaa)-- ---------- ------AGGA U|U(GC-A)A CAACCAGGCC 3781 CAAG|CGACU GU(UUAUCAA AA)ACACAGG UCUCCG|CUA AGUC(GUAA) GACAAUGUAU 3841 GGGGGCUGAC GCC-UGCCCA GU|GCCGGAA GGUUAAAGAA GCUGGUUAGC U-------(u 3901 -uua)----- ---------- ---------- ---------- ---------G CGA-AGCUAG 3961 CAACUGAAGC C|CCGGUGAA C|GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC 4021 GAAAUUCCUU |GUCGGG(UA AGU)UCCGAC |CAGCACGAA AGGCGUAACG A-UUUGGGCA 4081 CUGUCUCGGA GAGAGGCUCG |GCGAAAUA| GACUUGU-CU G(UG-AAGAU G)CGGACUAC 4141 CUGCACCUGG ACAG-AAAGA CCCUAUGA|A GCUUUACUGU |AGCUUGGAA UU|GGGU-UU 4201 GGGCUUUUCU UGCGCAG-GA UAGGUGGGAG GCUAA-GAUA AUAAUCU(UG CG)GGAUUAU 4261 UGGAGCCAAC -GGUGAGAUA -CCACU|CU- AGAAAAGCU- AGAAUUCUAA -CCU-UGUAA 4321 GCCG(----- ---uu-auc) -CGGCCAAGG AACAGUUCCA GGUAGGCAGU UUGACUG(GG 4381 G)CGGUC|GC C-UCC(UAAA AAGUAAC)GG AGGC|G|U|G CAAAGGUUCU C|UCAGGCUG 4441 G--(UCGGAA A--)--UCAG UCGUA---GA |GU(G|UAAA G)GC-AUAA- --GAGAG--C 4501 UUGACUGUGA GAC(CUACAA )GUCGAACAG AGAC(GAAA) GUCGGC|CUU AGUGAUCCGG 4561 CGGUA-CCG( AGUGGA)AGG |GCCGUCGCU CAAC|GGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUGA UCUCCCCCAA GA(GUUCACA )UCGACGGGG AGGUUUGGCA CCUCGAUGUC 4681 |GGCU|C|AU CGC|AUCC|U GGGGCG(GUA GUA)CGUC-C C-AAGGGU|U GGGC(UGUUC 4741 )GCCCAUG-A AAGCGGUACG CGAGCUGGGU UCAGAAC|GU C(GUGA)GAC AGUUCGGUCC 4801 AUAUCC|GGU GUAGG|CGUU AGAGUAUU|G A|GAGGA-UU UCUCCU(UAG UAC(GAGA)G 4861 GA-CC)GGGA GAG|-ACGCA CCUCUGGUGU ACCAGU|UAU UGU(GC-CA) ACGGUAAACG 4921 CUGGGUAGCU AAGUACGGA- AAGG-AUAAC CGCU(GAAAG CAUCUA)AGU GGGAAGCCAA 4981 CCUC|AAGAU GAGUACUCU| CA|UUGU--( -uuuaa)--a caa-gU-AAG G|UC|ACGGC 5041 (AAGACUA)G CCGU-UA--- ---------- ---------- -----UAUAG |GUAUC|AAG 5101 UAUAAGUGCA (GUAA)UGUA U|UAAGCUG| A|GAUAUACU AACAGACCGA ---GG|ACUU 5161 GACUAA---| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS chl.C.cald 5239 bp RNA RNA 07-OCT-1997 DEFINITION Chloroplast Cyanidium caldarium.; . ACCESSION AF022186 KEYWORDS . SOURCE Chloroplast Cyanidium caldarium. ORGANISM Chloroplast Cyanidium caldarium. REFERENCE 1 (bases 1 to 46880) AUTHORS Gloeckner,G., Rosenthal,A. and Valentin,K. TITLE genome Organisation of 46 kb of the Cyanidium caldarium RK1 plastid JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 46880) AUTHORS Gloeckner,G., Rosenthal,A. and Valentin,K. TITLE Direct Submission JOURNAL Submitted (02-SEP-1997) Department of genome analysis, IMB Jena, Beutenbergstr. 11, Jena 07745, Germany STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: AF022186 BASE COUNT 947 a 552 c 764 g 657 t 2319 others ORIGIN 1 |--------- ---------- ---AGUUAAG CGAAa--gua aaguUUACGG UGGAUA|CCU 61 -UGG|UGUUU AG|AA|GCGA UGAAG-GG|C GUG(GCUA-- ----CC-)A| ACG-AAAUGC 121 UUCGGG|aag cu(------- -----g-ga- agca------ -----)agCU UUG-AUCCGG 181 AGAAU|CCCG AA-UGAG(GA AA)CUC|--- ----(----- ---uuuaau) --------ac 241 uucuuuca(a a--uaca--u a)aga-aag- ---A-AAGAG C-aaAC|CUA GUGAACU|GA 301 (AACA)UCUU AGU-AACUAG AGGAAAAGAA AGC(AAAA-- )GCG-AU|UC CCCCAGUAGU 361 -(GGCGA)GC GA-AAAGGGA -acagccuaa accguug--- ---------- (uuuua--)- 421 ---------- --caacgggg uaau-ggga- ---caacaca aac------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- -----aaaa- 781 -uaaacuaga uu-aguuGAA uugg-u(u-g gaau)c-cca -agc|g(aua )cAAGG(-UG 841 ACAGC)-CCU GUaaacgaaa aucaauuuua -uuuu----- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ------uagu ugaauccc-- -GAGUAGUAU GGGG(CACGA 1141 GAAA)UCCCG UAUGAAUUCG CGAG(GACCA C)CUCGUAAG GCUAA-AUAU UCCUAAACAA 1201 CCGAUAGUGA AACAGUACC( GUGA)GGGAA AGGUGAAAA- GAACCUC(gg -ga-)GAGGA 1261 GUGAAAUAGA ACAUGAAACC GU---AAACU UACAAGCAGU GGGAGGAC-g ---------- 1321 ------(--a cuuaa-)--- ---------- ----cgu--C -UGACCUCGU GCCU(GUUGA 1381 AG|A)AUGA| GCCGGCGACU UAUGUGCAGU GGC------- --AGGUU-AA GGca(----- 1441 aagaa)ugCC -GAAGCCAUA -GU(-GAAA) GCG----AGC UU(AAA-A-) AGGCAU---- 1501 ---------- ---------- ---------- -----aagUC ACUGUGCAUA GACCCGAACC 1561 CGAAUGAUCU AACCAUGAC| CAGGGUGAAG CUUAGG(UAA C)ACUAAGUG GAGGUCCGAA 1621 CCGACUAAU( GUUGAAAA)A UUAG|CGGAU GAGUUGUGGU UAG-UGGU(G AAAU)GCCAA 1681 UCGA-AUUCG GAGCUAGCUG GUUCUCCCCG -AAAUGUGU- (UGAG)-GCA CAGC|a-guc 1741 aaaa------ ---------- --------ua |-agu-|gug -UUAG|GGGU AA|-AGC-AC 1801 UGU-UUUGUU GA-GG|GCUA U(GAGA-)AU AGUACCA-AA UCAAG-GCAA ACUCUGAAUA 1861 |CUAAA-U-- ---------- ---------- ---acau--- aa|-uuug-a c-uAGUCAGA 1921 CAGUGGGG(G AUAAG)CUCC AU--UGUCAA GAGGG(AAAC AG)CCCAGAU CACUAGCUAA 1981 GGC|CCCU-A AAUA-GUUG- CUAAGUG--U AAAAGGAAGU -GAGAACGCA UA---GACAA 2041 CCAGGAGGUU CGC(UUAGAA GCA)GCAAU- CCU|--U(UU A)A|AAGUGC (GUAAUA)GC 2101 |UUACUGGU- CAAGUGAUCU UGC|ACCGAA AAUU-UUAGG GACU-----A AGCAA-CU|U 2161 |GCCGAAGCU |GUGa|gaug uuu-----(g uauuuuggcu u(uuaau)aa gcaaaaaaua 2221 ua-------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ------)--- ---aaacauc GGUAGGGGAG |CGUU-CCGU AGuaguu-u- GAAGCGUUA- 2521 GC(GAAA)gu g-aacgugg| acaaAUCGGA AGUGAGAAUG UCGGC|UUAA GUAACGAAAA 2581 CAUUGG(UGA GAA-U)CCAA UG|CCCCGAA AAUCUA-AGG UUUCCUU-UG GAAGG(UUCG 2641 U)CC|GCAAA GGGUAAGU|C AG|AGCCUAA GGCAAGGCU- --(-GAAA)- --AGCGUAGC 2701 UA-AUGG-AC AACGGG(UUA AUAUU)CCCG U|AC|ca-c- -uuauu-auu ---------- 2761 ---------- ---------- ---------- ggcag----- ugggggacaa ag--aaggcu 2821 a-gauugu|c -cg-gaa(-- ---guuggu- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- --------)- uaccgg-|uu ua-------- --------aa 3061 uguuauaagc g--------- ---------- ---------- -----augaa a-gau-gg(a 3121 g-aa---a-) ac-|a--ucu aga------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ------gca- 3301 aaagcaug-a aua|caa-|- ---------- ---------- ---------- ---------- 3361 aguguc(--u uu----)gac acua------ ---------- ---------- --------aa 3421 gcaauu--ca cgcc-aua-| cuuucaagaa aagcccuaau agcuaa--gu aaa------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- aaa-ugau-a agug|u|CUG UACCUUAAA- CC(GACACA) 3601 GG|---UAG- AU-AA-GUA- (-GAGAA)-U ACUAA-GG-G GC||GCGAGA UAACUCUCUC 3661 UAAGGAA-CU CGGCAAAAUA GCCUCGUAAC (UUCG)GAAA AAGAGGU|GC CUUu------ 3721 ---------- (--cuu-)-- ---------- -----aAAGG C|U(GC-A)A UAGCAAAACU 3781 CAAA|CGACU GU(UUAUCAA AA)ACACAGG UCUCCG|CUA AGUC(GUAA) GACGAUGUAU 3841 GGGGGCUGAC GCC-UGCCCA GU|GCCGGAA GGUUAAAGAA GUUGGUCAGC U-------(u 3901 -uac)----- ---------- ---------- ---------- --------AG CAA-AGCUAG 3961 CAACCGAAGC C|CCGGUGAA C|GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC 4021 GAAAUUCCUU |GUCGGG(UA AGU)UCCGAC |CCGCACGAA UGGCGUAACG A-UUUGAGUG 4081 CUGUCUCAGA GAGAGACUCG |GUGAAAUA| GACUUGU-CC G(UG-AAGAU G)CGGACUAC 4141 CUGCACCUGG ACAG-AAAGA CCCUAUGA|A GCUUUACUGU |AGCUUGAGA UU|GAAU-UU 4201 GAGUUUUUUC UGCGCAG-AA UAAGUGGGAG ACAAA-GAGA CCGUUUU(UG UG)GAAGCGG 4261 AGGAGUCGCA -AGUGAGAUA -CCACU|CU- UAAAAAACU- AAAAUUCUAA -CCU-UA--A 4321 GUCA(----- aucau-uac) -UGGCUAAGG AACAUUCUCU GGUGGGCAGU UUGACUG(GG 4381 G)CGGUC|GC C-UCC(UAAA AGGUAAC)GG AGGC|G|C|G CAAAGGUUUC C|UCAAACUG 4441 G--(UCAGAA A--)--UCAG UUGUA---GA |GU(G|CAAA G)GC-AUAA- --GGAAG--C 4501 UUAACUGUAA GAC(UUACAA )GUCAAGCAG AGAC(GAAA) GUCGGC|CUU AGUGAUCCGA 4561 CGGCC-CUG( AGUGGA)AAG |ACCGUCGCU CAAC|GGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUGA UCUCCCCCAA GA(GUUCACA )UCGACGGGG AGGUUUGGCA CCUCGAUGUC 4681 |GGCU|C|AU CGC|AACC|U GGGGCG(GAA GUA)CGUC-C C-AAGGGU|U GGGC(UGUUC 4741 )GCCCAUA-A AAGCGGUACG UGAGCUGGGU UCAGAAC|GU C(GUGA)GAC AGUUCGGUCC 4801 AUAUCC|GGU GUAGG|CGUA AGAGCAUU|G A|GAGGC-GC UCUUUC(UAG UAC(GAGA)G 4861 GA-CC)GAAA GAG|-ACACA CCGCUGGUGU ACCAGU|UAU UAU(GC-CA) AUAGUAAACG 4921 CUGGGUAGCU AUGUGUGGA- AAAG-AUAAC CGCU(GAAAG CAUCUA)AGU GGGAAGCUAA 4981 CCUC|AAGAU GAGUGCUCU| GC|cuu---( -uuga-)--- agg--U-AAG G|UC|ACAGU 5041 (UAGACUA)A CUGU-UU--- ---------- ---------- -----AAUAG |GCGUU|AAG 5101 UGUAAGUGCA (GCAA)UGCA U|UCAGCUA| A|GGCGUACU AAUAGACCGA ---AA|GCUU 5161 AAUAAUAA-| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS chl.P.palm 5239 bp RNA RNA 11-JAN-191 DEFINITION Chloroplast Palmaria palmata. ACCESSION No information KEYWORDS No information. SOURCE Chloroplast Palmaria palmata. ORGANISM Chloroplast Palmaria palmata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: Z18289 ID PPC16SRNA standard; RNA; PLN; 4870 BP. XX AC Z18289; XX DT 18-JAN-1993 (Rel. 34, Created) DT 18-JAN-1993 (Rel. 34, Last updated, Version 2) XX DE Palmaria palmata Chloroplast for 16SrRNA gene. XX KW 16S ribosomal RNA. XX OS Palmaria palmata OC Eukaryota; Plantae; Thallobionta; Rhodophyta; Rhodophyceae; OC Florideophycideae; Palmariales; Palmariaceae. XX RN [1] RP 1-4870 RA Singh R.K.; RT "The Organization and Primary Structure of the Plastid rRNA Operon RT from the Red Alga Palmaria palmata"; RL Unpublished. XX RN [2] RP 1-4870 RA Singh R.K.; RT ; RL Submitted (09-NOV-1992) on tape to the EMBL Data Library by: RL RAMA K SINGH Ph.D., MARINE BIOSCIENCES, INSTITUTE FOR MARINE RL BIOSCIENCES, NATIONAL RESEARCH COUNCIL, 1411 OXFORD STREET, RL HALIFAX, NOVA SCOTIA, B3H 3Z1, CANADA XX CC *source: haplotype=haploid; CC *source: tissue=thallus; CC *source: is_germline=N; XX FH Key Location/Qualifiers FH FT rRNA 1..1486 FT /gene="16SrRNA" FT tRNA 1545..1618 FT /gene="tRNAIle" FT tRNA 1624..1696 FT /gene="tRNAAla" FT rRNA 1743..4627 FT /gene="23SrRNA" FT rRNA 4651..4771 FT /gene="5SrRNA" XX SQ Sequence 4870 BP; 1419 A; 1003 C; 1343 G; 1105 T; 0 other; BASE COUNT 868 a 570 c 809 g 638 t 2354 others ORIGIN 1 |--------- ---------- --aauucaag auaa---UAA GAGCUUACGG UGAAUA|CCU 61 -UGG|CAUUC AG|AA|GCGA UGAAG-GG|C GUG(GCUA-- ----CC-)G| ACG-AAACAC 121 UUCGAC|GAG CU(------- -----G-GA- AGCA------ -----)AGCU UUG-ACUCGG 181 AGAUA|CCCG AA-UGAG(GA AA)CUC|--- ----(----- --uu--cau) --------AC 241 UACCUGUU(G A-AUCUA--U A)GAC-AGG- ---A-AAGAG C-aaAC|CUG GCGAACU|GA 301 (AACA)UCUU AGU-AACCAG AGGAAAAUAA AGC(AAAA-- )GCG-AU|UC CCUUAGUAGC 361 -(GGCGA)GC GA-AAUGGGA -acagccuaa accauaaaaa ---------- (caug---)- 421 ---------u uuuuaugggg ucgu-gggau agcaa----- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --ucaaaaga 781 uuagucaagg uu-aaguAAA acauuu(g-- gaau)a-aug -uau|c(aua )gaAGG(-UG 841 AUAAU)-CCU GUAacugaaa accaaaacua -cuuuag--- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------c uauauccc-- -GAGUAGCAU GGGG(CACGU 1141 GAAA)UCCCG UGUGAAUCAG CGAG(GACCA C)CUCGUAAG GCUAA-AUAU UCCUGAAUGA 1201 CCGAUAGUGA AACAGUACC( GCGA)UUUAA AGGUGAAAA- GAACCCC(gg -ga-)GGGGA 1261 GUGAAAUAGA ACAUGAAACC GU---AAGCU UACAAGCAGU GGGAGGAC-g ---------- 1321 ------(--a cuuaa-)--- ---------- ----cgu--C -UGACCUCGU GCAU(GUUGA 1381 AG|A)AUGA| GCCGGCGACU UGUAUGCAGU GGC------- --AGGUU-AA GGcg(---ua 1441 aagaa)uaCC -GGAGCCAUA -GU(-GAAA) GCG----AGC UU(GAU-AA) GAGCGu---- 1501 ---------- ---------- ---------- -----ucGUC ACUGUUUACA GACCCGAACC 1561 CGGAUGAUCU AGUCAUGGC| CAGGGUGAAG CUUAGG(UAA C)ACUAAGUG GAGGUCCGAA 1621 CCGACUGAU( GUUGAAAA)A UCAG|CGGAU GAGUUGUGAU UAG-GGGU(G AAAU)GCCAA 1681 UCGA-AUCCG GAGCUAGCUG GUUCUCCCCG -AAAUGCGU- (UUUG)-GCG CAGC|G-GUU 1741 GAUg------ ---------- ---------c |-uau-|agc -UUAG|GGGU AA|-AGC-AC 1801 UGU-UUCGGU AC-GG|GCUG U(GAAA-)GC GGUACCA-AA UCGAG-GCAA ACUCUGAAUA 1861 |CUAAG-U-- ---------- ---------- ---gug---- ua|-aucA-A C-CAGUGAGA 1921 CAGUGGGG(G AUAAG)CUUC AU--UGUCAA AAGGG(AAAC AG)CCCAGAC CACCAGCUAA 1981 GGC|CCCU-A AAUA-UUUA- CUAAGUG--G CAAAGGAAGU -GGGAAUGCA UA---GACAA 2041 CCAGGAGGUU UGC(UUAGAA GCA)GCAAC- CCU|--U(UA A)A|GAGUGC (GUAAUA)GC 2101 |UCACUGGU- CCAGUGAUCC UGC|GCCGAA AAUG-AAUGG GACU-----U AGUAU-CU|U 2161 |GCCGAAGCU |GUGG|gaug u-------(u ua-------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ------)--- -----acauc GGUAGGGGAG |CGUU-CUGU GUAAGGU-U- GAAGCAUUA- 2521 GC(GUAA)-c g-GAUGUGG| ACAAAGCAGA AGUGAGAAUG UCGGC|UUAA GUAGCGAAAA 2581 CAUUGG(UGA GAA-U)CCAA UG|CCCCGAA AACCUA-AGG UUUCCUC-UG GAAGG(UUCG 2641 U)CC|ACGGA GGGUGAGU|C AG|GGCCUAA GGCGAGGCU- --(-GAAA)- --AGCGUAGU 2701 CG-AUGG-AU GACAGG(UUA AUAUU)CCUG U|AC|ug-u- -uuauu-auu ---------- 2761 ---------- ---------- ---------- gauaa----- cgagggacgg ag--aaggcu 2821 a-agucag|c -cg-gau(-- ---guuggu- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- --------)- uaccgg-|uu ua-------- --------aa 3061 cuuucgaugu g--------- ---------- ---------- -----augag g-aau-gg(a 3121 g-aa---a-) ac-|a--uuc cga------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ------gca- 3301 gagaagug-a aua|ca--|- ---------- ---------- ---------- ---------- 3361 aaguac(--u aa-g--)gug cua------- ---------- ---------- --------aa 3421 gugauu--ga uguc-aua-| cuuccuagaa aagcucgaca uaucuu---- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- aaa-uaau-a aaca|c|CUG UACCCGAAA- CC(GACACA) 3601 GG|---UAG- GU-AG-GUA- (-GAGUA)-U ACCAA-GG-G GC||GCGAGA UAACUCUCUC 3661 UAAGGAA-CU CGGCAAAAUG GCCCCGUAAC (UUCG)GAAG AAGGGGU|AC CCU------- 3721 ---------- (--ugu-)-- ---------- ------AGGG U|U(GC-A)A UAACCAGACC 3781 CAAG|CGACU GU(UUAUCAA AA)ACACAGG UCUCCG|CUA AGUC(GCAA) GCAAAUGUAU 3841 GGGGGCUGAC GCC-UGCCCA GU|GCCGGAA GGUUAAAGAA GUCGGUUAGU A-------(u 3901 -uua)----- ---------- ---------- ---------- --------UA CGA-AGCUGA 3961 CGACUGAAGC C|CCGGUGAA C|GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC 4021 GAAAUUCCUU |GUCGGG(UA AGU)UCCGAC |CCGCACGAA AGGCGUAACG A-UUUGGGUA 4081 CUGUCUCGGA GAGAGACUCG |GCGAAAUA| GACUUGU-CU G(UG-AAGAU G)CGGACUAC 4141 CUGCACCUGG ACAG-AAAGA CCCUAUGA|A GCUUUACUGU |AACUUGGAA UU|GGGU-UU 4201 GAGCUUUUCU UGCGCAC-AG UAGGUGGGAA GCUAA-GAAA AUAGAUU(UG CG)GAUCUAU 4261 UUGAGCUAUC -AGUGAGAUA -CCACU|CU- GGAAAAGCU- AGAAUUCUAA -CCU-UGAAA 4321 GCCG(----- ---uu-auc) -CGGCCAAGG AACAGUUUCA GGUGGGCAGU UUGACUG(GG 4381 G)CGGUC|GC C-UCC(UAAA AAGUAAC)GG AGGC|G|U|G CAAAGGUUCC C|UCAGGCUG 4441 G--(UUGGAA A--)--UCAG UCGUA---GA |GU(G|UAAA G)GC-AUAA- --GGGAG--C 4501 UUGACUGCAA GAC(CUACAA )GUCGAGCAG AGAC(GAAA) GUCGGC|CUU AGUGAUCCGA 4561 CAGUG-CCG( AGUGGA)AGG |CGUGUCGCU CAAC|GGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUGA UCUCCCCCAA GA(GUUCACA )UCGACGGGG AGGUUUGGCA CCUCGAUGUC 4681 |GGCU|C|AU CGC|AUCC|U GGGGCG(GUA GUA)CGUC-C C-AAGGGU|U GGGC(UGUUC 4741 )GCCCAUG-A AAGCGGUACG CGAGCUGGGU UCAGAAC|GU C(GUGA)GAC AGUUCGGUCC 4801 AUAUCC|GGU GCAGG|CGUU AGAGUAUU|G A|AAGGA-GC UCUCCU(UAG UAC(GAGA)G 4861 GA-CC)GGGA GAG|-ACGCA CCGCUGGUGU ACCAGU|UAU UAU(GC-CA) AUAGUAAACG 4921 CUGGGUAGCU AAGUGCGGA- AAGG-AUAAC CGCU(GAAAG CAUCUA)AGU GGGAAGCCAA 4981 CCUU|AAGAU GAGUACUCU| CA|CCGU--( -uuua-)--A CGG-UU-AAG G|UC|ACGGC 5041 (AAGAUUA)G CCGU-UA--- ---------- ---------- -----AAUAG |GCGUC|AAG 5101 UGUAAGUGCA (GUAA)UGUA U|GUAGCUG| A|GACGUACU AACAGACCGA ---GG|ACUU 5161 GAUUUA---| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS (3)-Viridi 5239 bp RNA RNA 21-JAN-1998 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5239 others ORIGIN 1 |x~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 61 ~~~~|~~~~~ ~~|~~|~~~~ ~~~~~~~~|~ ~~~(~~~~~~ ~~~~~~~)~| ~~~~~~~~~~ 121 ~~~~~~|~~~ ~~(~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 181 ~~~~~|~~~~ ~~~~~~~(~~ ~~)~~~|~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~(~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~(~~~ )~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~------- 1321 ------~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 1381 ~~|~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 1801 ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~(~~ ~)~|~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~~-~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~-~~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~)~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~-~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~--~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~ // LOCUS (4)-Chloro 5239 bp RNA RNA 21-JAN-1998 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5239 others ORIGIN 1 |x~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 61 ~~~~|~~~~~ ~~|~~|~~~~ ~~~~~~~~|~ ~~~(~~~~~~ ~~~~~~~)~| ~~~~~~~~~~ 121 ~~~~~~|~~~ ~~(~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 181 ~~~~~|~~~~ ~~~~~~~(~~ ~~)~~~|~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~(~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~(~~~ )~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~------- 1321 ------~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 1381 ~~|~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 1801 ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~(~~ ~)~|~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~~-~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~-~~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~)~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~-~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~--~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~ // LOCUS chl.C.elli 5239 bp RNA RNA 11-JAN-191 DEFINITION Chloroplast Chlorella ellipsoidea. ACCESSION No information KEYWORDS No information. SOURCE Chloroplast Chlorella ellipsoidea. ORGANISM Chloroplast Chlorella ellipsoidea. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: M36158 LOCUS CHLCPG 3359 bp ds-DNA ORG 01-AUG-1990 DEFINITION C.ellipsoidea chloroplast 23S ribosomal RNA gene, complete sequence. ACCESSION M36158 KEYWORDS 23S ribosomal RNA. SOURCE C.ellipsoidea chloroplast DNA. ORGANISM Chloroplast Chlorella ellipsoidea Eukaryota; Plantae; Thallobionta; Chlorophycota; Chlorophyceae; Chlorococcales; Oocystaceae. REFERENCE 1 (bases 1 to 3359) AUTHORS Yamada,T. and Shimaji,M. TITLE An intron in the 23S rRNA gene of the Chlorella chloroplasts: Complete nucleotide sequence of the 23S rRNA gene JOURNAL Curr. Genet. 11, 347-352 (1987) STANDARD simple staff_entry COMMENT The intron found in the 23S rRNA gene of Chlorella chloroplast DNA is different from group I introns. FEATURES Location/Qualifiers rRNA 102..3308 /note="23S ribosomal RNA" intron 1246..1488 /note="intron (put.) (no splice consensus)" BASE COUNT 986 a 679 c 913 g 781 t BASE COUNT 941 a 658 c 885 g 723 t 2032 others ORIGIN 1 |--------- ---------- ----aUCAAA UGAA---GAA AACGUUACGG UGGAUA|CCU 61 -AGG|CAUCU AG|AG|ACGA UGAAG-GG|C GUG(GAAA-- ----CC-)A| ACG-AAAUGC 121 UUCGAG|GAG CU(------- -----G-GA- AACA------ -----)AGCU AUG-AUUCGG 181 AGAUU|CCCG AA-UAGG(GC AA)CCU|--- ----(----- ---uu-uau) --------AC 241 UACCUAUU(G A-AUUCA--U A)GAU-AGG- ---AAA-Gag a-caAC|CCA GUGAAG-|GA 301 (AACA)UCUU AGU-AGCUGG AGGAAAAGAA AGC(AAAC-- )GCG-AU|UC CCUUAGUAGC 361 -(GGCGA)GC GA-AAUCCCA -ACAGCCUAA Accaacucga ---------- (uuuuu--)- 421 ---------u cgagucgggg uugu-gggaa gaaaugcuau ga-------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --------ag 781 aauuuacuua acUAGGUGAA GCAG-C(U-- gaaU)C-CUG -CAC|C(AUA )GAUGG(-UG 841 AAACU)-CCA GUAGCCgaaa guucagugau aucuaa---- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ------auuu cuuauccc-- -GAGUAGCUA GGGG(CACGU 1141 GAAA)UCCCG UGUGAAUGAG CGAG(GACCA C)CUCGUAAG GCUAA-AUAC UCCUAGGUGA 1201 CCGAUAGUGA AAUAGUACC( GCGA)GGGAA AGGUGAAAA- AGAACCC(ug -ua-)GGGGA 1261 GUGAAACAGA ACAUGAAACC GU---AAGCU GUCAAGCAGU GGGAGGGC-- ---------- 1321 ------(--g aaaa--)--- ---------- -----GC--C -UGACCGCGU GCCU(GUUGA 1381 AG|A)AUGA| GCCGGCGACU UAUAGGGAGU GGC------- -GUGGUU-AA AGA-(----a 1441 aauca)-uCU -GAAGCCAAA -GC(-GAAA) GCA----AGU CU(UAA-UA) UUUCGc---- 1501 ---------- ---------- ---------- -U-A-AUGUC ACUUCUUAUC CACCCGAACC 1561 CGGGUGAUCU AACCAUGGC| CAGGAUGAAG CUUGGG(UAA A)ACCAAGUG GAGGUCCGAA 1621 CCGACCGAU( GUUGAAAA)A UCGG|CGGAU GAGCUGUGGU UAG-GGGU(G AAAU)GCCAA 1681 UCGA-ACUC- GAGCUAGCUG -UUCUCCCCG UAAAUGCGU- (UGAG)--CG CAGC|G-GUU 1741 GAUgacu--- ---------- --------ug |-GGC-|UAU -CUAG|GGGU AA|-AGC-AC 1801 UGU-UUCGGU GC-GG|GCUG C(GAGA-)GC GGUACCA-AA UCGUA-GCAA ACUAAGAAUA 1861 |CUAGG-U-- ---------- ---------- AU-GCUU--u cc|-AUCA-A C-CAGUGAGA 1921 CGGUGGGG(G AUAAG)CUUC AU--CGUCGA GAGGG(AAAC A-)CCCAGAU CACCAGCUAA 1981 GGC|CCCU-A AAUG-GCCG- CUAAGUG--G CAAAGGAGGU -AAGAAUCGU GA---AAC-A 2041 CCAGGAGGUU UGC(UUAGAA GCA)GCCAC- CCU|--U(AA A)A|GAGUGC (GUAAUA)GC 2101 |UCACUGGU- GGAGCGUUCU UGC|GCCGAA AAUG-AACGG GACU-----A AGCGG-UC|U 2161 |GCCGAAGCU |GUGG|GAUU uuuuac--(a uagaagacuu gaagcuuugc uucaagaucu 2221 aaguguaacg cagaagacuu ccacaaagug gaagauccua auaaaacc(g ua)gguuuua 2281 uuuuggacuu uuuuucguca agaacuaauu aguucuucac cauuuaacuu cugccuugca 2341 gaagucaaac aauggagagg cgccuucgcu acguuacaca aagauuuuug ucagaagacu 2401 uuuuuuccug accauggguu ua-------- ---------- ---------- ---------- 2461 --cuuc)--- guuaaaAAUC GGUAGGGGAG |CGUU-CCGC UCUAGGG-U- GAAGCAUAA- 2521 AC(GCAA)GU U-AAUGUGG| ACAAAGCGGA AGUGAGAAUG UCGGC|UUGA GUAACGCAAA 2581 CAUUGG(UGA GAA-U)CCAA UG|CCCC-AA AACCUA-AGG AUUGGAG-GA CUAGG(CUCG 2641 U)CC|AUGGA GGAUGAGU|C AG|GACCUAA GGCAAGGCC- --(-GAAA)- --GGCGUAGU 2701 CG-AUGG-AA AACAGG(UUA AUAUU)CCUG U|AC|ua-a- -uucuu-gau u--------- 2761 ---------- ---------- ---------g uac------- cgauuuacga ag--aaagca 2821 aagguua-|a -uc-aaa(-- ---auuggau u--------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- --------)u u-uggu-|gg aa-------- ---------a 3061 cguucgaggu ---------- ---------- ---------- ----gucgag a-ggu-ag(a 3121 a-uaaa-aa) cu-|a-accu ug-uuuuga- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- -------ucu uugaucaaa- gccugcacaa cuucguugu- guuggagcu- 3301 gagacgugga uac|gca-|- ---------- ---------- ---------u ucauucccug 3361 cuuggg(--u ca-c--)ucu aagcauagug gaa------- ---------- -------acu 3421 -uaacua-gu uguu-aaa-| cuuccuagaa aagcucg--a acuacuaau- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- aau-uaag-a auua|c|CUG UACCCCAAA- CC(GACACA) 3601 GG|---UAG- GU-GG-GUA- (-GAGUA)-U ACCUA-GG-G GC||GCGAGA UAACUCUCUC 3661 UAAGGAA-CU CGGCAAAAUG GCCCCGUAAC (-UCG)GGAG AAGGGGU|GC CUCU------ 3721 ---------a (-gaaa-)u- ---------- -----AGAGG C|C(GC-A)G UGUCCAG-CC 3781 CAG-|CGACU GU(UUACCAA AA)ACACAGG UCUCCG|CUA AGUC(GCAA) GACAAUAUAU 3841 GGGGGCUGAC GCC-UGCCCA GU|GCCGGAA GGUGAAGGAA GUUGGUUAuu uga-c---(c 3901 -cag)-guua ---------- ---------- ---------- ---------g aAA-AGCUGA 3961 CAACCGAAGC C|CCGGUGAA -|GGC|GGCC GU(AACUAUA )ACGGUG|C( UAA)GGUAGC 4021 GAAAUUCCUU |GUCGGG(UA AGU)UCCGAC |CCGCACGAA AGGCGUAACG A-UCUGGGCA 4081 CUGUCUCGGA GAGAGGCUCG |GUGAAAUA| GACAUGU-CC G(UGGAAGAU G)AGGACUUC 4141 CUGCACCUGG ACAG-AAAGA CCCUAUGA|A GCUUGACUGU |AGCCUGGAA UU|GAAU-UC 4201 GGGCUUU-CU UGCGCAG--C UAGGUGGGAG GCGUU-GAUA AUUCUCU(UC CG)GGAGAGU 4261 UGGAGCCAUC -AGUGAGAGA ACCACU|CU- GGAGAAGCU- AGAAUUCUAA -UGG-CGA-- 4321 UCCU(----- --uga-auc) -AGGACGUUU GACAGUUUCA GGUGGGCAGU UUGACUG(GG 4381 G)CGGUC|GC --UCC(UAAA CAGUAAC)GG AGGC|G|U|G CAAAGGUUCC C|UCAGGCUG 4441 G--(ACGGAA A--)--UCAG CCGAA---GA |GU(G|UAAA G)GC-AAAA- --GGGAG--C 4501 UUGACUGCAA GAC(CUACAA )GUCGAGCAG GGGC(GAAA) -CGGGC|CUU AGUGAUCCGA 4561 CGGUA-CCG( AGUGGA)AGG |GCCGUCGCU CAAC|GGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUGA UCUUCCCCAA GA(GUUCACA )UCGACGGGA AGGUUUGGCA CCUCGAUGUC 4681 |GGCU|C|AU CGC|AACC|U GGAGCG(GUA GUA)CGUU-C CCAAGGGU|U GGGC(UGUUC 4741 )GC--AUG-A AAGCGGUACG UGAGCUGGGU UCAGAAC|GU C(GUGA)GCA AGUUCGGUCC 4801 AUAUCC|GGU GUAGG|CGUA AGAGCAUU|G A|GAGGA-GU CUUCCA(UUG UAC(GAGA)G 4861 GA-CC)UGGA AGA|-ACGCA CCACUAGUAU ACCAGU|UCU CCU(GC-CA) AGGGGAUACG 4921 CUGGGUAGCC AAGUGCGGA- GCGG-AUAAC UGCU(GAAAG CAUCUA)AGU AGGAAGCCCA 4981 CCUC|AAGAU GAGUGCUCU| CG|UUUAGU( -UUUU-)ACU AAA-CA-AAG G|UC|ACAGU 5041 (AAGACUA)A CUGU-UC--- ---------- ---------- -----GAUAG |CUAUC|AAG 5101 UGUAAGGCUA (GUAA)UAGU U|GCAGCUG| A|GAUAGACU AACAGACCGU AAUGA|AUUU 5161 U--------| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS chl.C.vulg 5239 bp RNA RNA 26-JUN-1997 DEFINITION Chloroplast Chlorella vulgaris C-27.; . ACCESSION AB0016 4 KEYWORDS . SOURCE Chloroplast Chlorella vulgaris C-27. ORGANISM Chloroplast Chlorella vulgaris C-27. REFERENCE 1 (bases 1 to 150613) AUTHORS Sugiura,M. TITLE Direct Submission JOURNAL Masahiro Sugiura, Nagoya University, Center for Gene Research; Chikusa-ku, Nagoya, Aichi 464-01, Japan (Tel:+81-52-789-3080, Fax: +81-52-789-3081) Submitted (08-MAR-1997) to the DDBJ/EMBL/GenBank databases. STANDARD No information REFERENCE 2 (sites) AUTHORS Wakasugi,T., Nagai,T., Kapoor,M., Sugita,M., Ito,M., Ito, S., Tsudzuki,J., Nakashima,K., Tsudzuki,T., Suzuki,Y., Hamada,A., Ohta,T., Inamura,A., Yoshinaga,K. and Sugiura,M. TITLE Complete sequence of the green alga Chlorella vulgaris chloroplast genome reveals the existence of genes possibly involved in chloroplast division. (tentative) JOURNAL Unpublished (1997) STANDARD No information REFERENCE 3 (sites) AUTHORS Wakasugi,T., Nagai,T., Kapoor,M., Sugita,M., Ito,M., Ito, S., Tsudzuki,J., Nakashima,K., Tsudzuki,T., Suzuki,Y., Hamada,A., Ohta,T., Inamura,A., Yoshinaga,K. and Sugiura,M. TITLE Complete nucleotide sequence of the chloroplast genome from the green alga Chlorella vulgaris: the existence of genes possibly involved in chloroplast division JOURNAL Proc. Natl. Acad. Sci. U.S.A. 94 (11), 5967-5972 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: AB001684 BASE COUNT 837 a 597 c 841 g 623 t 2341 others ORIGIN 1 |--------- ---------- -----UCAAA UGAA---GUA AAGCGUAGGG CGGAUA|CCU 61 -AGG|CACCU AG|AG|ACGA UGAAG-GG|C GUG(GAA--- ----CC-)G| ACG-AAACGC 121 UUCGGG|GAG CU(------- -----G-GA- AACA------ -----)AGCA AUG-AUCCGG 181 AGAUU|CCCG AA-UAGG(GC AA)CCU|--- ----(----- ---cu-ugu) --------AC 241 UUCUAACU(G A-AUUCA--U A)GGU-UAG- ---AAA-GAG G-caAC|UCA GUGAACU|GA 301 (AACA)UCUU AGU-AGCUGA AGGAAAAGAA AGC(AAAC-- )GCG-AU|UC CCUGAGUAGU 361 -(GGCGA)GC GA-AAUGGGA -ACAGCCUAA Accaagu--- ---------- (uuuua--)- 421 ---------- --acuugggg ucgu-gggaa aacau----- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- -uuaacaaau 781 uucuuaauaa uuuagacGAA gcag-c(u-- gaaa)c-cug -cac|c(aua )GAUGG(-UG 841 AAAGU)-CCA GUAGUCcaaa aaucaaaaag auuuuuc--- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- --------ag uuuauccc-- -GAGUAGCAU GGGA(CACGU 1141 GAAA)UCCCG UGUGAAUCAG CGAG(GACCA C)CUCGUAAG GCUAA-AUAC UCCUAGGUGA 1201 CCGAUAGCGA ACUAGUACC( GUGA)GGGAA AGGUGAAAA- GAACCCC(ug -ua-)GGGGA 1261 GUGAAAUAGA ACAUGAAACC CU---AUGCU GACAACCAGU GGGAGGCG-U ---------- 1321 ------(--u uaa---)--- ---------- ----ACG--C -UGACCGCGU GCCU(GUUGA 1381 AG|A)AUGA| GCCGGCGACU UAGAAAAUGU GGC------- -AAGGUU-AA GGA-(----a 1441 acaua)-UCC -GGAGCCGAA -GC(-GAAA) GCA----AGU CU(GAA-UA) GGGCGA---- 1501 ---------- ---------- ---------- -u-a-aaGUC AUAUUUUCUA GACCCGAACC 1561 CGGGUGAUCU AACCAUGAC| CAGGAUGAAG CUUGGG(UGA C)ACCAAGUG AAGGUCCGAA 1621 CCGACCGAU( GUUGAAAA)A UCGG|CGGAU GAGUUGUGGU UAG-CGGU(G AAAU)ACCAG 1681 UCGA-ACUCG GAGCUAGCUG GUUCUCCCCG -AAAUGCGU- (UGAG)-GCG CAGC|G-GUU 1741 UAUa------ ---------- ---------a |-ggc-|UGU -UUAG|GGGU AA|-AGC-AC 1801 UGU-UUCGGU GC-GG|GCUG C(GAAA-)GC GGUACCA-AA UCGUG-GCAA ACUCUGAAUA 1861 |CUAGA-U-- ---------- ---------- ac-gcuu--u uu|-AUAA-G C-CAGUGAGA 1921 CGGUGGGG(G AUAAG)CUUC AU--CGUCGA GAGGG(AAAC AG)CCCAGAU CACUAGCUAA 1981 GGC|CCCA-A AAUG-AUCG- UUAAGUG--A CAAAGGAGGU -GAGAAUGCA GA---AACAA 2041 CCAGGAGGUU UGC(UUAGAA GCA)GCCAU- CCU|--U(UA A)A|GAGUGC (GUAAUA)GC 2101 |UCACUGGU- GGAGCGUUCU UGC|GCCGAA AAUG-UCCGG GACU-----A AAUGA-UC|U 2161 |GCCGAAGCU |GUGG|gaua guu-----(u auua------ ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ------)--- ---aacuauc GGUAGGGGAG |CGUU-CUGC UUUAGGG-U- GAAGCUGUG- 2521 AU(GAAA)GU C-AUAGUGG| ACGAAGCGGA AGUGAGAAUG UCGGC|UUGA GUAACGCAAA 2581 CAUUGG(UGA GAA-U)CCAA UG|CCCCGAA AACCUA-AGG AUUCCUC-CA CUAGG(UUCG 2641 U)CC|AUGGA GGGUGAGU|C AG|GACCUAA GGCGAGGCC- --(-GAAA)- --GGCGUAGU 2701 CG-AUGG-CA AACAGG(UUA AUAUU)CCUG U|AC|uc-u- -uuggu-guu u--------- 2761 ---------- ---------- --------gg uac------- cgagggacgg ag--caggca 2821 gagauug-|g -cc-gag(-- ---auuggau ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- --------)u u-cggu-|gg aa-------- ---------a 3061 cuuucgauac ---------- ---------- ---------- ----guugaa a-ggu-ag(a 3121 a-gaaa-aa) cu-|a-accu ug-------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- -----agua- 3301 aagaagug-a uac|guc-|- ---------- ---------- ---------- ---------u 3361 ucaucu(--- uu-u--)aga ugaa------ ---------- ---------- -------ggc 3421 -caauua-gc uguc-aua-| cuuccaagaa aagcucg--a acuacugag- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- aaa-cacc-a cgga|c|CUG UACCGUAAA- CC(GACACA) 3601 GG|---UGG- GU-UG-GUA- (-GAGUA)-U ACCAA-GG-G GC||GCGAGA UAACUCUCUC 3661 UAAGGAA-CU CGGCAAAAUA ACCCCGUAAC (UUCG)GGAG AAGGGGU|GC CAAgua---- 3721 --------ac (-ucaaa)aa ---------- ---ugcUUGG U|C(GC-A)G UGACCAGGCC 3781 CUGG|CGACU GU(UUAUCAA AA)ACACAGG UCUCCG|CAA AGUC(GUAA) GACAACAUAU 3841 GGGGGCUGAC GCC-UGCCCA GU|GCCGGAA GGUUAAAGAA GUUGGUUAuu ca------(u 3901 -uug)----- ---------- ---------- ---------- -------ugg aga-AGCUGA 3961 CGACUGAAGC C|CCGGUGAA C|GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC 4021 GAAAUUCCUU |GUCGGG(UA AGU)UCCGAC |CCGCACGAA AGGCGUAACG A-UCAGGGCA 4081 CUGUCUCGGA GAGAGACUCG |GUGAAAUA| GACAUGU-CU G(UG-AAGAU G)CGGACUAC 4141 CUGCACCUGG ACAG-AAAGA CCCUAUGA|A GCUUGACUGU |AGCUUGGAA UU|GGGU-UC 4201 GGGCUCUUCU UGCGCAG-CC UAGGUGGGAG GCGUU-GAAA GUUUUCU(UU UG)GGAAAAC 4261 UAGAGCCAAC -AGUGAGAGA -CCACU|CU- GGAGGAGCU- AGAAUUCUAA -UGG-CGU-- 4321 UCCU(----- --uga-agc) -AGGACGCUU GACAUUUUCA GGUGGGCAGU UUGACUG(GG 4381 G)CGGUC|AC C-UCC(UAAA AGGUAAC)GG AGGU|G|U|G CAAAGGUUCC C|UCAGGCUG 4441 G--(ACGGAA A--)--UCAG CCGUA---GA |GU(G|UAAA G)GC-AGAA- --GGGAG--C 4501 UUGACUGCAA GAC(CUACAA )GUCGAGCAG GGGC(GAAA) GCCGGC|CUU AGUGAUCCGA 4561 CGGUU-CCA( UGUGGA)AGG |GCCGUCGCU CAAC|GGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUGA UCUUCCCCAA GA(GUUCACA )UCGACGGGA AGGUUUGGCA CCUCGAUGUC 4681 |GGCU|C|AU CGC|AACC|U GGGGCG(GUA GUA)CGUC-C C-AAGGGU|U GGGC(UGUUC 4741 )GCCCAUG-A AAGCGGUACG UGAGCUGGGU UCAGAAC|GU C(GUGA)GAC AGUUCGGUCC 4801 AUAUCC|GGU GUAGG|CGUU AGAGCAUU|G A|GAGGA-GC CUUCCA(UAG UAC(GAGA)G 4861 GA-CC)UGGA AGG|-ACGCA CCUCUGGUAU ACCAGU|UAU CGU(GC-CA) ACGGUACACG 4921 CUGGGUAGCC AUGUGCGGA- GUGG-AUAAC CGCU(GAAAG CAUCUA)AGU GGGAAGCCCA 4981 CCUC|AAGAU GAGUGCUCU| CC|------( ------)--- ----AU-UAG G|UC|ACAGG 5041 (AAGACAA)C CUGG-UU--- ---------- ---------- -----GAUAG |GCAGA|AGG 5101 UGUAAGGCUA (GUAA)UAGU U|UCAGCUG| A|UCUGUACU AAUAGACCGA --UUG|AUUU 5161 UGacc----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS chl.N.euca 5239 bp RNA RNA 11-JAN-191 DEFINITION Chloroplast Nanochlorum eucaryotum. ACCESSION No information KEYWORDS No information. SOURCE Chloroplast Nanochlorum eucaryotum. ORGANISM Chloroplast Nanochlorum eucaryotum. REFERENCE 1 (bases 1 to 150613) AUTHORS Weinblum,D. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: X76084 LOCUS CHNERRNA 5431 bp DNA PLN 24-NOV-1993 DEFINITION N.eucaryotum chloroplast 16S rRNA, tRNA-Ile, tRNA-Ala and 23S rRNA genes. ACCESSION X76084 KEYWORDS 16S ribosomal RNA; 23S ribosomal RNA; tRNA-Ala; tRNA-Ile. SOURCE Nanochlorum eucaryotum ORGANISM Chloroplast Nanochlorum eucaryotum Eukaryota; Plantae; Thallobionta; Chlorophyta; Chlorophyceae. REFERENCE 1 (bases 1 to 5431) AUTHORS Weinblum,D. TITLE Direct Submission JOURNAL Submitted (10-NOV-1993) to the EMBL/GenBank/DDBJ databases. D. Weinblum, Inst. fuer Physiologiche Chemie, Univ. Mainz, Duesbergweg 6, 55099 Mainz, FRG STANDARD full automatic REFERENCE 2 (bases 1 to 5431) AUTHORS Schreiner,M., Geisert,M., Oed,M., Arendes,J., Guengerich,U., Breter,H.J., Stueber,K. and Weinblum,D. TITLE Phylogenetic relationship of the green alga Nanochlorum eukaryotum deduced from its chloroplast rRNA sequences JOURNAL Unpublished STANDARD full automatic FEATURES Location/Qualifiers source 1..5431 /organism="Nanochlorum eucaryotum" /chloroplast rRNA 90..1551 /product="16S ribosomal RNA" tRNA 1749..1819 /product="tRNA-Ile" tRNA 1914..1986 /product="tRNA-Ala" rRNA 2010..4964 /product="23S ribosomal RNA" BASE COUNT 1634 a 1073 c 1403 g 1321 t ORIGIN BASE COUNT 881 a 587 c 792 g 695 t 2284 others ORIGIN 1 |--------- ---------- --UGGUCAAA UGAU---AGA AAGCGUAGGG UGGAUA|CCU 61 -AGG|CACCU AG|AG|ACGA UGAAG-GG|C GUC(-caa-- -----C-)G| ACG-AUACGG 121 UUCGGG|GAG UU(------- -----g-ga- aacg------ -----)AACU UUG-AUCCGA 181 AGAUU|CCCG AA-UGGG(GC AA)CCC|--- ----(----- --ua--uaa) --------AC 241 UUCUUACU(G A-AUUCA--U A)GGU-AAG- ---AAA-Gag a-aaAC|UUA GUGAACU|GA 301 (AACA)UCUU AGU-AGCUAA AGGAAGAGAA AGC(AAAC-- )GCG-AU|UC CCUGAGUAGU 361 -(GGCGA)GC GA-AAUGGGA aCAAGCCUAA Accaauau-- ---------- (auuu---)- 421 ---------- -auauugggg uugu-gggaa aacau----- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- --acuauauu uauauaugua 781 uuagaaagau uu-agacGAA auag-c(u-- gaau)c-cua -uac|c(aaa )gaAGG(-UA 841 AAAGU)--CU GUAguuaaaa aauacuaaaa aauacgaaca uauguucaau ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- --------au guuuaucc-- -GAGAUGCAU GGGA(CACGU 1141 GAAA)U-CCG UGUGA-U--G CGAG(GACCA C)CUCGUAAG GCUAA-AUAC U-CUAGGUGA 1201 CCGAUAGUGA AGUAGUACC( GAAA)--GAA AGGUGAAAA- GAACCCC(ug -au-)GGG-A 1261 GUGAAAUAGA ACAUGAAACC -U---ACGCU GACAAACAGU GGGAGGUA-C ---------- 1321 ------(--- uuua--)--- ---------- ----GUA--C -UGACCGCGU ACCU(GUUGA 1381 AG|A)AUGG| GCCGGCGACU UAGAAAAAGU GGC------- -AAGGUUuAA aga-(----c 1441 ucaaa)-ucu -GGAGCCUAA -GC(-GAAA) GCA----AGU CU(GAA-UA) GGGCAu---- 1501 ---------- ---------- ---------u uu-a-aaGUC AUUUUUUCUA GACCCGAACC 1561 CGGGUGAUCU AACCAUGAC| CAGGAUGAAG CUUGGG(UAA U)ACCACGUG AAGGUCCGAA 1621 CCGACCGAU( GUUGAAAA)A UCGG|CGGAU GAGUUGUGGU UAG-CGGU(G AAAU)ACCAG 1681 UCGA-ACUCG GAGCUAGCUG GUUCUCCCCG -AAAUGCGU- (UGAG)-GCG CA-C|G-GUC 1741 AGca------ ---------- ---------a |-gac-|uAU -CUAG|GGGU AA|AAGC-AC 1801 UGU-UUCGGU GC-GG|GCCG C(GAAA-)GC UGUACCA-AA UCGUG-GCAA ACUCUGAAUA 1861 |CUAGA-U-- ---------- ---------- au-guua--u uu|-UCUG-G C-CAGUGAGA 1921 CAGUGGGG(G AUAAG)CUUC AU--UGU-AA GAGGG(AAAC A-)CCCAGAU -AC--GCUAA 1981 GGC|CCCU-A AAUG-AUUG- UUAAGUG--G CAAAGGAGGU -GAGAAUGCU CA---GACAA 2041 CCAGAAGGUU UGC(UUAGAA GCA)GCAAU- CCU|--U(UA A)A|GAGUGC (GUAACA)GC 2101 |UCACUGGU- UAAGCGUUCU UUC|GCCGAA AAUG-U-CGG GACU-----A AAUGA-UC|U 2161 |CCCGAAGCU |GUGG|gaua uuc-----(u aau------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ------)--- ---gaauauc GGUAGGGGAG |CGUUGCUGc ucUAGGG-U- GAAGCAAAU- 2521 AU(GUAA)GU A-UUUGUGG| ACGAAGCAGA AGUGAGAAUG UCGGC|UUGA GUAACGUAAA 2581 CAUUGG(UGA GAA-U)CCAA UG|CCCCGAA --CCUA-AGG A-UCCU--CA CCAGG(-UCG 2641 U)C-|AUGGA GGGUGAGU|C AG|GACCUAA GGCGAGGCU- --(-GAAA)- ---GCGUAGA 2701 CG-UUGG-CA AACAGG(UUA AUAUU)CCUG U|AC|u--a- -uuuuauauu ---------- 2761 ---------- ---------- ---------- ugaua----- ccaaggacga ag--caggua 2821 gagauuu-|g -cu-gu-(-- --uauuggau u--------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- --------)- u-cagu-|gu aa-------- ---------g 3061 uucucaaggc ---------- ---------- ---------- ----guugag a-ggu-ag(a 3121 a-gaaaaa-) cu-|a-uggu uga------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ------gcu- 3301 aagcaaacga acg|ugca-- ---------- ---------- ---------- ---------- 3361 guacuu(cau uuuuaa)aau aacgu----- ---------- ---------- -------auu 3421 -ucuuaa-uc uauc-aua-- cuugcaacga aacaugcu-u acgaac---- ---------- 3481 ---------- ---------- ---------- ---------- ---------- -uauucacuu 3541 aaagu----- ---------- -aa-ucaa-a auga|c|CUG UACCGUAAAu CC(GACACA) 3601 GG|cuacagc gu-uA-GUA- (-GAGUA)-U ACUAAcGGcG GC||GCGAGA UAACUCUCUC 3661 UAAGGAAuCU CGGCAAAaUG A-CCCGUA-C (UUCG)G-AG AAGGG-U|GC ccucu----- 3721 ---------- (-cuaa-)-- ---------- ----agagg- C|C(GCgA)G U-ACCAGGCC 3781 CAGG|CGACU GU(UUAUCAA AA)ACAUAGG UCUCCG|CAA AGUC(GUAA) -cc--CAUAc 3841 u-GGGCUGAC GCC-UGCCCA GU|GCCGGAA GGUUAAGGAA GUAGGUUAcc a--------u 3901 -uua------ ---------- ---------- ---------- --------uc caa-AGCUUA 3961 CGACUGAAGC C|CCGGCGAA C|GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC 4021 GAAAUUCCUU |GUCGGG(UA AGU)UCCGGC |CCGCACGCA AGGCUUA-CG U-ACU-GGCA 4081 CUGUCUCGGA GAGAG-CUCG |GUGAAAUA| GAC-UGU-CU G(UG-AAGAU -)C-GACUAC 4141 CUACACUUGG ACAGuAAAGG CCCUAUGA|A GCUUGACUGU |AGCUUGUAA UU|gugucUC 4201 GCGCUUUUUU UGCGCAG-ac UAGGUGG-AG GCUaaugaag aaguauu(uu ug)gauauuu 4261 uccAGCCAUC -AGUGAGAGU -CCACU|CUg aagaacgcuu AGAAUUCUAA -UGG-CGU-- 4321 UCCU(----- --uga-agc) -AGGACGCUU GACAGUUUCA GGUGGGCAGU UUGACUG(GG 4381 G)CGGUC|AC C-UCC(UAAA AGGUAAC)GG AGGU|G|U|G CAAAGGUUCC C|UCAGGCUG 4441 G--(ACGGAA A--)--UCAG CCGUA---GA |GU(G|UAAA G)GC-AGAA- --GGGAG--C 4501 UUGAUCGCAA GAC(CUACAA )GUCGAGCAG GGGC(GAAA) -CGGGC|CUU AGUGAUCCGA 4561 CGGUU-CCG( UGUGGA)-ga |aCCGUCG-u aAAC|GGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUGA UCUU-CCCAA GA(GUUCACA )UCGACGGGA AGGUUUGGCA CCUCGAUGUC 4681 |GGCU|C|UA CGC|AACC|U -GGGC-(GUA GUA)CGUC-C --AAGGGU|U GGGC(UGU-C 4741 )GC-CAU--G AAGCGU-ACG UAAGCUCGGG UCAGAAC|GU -(GAGA)-GC AGUUCGGUCC 4801 AUAUCC|GGU GUAGG|CGCU GGAGCAUU|G A|GAGGA-GU CUUCCA(UAG UAC(GAGA)G 4861 GA-CC)UGGA AGA|ACUACA CCUCUGGUAU ACCAGU|UCU CAC(GC-CA) GUGGGAaacG 4921 CUGGGUAGCC AAGUGUGGA- GUGG-AUAAC CGCU(GAAAG CAUCUA)AGU GGGAAGCCCA 4981 CCUC|AAGAU GAGUGCUCC| UA|------( ------)--- -----U-GAG G|UC|ACGGC 5041 (AAGACUA)G CCGG-uu--- ---------- ---------- -----GAUAG |GCAGU|AGG 5101 UCUAAGUCUA (GCAA)UAGA U|GUAGCUG| A|GCUGUACU AAUAGACCCA --uug|auuu 5161 ugacc----| -----uuauc uauagcacua cauaaacuau guagugcuaa uuaucuagug 5221 uucuagcuuc uaug||||| // LOCUS chl.P.wick 5239 bp RNA RNA 17-JAN-1998 DEFINITION Chloroplast Prototheca wickerhamii.; 16S ribosomal RNA; 23S ribosomal RNA; 30S ribosomal protein S4; chloroplast; rps4 gene; rrn16 gene; rrn23 gene; trnA gene; tRNA-Ala (UGC); tRNA-Asn (GUU); tRNA-Ile (GAU); trnI gene; trnN gene. ACCESSION AJ2228 2 KEYWORDS 16S ribosomal RNA; 23S ribosomal RNA; 30S ribosomal protein S4; chloroplast; rps4 gene; rrn16 gene; rrn23 gene; trnA gene; tRNA-Ala (UGC); tRNA-Asn (GUU); tRNA-Ile (GAU); trnI gene; trnN gene. SOURCE Chloroplast Prototheca wickerhamii. ORGANISM Chloroplast Prototheca wickerhamii. REFERENCE 1 (bases 1 to 5001) AUTHORS Knauf,U., Wolff,G., Kueck,U. and Hachtel,W. TITLE DNA of the colourless alga Prototheca wickerhamii 5.0 kb part of the ribosomal-RNA genecluster from the plastid JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 5001) AUTHORS Knauf,U. TITLE Direct Submission JOURNAL Submitted (23-DEC-1997) Knauf U., Molekulare Biochemie, Botanisches Institut der Universitaet Bonn, Kirschallee 1 53115 Bonn FRG STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: AJ222802 BASE COUNT 742 a 411 c 575 g 579 t 2932 others ORIGIN 1 |--------- ---------- -----UCAAA UGAA---UUA AGGCGUAGGA CGGAUA|CCU 61 -AGG|CAUCU AG|AG|ACGA AGAAG-GG|C GUG(GAA--- ----CC-)G| ACG-AUACAC 121 UUCGGG|GAG UU(------- -----G-GA- AACA------ -----)AGCA UAG-AUCCGA 181 AGAUU|CCCG AA-UAGG(GC AA)CCU|--- ----(----- --uu--uau) --------AC 241 UUUUUGCU(G A-AUUCA--U A)GGC-AAA- ---AAA-Gag a-caAC|UCA GUGAACU|GA 301 (AACA)UCUU AUU-AACUGA AGGAAUAGAA AGC(AAAC-- )GCG-AU|UU CCUAAGUAGU 361 -(GGCGA)GC GA-AAGGGAA -ACAGCCUAA Accaauuu-- ---------- (uuag---)- 421 ---------- -aaauugggg uugu-gggaa aaccuaauaa uauuauuauu uuauaauaug 481 aaaaaaaaau gguua----- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------u 781 uuuuuuaaau u--agacCAA gcag-c(u-- gaau)a-cug -cgc|c(aua )gaUGG(-UG 841 AAAGC)-CCA GUAguuaaaa auuuaauaaa agcuaug--- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- -------ugu uu-uuccc-- -AAGUAAUAC GGGA(CACGU 1141 GAAA)UCCCG UAUGAAUCCG CGAG(GACCA C)CUCGUAAG GCUAA-AUAC UCCUAGAUGA 1201 CCGAUAGUGA AAUAGUACC( GUGA)GGGAA UGGUGAAAA- GAACCCC(ug -ua-)GGGGA 1261 GUGAAAAAGA GCAUGAAAUC CU---ACGCU GACAAACAGU GGGAGGUU-- ---------- 1321 ------(--- uuuuu-)--- ---------- ----AAA--C -UGACCGCAU GCCU(GUUGA 1381 AG|A)AUGA| GCCGGCGACU UAGAAAAGGU GGC------- -AUGGUU-AA GGA-(----- 1441 aauau)-UCC -GAAGCCGUA -GC(-AAAA) GCG----AGU CU(GAA-UA) GGGCGa---- 1501 uaaaauau(- auua------ )auauuuaga au-c-uAGUC AUUUUUUCUA GACCCGAACC 1561 CGGGUGAUCU AACCAUGAC| CAGGAUGAAG CUUGGG(UGA U)ACCAAGUG AAGGUCCGAA 1621 CCGACCGAU( GUUGAAAA)A UCGG|CGGAU GAGUUGUGGU UAG-CGGU(G AAAU)ACCAG 1681 UCGA-ACCCG GAGCUAGCUG GUUCUCCCCG -AAAUGCGU- (UGAG)-GCG CAGC|A-GUA 1741 CAUcu----- ---------- ---------a |-guc-|uAU -CUAG|GGGU AA|-AGC-AC 1801 UGU-UUCGGU GC-GG|GCUG U(GAGA-)AC GGUACCA-AA UCGUG-GCAA ACUCUGAAUA 1861 |CUAGA-A-- ---------- ---------- au-gac---- -g|-AUGU-A G-UAGUGAGA 1921 CUGUGGGG(G AUAAG)CUCC AU--UGUCAA GAGGG(AAAC AG)CCCAGAC CACCAGCUAA 1981 GGC|CCCA-A AAUG-GUAA- UGUAGUG--A CAAAGGAGGU -GAAAAUGCA AA---UACAA 2041 CCAGGAGGUU GGC(UUAGAA GCA)GCCAU- CCU|--U(UA A)A|GAGUGC (GUAAUA)GC 2101 |UCACUGGUG CUAGCGUUUU UGC|GCCGAA AAUG-UCCGG GACU-----U AAUUA-CC|U 2161 |GCCGAAGCU |GUGG|GAUA UUAAU---(a aaauuauuau auauuuaauu uuuaauauau 2221 aucuauugau a--------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ------)--- -AUUUAUAUC GGUAGGGGAG |CGUU-CUGC UUUAGGG-U- GAAGUUUAA- 2521 GU(GUAA)AU U-UAGAUGG| ACCAAGCAGA AGUGAGAAUG UCGGC|UUGA GUAACGCAAA 2581 CAUUGG(UGA GAAUU)CCAA UG|-CCCGUU AACCUA-AGG AUUCCUU-UA CUAGG(UUCG 2641 U)CC|AUGAA GGGUGAGU|C AG|GACCUAA GGCGAG-CC- --(-GAAA)- --GGCGUAGU 2701 CG-AUGG-CA AACA-G(UUA AUAUU)CCUG U|AC|ua-u- -uuuau-auu ---------- 2761 ---------- ---------- -------uga ua-c------ caggggacag aa--gaggua 2821 gcaauuu-|g -uc-ga-(-- --uauuggau u--------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- --------)- u-cggu-|gu aa-------- ---------a 3061 cuuacaaguc ---------- ---------- ---------- -------cgg g-gaa-ag(a 3121 a-uaaaaa-) cu-|u-auuc cu-auauaa- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- -----agcu- 3301 aagaagug-a uac|auuu|- ---------- ---------- ---------- --------au 3361 auuuuu(--u cu-a--)aaa aauaua---- ---------- ---------- -------aau 3421 -uaauuu-uc uauc-aua-| uucucaagaa aagccug--u auuaucuaua ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- -aa-uaua-a aaua|c|CUG UACCAUAAA- CC(GACACA) 3601 GG|---UGG- GU-AG-GUA- (-GAGUA)-U ACUAA-GG-G GC||GCGAGA UAACUCUCUC 3661 UAAGGAA-CU CGGCUAAAUG ACCCCGUAAC (UUCG)GAAG AAGGGGU|GC CAAGGA---- 3721 ------guaa (-uuuu-)uu ac-------- ---UUUUUGG C|C(GC-A)G UGACCAGGCC 3781 CAGG|CGACU GU(UUAUCAA AA)ACACAGG UCUCCG|CAA AGUC(GUAA) GACAACAUAU 3841 -GGGGCUGAC GCC-UGCCCA GU|GCCGGAA GGUUAAAGAA GCGGGUUAUu cu------(u 3901 uuuu)---ag ---------- ---------- ---------- ---------g AAAAAGCUUG 3961 CGACUGAAGC C|CCGGUGAA C|GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC 4021 GAAAUUCCUU |GUCGGA(UA AGU)CCCGAC |CCGCACGAA AGGCGUAACG A-UCUGGGCG 4081 CUGUCUCGGA GAGAGACUCG |GUGAAAUA| GACAUGU-CU G(UG-AAGAU G)CGGACUAC 4141 CUGCACCUGG ACAG-AAAGA CCCUAUGA|A GCUUGACUGU |AGCCUGAAA UU|GAAU-UU 4201 GGGUUUUUUU UGCGCAG-UC UAGGUGGGAG GCGUU-GAAA AUUUUCU(UU UG)GGAAAAU 4261 UAGAGCCAAC -AGUGAGAGA -CCACU|CU- AGAAAAGCU- AGAAUUC~~~ ~~~~~~~~~~ 4321 ~~~~(~~~~~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ 4381 ~)~~~~~|~~ ~-~~~(~~~~ ~~~~~~~)~~ ~~~~|~|~|~ ~~~~~~~~~~ ~|~~~~~~~~ 4441 ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ |~~(~|~~~~ ~)~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~(~~~~) ~~~~~~|~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~( ~~~~~~)~~~ |~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~|~~~~ 4621 ~~~~|~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 |~~~~|~|~~ ~~~|~~~~|~ ~~~~~~(~~~ ~~~)~~~~-~ ~~~~~~~~|~ ~~~~(~~~~~ 4741 )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~(~~~~)~~~ ~~~~~~~~~~ 4801 ~~~~~~|~~~ ~~~~~|~~~~ ~~~~~~~~|~ ~|~~~~~~~~ ~~~~~~(~~~ ~~~(~~~~)~ 4861 ~~~~~)~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~(~~~~~) ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~~)~~~ ~~~~~~~~~~ 4981 ~~~~|~~~~~ ~~~~~~~~~| ~~|~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ ~|~~|~~~~~ 5041 (~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~|~~~ 5101 ~~~~~~~~~~ (~~~~)~~~~ ~|~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 5161 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS chl.C.e.m 5239 bp RNA RNA 11-JAN-191 DEFINITION Chlamydomonas moewusii subsp. Chlamydomonas eugametos (Z17234). ACCESSION No information KEYWORDS No information. SOURCE Chlamydomonas moewusii subsp. Chlamydomonas eugametos (Z17234). ORGANISM Chlamydomonas moewusii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: Z17232 :X68913-X68918 BASE COUNT 957 a 645 c 877 g 725 t 2035 others ORIGIN 1 |--------- ---------- -----UCAAA UGAA---CUA AGGCUUACGG CGGAGA|CCU 61 -AGG|CACCC AG|AG|ACGA UGAAG-GG|C GCA(GAUA-- ----CC-)G| GCG-AAACGC 121 UUCGGG|GAA CU(------- -----G-GC- AACG------ -----)AGUU UUG-AUCCGA 181 AGAUC|CCCG AA-UAGG(GC AA)CCU|--- ----(----- --ca--aga) --------AC 241 UACCUAU-(G A-AUUCA--U A)UGU-AGG- --AU-A-Gag a-caAC|CCA GUGAAUU|GA 301 (AACA)UCUU AGU-AACUGG CGGAAAAGAA AGC(AAAA-- )GCG-AU|UC CCGUAGUAGC 361 -(GGCGA)GC GA-ACCGGGA -ACAGCCUAA Accu------ ---------- (guaaaa-)- 421 ---------- -----agggg uagu-gggaa gaguaaaucg auaaccugaa caaucgauaa 481 aaagcaauau u--uuuaaua uugcgauuua aaaaacugga ggcuuugaac cucgg----- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- --cccgcggc uuugccgcgg 721 gccgagccag aacuuccgcu uuucuuaagc ggaaauuagu gguuugccac agauauaauu 781 aaaucacgua aU-AAACGAA GCAG-C(U-- GAAU)C-CUG -CAC|C(AUA )GAUGG(-UG 841 AAAGU)-CCA GUAGUUga-- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- -----aaacg aaaaaaaacu caaauccc-- -GAGUAGCAU GGGA(CACGU 1141 GGAA)UCCCG UGUGAAUCAG CGAG(GACCA C)CUCGUAAG GCUAA-AUAC UCCUGGGUGA 1201 CCGAUAGUGC AA-AGUACC( GCGA)GGGAA UGGUAAAAA- GAACCCC(UG -UA-)GGGGA 1261 GUGAAAUAGA ACAUGAAACC GU---AAGCU GACAAGCAGU GGGAGGUU-C ---------- 1321 ------(--- aaaa--)--- ---------- ----GGA--C -UGACCGCGU GCCU(GUUGA 1381 AG|A)AUGA| GUCUGCGACU UAUAGGGAGU GGC------- -AAGGUU-AA GGa-(----g 1441 uaaaa)-uCC -GGAGCCUUA -GC(-GAAA) GCG----AGU CU(UAA-UA) GGGCGa---- 1501 ---------- ---------- ---------- -c-a-aaGUC ACUUCUUAUG GACCCGAACC 1561 CGGGUGAUCU AUUCAUGGC| CAGGAUGAAG CGAGGG(UAA C)ACUUCUUG GAGGUCCGAA 1621 CCCACCGAU( GUUGAAAA)A UCGG|GGGAU GAGCUGUGAA UAG-GGGA(G AAAU)UCCAA 1681 UCGA-ACUCG GAGCUAGCUG GAUCUCCCCG -AAAUGCGU- (UGAG)-GCG CAGC|G-GUG 1741 ACUau----- ---------- ---------g |-agc-|uAU -CUAG|AGGU AA|-AGCGAC 1801 UGU-UUCGAU GC-GG|GCUG C(GAAA-)GC GGUACCA-AG UCGUG-GCAA ACUCAGAAUA 1861 |CUAGA-U-- ---------- ---------- auaGCCu--- uc|-AGUCAA C-CAGUGAAA 1921 CACGUCGG(G AUAAG)CUGA UG--UGUUAA GAGGG(AAAC AG)CCCAGAU CACCAGCUAA 1981 GGC|CCCU-A AAUGAGUCA- CUAAGUG--G AGAAGGAUGU -GAUGAUGCU AA---AACAA 2041 CCAGGAAGUU UGC(UUAGAA GCA)GCCAC- CUU|--U(GA A)A|GAGUGC (GUAAUA)GC 2101 |UCACUGGU- AAAGCGUUGU UGC|GCCGAA AAUG-GCCGG GACU-----A AGUGA-CC|U 2161 |GCCGAAGCU |GUGA|UAUU U-------(u u/---uauaa uuuuaaauuu uaugcuacac 2221 aucccuguaa cgcuucaugc gucaaacuag ggcgcauuuu cg(cuacg)c gaaacugcga 2281 cacguuguac guagacccac uaaagcgcau cagugcaaaa aagagugggu gugugauuau 2341 uaaa------ ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 -----/)--- -----GAAUA GGUAGGGGAG |CGUU-CUCU UAUCGGG-U- GAAGUUUUC- 2521 AC(GGAA)GU G-AGGAUGG| ACGAAUGAGA AGCGAUAUUG UAGAU|UUGA GUAACGAAUA 2581 CAUUGG(UGA GAA-U)CCAA UG|CCCCGAA AACCUA-AGG GUUCCUC-CA CUAGG(UUCG 2641 U)CC|AUGGG GGGUGAGU|C AG|GUCCUAA GGCUAGUUCG A-(-UAAA)- UCGAAGUCGU 2701 CG-AUGG-GA AACAGG(UUA AUAUU)CCUG U|AC|ug-a- -uuuua-uug ---------- 2761 ---------- ---------- ---------g gaac------ caagugacga ag--gagacu 2821 aaacagaa|a -cu-gc-(-- --uacuggau u--------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- --------)- u-cagu-|gg aa-------- ---------g 3061 cau-uaaggu ---------- ---------- ---------- ----guugag a-gcu-ag(a 3121 a-caaa-aa) cu-|a-ugcu uga------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ------gcu- 3301 gagaugug-a ucc|-cuc|- ---------- ---------- ------uuuu auggug-auu 3361 uaugcu(--u uc-g--)ggu augauuccac cauauug--- ---------- -------gag 3421 -ucugu--ga uguc-aaa-| cuuccaagaa aagcuug--a acaccuua-- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- aca-auaa-a guca|c|CUG UACCUGAAA- CC(GACACA) 3601 GG|---UAG- GU-UG-GUA- (-GAGUA)-U ACCAA-GG-G GC||GCGAGA GAACUCUCUC 3661 UAAGGAA-CU CGGCAAACUG GCCCCGUAAC (UUCG)GAAG AAGGGGC|GC CCUUuuu--- 3721 -------auu (-uaac-)ga u--------- -aaaaAAGGG U|C(GC-A)G UGUCCAGGCU 3781 CAAG|CAACU GU(UUAUCAA AA)ACACAGG UCUCCG|CAA AGUC(GUAA) GACGAUAUAU 3841 GGGGGCUGAC GCC-UGCCCA GU|GCCGGAA GGUUAAGGAA GUUGGUUAuu ga------(G 3901 -UAA)---uc ---------- ---------- ---------- ---------a aGA-AGCUGA 3961 CGACUGAAGC C|CCGGUGAA C|GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC 4021 GAAAUUCAUU |GCCAAG(UA AGU)UUUGGC |CUGCACGAA AGGCGUAAUG A-UUUGAGCG 4081 CUGUCUCGGA GAGAGACUCG |GUGAAAUA| GACUUGUCCC G(UG-AAGAU G)CGGACUAC 4141 CUACACUUGG ACAG-AAAGA CCCUAUGA|A GCUUGACUGU |AUCUUGGAA UU|GGGU-UC 4201 GGGCUUUUCU UGCGCAG-CC UAGGUGGGAG GCUUU-GAAG AUUUCCU(UC CG)GGGAAGU 4261 UGGAGCCAUC -AGUGAGAGA -CCACU|CU- GGAAGAGCU- AGAAUCCUAA -UGG-UG--A 4321 UCUU(----- --UGA-AUC) -AAGACACUU GACAGUUUCA GGUGGGCAGU UUAUCUG(GG 4381 G)CGGAU|AU C-UCC(UACA GCGCAAC)GG AGAU|G|U|G CAAAGGUUCU C|UCAGUCUG 4441 G--(ACGGAA A--)--UCAG ACAGC---GA |GU(G|UAAA G)GC-AAAA- --GAGAG--C 4501 UUGACUGUAA GAC(CAACAA )GUCGAGCAG GGGC(GAAA) GCCGGC|CUU AGUGAUCCGA 4561 CGGUG-CCG( UGUGGA)AGG |GCCGUCGCU CAAC|GGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUGA UCUUCCCCAA GA(GUCCAUA )UCGACGGGA AGGUUUGGCA CCUCGAUGUC 4681 |GGCU|U|AU CAC|AUCC|U GGAGCG(GCA GUA)CGUU-C C-AAGGGU|U GGGC(UGUUC 4741 )GCCCAUU-A AAGUGGUACA UGAGCUGGGU UCAAAAC|GU C(GUGA)GAC AGUUUGGUCC 4801 AUAUCC|GGU GUAGG|CGUU AGAGCAUU|G A|GAGGA-GC CUUCAG(UAG UAC(GAGA)G 4861 GA-UU)CUGA AAG|-GUAAG CCAAUAGUGU AUCGGU|UAU UUU(UC-CA) AAAGUAAACG 4921 CCGAGUAGCC ACGCUUAUA- G-GG-AUAAC UGCU(GAAAG CAUCUA)AGU AGGAAACCCA 4981 CCUC|AAGAU GAGUGCUCU| C-|------( ------)--- ----AU-CAG G|UC|GCGGC 5041 (AAGACAA)G CCGU-UA--- ---------- ---------- -----UAUAG |GCAUU|AGG 5101 UGUACAAUCA (GUAA)UGAU U|UUAGCCG| A|GAUGUACU AA-AGACCGA --UUG|AUUU 5161 UGAC-----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS chl.C.fran 5239 bp RNA RNA 11-JAN-191 DEFINITION Chlamydomonas frankii. ACCESSION No information KEYWORDS No information. SOURCE Chlamydomonas frankii. ORGANISM Chlamydomonas frankii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: Z17230 :X68905-X68909 BASE COUNT 840 a 587 c 825 g 640 t 2347 others ORIGIN 1 |--------- ---------- -----UCAAA UGAA---CUA AGGCGUACGG CGGAGA|CCU 61 -AGG|CACUC AG|AG|ACGA UGAAG-GG|C GCA(GAUA-- ----CC-)G| GCG-AAACGC 121 UUCGGG|GAG CU(------- -----G-GC- AACA------ -----)AGCU UUG-AUCCGA 181 AGAUC|CCCG AA-UAGG(GC AA)CCU|--- ----(----- --cuauaga) --------AC 241 UUCCUAUA(C A-AUUCA--U A)GUU-AGG- ---GAA-Gag g-caAC|CCA GUGAACU|GA 301 (AACA)UCUA AGU-AGCUGG AGGAAAAGAA AGC(AAAC-- )GCG-AU|UC CCGUAGUAGC 361 -(GGCGA)GC GA-ACCGGGA -UCAGCCUAA Accaguuu-- ---------- (-uaa---)- 421 ---------- -aaacuggug uagu-gggag gacuuaaaaa aaaauuaaaa auaa------ 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------/--- ---------- 781 ---------- -U-AGACGAA GCAG-C(U-- GAAU)C-CUG -CAC|C(AUA )GAUGG(-UG 841 AAAGU)-CCG GUAGUCua-- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- --aauuauuu uauuuuuugu caaauccc-- -GAGUAGCAU GGGA(CACGU 1141 GAAA)UCCCG UGUGAAUCCG CGAG(GACCA C)CUCGUAAG GCUAA-AUAC UCCUGAGUGA 1201 CCGAUAGCGA AAUAGUACA( GUGA)UGGAA CGGUGAAAA- GAACCCC(UG -UG-)GGGGA 1261 GUGAAAUAGA ACAUGAAACC GU---ACGCU GACAAGCAGU GGGAGGGU-u ---------- 1321 ------(--- gaaaa-)--- ---------- ----uGC--C -UGACCGCGU GCCU(AUUGA 1381 AG|A)AUGA| GCCGGCGACU UAUAGGGAGU GGC------- -UUGGUU-AA GGa-(----g 1441 uuaaa)-uCC -GGAGCCGAA -GC(-GAAA) GCA----AGU CU(GAA-UA) GGGCAaagu- 1501 ---------- ---------- ---------a ua-a-ucGUC ACUUCUUAUG GACCCGAACC 1561 CGGGUGAUCU AAUCAUGAC| CAGAUUGAAG CAUGGG(UCA C)ACCUUGUG GAGGAUCGAA 1621 CACACCAAU( GUUGAAAA)A UUGG|GUGAU GAGUUGUGAU UAG-GGGA(G AAAU)UCCAA 1681 UCGA-ACUCG GAGCUAGCUG GAUCUCCCCG -AAAUGCGU- (UGAG)-GCG CAGC|G-GUC 1741 ACGau----- ---------- ---------g |-agc-|uGU -CUAG|GGGU AA|-AGCUAC 1801 UGU-UUCGAU GC-GG|GCUG C(GAAA-)GU GGUACCA-AG UCGUG-GCAA ACUCAGAAUA 1861 |CUAGC-A-- ---------- ---------- aa-GCCu--- uc|-CGUGAG C-CAGUGAGU 1921 GAUGGGGC(G AUAAG)GUUC UG--UCACAA AAGGG(AAAC AG)CCCAGAU CACCAGCUAA 1981 GGC|CCCA-A AAUG-GUCA- CUAAGUG--G AAAAGGAUGU -GAAAAUGCU AA---AACAA 2041 CCAGGAGGUU UGC(UUAGAA GCA)GCCAC- CCU|--U(CA A)A|GAGUGC (GUAAUA)GC 2101 |UCACUGGU- AAAGCGUUCU UGC|GCCGAC AAUG-GCCGG GACU-----A AGUGA-CC|U 2161 |GCCGAAGCU |GUGA|UAUA A-------(a u/---aa(uu u)uuau---- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 -----/)--- -----UUAUA GGUAGGGGAG |CGUU-CCAC U-UUGGG-U- GAAGUCUUU- 2521 AU(GGAA)AU A-AGGAUGG| ACAAAGCGGA AGUGAGAAUG UCGGC|UUGA GUAACGAAAA 2581 CAUUGG(UGA GAA-U)CCAA UG|CCCCGAA AACCUA-AGG GUUCCUC-CA CUAGG(UUCG 2641 U)CC|GUGGG GGGUGAGU|C AG|GACCUAA GGCGAGGCC- --(-GAAA)- --GGCGUAGU 2701 CG-AUGG-UA AACAGG(UUA AUAUU)CCUG U|AC|uu-a- -uucua-uug ---------- 2761 ---------- ---------- --------uu gaac------ agagggacga ag--gaggcu 2821 aaacuagg|u -cu-ga-(-- --cuauggau u--------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- --------)- g-cagu-|gg aa-------- ---------g 3061 cgu-uuaggc ---------- ---------- ---------- ----guugau a-ggu-ag(a 3121 a-gaaa-ag) cu-|a-uccu uga------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ------gcu- 3301 aaggcgug-a ucc|-cua|- ---------- ---------- ---------- --------aa 3361 gacggc(--u uc-g--)guu guuuu----- ---------- ---------- -------uag 3421 -cuagu--ga ugcc-aaa-| cuuccaagaa aagcucu--a acauuuua-- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- --g-auag-a auaa|c|CUG UACCUGAAA- CC(GACACA) 3601 GG|---UAG- GU-UA-GUA- (-GAGAA)-U ACUAA-GG-G GC||GCGAGA GAACUCUCUC 3661 UAAGGAA-CU CGGCAAAUUG GCCCCGUAAC (UUCG)GAAG AAGGGGC|GC CUUU------ 3721 ---------- (-gaaa-)-- ---------- -----AAAGG U|C(GC-A)G UGACCAGGCC 3781 CAAG|CAACU GU(UUAUCAA AA)ACACAGG UCUCCG|CAA AGUC(GUAA) GACAAUAUAU 3841 GGGGGCUGAC GCC-UGCCCA GU|GCCGGAA GGUUAAGGAA GUUGGUUAgg gu------(G 3901 -UAA)---ac ---------- ---------- ---------- ---------u cGA-AGCUGA 3961 CGACCGAAGC C|CCGGUGAA C|GGC|GGUC GU(AACUAUA )ACGAUC|C( UAA)GGUAGC 4021 GAAAUUCAUU |GCCAAG(UA AGU)UUUGGC |CCGCACGAA AGGCGUAAUG A-UUUGGGCA 4081 CUGUCUCGGA GAGAGGCUCG |GUGAAAUA| GACUUGU-UC G(UG-AAGAU G)CGGACUAC 4141 CUACACCUGG ACAG-AAAGA CCCUAUGA|A GCUUGACUGU |AUCCUGGAA UU|GGGU-UU 4201 GGGCUUUUCU UGCGCAG-CC UAGGUGGGAG GCUAU-GAGU AGUACGU(UC CG)GCGUGCU 4261 AGGAGCCAUC -AUUGAGAGA -CCACU|CU- GGAAGAGCU- AGAAUCCUAA -UGG-CG--A 4321 UCCU(----- --UGA-AUC) -AGGACGCUU GACAGUUUCA GGUGGGCAGU UUGUUUG(GG 4381 G)CGAAC|AC C-UCC(UAAA AGGUAAC)GG AGGU|G|U|G CAAAGGUUCC C|UCAGCCUG 4441 G--(ACGGAA A--)--UCAG GCAUU---GA |GU(G|UAAA A)GC-AAAA- --GGGGG--C 4501 UUGACUGCAA GAC(CUACAA )GUCGAGCAG GGGC(GAAA) GCCGGC|UUU AGUGAUCCGA 4561 CGGUU-CCG( UGUGGA)AGG |GCCGUCGCU CAAC|GGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUGA UCUUCCCCAA GA(GUCCACA )UCGACGGGA AGGUUUGGCA CCUCGAUGUC 4681 |GGCU|C|AU CAC|AUCC|U CGGUCU(GCA GUA)GGUC-C G-AAGGGU|U GGGC(UGUUC 4741 )GCCCAUU-A AAGUGGUACG UGAGCUGGGU UCAAAAC|GU C(GUGA)GAC AGUUUGGUCC 4801 AUAUCC|GGU GUAAG|CGUU AGAAUAUU|G A|GGGGU-GC CUUUCU(UAG UAC(GAGA)G 4861 GA-UU)GGAA AGG|-ACAUG CCUAUGGUGU ACCUGU|UCU CGC(UC-CA) GCGGGAAACG 4921 CAGGGUAGCU ACGCAUGGU- U-UG-AGCAG CGCU(GACAG CAUAUA)AGU GCGAAACGUU 4981 CCCC|AAGAU GAAUAUUCU| CC|------( ------)--- ----AU-UAG G|CC|GCGGG 5041 (UAGACAA)U CCGU-UC--- ---------- ---------- -----GAUAG |GUAUC|ACG 5101 UGUAAGAGCA (GCAA)UGCU U|UAAGCUU| A|GAUAUACU AA-AGGCCAA --UUG|AUUU 5161 UGAC-----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS chl.C.geit 5239 bp RNA RNA 11-JAN-191 DEFINITION Chlamydomonas geitlerii. ACCESSION No information KEYWORDS No information. SOURCE Chlamydomonas geitlerii. ORGANISM Chlamydomonas geitlerii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: Z15153 :X68891,X68892 BASE COUNT 876 a 585 c 811 g 649 t 2318 others ORIGIN 1 |--------- ---------- -----UCAAA UGAA---UUA AGGCUUACGG CGGAGA|CCU 61 -AGG|CACCC AG|AG|ACGA AGAAG-GG|C GCA(GAUA-- ----CC-)G| GCG-AUACGC 121 UUCGGG|GAG CU(------- -----G-GU- AACA------ -----)AGCU UUG-AUCCGA 181 AGAUU|CCCG AA-UAGG(GC AA)CCU|--- ----(----- --ca--aga) --------AC 241 UUCCUAC-(A A-AUUCA--U A)AGU-AGG- ---AUA-Gag a-caAC|CCG GUGAAUU|GA 301 (AACA)UCUU AGU-AGCUGG AGGAAAAGAA AGC(AAAC-- )GCG-AU|UC CCGUAGUAGC 361 -(GGCGA)GC GA-ACCGGGA -UUAGCCUAA Accu------ ---------- (guaaaa-)- 421 ---------- -----agggg uagu-gggaa gacaaaaaau uucuaagagu gu-------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------/--- ---------- 781 ---------- -A-AGACGAA GCAG-C(U-- GAAU)C-CUG -CAC|C(AUA )GAUGG(-UG 841 AAAGU)-CCA GUAGUUau-- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------a aaaaucucua aagaaaaagu cauauccc-- -GAGUAGCAU GGGA(CACGU 1141 GGAA)UCCCG UGUGAAUCAG CGAG(GACCA C)CUCGUAAG GCUAA-AUAC UCCUGGGUGA 1201 CCGAUAGUGC AA-AGUACC( GCGA)GGGAA UGGUGAUAA- GAACCCC(UG -UA-)GGGGA 1261 GUGAAAUAGA ACAUGAAACC GU---AAGCU GACAAGCAGU GGGAGGAGcg g--------- 1321 -----c(--- uuu---)g-- ---------- ---ccGU--C -UGACCGCGU GCCU(GUUGA 1381 AG|A)AUGA| GCCGGCGACU UAUAGGAAGU GGC------- -AAGGUU-AA GGa-(----g 1441 ucaaa)-uCC -GGAGCCUUA -GC(-GAAA) GCG----AGU CU(UAA-UA) GGGCGaa--- 1501 ---------- ---------- ---------- -u-a-aaGUC ACUUUCUAUG GACCCGAACC 1561 CGGGUGAUCU AAUCAUGGC| CAGAAUGAAG CUUAGG(UAA C)ACUAAGUG GAGGUUCGAA 1621 CCGACCGAU( GUUGAAAA)A UCGG|CGGAU GAGCUGUGAU UAG-GGGA(G AAAU)UCCAA 1681 UCGA-ACUCG GAGCUAGCUG GAUCUCCCCG -AAAUGCGU- (UGAG)-GCG CAGC|G-GUG 1741 ACUau----- ---------- ---------g |-agc-|uAU -CUAG|AGGU AA|-AGCUAC 1801 UGU-UUCGAU GC-GG|GCUG C(GAAA-)GC GGUACCA-AG UCGUG-GCAA ACUCAGAAUA 1861 |CUAGA-U-- ---------- ---------- acaGCCu--- uc|-AGUCAA C-CAGUGAGA 1921 UUAGUUGG(G AUAAG)CUAA UU--AAUCAA GAGGG(AAAC AG)CCCAGAU CACCAGCUAA 1981 GGC|CCCU-A AAUG-GUCA- CUAAGUG--G AAAAGGAUGU -GAGAAUGCU GA---AACAA 2041 CCAGGAGGUU UGC(UUAGAA GCA)GCCAC- CCU|--U(GA A)A|GAGUGC (GUAAUA)GC 2101 |UCACUGGU- AAAGCGUUCU UGC|GCCGAC AAUG-GCCGG GACU-----A AGUGA-CC|U 2161 |GCCGAAGCU |GUGA|UAUU U-------(g a/---uuuau aau(uuaa)a uuauaaaaaa 2221 c--------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 -----/)--- -----AAAUA GGUAGGGGAG |CGUU-CCGU UAUCGGG-U- GAAGUUUUC- 2521 AC(GUAA)GU G-AGGAUGG| ACGAAGCGGA AGUGAGAAUG UCGGC|UUGA GUAACGAAAA 2581 CAUUGG(UGA GAA-U)CCAA UG|CCCCGAA AACCUA-AGG GUUCCUC-CA CUAGG(UUCG 2641 U)CC|AUGGG GGGUUAGU|C AG|GUCCUAA GGCUAGUUAG A-(-UUAU)- UCUAAGUCGU 2701 CG-AUGG-GA AACAGG(UUA AUAUU)CCUG U|AC|ugca- -uuuua-uug ---------- 2761 ---------- ---------- ---------g gaac------ caagggacga ag--gagacu 2821 aaacugaa|a -cu-gc-(-- --uucuggau u--------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- --------)- u-cagu-|gg aa-------- ---------g 3061 cau-uaaggu ---------- ---------- ---------- ----guugau a-gcu-ag(a 3121 a-uaaa-aa) cu-|a-ugcu uga------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ------gcu- 3301 gagaugug-a ucc|-cua|- ---------- ---------- ---------- ---------u 3361 gcuaua(--c uu-g--)uau agcg------ ---------- ---------- -------uag 3421 -ucagu--ga uguc-aaa-| cuuccaagaa aagcuug--a acaccaua-- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- aca-auaa-a auca|c|CUG UACCUGAAA- CC(GACACA) 3601 GG|---UAG- GU-UG-GUA- (-GAGAA)-U ACCAA-GG-G GC||GCGAGA GAACUCUCUC 3661 UAAGGAA-CU CGGCAAACUA GCCCCGUAAC (UUCG)GAAG AAGGGGC|AC CCUCucuu-- 3721 -------ucu (-uuaa-)aa a--------- uaagaGAGGG U|C(GC-A)G UGACUAGGCC 3781 CAGG|CAACU GU(UUAUCAA AA)ACACAGG UCUCCG|CAA AGUU(GUAA) AACAAUAUAU 3841 GGGGGCUGAC GCC-UGCCCA GU|GCCGGAA GGUUAAGGAA GUUGGUUAuu aa------(G 3901 -UAA)---uu ---------- ---------- ---------- ---------a aGA-AGCUGA 3961 CGACCGAAGC C|CCGGUGAA C|GGC|GGUC GU(AACUAUA )ACGAUC|C( UAA)GGUAGC 4021 GAAAUUCAUU |GCCAAG(UA AGU)UUUGGC |CUGCACGAA AGGCGUAAUG A-UCUGGGCG 4081 CUGUCUCGGA GAGAGACUCG |GUGAAAUA| GACUUGUCCC G(UG-AAGAU G)CGGACUAC 4141 CUACACCUGG ACAG-AAAGA CCCUAUGA|A GCUUGACUGU |AUCCUGGAA UU|GGGU-UC 4201 GGGCUUUUCU UGCGCAG-CC UAGGUGGGAG GCUAU-GAAG GUUCCCU(UC CG)GGGGAAU 4261 UUGAGCCAUC -AUUGAGAGA -CCACU|CU- GGAAGAGCU- AGAAUCCUAA -UGG-UG--A 4321 UCUU(----- --UGA-AUC) -AAGACACUU GACAGUUUCA GGUGGGCAGU UUAUCUG(GG 4381 G)CGGAU|GC C-UCC(UAAA GCGUAAC)GG AGGC|G|U|G CAAAGGUUCU C|UCAGUCUG 4441 G--(ACGGAA A--)--UCAG ACAUU---GA |GU(G|CAAA G)GC-AAAA- --GAGAG--C 4501 UUGACUGUAA GAC(CAACAA )GUCGAGCAG GGGC(GAAA) GCCGGC|CUU AGUGAUCCGA 4561 CGGUG-CCG( UGUGGA)AGG |GCCGUCGCU CAAC|GGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUGA UCUUCCCCAA GA(GUUCACA )UCGACGGGA AGGUUUGGCA CCUCGAUGUC 4681 |GGCU|C|AU CAC|AUCC|U GGAGCG(GCA GUA)CGUU-C C-AAGGGU|U GGGC(UGUUC 4741 )GCCCAUU-A AAGUGGUACG UGAGCUGGGU UCAAAAC|GU C(GUGA)GAC AGUUUGGUCC 4801 AUAUCC|GGU GUAGG|CGCU AGAGCAUU|G A|GAGGA-GC CUUCGA(UAG UAC(GAGA)G 4861 GAUUU)UCGA AAG|-GUAAG CCAAUAGUGU AUCGGU|UAU UUU(UC-CA) AAAGUAAACG 4921 CCGAGUAGCC ACGCUUAUA- G-GG-AUAAC UGCU(GAAAG CAUCUA)AGU AGGAAACCCA 4981 CCUC|AAGAU GAGUGCUCU| CC|------( ------)--- ----AU-UAG G|UC|GCGGC 5041 (AAGACAA)G CCGU-UU--- ---------- ---------- -----AAUAG |GCAUU|AGG 5101 UGUACAAUCA (GUGA)UGGU U|UUAGCCG| A|GAUGUAGU AA-AGAUCGA --UUG|AUUU 5161 UGAC-----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS chl.C.gela 5239 bp RNA RNA 11-JAN-191 DEFINITION Chlamydomonas gelatinosa. ACCESSION No information KEYWORDS No information. SOURCE Chlamydomonas gelatinosa. ORGANISM Chlamydomonas gelatinosa. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: Z15151 BASE COUNT 841 a 600 c 830 g 633 t 2335 others ORIGIN 1 |--------- ---------- -----UCAAA UGAA---CUA AGGCGUACGG UGGAGA|CCU 61 -AGG|CACUC AG|AG|ACGA AGAAG-GG|C GCA(GAUA-- ----CC-)G| GCG-AUACGC 121 UUCGGG|GAG CU(------- -----G-GC- AACA------ -----)AGCU UUG-AUCCGA 181 AGAUU|CCCG AA-UAGG(GC AA)CCU|--- ----(----- --ca-uaga) --------AC 241 UACCUAUA(U A-AUUCA--U A)GUU-AGG- ---UAA-Gag g-caAC|CCA GUGAACU|GA 301 (AACA)UCUA AGU-AGCUGG AGGAAAAGAA AGC(AAAC-- )GCG-AU|UC CCGUAGUAGC 361 -(GGCGA)GC GA-ACCGGGA -ACAGCCUAA Accauag--- ---------- (ccuccgc)- 421 ---------- --cuaugggg ucgu-gggag gacuaaauuu uaaaaaauaa gguuuauaaa 481 uauuau---- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------/--- ---------- 781 ---------- -A-AGGUGAA GCAG-C(U-- GAAU)C-CUG -CAC|C(AAA )GAUGG(-UG 841 AAAGU)-CCA GUAACUaa-- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- aagaauuuua uaaucuaagu cuaauccc-- -GAGUAGCAU GGGA(CACGU 1141 GAAA)UCCCG UGUGAAUCAG CGAG(GACCA C)CUCGUAAG GCUAA-AUAC UCCUGAGUGA 1201 CCGAUAGCGA AAUAGUACC( ACGA)GGGAA AGGUGAAAA- GAACCCC(UG -UU-)GGGGA 1261 GUGAAAUAGA ACAUGAAACC GU---AUGCU GACAAGCAGU AGGAGCAG-C ---------- 1321 ------(--- aaag--)--- ---------- ----GCU--G -UGACUGCGU GCCU(GUUGA 1381 AG|A)AUGA| GCCGGCGACU UAUAGGAAGU GGC------- -UAGGUU-AA GGg-(----g 1441 ugaua)-cCC -GAAGCCAUA -GC(-GAAA) GCG----AGU CU(GAA-UA) GGGCGu---- 1501 ---------- ---------- ---------- -c-u-ucGUC ACUUCUUAUG GACCCGAACC 1561 CGGGUGAUCU AACCAUGAC| CAGGAUGAAG CUUGGG(UAA A)UCCAAGUG GAGGUCCGAA 1621 CCGACCGAU( GUUGAAAA)A UCGG|CGGAU GAGUUGUGGU UAG-GGGA(G AAAU)UCCAA 1681 UCGA-ACUCG GAGCUAGCUG GAUCUCCCCG -AAAUGCGU- (UGAG)-GCG CAGC|G-GUA 1741 ACGau----- ---------- ---------g |-aac-|uAU -CUUG|GGGU AA|-AGCUAC 1801 UGU-UUCGAU GC-GG|GCUG C(GAAA-)GU GGUACCA-AG UCGUG-GCAA ACUCAGAAUA 1861 |CAAGA-U-- ---------- ---------- au-GUCu--- uc|-CGUGAA C-CAGUGAGA 1921 CAGUGGGG(G AUAAG)CUUC AU--UGUCAA GAGGG(AAAC AG)CCCAGAU CACCAGCUAA 1981 GGC|CCCU-A AAUG-GUCA- CUAAGUG--G AAAAGGAUGU -GAGAAUGCU GA---AACAA 2041 CCAGGAGGUU UGC(UUAGAA GCA)GCCAC- CCU|--U(CA A)A|GAGUGC (GUAAUA)GC 2101 |UCACUGGU- AAAGCGUUCU UGC|GCCGAU AAUG-GCCGG GACU-----A AGUGA-CC|U 2161 |GCCGAAGCU |GUGG|UAUA A-------(u u/----ua(c uu)uaaa--- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 -----/)--- -----UUAUA GGUAGGGGAG |CGUA-CCGU ACUCGGG-U- GAAGUUUUC- 2521 AC(GAAA)GU G-GUGAUGG| ACGAUACGGU AGUGAGAAUG UCGGC|UUGA GUAACGAAAA 2581 CAUUGG(UGA GAA-U)CCAA UG|CCCCGAA AACCUA-AGG GUUCCUC-CA CUAGG(UUCG 2641 U)CC|AUGGG GGGUUAGU|C AG|GACCUAA GACCAGGCC- --(-AAAA)- --GGCGUCGU 2701 CG-AUGG-AA AACAGG(UUA AUAUU)CCUG U|AC|ua-g- -uuaaa-uua ---------- 2761 ---------- ---------- --------gg auc------- ugagggacga ag--gaggcu 2821 aaacuaga|a -cu-gu-(-- --uuuuggau u--------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- --------)- g-cagu-|gg aa-------- ---------g 3061 cgu-uuagac ---------- ---------- ---------- ----guugag a-gau-ag(a 3121 a-caaa-ag) cu-|a--ucu uga------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ------gug- 3301 gagacgug-a ucc|-cua|- ---------- ---------- ---------- --------uu 3361 ugaugg(--u uc-g--)ccg ucgag----- ---------- ---------- -------uag 3421 -cuagu--ga uguc-aua-| cuuccaagaa aagcuca--u acauccuua- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- aua-auuu-a auua|c|CUG UACCUGAAA- CC(GACACA) 3601 GG|---UAG- GU-UG-GUA- (-GAGAA)-U ACCAA-GG-G GC||GCGAGA GAACUCUCUC 3661 UAAGGAA-CU CGGCAAACUG GCCCCGUAAC (UUCG)GAAG AAGGGGC|GC CCUCu----- 3721 ---------- (-gcaa-)-- ---------- ----gGGGGG U|C(GC-A)G UGACCAGGCC 3781 CAGG|CAACU GU(UUACCAA AA)ACACAGG UCUCCG|CAA AGUC(GUAA) GACAAUAUAU 3841 GGGGGCUGAC GCC-UGCCCA GU|GCCGGAA GGUUAAGGAA GUUGGUUAuu cc------(G 3901 -UAA)---gg ---------- ---------- ---------- ---------a aGA-AGCUGA 3961 CGACCGAAGC C|CCGGUGAA C|GGC|GGUC GU(AACUAUA )ACGAUC|C( UAA)GGUAGC 4021 GAAAUUCAUU |GUCGAG(UA AGU)UUCGAC |CUGCACGAA AGGCGUAAUG A-UCUGGGCG 4081 CUGUCUCGGA GAGAGGCUCG |GUGAAAUA| GACUUGUCCC G(UG-AAGAU G)CGGACUAC 4141 CUACACCUGG ACAG-AAAGA CCCUAUGA|A GCUUGACUGU |AUCUUGGAA UU|GGGU-UU 4201 GGGCUUUUCU UGCGCAG-CC UAGGUGGGAG GCUAU-GAAG GUUACCU(UC CG)GGGUAAU 4261 CAGAGCCGUC -AUUGAGAGA -CCACU|CU- GGAAGAGCU- AGAAUCCUAA -UGG-GG--A 4321 UCCU(----- --UGA-AUC) -AGGACCCUU GACAGUUUCA GGUGGGCAGU UUAUUUG(GG 4381 G)CGAAU|GC C-UCC(UAAA AGGUAAC)GG AGGC|G|U|G CAAAGGUUCC C|UCAGUCUG 4441 G--(ACGGAA A--)--UCAG ACAUU---GA |GU(G|UAAA G)GC-AAAA- --GGGAG--C 4501 UUGACUGCAA GAC(CUACAA )GUCGAGCAG GGGC(GAAA) GCCGGC|CUU AGUGAUCCGA 4561 CGGUG-CCG( CGUGGA)AGG |GCCGUCGCU CAAC|GGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUGA UCUUCCCCAA GA(GUUCACA )UCGACGGGA AGGUUUGGCA CCUCGAUGUC 4681 |GGCU|C|AU CAC|AUCC|U CGGUCU(GUA GUA)GGUC-C G-AAGGGU|U GGGC(UGUUC 4741 )GCCCAUU-A AAGUGGUACG UGAGCUGGGU UCAAAAC|GU C(GUGA)GAC AGUUUGGUCC 4801 AUAUCC|GGU GUAGG|CGUU AGAGCAUU|G A|GAGUA-GC CCUUCA(UAG UAC(GAGA)G 4861 GA-CC)UGAA GGG|-ACAUG CCAAUUGUGU ACCAGU|UCU CAC(UC-CA) GUGGGAAACG 4921 CUGGGUAGCU ACGCAUGGA- U-AG-AUAAC UGCU(GAAAG CAUCUA)AGU AGGAAACUAA 4981 ACUC|AAGAU GAGUGCUCU| C-|------( ------)--- ----UA-A-G G|CC|GCGGC 5041 (UAGACAA)G CCGU-UA--- ---------- ---------- -----UAUAG |GUAUC|AGG 5101 UGUACAGUCA (GCAA)UGGC U|UCAGCCG| A|GAUAUACU AA-AGGCCGU --UUG|AUUU 5161 UGAC-----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS chl.C.humi 5239 bp RNA RNA 11-JAN-191 DEFINITION Chlamydomonas humicola. ACCESSION No information KEYWORDS No information. SOURCE Chlamydomonas humicola. ORGANISM Chlamydomonas humicola. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: Z17235 :X68921,X68922 BASE COUNT 853 a 588 c 821 g 648 t 2329 others ORIGIN 1 |--------- ---------- -----UCAAA UGAA---CUA AGGCAUAUGG UGGAGA|CCU 61 -AGG|CACUC AG|AG|ACGA UGAAG-GG|C GCA(GAUA-- ----CC-)G| GCG-AAACGC 121 UUCGAG|GAG CU(------- -----G-GC- AACA------ -----)AGCU UUG-AUCCGA 181 AGAUC|CCCG AA-UAGG(GC AA)CCU|--- ----(----- --gu--aaa) --------AC 241 UUCCAACA(G A-AUUCA--U A)UGU-UGG- ---AAA-Gag g-caAC|CCA GUGAAUU|GA 301 (AACA)UCUU AGU-AGCUGG AGGAAAAGAA AGC(AAAC-- )GCG-AU|UC CCGUAGUAGC 361 -(GGCGA)GC GA-ACCGGGG -UUAGCCUAA Acgauuau-- ---------- (-uua---)- 421 ---------- -guaaucggg uagu-gggaa gacaaguucu aucuaaaaau agaaacucau 481 aaacaauuca aa-------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------/--- ---------- 781 ---------- -A-AAACGAA ACAG-C(U-- GAAU)C-CUG -UAC|C(AUA )GAUGG(-UG 841 AAAGU)-CCA GUAGUUgu-- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- --aaaaugaa acaaaaaugu cuuauccc-- -GAGUAGCAU GGGA(CACGU 1141 GGAA)UCCCG UGUGAAUCAG CGAG(GACCA C)CUCGUAAG GCUAUAAUAC UCCUGAGUGA 1201 CCGAUAGUGA AAGAGUACC( GCGA)GGGAA AGGUGAAAA- GUACCCC(CG -UA-)GGGGA 1261 GUGAAAUAGA ACAUGAAACC GU---AUGCU GACAAGCAGU GGGAGGGG-U ---------- 1321 ------(--- uaug--)--- ---------- ----GCC--C -UGACCGCGU GCCU(GUUGA 1381 AG|A)AUGA| GCCGGCGACU UAGAGGGAGU GGCU-----U -AAGGUU-AA GGa-(----g 1441 uugua)-uCC -GGAGCCAAC -GC(-GAAA) GCG----AGU CU(GAA-UA) GGGCGu---- 1501 ---------- ---------- ---------- -u-u-aaGUC AUUUCCUCUG GACCCGAACC 1561 CGGGUGAUCU AAUCAUGAC| CAGGAUGAAG CUUGGG(UAA C)ACUAAGUG GAGGUCCGAA 1621 CCGACCGAU( GUUGAAAA)A UCGG|CGGAU GAGUUGUGAU UAG-GGGA(G AAAU)UCCAA 1681 UCGA-ACUCG GAGCUAGCUG GAUCUCCCCG -AAAUGCGU- (UGAG)-GCG CAGC|G-GCA 1741 ACGau----- ---------- ---------g |-agc-|uAU -CAUG|GGGU AA|-AGCUAC 1801 UGU-UUCGAU GC-GG|GCUG C(GAAA-)GC GGUACCA-AG UCGUG-GCAA ACUCAGAAUA 1861 |CAUGA-U-- ---------- ---------- acuGUUU--- ac|-CGUAAG C-CAGUGAGA 1921 CUGUCGGU(G AUAAG)AUCG AU--AGUCAA GAGGG(AAAC AG)CCCAGAU CACCAGCUAA 1981 GGC|CCCU-A AAUG-GUUA- CUAAGUG--G AAAAGGAUGU -GAGAAUGCU GA---AACAA 2041 CCAGGAGGUU UGC(UUAGAA GCA)GCCAC- CCU|--U(GA A)A|GAGUGC (GUAAUA)GC 2101 |UCACUGGU- AAAGCGUUCU UGC|GCCGAC AAUG-GCCGG GACU-----A AGUAA-CC|U 2161 |GCCGAAGCU |GUGA|GAUU U-------(c u/----(uuu uu)ag----- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 -----/)--- -----AGAUC GGUAGGGGAG |CGUU-CCGU UCUUGGG-U- GAAGUUUUA- 2521 AU(GUAA)AU U-AGGAUGG| ACAAAACGGA AGUGAGAAUG UCGGC|UUGA GUAACGAAAA 2581 CAUUGG(UAA GAA-U)CCAA UG|CCCCGAA AACCGU-UGG GUUCCUC-CA CUAGG(CUCG 2641 U)CC|AUGGG GGGUUAGU|C AG|GUCCUAA GGCUAGGCCG A-(-AAAA)- UCGGCGUCGU 2701 CG-AUGG-CA AACAGG(UUA AUAUU)CCUG U|AC|ug-a- -uuuua-uug ---------- 2761 ---------- ---------- ---------g gaa------- caagugacga ag--gaggcu 2821 aaacuaga|a -cu-gc-(-- --uuguggau u--------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- --------)- u-cagu-|gg aa-------- ---------g 3061 cgu-uuaggu ---------- ---------- ---------- ----guugag a-guu-ag(a 3121 a-aaaa-ag) cu-|a-uacu cga------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ------acu- 3301 aagacgug-a ucc|-gua|- ---------- ---------- ---------- ---------a 3361 guucgu(--g ca-a--)acg aauu------ ---------- ---------- -------uau 3421 -cuagu--ga uguc-aaa-| cuuccaagaa aagcuug--a gcuccuua-- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- aca-auaa-a auca|c|CUG UACCUAAAA- CC(GACACA) 3601 GG|---UAG- GU-UG-GUA- (-GAGAA)-U ACCAA-GG-G GC||GCGAGA GAACUCUCUC 3661 UAAGGAA-CU CGGCAAACUG GCCCCGUAAC (UUCG)GAAG AAGGGGC|GC CCUU------ 3721 ---------- (-uaaca)-- ---------- -----AAGGG U|C(GC-A)G UGACCAGGCC 3781 CAGG|CGACU GU(UUAUCAA AA)ACACAGG UCUCCG|CAA AGUC(GUAA) GACAAUAUAU 3841 GGGGGCUGAC GCC-UGCCCA GU|GCCGGAA GGUUAAGGAA GUUGGUUAuu ag------(U 3901 -UUA)---cu ---------- ---------- ---------- ---------a aGA-AGCUGA 3961 CGACCGAAGC C|CCGGUGAA C|GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC 4021 GAAAUUCAUU |GUCGAG(UA AGU)UUCGAC |CUGCACGAA AGGCGUAACG A-UCUGGGCG 4081 CUGUCUCGGA GAGAGGCUCG |GUGAAAUA| GACUUGUCCC G(UG-AAGAU G)CGGACUAC 4141 UUGCACCUGG ACAG-AAAGA CCCUAUGA|A GCUUGACUGU |AUCCUGGAA UU|GGUU-UC 4201 GGGCUUUUCU UGCGCAG-CC UAGGUGGGAG GCUAU-GAAG GUUCUCU(UC CG)GGAGAAC 4261 AUGAGCCGUC -AUUGAGAGA -CCACU|CU- GGAAGAGCU- AGAAUCCUAA -UGG-UG--A 4321 UCUU(----- --UGA-AUC) -AAGACACUU GACAUUUUCA GGUGGGCAGU UUAUCUG(GG 4381 G)CGGAU|GC C-UCC(UAAA GUGUAAC)GG AGGU|G|U|G CAAAGGUUCC C|UCAGCCUG 4441 G--(ACGGAA A--)--UCAG GCCUU---GA |GU(G|UAAA G)GC-AAAA- --GGGAG--C 4501 UUGACUGCAA GAC(CUACAA )GUCGAGCAG GGGC(GAAA) GCCGGC|CUU AGUGAUCCGA 4561 CGGUG-CCG( UGUGGA)AGG |GCCGUCGCU CAAC|GGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUGA UCUUCCCCAA GA(GUUCACA )UCGACGGGA AGGUUUGGCA CCUCGAUGUC 4681 |GGCU|C|AU CGC|AUCC|U GGAGCG(GUA GUA)CGUU-C C-AAGGGU|U GGGC(UGUUC 4741 )GCCCAUU-A AAGCGGUACG UGAGCUGGGU UCAGAAC|GU C(GUGA)GAC AGUUCGGUCC 4801 AUAUCC|GGU GUAAG|CGCU GGAACUUU|G A|GAGGA-GU AUUUCA(UAG UAC(GAGA)G 4861 GA-CC)UGAA AUA|-ACAUG CCAAUGGUAU ACCAGU|UAU UCU(UC-CA) AGGGUAAACG 4921 CUGGGUAGCU AUGCAUGGA- GUAA-AUAAG AGCU(GACAG CAUCUA)AGU UCGAAGUUCA 4981 CCUC|AAGAU GAGAGUUCC| CC|------( ------)--- ----AU-UAG G|UC|GCAGA 5041 (UAGACAA)U CUGU-UU--- ---------- ---------- -----GAUAG |GACUC|AGG 5101 UGUAAGGCUA (GUAA)UAGU U|UCAGCUG| A|GAGUUACU AA-AGACCAA --UUG|AUUU 5161 UGAU-----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS chl.C.indi 5239 bp RNA RNA 11-JAN-191 DEFINITION Chlamydomonas indica. ACCESSION No information KEYWORDS No information. SOURCE Chlamydomonas indica. ORGANISM Chlamydomonas indica. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: X68893-X68898,Z17228 BASE COUNT 942 a 625 c 856 g 704 t 2112 others ORIGIN 1 |--------- ---------- -----UCAAA UGAA---CUA AGGCUUACGG CGGAGA|CCU 61 -AGG|CACCC AG|AG|ACGA UGAAG-GG|C GCA(GAUA-- ----CC-)G| GCG-AAACGC 121 UUCGGG|GAA CU(------- -----G-GC- AACG------ -----)AGUU UUG-AUCCGA 181 AGAUC|CCCG AA-UAGG(GC AA)CCU|--- ----(----- --ca--aga) --------AC 241 UACCUAU-(G A-AUUCA--U A)UGU-AGG- --AU-A-Gag a-caAC|CCA GUGAAUU|GA 301 (AACA)UCUU AGU-AACUGG CGGAAAAGAA AGC(AAAA-- )GCG-AU|UC CCGUAGUAGC 361 -(GGCGA)GC GA-ACCGGGA -ACAGCCUAA Accu------ ---------- (guaaaa-)- 421 ---------- -----agggg uagu-gggaa gaguaaaucg gau-----aa caaucgauaa 481 aaagcaauau u--uuuaaua uugcgauuua aaaaacugga ggcuuugcca cagauauaau 541 uaaaucacgu aa-------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------/--- ---------- 781 ---------- -U-AAACGAA GCAG-C(U-- GAAU)C-CUG -CAC|C(AUA )GAUGG(-UG 841 AAAGU)-CCA GUAGUUga-- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- -----aaacg caaaaaaacu caaauccc-- -GAGUAGCAU GGGA(CACGU 1141 GGAA)UCCCG UGUGAAUCAG CGAG(GACCA C)CUCGUAAG GCUAA-AUAC UCCUGGGUGA 1201 CCGAUAGUGC AA-AGUACC( GCGA)GGGAA UGGUAAAAA- GAACCCC(UG -UA-)GGGGA 1261 GUGAAAUAGA ACAUGAAACC GU---AAGCU GACAAGCAGU GGGAGGUU-C ---------- 1321 ------(--- aaaa--)--- ---------- ----GGA--C -UGACCGCGU GCCU(GUUGA 1381 AG|A)AUGA| GUCUGCGACU UAUAGGGAGU GGC------- -AAGGUU-AA GGa-(----g 1441 uaaaa)-uCC -GGAGCCUUA -GC(-GAAA) GCG----AGU CU(UAA-UA) GGGCGa---- 1501 ---------- ---------- ---------- -c-a-aaGUC ACUUCUUAUG GACCCGAACC 1561 CGGGUGAUCU AUUCAUGGC| CAGGAUGAAG CGAGGG(UAA C)ACUUCUUG GAGGUCCGAA 1621 CCCACCGAU( GUUGAAAA)A UCGG|GGGAU GAGCUGUGAA UAG-GGGA(G AAAU)UCCAA 1681 UCGA-ACUCG GAGCUAGCUG GAUCUCCCCG -AAAUGCGU- (UGAG)-GCG CAGC|G-GUG 1741 ACUau----- ---------- ---------g |-agc-|uAU -CUAG|AGGU AA|-AGCGAC 1801 UGU-UUCGAU GC-GG|GCUG C(GAAA-)GC GGUACCA-AG UCGUG-GCAA ACUCAGAAUA 1861 |CUAGA-U-- ---------- ---------- auaGCCu--- uc|-AGUCAA C-CAGUGAAA 1921 CACGUCGG(G AUAAG)CUGA UG--UGUUAA GAGGG(AAAC AG)CCCAGAU CACCAGCUAA 1981 GGC|CCCU-A AAUGAGUCA- CUAAGUG--G AGAAGGAUGU -GAUGAUGCU AA---AACAA 2041 CCAGGAAGUU UGC(UUAGAA GCA)GCCAC- CUU|--U(GA A)A|GAGUGC (GUAAUA)GC 2101 |UCACUGGU- AAAGCGUUGU UGC|GCCGAA AAUG-GCCGG GACU-----A AGUGA-CC|U 2161 |GCCGAAGCU |GUGA|UAUU U-------(u u/---uauaa uuuuaaaauu uaugcuacac 2221 aucccuguaa cgcuucaugc gucaagcuag ggcgcauuuu cg-caccg-c gaaacugcga 2281 cacguuguac guagacccac uaaagcgcau cagcgcaaaa aagagugggu guuugauuau 2341 uaaa------ ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 -----/)--- -----GAAUA GGUAGGGGAG |CGUU-CUCU UAUCGGG-U- GAAGUUUUC- 2521 AC(GGAA)GU G-AGGAUGG| ACGAAUGAGA AGCGAUAUUG UAGAU|UUGA GUAACGAAUA 2581 CAUUGG(UGA GAA-U)CCAA UG|CCCCGAA AACCUA-AGG GUUCCUC-CA CUAGG(UUCG 2641 U)CC|AUGGG GGGUGAGU|C AG|GUCCUAA GGCUAGUUCG A-(-UAAA)- UCGAAGUCGU 2701 CG-AUGG-GA AACAGG(UUA AUAUU)CCUG U|AC|ug-a- -uuuua-uug ---------- 2761 ---------- ---------- ---------g gaac------ caagugacga ag--gagacu 2821 aaacagaa|a -cu-gc-(-- --uacuggau u--------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- --------)- u-cagu-|gg aa-------- ---------g 3061 cau-uaaggu ---------- ---------- ---------- ----guugag a-gcu-ag(a 3121 a-caaa-aa) cu-|a-ugcu uga------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ------gcu- 3301 gagaugug-a ucc|-cuc|- ---------- ---------- ------uuuu auggug-auu 3361 uaugcu(--u uc-g--)ggu augauuccac cauauug--- ---------- -------gag 3421 -ucugu--ga uguc-aaa-| cuuccaagaa aagcuug--a acaccuua-- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- aca-auaa-a guca|c|CUG UACCUGAAA- CC(GACACA) 3601 GG|---UAG- GU-UG-GUA- (-GAGUA)-U ACCAA-GG-G GC||GCGAGA GAACUCUCUC 3661 UAAGGAA-CU CGGCAAACUG GCCCCGUAAC (UUCG)GAAG AAGGGGC|GC CCUUuuu--- 3721 -------auu (-uaac-)ga u--------- -aaaaAAGGG U|C(GC-A)G UGUCCAGGCU 3781 CAAG|CAACU GU(UUAUCAA AA)ACACAGG UCUCCG|CAA AGUC(GUAA) GACGAUAUAU 3841 GGGGGCUGAC GCC-UGCCCA GU|GCCGGAA GGUUAAGGAA GUUGGUUAuu ga------(G 3901 -UAA)---uc ---------- ---------- ---------- ---------a aGA-AGCUGA 3961 CGACUGAAGC C|CCGGUGAA C|GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC 4021 GAAAUUCAUU |GCCAAG(UA AGU)UUUGGC |CUGCACGAA AGGCGUAAUG A-UUUGAGCG 4081 CUGUCUCGGA GAGAGACUCG |GUGAAAUA| GACUUGUCCC G(UG-AAGAU G)CGGACUAC 4141 CUACACUUGG ACAG-AAAGA CCCUAUGA|A GCUUGACUGU |AUCUUGGAA UU|GGGU-UC 4201 GGGCUUUUCU UGCGCAG-CC UAGGUGGGAG GCUUU-GAAG AUUUCCU(UC CG)GGGAAGU 4261 UGGAGCCAUC -AGUGAGAGA -CCACU|CU- GGAAGAGCU- AGAAUCCUAA -UGG-UG--A 4321 UCUU(----- --UGA-AUC) -AAGACACUU GACAGUUUCA GGUGGGCAGU UUAUCUG(GG 4381 G)CGGAU|AU C-UCC(UACA GCGCAAC)GG AGAU|G|U|G CAAAGGUUCU C|UCAGUCUG 4441 G--(ACGGAA A--)--UCAG ACAGC---GA |GU(G|UAAA G)GC-AAAA- --GAGAG--C 4501 UUGACUGUAA GAC(CAACAA )GUCGAGCAG GGGC(GAAA) GCCGGC|CUU AGUGAUCCGA 4561 CGGUG-CCG( UGUGGA)AGG |GCCGUCGCU CAAC|GGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUGA UCUUCCCCAA GA(GUCCAUA )UCGACGGGA AGGUUUGGCA CCUCGAUGUC 4681 |GGCU|U|AU CAC|AUCC|U GGAGCG(GCA GUA)CGUU-C C-AAGGGU|U GGGC(UGUUC 4741 )GCCCAUU-A AAGUGGUACA UGAGCUGGGU UCAAAAC|GU C(GUGA)GAC AGUUUGGUCC 4801 AUAUCC|GGU GUAGG|CGUU AGAGCAUU|G A|GAGGA-GC CUUCAG(UAG UAC(GAGA)G 4861 GA-UU)CUGA AAG|-GUAAG CCAAUAGUGU AUCGGU|UAU UUU(UC-CA) AAAGUAAACG 4921 CCGAGUAGCC ACGCUUAUA- G-GG-AUAAC UGCU(GAAAG CAUCUA)AGU AGGAAACCCA 4981 CCUC|AAGAU GAGUGCUCU| C-|------( ------)--- ----AU-CAG G|UC|GCGGC 5041 (AAGACAA)G CCGU-UA--- ---------- ---------- -----UAUAG |GCAUU|AGG 5101 UGUACAAUCA (GUAA)UGAU U|UUAGCCG| A|GAUGUACU AA-AGACCGA --UUG|AUUU 5161 UGAC-----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS chl.C.iyen 5239 bp RNA RNA 11-JAN-191 DEFINITION Chlamydomonas iyengarii. ACCESSION No information KEYWORDS No information. SOURCE Chlamydomonas iyengarii. ORGANISM Chlamydomonas iyengarii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: Z15148 :X68885,X68886 BASE COUNT 861 a 604 c 841 g 660 t 2273 others ORIGIN 1 |--------- ---------- -----UCAAA UGAA---UUA AGGCGUACGG UGGAGA|CCU 61 -AGG|CACUC AG|AG|ACGA AGAAG-GG|C GCA(GAUA-- ----CC-)G| GCG-AUACGC 121 UUCGGG|GAG CU(------- -----G-GC- AACA------ -----)AGCA UUG-AUCCGG 181 AGAUU|CCCG AA-UAGG(GC AA)CCU|--- ----(----- --ca-uaga) --------AC 241 UACCUAUA(U A-AUUCA--U A)GUU-AGG- ---UAA-Gag g-caAC|CCA GUGAACU|GA 301 (AACA)UCUA AGU-AGCUGG AGGAAUAGAA AGC(AAAC-- )GCG-AU|UC CCGUAGUAGC 361 -(GGCGA)GC GA-ACCGGGA -ACAGCCUAA Accuacccc- ---------- (auuu---)- 421 ---------- gggguggggg ucgu-gggag gacagcgccc cuagcgaaaa aagcaaggg- 481 gcgcaauuua uaaaaguuuu a--------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------/--- ---------- 781 ---------- -A-AUACGAA GCAG-C(U-- GAAU)C-CUG -CAC|C(AUA )GAUGG(-UG 841 AAAGU)-CCA GUAGUAaa-- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- -------aca aaauuuaauu acccaaua-u uaaaccaaau 1081 uuuauuuggu uuaauauuga ugugcaaugu cuaauccc-- -GAGUAGCAU GGGA(CACGU 1141 GAAA)UCCCG UGUGAAUCAG CGAG(GACCA C)CUCGUAAG GCUAA-AUAC UCCUGAGUGA 1201 CCGAUAGCGA AAUAGUACC( ACGA)GGGAA AGGUGAAAA- GAACCCU(UG -UU-)AGGGA 1261 GUGAAAUAGA ACAUGAAACC GU---AUGCU GACAAGCAGU GGGAGCAA-G ---------- 1321 ------(--- uaug--)--- ---------- ----CUU--G -UGACCGCGU GCCU(GUUGA 1381 AG|A)AUGA| GCCGGCGACU UAUAGGAAGU GGC------- --AGGUU-AA GGa-(----g 1441 uuaaa)-uCC -GGAGCCUAA -GC(-GAAA) GCA----AGU CU(GAA-UA) GGGC------ 1501 ---------- ---------- ---------- -u-a-caGUC ACUUCUUAUG GACCCGAACC 1561 CGGGUGAUCU AACCGUGGC| CAGGAUGAAG CUUGGG(UAA C)ACCAAGUG GAGGUCCGAA 1621 CCGACCGAU( GUUGAAAA)A UCGG|CAGAU GAGCUGCGGU UAG-CGGA(G AAAU)UCCAA 1681 UCGA-ACUCG GAGCUAGCUG GAUCUCCCCG -AAAUGCGU- (UGAG)-GCG CAGC|G-GUA 1741 ACGau----- ---------- ---------g |-aac-|gAU -CUUG|GGGU AA|-AGCGAC 1801 UGU-UUCGAU GC-GG|GCUG C(GAGA-)GU GGUACCA-AG UCGUG-GCAA ACUCAGAAUA 1861 |CAAGA-U-- ---------- ---------- au-GUUU--- uc|-CGUAAA C-CAGUGAGA 1921 CAGUGGGG(G AUAAG)CUUC AU-AUGUCAA GAGGG(AAAC AG)CCCAGAC CACCAGCUAA 1981 GGC|CCCU-A AAUG-GUCA- CUAAGUG--G AAAAGGAUGU -GAGAAUGCU GA---AACAA 2041 CCAGGAAGUU CGC(UUAGAA GCA)GCUAU- CCU|--U(AA A)A|GAGUGC (GUAAUA)GC 2101 |UCACUGGU- AAAGCGUUCU UGC|GCCGAU AAUG-GCCGG GACU-----A AGUGA-CC|U 2161 |GCCGAAGCU |GUGG|UAUA U-------(u u/----ua(u ua)uaaa--- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 -----/)--- -----UUAUA GGUAGGGGAG |CGUU-CCGU UCUCGGG-U- GAAGUUUUC- 2521 AC(GUAA)GU G-GGGAUGG| ACGGUACGGA AGUGAGAAUG UUGGC|UUGA GUAACGAAAA 2581 CAUUGG(UGA GAA-U)CCAA UG|CCCCGAA AACCUA-AGG GUUCCUC-CA CUAGG(UUCG 2641 U)CC|AUGGG GGGUUAGU|C AG|GACCUAA GGCUAGGCAA GU(ACAUA)A UUUGCGUCGU 2701 CG-AUGG-CA AACAGG(UUA AUAUU)CCUG U|AC|ua-a- -uuaaa-uua ---------- 2761 ---------- ---------- --------gg auc------- ugagggacga ag--gaggcu 2821 aagcugga|a -cu-gu-(-- --uuuuggau u--------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- --------)- g-cagu-|gg aa-------- ---------g 3061 cgu-uuagac ---------- ---------- ---------- ----guugag a-gau-cg(a 3121 a-caaa-aa) cg-|a--ucu uga------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ------gug- 3301 gagacgua-a ucc|-cua|- ---------- ---------- ---------- --------cu 3361 uauugg(--u uc-g--)cca aaaag----- ---------- ---------- -------uag 3421 -cuagu--ga uguc-aua-| cuuccaagaa aagcuca--u acaucuuu-- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- aua-auuu-a auua|c|CUG UACCUGAAA- CC(GACACA) 3601 GG|---UAG- GU-UG-GUA- (-GAGAA)-U ACCAA-GG-G GC||GCGAGA GAACUCUCUC 3661 UAAGGAA-CU CGGCAAACUG GCCCCGUAAC (UUCG)GAAG AAGGGGC|GC CCAGga---- 3721 ---------- (-uuuac)-- ---------- --uucUUGGG U|C(GC-A)G UGACCAGGCU 3781 CAGG|CGACU GU(UUACCAA AA)ACACAGG UCUCCG|CAA AGUC(GUAA) GACAAUAUAU 3841 GGGGGCUGAC GCC-UGCCCA GU|GCCGGAA GGUUAAGGAA GUUGGUUAcc --------(G 3901 UUGA)----- ---------- ---------- ---------- ---------g gGA-AGCUGA 3961 CGACCGAAGC C|CCGGUGAA C|GGC|GGUC GU(AACUAUA )ACGAUC|C( UAA)GGUAGC 4021 GAAAUUCAUU |GUCGAG(UA AGU)UUCGAC |CUGCACGAA AGGCGUAACG A-UCUGAGCG 4081 CUGUCUCAGA GAGAGGCUCG |GUGAAAUA| GACUUGUCCC G(UG-AAGAU G)CGGACUAC 4141 CUACACCUGG ACAG-AAAGA CCCUAUGA|A GCUUGACUGU |AUCUUGGAA UU|GGGU-UC 4201 GGGCUUUUCU UGCGCAG-CC UAGGUGGGAG GCGUU-GAAG AUUACCU(UC CG)GGGUAGU 4261 UGGAGCCAUC -AGUGAGAGA -CCACU|CU- GGAAGAGCU- AGAAUCCUAA -UGG-GG--A 4321 UCCU(----- --UGA-AUC) -AGGACCCUU GACAGUUUCA GGUGGGCAGU UUAUUUG(GG 4381 G)CGAAU|AC C-UCC(UAAA AGGUAAC)GG AGGU|G|U|G CAAAGGUUCC C|UCAGUCUG 4441 G--(ACGGAA A--)--UCAG ACAUU---GA |GU(G|UAAA G)GC-AAAA- --GGGAG--C 4501 UUGACUGCAA GAC(CUACAA )GUCGAGCAG GGGC(GAAA) GCCGGC|CUU AGUGAUCCGA 4561 CGGUG-CCG( AGUGGA)AGG |GCCGUCGCU CAAC|GGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUGA UCUUCCCCAA GA(GUUCACA )UCGACGGGA AGGUUUGGCA CCUCGAUGUC 4681 |GGCU|C|AU CAC|AUCC|U CGGUCU(GUA GUA)GGUC-C G-AAGGGU|U GGGC(UGUUC 4741 )GCCCAUU-A AAGUGGUACG UGAGCUGGGU UCAAAAC|GU C(GUGA)GAC AGUUUGGUCC 4801 AUAUCC|GGU GUAGG|CGUU AGAGCAUU|G A|GAGUA-GC CUUUCA(UAG UAC(GAGA)G 4861 GA-CC)UGAA AGG|-ACAUG CCAAUUGUGU ACCAGU|UCU CAU(UC-CA) AUGGGAAACG 4921 CUGGGUAGCU ACGCAUGGA- U-AG-AUAAC UGCU(GAAAG CAUCUA)AGU AGGAAGCUAA 4981 ACUC|AAGAU GAGUGCUCU| C-|------( ------)--- ----UA-A-G G|CC|GCGGC 5041 (UAGACAA)G CCGU-UA--- ---------- ---------- -----UAUAG |GUAUC|AGG 5101 UGUACAGUCA (GCAA)UGGC U|UUAGCCG| A|GAUAUACU AA-AGGCCGU --UUG|AUUU 5161 UGAC-----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS chl.C.komm 5239 bp RNA RNA 11-JAN-191 DEFINITION Chlamydomonas komma. ACCESSION No information KEYWORDS No information. SOURCE Chlamydomonas komma. ORGANISM Chlamydomonas komma. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: Z17237 :X68927-X68929 BASE COUNT 835 a 589 c 835 g 640 t 2340 others ORIGIN 1 |--------- ---------- -----UGAAA UGAA---CUA AGGCGUACGG UGGAGA|CCU 61 -AGG|CACUC AG|AG|ACGA AGAAG-GG|C GCA(GAUA-- ----CC-)G| GCG-AUACGC 121 UUCGGG|GAG CU(------- -----G-GC- AACA------ -----)AGCU UUG-AUCCGA 181 AGAUU|CCCA AA-UAGG(GC AA)CCU|--- ----(----- --ca-uagg) --------AC 241 UACCUAUA(U A-AUUCA--U A)GUU-AGG- ---UAA-Gag g-caAC|CCA GUGAACU|GA 301 (AACA)UCUA AGU-AGCUGG AGGAAAAGAA AGC(AAAC-- )GCG-AU|UC CCGUAGUAGU 361 -(GGCGA)GC GA-ACUGGGA -ACAGCCUAA Acuuguccaa ---------- (gcaa---)- 421 ---------u uggauagggg ucgu-gggag gacaaucuaa aaaauauaau uuuu------ 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------/--- ---------- 781 ---------- -A-AUACGAA GCAG-C(U-- GAAU)C-CUG -CAC|C(AUA )GAUGG(-UG 841 AAAGU)-CCA GUAGUAaa-- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 --------aa uaaaaauaua auuuu-uugu cuaauccc-- -GAGUAGCAU GGGG(CACGU 1141 GAAA)UCCCG UGUGAAUCAG CGAG(GACCA C)CUCGUAAG GCUAA-AUAC UCCUGAGUGA 1201 CCGAUAGCGA AAUAGUACC( ACGA)GGGAA AGGUGAAAA- GAACCCC(UG -UU-)GGGGA 1261 GUGAAAUAGA ACAUGAAACC GU---AUGCU GACAAGCAGU GGGAGCCU-U u--------- 1321 -----a(--- uau---)u-- ---------- ---gAGG--G -UGACCGCGU GCCU(GUUGA 1381 AG|A)AUGA| GCCGGCGACU UAUAGGAAGU GGCU------ -AGGGUU-AA GGa-(----g 1441 uaaaa)-uCC -GGAGCCCAA -GC(-GAAA) GCA----AGU CU(GAA-UA) GGGCG----- 1501 ---------- ---------- ---------- -u-a-uuGUC ACUUCUUAUG GACCCGAACC 1561 CGGGUGAUCU AUUCAUGGC| CAGGAUGAAG CUUGGG(UAA C)ACCAAGUG GAGGUCCGAA 1621 CCGACCGAU( GUUGAAAA)A UCGG|CGGAU GAGCUGUGAA UAG-GGGA(G AAAU)UCCAA 1681 UCGA-ACUCG GAGCUAGCUG GAUCUCCCCG -AAAUGCGU- (UGAG)-GCG CAGC|G-GUA 1741 ACAau----- ---------- ---------g |-ggc-|uAU -CUUG|GGGU AA|-AGCGAC 1801 UGU-UUCGAU GC-GG|GCUG C(GAGA-)GU GGUACCA-AG UCGUG-GCAA ACUCAGAAUA 1861 |CAAGA-U-- ---------- ---------- au-GCUU--- uc|-UGUAAA C-CAGUGAGA 1921 CGGUGGGG(G AUAAG)CUUC AU--CGUCAA GAGGG(AAAC AG)CCCAGAU CACCAGCUAA 1981 GGC|CCCU-A AAUG-GUCA- CUAAGUG--G UAAAGGAUGU -GAGAAUGCU GA---AACAA 2041 CCAGGAAGUU CGC(UUAGAA GCA)GCUAC- CUU|--U(CA A)A|GAGUGC (GUAAUA)GC 2101 |UCACUGGU- AAAGCGUUCU UGC|GCCGAU AAUG-GCCGG GACU-----A AGUGA-CC|U 2161 |GCCGAAGCU |GUGA|UAUC C-------(u u/-----u(a ua)aaa---- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 -----/)--- -----GGGUA GGUAGGGGAG |CGUU-CCGC UCUCGGG-U- GAAGUUUUC- 2521 AC(GUAA)GU G-GGGAUGG| ACGAAGCGGA AGUGAGAAUG UCGGC|UUGA GUAACGAAAA 2581 CAUUGG(UGA GAA-U)CCAA UG|CCCCGAA AACCUA-AGG GUUCCUC-CA CUAGG(UUCG 2641 U)CC|AUGGG GGGUUAGU|C AG|GACCUAA GACUAGGCC- --(-GAAU)- --GGCGUCGU 2701 CG-AUGG-CA AACAGG(UUA AUAUU)CCUG U|AC|ua-a- -uuaaa-uua ---------- 2761 ---------- ---------- --------gg auc------- ugagggacga ag--gaggcu 2821 aagcuaga|a -cu-gu-(-- --uuuuggau u--------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- --------)- g-cagu-|gg aa-------- ---------g 3061 cgu-uuagac ---------- ---------- ---------- ----guugag a-gac-ag(a 3121 a-caaa-aa) cu-|g--ucu uga------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ------gug- 3301 gagacgug-a ucc|-cua|- ---------- ---------- ---------- --------uu 3361 uggugc(--- gu-a--)gca ucgag----- ---------- ---------- -------uag 3421 -cuagu--ga uguc-aua-| cuuccaagaa aagcuca--u acaucuuu-- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- aua-auuu-a auua|c|CUG UACCUGAAA- CC(GACACA) 3601 GG|---UAG- GU-UG-GUA- (-GAGAA)-U ACCAA-GG-G GC||GCGAGA GAACUCUCUC 3661 UAAGGAA-CU CGGCAAACUG GCCCCGUAAC (UUCG)GAAG AAGGGGC|GC CCAGga---- 3721 ---------- (-uuaau)-- ---------- --uucUUGGG U|C(GC-A)G UGACCCGGCC 3781 CAGG|AGACU GU(UUACCAA AA)ACACAGG UCUCCG|CAA AGUC(GUAA) GACAAUAUAU 3841 GGGGGCUGAC GCC-UGCCCA GU|GCCGGAA GGUUAAGGAA GUUGGUUAcu ac------(U 3901 -UU-)---gu ---------- ---------- ---------- ---------a gGA-AGCUGA 3961 CGACCGAAGC C|CCGGUGAA C|GGC|GGUC GU(AACUAUA )ACGAUC|C( UAA)GGUAGC 4021 GAAAUUCAUU |GUCGAG(UA AGU)UUCGAC |CUGCACGAA AGGCGUAACG A-UCUGGGCG 4081 CUGUCUCGGA GAGAGACUCG |GUGAAAUA| GACUUGUCCC G(UG-AAGAU G)CGGACUAC 4141 CUACACCUGG ACAG-AAAGA CCCUAUGA|A GCUUGACUGU |AUCUUGGAA UU|GGGU-UC 4201 GGGCUUUUCU UGCGCAG-CC UAGGUGGGAG GCGAU-GAAG AUUACCU(UC CG)GGGUAAU 4261 UAGAGCCAUC -AGUGAGAGA -CCACU|CU- GGAAGAGCU- AGAAUCCUAA -UGG-GG--A 4321 UCCU(----- --UGA-AUC) -AGGACCCUU GAGAGUUUCA GGUGGGCAGU UUGUUUG(GG 4381 G)CGAAC|G- C-UCA(UAAA AGGUAAC)UG AGGU|G|U|G CAAAGGUUCC C|UCAGUCUG 4441 G--(ACGGAA A--)--UCAG ACAUU---GA |GU(G|UAAA G)GC-AAAA- --GGGAG--C 4501 UUGACUGCAA GAC(CUACAA )GUCGAGCAG GGGC(GAAA) GCCGGC|CUU AGUGAUCCGA 4561 CGGUG-CCG( UGUGGA)AGG |GCCGUCGCU CAAC|GGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUGA UCUUCCCCAA GA(GUUCACA )UCGACGGGA AGGUUUGGCA CCUCGAUGUC 4681 |GGCU|C|AU CAC|AUCC|U CGGUCU(GUA GUA)GGUCCC G-AAGGGU|U GGGC(UGUUC 4741 )GCCCAUU-A AAGUGGUACG UGAGCUGGGU UCAAAAC|GU C(GUGA)GAC AGUUUGGUCC 4801 AUAUCC|GGU GUAGG|CGCU AGAGCAUU|G A|GAGUA-GC CUUUCA(UAG UAC(GAGA)G 4861 GA-CC)UGAA AGG|-ACAUG CCAAUUGUGU ACCAGU|UCU CGU(UC-CA) ACGGGAAACG 4921 CUGGGUAGCU ACGCAUGGA- U-AG-AUAAC UGCU(GAAAG CAUCUA)AGU AGGAAGCUAA 4981 ACUC|AAGAU GAGUGCUCU| C-|------( ------)--- ----AU-AAG G|CC|GCGGC 5041 (UAGACAA)G CCGU-UA--- ---------- ---------- -----UAUAG |GUAUC|AGG 5101 UGUACAGUCA (GCAA)UGGC U|UCAGCCG| A|GAUAUACU AA-AGGCCGU --UUG|AUUU 5161 UGAC-----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS chl.C.mexi 5239 bp RNA RNA 11-JAN-191 DEFINITION Chlamydomonas mexicana. ACCESSION No information KEYWORDS No information. SOURCE Chlamydomonas mexicana. ORGANISM Chlamydomonas mexicana. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: Z17231 :X68910-X68912 BASE COUNT 856 a 596 c 825 g 642 t 2320 others ORIGIN 1 |--------- ---------- -----UCAAA UGAA---CCA AGGCAUAUGG UGGAGA|CCU 61 -AGG|CACUC AG|AG|ACGA UGAAG-GG|C GCA(GAUA-- ----CC-)G| GCG-AUACGC 121 UUCGGG|GAG CU(------- -----G-GC- AACA------ -----)AGCU UUG-AUCCGG 181 AGAUU|CCCG AA-UAGG(GC AA)CCU|--- ----(----- --au--aaa) --------AC 241 UACCUAUA(U A-AUUCA--U A)GUU-AGG- ---AAA-Gag g-caAC|CCA GUGAACU|GA 301 (AACA)UCUA AGU-AGCUGG AGGAAAAGAA AGC(AAAC-- )GCG-AU|UC CCGUAGUAGU 361 -(GGCGA)AC GA-ACCGGGA -UUAGCCUAA Acccauau-- ---------- (-uau---)- 421 ---------- -auauggggg uagu-gggag gacuaaaaaa aacuaagcgc uccgcgaaua 481 acuuuu---- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------/--- ---------- 781 ---------- -U-AUACGAA GCAG-C(U-- GAAU)C-CUG -CAC|C(AUA )GAUGG(-UG 841 AAAGU)-CCA GUAGUAaa-- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- -aagaaagua aaaaaaaguc uaauuccc-- -GAGUAGUAU GGGG(CACGU 1141 GAAA)UCCCG UAUGAAUCUG CGAG(GACCA C)CUCGUAAG GCUAA-AUAC UCCUGAGUGA 1201 CCGAUAGCGA AAUAGUACC( GCGA)GGGAA AGGUGAAAA- GAACCCC(UG -UU-)GGGGA 1261 GUGAAAUAGA ACAUGAAACC AU---GUGCU CUCAAGCAGU GGAAGGGC-U ---------- 1321 ------(--- guugu-)--- ---------- ----AGC--C -UGACCGCGU GCCU(GUUGA 1381 AG|A)AUGA| GCCGGCGACU UAUAGGAAGU GGC------- -UGGGUU-AA GGa-(----g 1441 uuaaa)-uCC -GUAGCCCAA -GC(-GAAA) GCG----AGU CU(UAA-UA) GGGCGua--- 1501 ---------- ---------- ---------- -a-a-ugGUC ACUUCUUAUG GACCCGAACC 1561 CGGGUGAUCU AUUCAUGAC| CAGGUUGAAG CUUUUG(UAA C)AAUAAGUG GAGGACCGAA 1621 CCGACCGAU( GUUGAAAA)A UCGG|CGGAU GAGUUGUGAA UAG-GGGA(G AAAU)UCCAA 1681 UCGA-ACUCG GAGCUAGCUG GAUCUCCCCG -AAAUGCGU- (UGAG)-GCG CAGC|G-GUA 1741 ACGau----- ---------- ---------g |-uac-|aAU -CUUG|GGGU AA|-AGCUAC 1801 UGU-UUCGAU GC-GG|GCUG C(GAAA-)GC GGUACCA-AG UCGUG-GCAA ACUCAGAAUA 1861 |CAAGA-U-- ---------- ---------- -uuGUUu--- uc|-CGUAAA C-CAGUGAGA 1921 CUGUGGGG(G AUAAG)CUUC AU--UGUCAA GAGGG(AAAC AG)CCCAGAU CACCAGCUAA 1981 GGC|CCCU-A AAUG-GUUG- CUAAGUG--G AAAAGGAUGU -GAGAAUGCU GA---AACAA 2041 CCAGGAGGUU UGC(CUAGAA GCA)GCCAC- CCU|--U(GA A)A|GAGUGC (GUAAUA)GC 2101 |UCACUGGU- AAAGCGUUCU UGC|GCCGAC AAUG-GCCGG GACU-----A AGUGA-CC|U 2161 |GCCGAAGCU |GUGA|UAUA G-------(u u/---uauac uauuaaaaau uaauacuacu 2221 uauaaa---- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 -----/)--- -----UUAUA GGUAGGGGAG |CGUU-CCGC CAUCGGG-U- GAAGUUUUC- 2521 AC(GUAA)GU G-GGGAUGG| ACGAGGCGGA AGUGAGAAUG UCGGC|UUGA GUAACGAAAA 2581 CAUCGG(UGA GAA-U)CCGA UG|CCCCGAA AACCUA-AGG GUUCCUC-CA CUAGG(CUCG 2641 U)CC|AUGGG GGGUUAGU|C AG|GACCUAA GACCAGGCC- --(-AAAC)- --GGCGUCGU 2701 CG-AUGG-AA AACAGG(UUA AUAUU)CCUG U|AC|gg-a- -uuuua-uua ---------- 2761 ---------- ---------- --------gg auc------- ugagggacga gg--gaggcu 2821 aaacuaaa|a -cu-gu-(-- --uuuuggau u--------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- --------)- g-cagu-|gg aa-------- ---------g 3061 cgu-uaaggu ---------- ---------- ---------- ----uuugag a-gau-ag(a 3121 a-gaaa-aa) cu-|a--ucu uga------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ------gcu- 3301 gaggcgug-a ucc|-cua|- ---------- ---------- ---------- --------uu 3361 uuaugg(--u uc-g--)cca uaaga----- ---------- ---------- -------ugg 3421 -uuagu--ga uguc-aaa-| cuuccaagaa aaucuca--u acaucuau-- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- aua-auaa-a auuc|c|CUG UACCUGAAA- CC(GACACA) 3601 GG|---UAG- GU-UG-GUA- (-GAGAA)-U ACCAA-GG-G GC||GCGAGA GAACUCUCUC 3661 UAAGGAA-CU CGGCAAACUG GCCCCGUAAC (UUCG)GAAG AAGGGGC|GC CCU------- 3721 ---------- (-cuaaa)-- ---------- -----aAGGG U|C(GC-A)G UGACCAGGCC 3781 CAGG|CGACU GU(UUACCAA AA)ACACAGG UCUCCG|CAA AGUC(GCAA) GACAAUAUAU 3841 GGGGGCUGAC GCC-UGCCCA GU|GCCGGAA GGUUAAGGAA GUUGGUUAuu c-------(G 3901 -CGA)----g ---------- ---------- ---------- ---------a aGA-AGCUGA 3961 CGACCGAAGC C|CCGGUGAA C|GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC 4021 GAAAUUCAUU |GUCGAG(UA AGU)UUCGAC |CUGCACGAA AGGCGUAACG A-UCUGGGCG 4081 CUGUCUCGGA GAGAGGCUCG |GUGAAAUA| GACUUGUCCC G(UG-AAGAU G)CGGACUAC 4141 UUGCACCUGG ACAG-AAAGA CCCUAUGA|A GCUUGACUGU |AUCUUGGAA UU|GGGU-UC 4201 GGGCUUUUCU UGCGCAG-CC UAGGUGGGAG GCUAU-GAUG AUUUCCU(UC CG)GGGAAGU 4261 UGGAGCCGUC -AUUGAGAGA -CCACU|CU- GGAAGAGCU- AGAAUCCUAA -UGG-GG--A 4321 UCCU(----- --UGA-AUC) -AGGACCCUU GAAAGUUUCA GGUGGGCAGU UUAUUUG(GG 4381 G)CGAAU|GC C-UCC(UAAA AGGUAAC)GG AGGC|G|U|G CAAAGGUUCC C|UCAGUCUG 4441 G--(ACGGAA A--)--UCAG ACAUU---GA |GU(G|CAAA G)GC-AAAA- --GGGAG--C 4501 UUGACUGCAA GAC(CUACAA )GUCGAGCAG GGGC(GAAA) GCCGGC|CUU AGUGAUCCGA 4561 CGGUG-CCG( CGUGGA)AGG |GCCGUCGCU CAAC|GGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUGA UCUUCCCCAA GA(GUUCACA )UCGACGGGA AGGUUUGGCA CCUCGAUGUC 4681 |GGCU|C|AU CAC|AUCC|U CGAUCU(GUA GUA)GGUU-C G-AAGGGU|U GGGC(UGUUC 4741 )GCCCAUU-A AAGUGGUACG UGAGCUGGGU UCAGAAC|GU C(GUGA)GAC AGUUCGGUCC 4801 AUAUCC|GGU GUAAG|CGUU AGAGUAUU|G A|GAGGA-GC CUUCCA(UAG UAC(GAGA)G 4861 GA-CC)UGGA AGG|-ACAUG CCAAUGGUGU ACCAGU|UCU CAU(UC-CA) AUGGGAAACG 4921 CUGGGUAGCU AUGCAUGGA- U-AG-AUAAC UGCU(GAAAG CAUCUA)AGU AGGAAGCUAA 4981 CCUC|AAGAU GAGUACUCU| C-|------( ------)--- -----U-AAG G|UC|GCGGC 5041 (CAGACCA)G CCGU-UU--- ---------- ---------- -----AAUAG |GCAUC|AGG 5101 UAUACAAUCA (GCAA)UGAU U|UUAGCCG| A|GAUGUACU AA-AGACCAA --UAG|AUUU 5161 UGAC-----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS chl.C.pall 5239 bp RNA RNA 11-JAN-191 DEFINITION Chlamy. pallidostigmatica. ACCESSION No information KEYWORDS No information. SOURCE Chlamy. pallidostigmatica. ORGANISM Chlamy. pallidostigmatica. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: Z17229 :X68899-X68904 BASE COUNT 928 a 633 c 884 g 737 t 2057 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~UCAAA UGAA---UUA AGGCGUAUGG CGGAGA|CCU 61 -AGG|CACUC AG|AG|ACGA UGAAG-GG|C GCA(GAUA-- ----CC-)G| GCG-AAACGC 121 UUCGGG|GAG CU(------- -----G-GC- AACA------ -----)AGCU UUG~AUCCGA 181 AGAUU|CCCG AA-UAGG(GC AA)CCU|--- ----(----- --au--uaa) --------AC 241 UUCCUAUA(C A-AUUCA--U A)UUU-AGG- ---AAA-Gag a-gaAC|CCA GUGAACU|GA 301 (AACA)UCUA AGU-AGCUGG AGGAAAAGAA AGC(AAAA-- )GCG-AU|UC CCGUAGUAGC 361 -(GGCGA)GC GA-ACUGGGA -UCAGCCUAA Accugggua- ---------- (gaaa---)- 421 ---------- uacuccggug uagu-gggaa gacgcagcuu uaucuugcca ucgccagcgu 481 u------agc a--ggcuucu caccguaaag gugagaaggg cugcuuugcc gaccg----- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- --uaaaagug aggcaagaua 721 aagcaaaaua aagaaaaaac uaucuuuuuu uuuucauaua aaaaaagaaa acugaau-/- 781 ---------- -C-AGGCGAA GCAG-C(U-- GAAU)C-CUG -UAC|C(AUA )GACGG(-UG 841 AAAGU)-CCG GUAGCUca-- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- -uauuagagu uuuuucuugu caaauccc-- -GAGUAGCAU GGGA(CACGU 1141 GAAA)UCCCG UGUGAAUCUG CGAG(GACCA C)CUCGUAAG GCUAA-AUAC UCCUGAGUGA 1201 CCGAUAGCGA AAUAGUACC( GCGA)GGGAA UGGUGAAAA- GAACCCC(UG -UG-)GGGGA 1261 GUGAAAUAGA ACAUGAAACC GU---ACGCU GACAAGCAGU GGGAGGUC-C ---------- 1321 ------(--- guaa--)--- ---------- ----GGG--C -UGACCGCGU GCCU(AUUGA 1381 AG|A)AUGA| GCCGGCGACU UAUAGGGAGU GGC------- -UUGGUU-AA GGa-(----g 1441 uuuaa)-uCC -GGAGCCGAA -GC(-GAAA) GCA----AGU CU(GAA-UA) GGGCAaa--- 1501 ---------- ---------- ---------- -U-A-UAGUC ACUUCUUAUG GACCCGAACC 1561 CGGGUGAUCU AAUCAUGAC| CAGAUUGAAG CAUGGG(UCA C)ACCUUGUG GAGGAUCGAA 1621 CACACCAAU( GUUGAAAA)A UUGG|GUGAU GAGUUGUGAU UAG-GGGA(G AAAU)UCCAA 1681 UCGA-ACUCG GAGCUAGCUG GAUCUCCCCG -AAAUGCGU- (UGAG)-GCG CAGC|G-GUA 1741 ACgau----- ---------- ---------g |-aGC-|UGU -CUAG|GGGU AA|-AGCGAC 1801 UGU-UUCGAU GC-GG|GCUG C(GAAA-)GC GGUACCA-AG UCGUG-GCAA ACUCAGAAUA 1861 |CUAGC-A-- ---------- ---------- aa-GCCu--- uc|-CGUGAA C-CAGUGAGU 1921 GAUGGGGC(G AUAAG)GUUC UG--UCACAA AAGGG(AAAC AG)CCCAGAU CACCAGCUAA 1981 GGC|CCCA-A AAUG-GUCA- CUAAGUG--G AAAAGGAUGU -GAGAAUGCU AA---AACAA 2041 CUAGAAAGUU CGC(UUAGAA GCA)GCUAC- CCU|--U(UA A)A|GAGUGC (GUAAUA)GC 2101 |UCACUAGU- AAAGCGUUCU UGC|GCCGAC AAUG-GCCGG GACU-----A AGUGA-CC|U 2161 |GCCGAAGCU |GUGG|UAUA --------(u u----uaauu uuuagacuua ccuuugcuuc 2221 auaaagucgc aucugcgacu cuugcuuuug cucuuguccu caccc(uaaa )ggguuaggg 2281 cauagaccau gggacucuug uccuaauuau gugcuucgca cauaauggga ugaaguauaa 2341 gucaaauuuu aaaa------ ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ------)--- -------AUA GGUAGGGGAG |CGUU-CUAC U-UUGGG-U- GAAGUCUUU- 2521 AU(GGAA)AU G-AGGAUGG| ACAGAGUAGA AGUGAGAAUG UUGGC|UUGA GUAACGAAAA 2581 CAUUGG(UGA GAA-U)CCAA UG|CCCCGAA AACCUA-AGG GUUCCUC-CA CUAGG(UUCG 2641 U)CC|GUGGG GGGUGAGU|C AG|GACCUAA GGCGAGGCC- --(-GAAA)- --GGCGUAGU 2701 CG-AUGG-CA AACAGG(UUA AUAUU)CCUG U|AC|uu-a- -uucua-uua u--------- 2761 ---------- ---------- --------ug aac------- agggggacga ag--gaggcu 2821 aagcuagg|u -cu-gu-(-- --uucuggau u--------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- --------)- g-cagu-|gg aa-------- ---------g 3061 cgu-uuaggu ---------- ---------- ---------- ----guugau a-ggu-ag(a 3121 a-aaaa-ag) cu-|a-uccu uga------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ------gcu- 3301 aagacgug-a ucc|-cua|- ---------- ---------- ---------- --------aa 3361 aauggc(--u uc-g--)guu guuuu----- ---------- ---------- -------uag 3421 -cuagu--ga ugcc-aaa-| cuuccaagaa aagcucu--u acgauuua-- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- --g-guag-a auga|c|CUG UACCUGAAA- CC(GACACA) 3601 GG|---UAG- GU-UA-GUA- (-GAGAA)-U ACUAA-GG-G GC||GCGAGA GAACUCUCUC 3661 UAAGGAA-CU CGGCAAAUUG GCCCCGUAAC (UUCG)GAAG AAGGGGC|GC CUUcguuugu 3721 ------cagc (-aaca-)gc ug-------g cgaaaAAAGG U|C(GC-A)G UGACCAGGCC 3781 CAAG|CAACU GU(UUAUCAA AA)ACACAGG UCUCCG|CAA AGUC(GUAA) GACAAUAUAU 3841 GGGGGCUGAC GCC-UGCCCA GU|GCUGGAA GGUUAAGGAA GUUGGUUAgg gu------(G 3901 -UAA)---ac ---------- ---------- ---------- ---------u uGA-AGCUGA 3961 CAACCGAAGC C|CCAGUGAA C|GGC|GGUC GU(AACUAUA )ACGAUC|C( UAA)GGUAGC 4021 GAAAUUCAUU |GUCAAG(UA AGU)UUUGAC |CCGCACGAA AGGCGUAAUG A-UUUGGGCA 4081 CUGUCUCGGA GAGAGGCUCG |GUGAAAUA| GACUUGU-UC G(UG-AAGAU G)CGGACUAC 4141 CUACACCUGG ACAG-AAAGA CCCUAUGA|A GCUUGACUGU |AUCCUGGAA UU|GGGU-UC 4201 GGGCUUUUCU UGCGCAG-CC UAGGUGGGAG GCUAU-GAAG AAUUCCU(UC UG)GGGAAUU 4261 UGGAGCCAUC -AUUGAGAGA -CCACU|CU- AGAAGAGCU- AGAAUCCUAA -UGG-CG--A 4321 UCCU(----- --UGA-AUC) -AGGACGCUU GACAAUUUCA GGUGGGCAGU UUUUUUG(GG 4381 G)CGAAA|AC C-UCC(UAAA AGGUAAC)GG AGGU|G|U|G CAAAGGUUCC C|UCAGCCUG 4441 G--(ACGGAA A--)--UCAG GCAUU---GA |GU(G|UAAA A)GC-AAAA- --GGGAG--C 4501 UUGACUGCAA GAC(CUACAA )GUCGAGCAG GGGC(GAAA) GCCGGC|UUU AGUGAUCCGA 4561 CGGUA-CCG( UGUGGA)AGG |GCCGUCGCU CAAC|GGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUGA UCUUCCCCAA GA(GUCCACA )UCGACGGGA AGGUUUGGCA CCUCGAUGUC 4681 |GGCU|C|AU CAC|AUCC|U CGGUCU(GCA GUA)GGUC-C G-AAGGGU|U GGGC(UGUUC 4741 )GCCCAUU-A AAGUGGUACG UGAGCUGGGU UCAAAAC|GU C(GUGA)GAC AGUUUGGUCC 4801 AUAUCC|GGU GUAAG|CGUU GGAACAUU|G A|GGAAA-GC UUUUCC(UAG UAC(GAGA)G 4861 GA-UU)GGAA AGG|-ACAUG CCUAUGGUGU ACCUGU|UAU CAC(UC-CA) GUGGUAAACG 4921 CAGGGUAGCU ACGCAUGGU- U-UG-AUUAG CGCU(GACAG CAUAUA)AGU GCGAAACAGA 4981 UUCC|AAGAU GAGUGUUCC| CC|------( ------)--- ----AU-UAA G|CC|GCGCG 5041 (UAGACAA)U GCGA-UU--- ---------- ---------- -----GAUAG |GUAUU|ACG 5101 UGUAAGAGCA (GCAA)UGCU U|UAAGCUG| A|GAUAUACU AA-AGGCUGA --UUG|AUUU 5161 UGAC-----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS chl.C.pete 5239 bp RNA RNA 11-JAN-191 DEFINITION Chlamydomonas peterfii. ACCESSION No information KEYWORDS No information. SOURCE Chlamydomonas peterfii. ORGANISM Chlamydomonas peterfii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: Z15149 :X68887,X68888 BASE COUNT 874 a 600 c 821 g 665 t 2279 others ORIGIN 1 |--------- ---------- -----UCAAA UGAA---CCA AGGCAUAUGG UGGAGA|CCU 61 -AGG|CACUC AG|AG|ACGA UGAAG-GG|C GCA(GAUA-- ----CC-)G| GCG-AUACGC 121 UUCGGG|GAG CU(------- -----G-GC- AACA------ -----)AGCU UUG-AUCCGG 181 AGAUU|CCCG AA-UAGG(GC AA)CCU|--- ----(----- --au--aaa) --------AC 241 UACCUAUA(U A-AUUCA--U A)GUU-AGG- ---UAA-Gag g-caAC|CCA GUGAACU|GA 301 (AACA)UCUA AGU-AGCUGG AGGAAAAGAA AGC(AAAC-- )GCG-AU|UC CCGUAGUAGU 361 -(GGCGA)AC GA-ACCGGGA -UUAGCCUAA Acccgua--- ---------- (gcaua--)- 421 ---------- --uauggggg uagu-gggag gacuauauuu guguuagcuu acuuuuuuau 481 aagcuaacac aaaucaaaaa aaucuauagc cuuuaaaagg ccuauuuu-- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------/--- ---------- 781 ---------- -U-AUACGAA GCAG-C(U-- GAAU)C-CUG -CAC|C(AUA )GAUGG(-UG 841 AAAGU)-CCA GUAGUAaa-- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- -aaaaaaaaa uaaaaaaguc uaauuccc-- -GAGUAGUAU GGGG(CACGU 1141 GAAA)UCCCG UAUGAAUCUG CGAG(GACCA C)CUCGUAAG GCUAA-AUAU UCCUGAGUGA 1201 CCGAUAGCGA AAUAGUACC( GCGA)GGGAA CGGUGAAAA- GAACCCC(UG -UU-)GGGGA 1261 GUGAAAUAGA ACAUGAAACC AU---GUGCU UGCAAGCAGU GGAAGGGU-U ---------- 1321 ------(--- aag---)--- ---------- ----AGC--C -UGACCGCGU GCCU(GUUGA 1381 AG|A)AUGA| GCCGGCGACU UAUAGGAAGU GGC------- -UGGGUU-AA GGa-(----a 1441 uucaa)-uCC -GUAGCCCAA -GC(-GAAA) GCG----AGU CU(GAA-UA) GGGCGua--- 1501 ---------- ---------- ---------- -a-a-ugGUC ACUUCUUAUG GACCCGAACC 1561 CGGGUGAUCU AUUCAUGAC| CAGGUUGAAG CUUUUG(UAA C)ACUAAGUG GAGGACCGAA 1621 CCGACCGAU( GUUGAAAA)A UCGG|CGGAU GAGUUGUGAA UAG-GGGA(G AAAU)UCCAA 1681 UCGA-ACUCG GAGCUAGCUG GAUCUCCCCG -AAAUGCGU- (UGAG)-GCG CAGC|G-GUA 1741 ACGau----- ---------- ---------g |-uac-|aGU -CUUG|GGGU AA|-AGCUAC 1801 UGU-UUCGAU GC-GG|GCUG C(GAGA-)GC GGUACCA-AG UCGUG-GCAA ACUCAGAAUA 1861 |CAAGA-U-- ---------- ---------- --uGUUu--- uc|-CGUAAA C-CAGUGAGA 1921 CAGUGGGG(G AUAAG)CUUC AU--UGUCAA GAGGG(AAAC AG)CCCAGAU CACCAGCUAA 1981 GGC|CCCU-A AAUG-GCUG- CUAAGUG--G AAAAGGAUGU -GAGAAUGCU UA---AACAA 2041 CCAGGAAGUU CGC(UUAGAA GCA)GCUAC- CCU|--U(GA A)A|GAGUGC (GUAAUA)GC 2101 |UCACUGGU- AAAGCGUUCU UGC|GCCGAC AAUG-GCCGG GACU-----A AGUAG-CC|U 2161 |GCCGAAGCU |GUGA|UAUA G-------(u u/---ua(ac uua)uaaa-- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 -----/)--- -----UUAUA GGUAGGGGAG |CGUU-CUGG UCUCGGG-U- GAAGUUUAU- 2521 AC(GUAA)GU A-UGGAUGG| ACGAACCAGA AGUGAGAAUG UUGGC|UUGA GUAACGAAAA 2581 CAUCGG(UGA GAA-U)CCGA UG|CCCCGAA AACCUA-AGG GUUCCUC-CA CUAGG(CUCG 2641 U)CC|AUGGG GGGUUAGU|C AG|GACCUAA GACCAGGCC- --(-AAAU)- --GGCGUCGU 2701 CG-AUGG-AA AACAGG(UUA AUAUU)CCUG U|AC|ga-a- -uuuua-uua ---------- 2761 ---------- ---------- --------ag auc------- ugggggacga ag--gaggcu 2821 acucuaaa|a -cu-gu-(-- --uuuuggau u--------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- --------)- g-cagu-|gg aa-------- ---------g 3061 cgu-uuaggu ---------- ---------- ---------- ------ugag a-gau-ag(a 3121 a-uaaa-aa) cu-|a--ucu u--uuuggu- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---cucuggc caaaaaacu- 3301 gagacgug-a ucc|-cug|- ---------- ---------- ---------- --------uc 3361 uuaugg(--u uc-g--)cca uaaga----- ---------- ---------- -------uag 3421 -uuagaa-ua uguc-aaa-| cuuccaagaa aauccca--u acaucuau-- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- aua-auaa-a guuc|c|CUG UACCUGAAA- CC(GACACA) 3601 GG|---UAG- GU-UG-GUA- (-GAGAA)-U ACCAA-GG-G GC||GCGAGA GAACUCUCUC 3661 UAAGGAA-CU CGGCAAACUG GCCCCGUAAC (UUCG)GAAG AAGGGGC|GC CCU------- 3721 ---------- (-cuaaa)-- ---------- ----aaAGGG U|C(GC-A)G UGACCAGGCC 3781 CAGG|CGACU GU(UUACCAA AA)ACACAGG UCUCCG|CAA AGUC(GAAA) GACAAAAUAU 3841 GGGGGCUGAC GCC-UGCCCA GU|GCCGGAA GGUUAAGGAA GUUGGUUAuu uc------(G 3901 -CAA)---ga ---------- ---------- ---------- ---------a aAA-AGCUGA 3961 CGACCGAAGC C|CCGGUGAA C|GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC 4021 GAAAUUCAUU |GUCGAG(UA AGU)UUCGAC |CUGCACGAA AGGCGUAACG A-UCUGGGCG 4081 CUGUCUCGGA GAGAGGCUCG |GUGAAAUA| GACUUGUCCC G(UG-AAGAU G)CGGACUAC 4141 UUACACCUGG ACAG-AAAGA CCCUAUGA|A GCUUGACUGU |AUCUUGGAA UU|GGGU-UU 4201 GGGCUUUUCU UGCGCAG-CC UAGGUGGGAG GCUAU-GAUG AUUUCCU(UC CG)GGGAAGU 4261 UGGAGCCGUC -AUUGAGAGA -CCACU|CU- GGAAGAGCU- AGAAUCCUAA -UGG-GG--A 4321 UCCU(----- --UGA-AUC) -AGGACCCUU GAAAGUUUCA GGUGGGCAGU UUAUUUG(GG 4381 G)CGAAU|GC C-UCC(CAAA AGGUAAC)GG AGGC|G|U|G CAAAGGUUCC C|UCAGUCUG 4441 G--(ACGGAA A--)--UCAG ACAUU---GA |GU(G|CAAA G)GC-AAAA- --GGGAG--C 4501 UUGACUGCAA GAC(CUACAA )GUCGAGCAG GGGC(GAAA) GCCGGC|CUU AGUGAUCCGA 4561 CGGUG-CCG( UGUGGA)AGG |GCCGUCGCU CAAC|GGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUGA UCUUCCCCAA GA(GUUCACA )UCGACGGGA AGGUUUGGCA CCUCGAUGUC 4681 |GGCU|C|AU CAC|AUCC|U CGAUCU(GUA GUA)GGUUCC G-AAGGGU|U GGGC(UGUUC 4741 )GCCCAUU-A AAGUGGUACG UGAGCUGGGU UCAGAAC|GU C(GUGA)GAC AGUUCGGUCC 4801 AUAUCC|GGU GUAAG|CGUU AGAGUAUU|G A|GGGGA-GC CUUCUA(UAG UAC(GAGA)G 4861 GA-CC)UAGA AGG|-ACAUG CCAAUGGUGU ACCAGU|UCU CAU(UC-CA) AUGGGAAACG 4921 CUGGGUAGCU AUGCAUGGA- U-AG-AUAAC UGCU(GAAAG CAUCUA)AGU AGGAAGCUAA 4981 CCCC|AAGAU GAGUACUCU| CU|------( ------)--- ----UU-AAG G|UC|GCGGC 5041 (CAGAUAA)G CCGU-UU--- ---------- ---------- -----AAUAG |GCAUC|AGG 5101 UGUACAAUCA (GCAA)UGAC U|UUAGCCG| A|GAUGUACU AA-AGACCGA --UAG|AUUU 5161 UGAC-----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS chl.C.pits 5239 bp RNA RNA 11-JAN-191 DEFINITION Chlamydomonas pitschmanni. ACCESSION No information KEYWORDS No information. SOURCE Chlamydomonas pitschmanni. ORGANISM Chlamydomonas pitschmanni. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: Z15152 BASE COUNT 904 a 601 c 834 g 678 t 2222 others ORIGIN 1 |--------- ---------- -----UCAAA UGAA---CUA AGGCUUACGG CGGAGA|CCU 61 -AGG|CACCC AG|AG|ACGA UGAAG-GG|C GCA(GAUA-- ----CC-)G| GCG-AAACGC 121 UUCGGG|GAA CU(------- -----G-GC- AACA------ -----)AGUU UUG-AUCCGA 181 AGAUC|CCCG AA-UAGG(GC AA)CCU|--- ----(----- --cu--aga) --------AC 241 UACCUAU-(G A-AUUCA--U A)AGU-AGG- ---UGA-Gag a-caAC|CCA GUGAAUU|GA 301 (AACA)UCUU AGU-AACUGG CGGAAAAGAA AGC(AAAC-- )GCG-AU|UC CCGUAGUAGC 361 -(GGCGA)GC GA-ACCGGGA -ACAGCCUAA Accu------ ---------- (guaaaa-)- 421 ---------- -----agggg uagu-gggaa gacuauaguu uauauauaga c----cacgg 481 cgaacguuuu u-auuuuuua aaaagcauag ccgcgggcau auaaacagcc uaaaauggca 541 aaaguaagaa ucuguuuaac agaucucgua u--------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------/--- ---------- 781 ---------- -U-AAACGAA GCAG-C(U-- GAAU)C-CUG -CAC|C(AUA )GAUGG(-UG 841 AAAGU)-CCC GUAGUUga-- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ----aaacga uuuuuaaagu cuuauccc-- -GAGUAGCAU GGGA(CACGU 1141 GGAA)UCCCG UGUGAAUCAG CGAG(GACCA C)CUCGUAAG GCUAA-AUAC UCCUGGGUGA 1201 CCGAUAGUGC AA-AGUACC( GCGA)GGGAA UGGUAAAAA- GAACCCC(UG -UA-)GGGGA 1261 GUGAAAUAGA ACAUGAAACC GU---AAGCU GACAAGCAGU GGGAGGUU-U ---------- 1321 ------(--- uuua--)--- ---------- ----GGA--C -UGACCGCGU GCCU(GUUGA 1381 AG|A)AUGA| GCCUGCGACU UAUAGGGAGU GGC------- -AAGGUU-AA GGa-(----g 1441 uuaaa)-uCC -GGAGCCUUA -GC(-GAAA) GCA----AGU CU(UAA-UA) GGGCGa---- 1501 ---------- ---------- ---------- -u-a-aaGUC ACUUCUUAUG GACCCGAACC 1561 CGGGUGAUCU AUUCAUGGC| CAGGAUGAAG CUUGGG(UAA C)ACCUAGUG GAGGUCCGAA 1621 CCGACCGAU( GUUGAAAA)A UCGG|CGGAU GAGCUGUGAA UAG-GGGA(G AAAU)UCCAA 1681 UCGA-ACUCG GAGCUAGCUG GAUCUCCCCG -AAAUGCGU- (UGAG)-GCG CAGC|G-GUG 1741 GCUau----- ---------- ---------g |-agc-|uAU -CUAG|AGGU AA|-AGCGAC 1801 UGU-UUCGAU GC-GG|GCUG C(GAAA-)GC GGUACCA-AG UCGUG-GCAA ACUCAGAAUA 1861 |CUAGA-U-- ---------- ---------- aucGCCu--- uc|-AGUCAA C-CAGUGAAA 1921 CGUCCGGG(G AUAAG)CUCG GC--CGUUAA GAGGG(AAAC AG)CCCAGAU CACCAGCUAA 1981 GGC|CCCU-A AAUGAGUCA- CUAAGUG--G AGAAGGAUGU -GACGAUGCU AA---AACAA 2041 CCAGGAGGUU UGC(UUAGAA GCA)GCCAC- CCU|--U(GA A)A|GAGUGC (GUAAUA)GC 2101 |UCACUGGU- AAAGCGUUGU UGC|GCCGAA AAUG-GCCGG GACU-----A AGUGA-CC|U 2161 |GCCGAAGCU |GUGA|UAUU U-------(u u/---uau(a aaaa)auaaa g--------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 -----/)--- -----AAAUA GGUAGGGGAG |CGUU-CUCU UGUCGGG-U- GAAGUUUUC- 2521 AC(GGAA)GU G-AUGAUGG| ACGAAUGAGA AGCGAGAAUG UAGGU|UUGA GUAACGAAAA 2581 CAUUGG(UGA GAA-U)CCAA UG|CCCCGAA AACCUA-AGG GUUCCUC-CA CUAGG(UUCG 2641 U)CC|AUGGG GGGUGAGU|C AG|GACCUAA GGCAAGUUCG A-(-UAAU)- UCGAAGUAGU 2701 CG-AUGG-AA AACAGG(UUA AUAUU)CCUG U|AC|ua-a- -uuuua-uug ---------- 2761 ---------- ---------- ---------g gaac------ caagugacga ag--gagacu 2821 aaacagaa|a -cu-gc-(-- --uacuggau u--------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- --------)- u-cagu-|gg aa-------- ---------g 3061 cau-uuaggu ---------- ---------- ---------- ----guugag a-gcu-ag(a 3121 a-gaaa-aa) cu-|a-ugcu uga------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ------gcu- 3301 aaggugca-a ucc|-cuc|- ---------- ---------- ------uauu auagua-aug 3361 uguacu(--u uc-g--)agu auauuuccac uauagug--- ---------- -------gag 3421 -ucugu--ga uguc-aaa-| cuuccaagaa aagcuug--a acaccuua-- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- aca-auuu-a auua|c|CUG UACCUGAAA- CC(GACACA) 3601 GG|---UAG- GU-UG-GUA- (-GAGAA)-U ACCAA-GG-G GC||GCGAGA GAACUCUCUC 3661 UAAGGAA-CU CGGCAAACUG GCCCCGUAAC (UUCG)GAAG AAGGGGC|GC CCUUuuaa-- 3721 -------auu (-uaac-)ga u--------- -aaaaAAGGG U|C(GC-A)G UGACCAGGCU 3781 CAAG|CAACU GU(UUAUCAA AA)ACACAGG UCUCCG|CAA AGUC(GUAA) GACGAUAUAU 3841 GGGGGCUGAC ACC-UGCCCA GU|GCCGGAA GGUUAAGGAA GUUGGUUAuu aa------(G 3901 -UAA)---uu ---------- ---------- ---------- ---------a aGA-AGCUGA 3961 CGACCGAAGC C|CCGGUGAA C|GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC 4021 GAAAUUCAUU |GCCAAG(UA AGU)UUUGGC |CUGCACGAA AGGUGUAAUG A-UUUGAGCG 4081 CUGUCUCGGA GAGAGACUCG |GUGAAAUA| GACUUGUCCC G(UG-AAGAU G)CGGACUAC 4141 CUACACUUGG ACAG-AAAGA CCCUAUGA|A GCUUGACUGU |AUCUUGGAA UU|GGGU-UC 4201 GGGCUUUUCU UGCGCAG-CC UAGGUGGGAG GCUUU-GAGG GUUUCCU(UC CG)GGGAAAU 4261 CGGAGCCAUC -AGUGAGAGA -CCACU|CU- GGAAGAGCU- AGAAUCCUAA -UGG-UG--A 4321 UCUU(----- --UGA-AUC) -AAGACACUU GACAGUUUCA GGUGGGCAGU UUAUCUG(GG 4381 G)CGGAU|GC C-UCC(UAAA GCGUAAC)GG AGGC|G|U|G CAAAGGUUCU C|UCAGUCUG 4441 G--(ACGGAA A--)--UCAG ACAGC---GA |GU(G|UAAA G)GC-AAAA- --GAGAG--C 4501 UUGACUGUAA GAC(CAACAA )GUCGAGCAG GGGC(GAAA) GCCGGC|CUU AGUGAUCCGA 4561 CGGUG-CCG( UGUGGA)AGG |GCCGUCGCU CAAC|GGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUGA UCUUCCCCAA GA(GUCCAUA )UCGACGGGA AGGUUUGGCA CCUCGAUGUC 4681 |GGCU|U|GU CAC|AUCC|U GGAGCG(GCA GUA)CGUU-C C-AAGGGU|U GGGC(UGUUC 4741 )GCCCAUU-A AAGUGGUACA UGAGCUGGGU UCAAAAC|GU C(GUGA)GAC AGUUUGGUCC 4801 AUAUCC|GGU GUAGG|CGUU AGAGCAUU|G A|GAGGA-GC CUUCAG(UAG UAC(GAGA)G 4861 GA-UU)CUGA AAG|-GUAAG CCAAUAGUGU AUCGGU|UAU UUU(UC-CA) AAAGUAAACG 4921 CCGAGUAGCC ACGCUUAUA- G-GG-AUAAC UGCU(GAAAG CAUCUA)AGU AGGAAACCCA 4981 CCUC|AAGAU GAGUGCUCU| C-|------( ------)--- ----AU-CAG G|UC|GCGGC 5041 (AAGACAA)G CCGU-UA--- ---------- ---------- -----UAUAG |GCAUU|AGG 5101 UGUACAAUCA (GUAA)UGAU U|UUAGCCG| A|GAUGUACU AA-AGACCGA --UUG|AUUU 5161 UGAC-----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS chl.C.rein 5239 bp RNA RNA 11-JAN-191 DEFINITION Chlamydomonas reinhardtii. ACCESSION No information KEYWORDS No information. SOURCE Chlamydomonas reinhardtii. ORGANISM Chlamydomonas reinhardtii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: X16686 :X15727,X16687 BASE COUNT 841 a 594 c 832 g 632 t 2340 others ORIGIN 1 |--------- ---------- -----UCAAA UGAA---UUA AGGCGUACGG UGGAGA|CCU 61 -AGG|CACUC AG|AG|ACGA AGAAG-GG|C GCA(GAUA-- ----CC-)G| GCG-AUACGC 121 UUCGGG|GAG CU(------- -----G-GC- AACA------ -----)AGCU UUG-AUCCGA 181 AGAUU|CCCG AA-UAGG(GC AA)CCU|--- ----(----- --ca-uaga) --------AC 241 UACCUAUA(U A-AUUCA--U A)GUU-AGG- ---UAA-Gag g-caAC|CCA GUGAACU|GA 301 (AACA)UCUA AGU-AGCUGG AGGAAAAGAA AGC(AAAC-- )GCG-AU|UC CCGUAGUAGC 361 -(GGCGA)GC GA-ACCGGGA -ACAGCCUAA Accuauguc- ---------- (gcaa---)- 421 ---------- gauguagggg ucgu-gggag gacaacauaa aaaucgcuau uuuu------ 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------/--- ---------- 781 ---------- -A-AUACGAA GCAG-C(U-- GAAU)C-CUG -CAC|C(AUA )GAUGG(-UG 841 AAAGU)-CCA GUAGUAaa-- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- aagaaaauuu agauuuuugu cuaauccc-- -GAGUAGCAU GGGG(CACGU 1141 GAAA)UCCCG UGUGAAUCAG CGAG(GACCA C)CUCGUAAG GCUAA-AUAC UCCUGAGUGA 1201 CCGAUAGCGA AAUAGUACC( ACGA)GGGAA AGGUGAAAA- GAACCCC(UG -UU-)GGGGA 1261 GUGAAAUAGA ACAUGAAACC GU---AUGCU GACAAGCAGU GGGAGCAA-G ---------- 1321 ------(--- aaug--)--- ---------- ----CUU--G -UGACCGCGU GCCU(GUUGA 1381 AG|A)AUGA| GCCGGCGACU UAUAGGGAGU GGC------- -UGGGUU-AA GGa-(----g 1441 uaaaa)-uCC -GGAGCCCAA -GC(-GAAA) GCG----AGU CU(GAA-UA) GGGCGca--- 1501 ---------- ---------- ---------- -a-a-ugGUC ACUUCUUAUG GACCCGAACC 1561 CGGGUGAUCU AUUCAUGGC| CAGGAUGAAG CUUGGG(UAA C)ACCAAGUG GAGGUCCGAA 1621 CCGACCGAU( GUUGAAAA)A UCGG|CGGAU GAGCUGUGAA UAG-GGGA(G AAAU)UCCAA 1681 UCGA-ACUCG GAGCUAGCUG GAUCUCCCCG -AAAUGCGU- (UGAG)-GCG CAGC|G-GUA 1741 ACGau----- ---------- ---------g |-aac-|uGU -CUUG|GGGU AA|-AGCUAC 1801 UGU-UUCGAU GC-GG|GCUG C(GAAA-)GC GGUACCA-AG UCGUG-GCAA ACUCAGAAUA 1861 |CAAGA-C-- ---------- ---------- au-GUCu--- uc|-CGUAAA C-CAGUGAGA 1921 CAGUGGGG(G AUAAG)CUUC AU--UGUCAA GAGGG(AAAC AG)CCCAGAU CACCAGCUAA 1981 GGC|CCCU-A AAUG-GUCA- CUAAGUG--G AAAAGGAUGU -GAGAAUGCU GA---AACAA 2041 CCAGGAGGUU UGC(UUAGAA GCA)GCCAC- CCU|--U(CA A)A|GAGUGC (GUAAUA)GC 2101 |UCACUGGU- AAAGCGUUCU UGC|GCCGAU AAUG-GCCGG GACU-----A AGUGA-CC|U 2161 |GCCGAAGCU |GUGA|UAUA A-------(u u/---uau(u au)auaaa-- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 -----/)--- -----UUAUA GGUAGGGGAG |CGUU-CCGC UCUCGGG-U- GAAGUUUUC- 2521 AC(GUAA)GU G-GGGAUGG| ACGAAGCGGA AGUGAGAAUG UCGGC|UUGA GUAACGAAAA 2581 CAUUGG(UGA GAA-U)CCAA UG|CCCCGAA AACCUA-AGG GUUCCUC-CA CUAGG(UUCG 2641 U)CC|AUGGG GGGUUAGU|C AG|GACCUAA GACUAGGCC- --(-AAAC)- --GGCGUCGU 2701 CG-AUGG-AA AACAGG(UUA AUAUU)CCUG U|AC|ga-g- -uuaaa-uua ---------- 2761 ---------- ---------- --------ug auc------- ugagggacga ag--gaggcu 2821 aagcuaga|a -cu-gu-(-- --uuuuggau u--------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- --------)- g-cagu-|gg aa-------- ---------g 3061 cgu-uuagac ---------- ---------- ---------- ----guugag a-gau-ag(a 3121 a-aaaa-ag) cu-|a--ucu uga------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ------gug- 3301 gagacgug-a ucc|-cua|- ---------- ---------- ---------- --------uu 3361 ugaugg(--u uc-g--)ccg ucgag----- ---------- ---------- -------uag 3421 -cuagu--ga uguc-aua-| cuuccaagaa aagcuca--u acaucuuu-- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- aua-auuu-a auga|c|CUG UACCUGAAA- CC(GACACA) 3601 GG|---UAG- GU-UG-GUA- (-GAGAA)-U ACCAA-GG-G GC||GCGAGA GAACUCUCUC 3661 UAAGGAA-CU CGGCAAACUG GCCCCGUAAC (UUCG)GAAG AAGGGGC|AC CCAUc----- 3721 ---------- (-cguaa)-- ---------- -caagGUGGG U|C(GC-A)G UGACCAGGCC 3781 CAGG|CGACU GU(UUACCAA AA)ACACAGG UCUCCG|CAA AGUC(GUAA) GACAAUAUAU 3841 GGGGGCUGAC GCC-UGCCCA GU|GCCGGAA GGUUAAGGAA GUUGGUUAuu uc------(g 3901 -UAA)---ga ---------- ---------- ---------- ---------a aAA-AGCUGA 3961 CGACCGAAGC C|CCGGUGAA C|GGC|GGUC GU(AACUAUA )ACGAUC|C( UAA)GGUAGC 4021 GAAAUUCAUU |GUCGAG(UA AGU)UUCGAC |CUGCACGAA AGGCGUAACG A-UCUGGGCG 4081 CUGUCUCGGA GAGAGGCUCG |GUGAAAUA| GACUUGUCCC G(UG-AAGAU G)CGGACUAC 4141 CUACACCUGG ACAG-AAAGA CCCUAUGA|A GCUUGACUGU |AUCUUGGAA UU|GGGU-UU 4201 GGGCUUUUCU UGCGCAG-CC UAGGUGGGAG GCUAU-GAAG AUUACCU(UC CG)GGGUAAU 4261 UAGAGCCGUC -AUUGAGAGA -CCACU|CU- GGAAGAGCU- AGAAUCCUAA -UGG-GG--A 4321 UCCU(----- --UGA-AUC) -AGGACCCUU GACAGUUUCA GGUGGGCAGU UUAUUUG(GG 4381 G)CGAAU|GC C-UCC(UAAA AGGUAAC)GG AGGC|G|U|G CAAAGGUUCC C|UCAGUCUG 4441 G--(ACGGAA A--)--UCAG ACAUU---GA |GU(G|UAAA G)GC-AAAA- --GGGAG--C 4501 UUGACUGCAA GAC(CUACAA )GUCGAGCAG GGGC(GAAA) GCCGGC|CUU AGUGAUCCGA 4561 CGGUG-CCG( CGUGGA)AGG |GCCGUCGCU CAAC|GGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUGA UCUUCCCCAA GA(GUUCACA )UCGACGGGA AGGUUUGGCA CCUCGAUGUC 4681 |GGCU|C|AU CAC|AUCC|U CGGUCU(GUA GUA)GGUC-C G-AAGGGU|U GGGC(UGUUC 4741 )GCCCAUU-A AAGUGGUACG UGAGCUGGGU UCAAAAC|GU C(GUGA)GAC AGUUUGGUCC 4801 AUAUCC|GGU GUAGG|CGUU AGAGCAUU|G A|GAGUA-GC CUUUCA(UAG UAC(GAGA)G 4861 GA-CC)UGAA AGG|-ACAUG CCAAUUGUGU ACCAGU|UCU CAU(UC-CA) AUGGGAAACG 4921 CUGGGUAGCU ACGCAUGGA- U-AG-AUAAC UGCU(GAAAG CAUCUA)AGU AGGAAGCUAA 4981 ACUC|AAGAU GAGUGCUCU| C-|------( ------)--- ----UA-A-G G|CC|GCGGC 5041 (UAGACAA)G CCGU-UA--- ---------- ---------- -----UAUAG |GUAUC|AGG 5101 UGUACAGUCA (GCAA)UGGC U|UUAGCCG| A|GAUAUACU AA-AGGCCGU --UUG|AUUU 5161 UGAC-----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS chl.C.star 5239 bp RNA RNA 11-JAN-191 DEFINITION Chlamydomonas starrii. ACCESSION No information KEYWORDS No information. SOURCE Chlamydomonas starrii. ORGANISM Chlamydomonas starrii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: Z15150 :X68889,X68890 BASE COUNT 883 a 661 c 896 g 692 t 2107 others ORIGIN 1 |--------- ---------- -----UCAAA UGAA---UUA AGGCGUACGG UGGAGA|CCU 61 -AGG|CACUC AG|AG|ACGA AGAAG-GG|C GCA(GAUA-- ----CC-)G| GCG-AUACGC 121 UUCGGG|GAG CU(------- -----G-GC- AACA------ -----)AGCA UUG-AUCCGG 181 AGAUU|CCCG AA-UAGG(GC AA)CCU|--- ----(----- --ca-uaga) --------AC 241 UACCUAUA(U A-AUUCA--U A)GUU-AGG- ---UAA-Gag g-caAC|CCA GUGAACU|GA 301 (AACA)UCUA AGU-AGCUGG AGGAAUAGAA AGC(AAAC-- )GCG-AU|UC CCGUAGUAGC 361 -(GGCGA)GC GA-ACCGGGA -ACAGCCUAA Acccacccc- ---------- (auuu---)- 421 ---------- gggguggggg ucgu-gggag gacagaucau uuucauaaaa uuuua----- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------/--- ---------- 781 ---------- -A-AUACGAA GCAG-C(U-- GAAU)C-CUG -CAC|C(AUA )GAUGG(-UG 841 AAAGU)-CCC GUAGUAaaac aaaauuuauu uacaucugga auauaaaucg cuucgagugc 901 cgugccgcgc cgccguucgg cuacguaguu gcgaccgugc cgcgccuucu uguccgaagg 961 acgcgaaggc gucgcgcuug ccggcaagcg aaggcuacgu aguugcgacc gugccgcgcc 1021 uucuuguccg aaggacgcga aggcgucggc cguuccggca agcgaaggca aggcauaaaa 1081 cagaaccuau uuuuuuccag auaaaacagu cuaauccc-- -GAGUAGCAU GGGA(CACGU 1141 GAAA)UCCCG UGUGAAUCAG CGAG(GACCA C)CUCGUAAG GCUAA-AUAC UCCUGAGUGA 1201 CCGAUAGCGA AAUAGUACC( ACGA)GGGAA AGGUGAAAA- GAACCCU(UG -UU-)AGGGA 1261 GUGAAAUAGA ACAUGAAACC GU---AUGCU GACAAGCAGU GGGAGCAA-G ---------- 1321 ------(--- uaug--)--- ---------- ----CUU--G -UGACCGCGU GCCU(GUUGA 1381 AG|A)AUGA| GCCGGCGACU UAUAGGAAGU GGC------- --AGGUU-AA GGa-(----g 1441 uuaaa)-uCC -GGAGCCUAA -GC(-GAAA) GCA----AGU CU(GAA-UA) GGGC------ 1501 ---------- ---------- ---------- -u-c-aaGUC ACUUCUUAUG GACCCGAACC 1561 CGGGUGAUCU AACCGUGAC| CAGGAUGAAG CUUGGG(UAA C)ACCAAGUG GAGGUCCGAA 1621 CCGACCGAU( GUUGAAAA)A UCGG|CAGAU GAGUUGCGGU UAG-CGGA(G AAAU)UCCAA 1681 UCGA-ACUCG GAGCUAGCUG GAUCUCCCCG -AAAUGCGU- (UGAG)-GCG CAGC|G-GUA 1741 ACGau----- ---------- ---------g |-aac-|gAU -CUUG|GGGU AA|-AGCGAC 1801 UGU-UUCGAU GC-GG|GCUG C(GAGA-)GU GGUACCA-AG UCGUG-GCAA ACUCAGAAUA 1861 |CAAGA-U-- ---------- ---------- uu-GUUU--- uc|-CGUAAA C-CAGUGAGA 1921 CAGUGGGG(G AUAAG)CUUC AU-GUGUCAA GAGGG(AAAC AG)CCCAGAC CACCAGCUAA 1981 GGC|CCCU-A AAUG-GUCA- CUAAGUG--G AAAAGGAUGU -GAGAAUGCU GA---AACAA 2041 CCAGGAAGUU CGC(UUAGAA GCA)GCUAU- CCU|--U(AA A)A|GAGUGC (GUAAUA)GC 2101 |UCACUGGU- AAAGCGUUCU UGC|GCCGAU AAUG-GCCGG GACU-----A AGUGA-CC|U 2161 |GCCGAAGCU |GUGG|UAUA U-------(u u/----ua(u ua)uaaa--- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 -----/)--- -----UUAUA GGUAGGGGAG |CGUU-CCGU UCUCGGG-U- GAAGUUUUC- 2521 AC(GUAA)GU G-GGGAUGG| ACGGUACGGA AGUGAGAAUG UUGGC|UUGA GUAACGAAAA 2581 CAUUGG(UGA GAA-U)CCAA UG|CCCCGAA AACCUA-AGG GUUCCUC-CA CUAGG(UUCG 2641 U)CC|AUGGG GGGUUAGU|C AG|GACCUAA GGCUAGGCAA GU(ACACA)A UUUGCGUCGU 2701 CG-AUGG-CA AACAGG(UUA AUAUU)CCUG U|AC|ua-a- -uuaaa-uua ---------- 2761 ---------- ---------- --------gg auc------- ugagggacga ag--gaggcu 2821 aagcugga|a -cu-gu-(-- --uuuuggau u--------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- --------)- g-cagu-|gg aa-------- ---------g 3061 cgu-uuagac ---------- ---------- ---------- ----guugag a-gau-cg(a 3121 a-caaa-aa) cg-|a--ucu uga------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ------gug- 3301 gaggcgua-a ucc|-cua|- ---------- ---------- ---------- --------cu 3361 uuuugg(--u uc-g--)cca aaaag----- ---------- ---------- -------uag 3421 -cuagu--ga uguc-aua-| cuuccaagaa aagcuca--u acaucuuu-- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- aua-auuu-a auua|c|CUG UACCUGAAA- CC(GACACA) 3601 GG|---UAG- GU-UG-GUA- (-GAGAA)-U ACUAA-GG-G GC||GCGAGA GAACUCUCUC 3661 UAAGGAA-CU CGGCAAACUG GCCCCGUAAC (UUCG)GAAG AAGGGGC|GC CCAGga---- 3721 ---------- (-uucau)-- ---------- --uucUUGGG U|C(GC-A)G UGACCAGGCU 3781 CAGG|CGACU GU(UUACCAA AA)ACACAGG UCUCCG|CAA AGUC(GUAA) GACAAUAUAU 3841 GGGGGCUGAC GCC-UGCCCA GU|GCCGGAA GGUUAAGGAA GUUGGUUAcu --------(G 3901 UUAA)----- ---------- ---------- ---------- --------ag gGA-AGCUGA 3961 CGACCGAAGC C|CCGGUGAA C|GGC|GGUC GU(AACUAUA )ACGAUC|C( UAA)GGUAGC 4021 GAAAUUCAUU |GUCGAG(UA AGU)UUCGAC |CUGCACGAA AGGCGUAACG A-UCUGAGCG 4081 CUGUCUCAGA GAGAGGCUCG |GUGAAAUA| GACUUGUCCC G(UG-AAGAU G)CGGACUAC 4141 CUACACCUGG ACAG-AAAGA CCCUAUGA|A GCUUGACUGU |AUCUUGGAA UU|GGGU-UC 4201 GGGCUUUUCU UGCGCAG-CC UAGGUGGGAG GCGUU-GAAG AUUACCU(UC CG)GGGUAGU 4261 UGGAGCCAUC -AGUGAGAGA -CCACU|CU- GGAAGAGCU- AGAAUUCUAA -UGG-GG--A 4321 UCCU(----- --UGA-AUC) -AGGACCCUU GACAGUUUCA GGUGGGCAGU UUAUUUG(GG 4381 G)CGAAU|AC C-UCC(UAAA AGGUAAC)GG AGGU|G|U|G CAAAGGUUCC C|UCAGUCUG 4441 G--(ACGGAA A--)--UCAG ACAUU---GA |GU(G|UAAA G)GC-AAAA- --GGGAG--C 4501 UUGACUGCAA GAC(CUACAA )GUCGAGCAG GGGC(GAAA) GCCGGC|CUU AGUGAUCCGA 4561 CGGUG-CCG( AGUGGA)AGG |GCCGUCGCU CAAC|GGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUGA UCUUCCCCAA GA(GUUCACA )UCGACGGGA AGGUUUGGCA CCUCGAUGUC 4681 |GGCU|C|AU CAC|AUCC|U CGGUCU(GUA GUA)GGUC-C G-AAGGGU|U GGGC(UGUUC 4741 )GCCCAUU-A AAGUGGUACG UGAGCUGGGU UCAAAAC|GU C(GUGA)GAC AGUUUGGUCC 4801 AUAUCC|GGU GUAGG|CGCU AGAGCAUU|G A|GAGUA-GC CUUUCA(UAG UAC(GAGA)G 4861 GA-CC)UGAA AGG|-ACAUG CCAAUUGUGU ACCAGU|UCU CAU(UC-CA) AUGGGAAACG 4921 CUGGGUAGCU ACGCAUGGA- U-AG-AUAAC UGCU(GAAAG CAUCUA)AGU AGGAAGCUAA 4981 ACUC|AAGAU GAGUGCUCU| C-|------( ------)--- ----UA-A-G G|CC|GCGGC 5041 (UAGACAA)G CCGU-UA--- ---------- ---------- -----UAUAG |GUAUC|AGG 5101 UGUACAGUCA (GCAA)UGGC U|UCAGCCG| A|GAUAUACU AA-AGGCCGU --UUG|AUUU 5161 UGAC-----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS chl.C.zebr 5239 bp RNA RNA 11-JAN-191 DEFINITION Chlamydomonas zebra. ACCESSION No information KEYWORDS No information. SOURCE Chlamydomonas zebra. ORGANISM Chlamydomonas zebra. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: Z17233 :X68919,X68920 BASE COUNT 856 a 607 c 840 g 652 t 2284 others ORIGIN 1 |--------- ---------- -----UCAAA UGAA---UUA AGGCGUACGG UGGAGA|CCU 61 -AGG|CACUC AG|AG|ACGA AGAAG-GG|C GCA(GAUA-- ----CC-)G| GCG-AUACGC 121 UUCGGG|GAG CU(------- -----G-GC- AACA------ -----)AGCU UUG-AUCCGG 181 AGAUU|CCCG AA-UAGG(GC AA)CCU|--- ----(----- --ca-uaga) --------AC 241 UACCUAUA(U A-AUUCA--U A)GUU-AGG- ---UAA-Gag g-caAC|CCA GUGAACU|GA 301 (AACA)UCUA AGU-AGCUGG AGGAAAAGAA AGC(AAAC-- )GCG-AU|UC CCGUAGUAGC 361 -(GGCGA)GC GA-ACCGGGA -ACAGCCUAA Accuauguc- ---------- (gaaa---)- 421 ---------- gauguagggg ucgu-gggag gacccccaua aggggcaaua aauuauuacu 481 gcacccaccu uuauaaaggu ggggg----- --gggucaua auuuuaaaaa uuuaaaauuu 541 ua-------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------/--- ---------- 781 ---------- -A-AUACGAA GCAG-C(U-- GAAU)C-CUG -CAC|C(AUA )GAUGG(-UG 841 AAAGU)-CCA GUAGUAaa-- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- -aauaaaauu uaaacuuugu cuaauccc-- -GAGUAGCAU GGGG(CACGU 1141 GAAA)UCCCG UGUGAAUCAG CGAG(GACCA C)CUCGUAAG GCUAA-AUAC UCCUGAGUGA 1201 CCGAUAGCGA AAUAGUACC( ACGA)GGGAA AGGUGAAAA- GAACCCC(UG -UU-)GGGGA 1261 GUGAAAUAGA ACAUGAAACC GU---AUGCU GACAAGCAGU GGGAGCAA-G ---------- 1321 ------(--- uuug--)--- ---------- ----CUU--G -UGACCGCGU GCCU(GUUGA 1381 AG|A)AUGA| GCCGGCGACU UAUAGGAAGU GGC------- -UGGGUU-AA GGa-(----g 1441 ucaca)-uCC -GGAGCCCAA -GC(-GAAA) GCG----AGU CU(GAA-UA) GGGCGua--- 1501 ---------- ---------- ---------- -a-a-uGGUC ACUUCUUAUG GACCCGAACC 1561 CGGGUGAUCU AUUCAUGGC| CAGGAUGAAG CUUGGG(UAA C)ACCAAGUG GAGGUCCGAA 1621 CCGACCGAU( GUUGAAAA)A UCGG|CGGAU GAGCUGUGAA UAG-GGGA(G AAAU)UCCAA 1681 UCGA-ACUCG GAGCUAGCUG GAUCUCCCCG -AAAUGCGU- (UGAG)-GCG CAGC|G-GUA 1741 ACGau----- ---------- ---------g |-aac-|uAU ACUUG|GGGU AA|-AGCUAC 1801 UGU-UUCGAU GC-GG|GCUG C(GAAA-)GU GGUACCA-AG UCGUG-GCAA ACUCAGAAUA 1861 |CAAGA-U-- ---------- ---------- au-GUCu--- uc|-CGUGAA C-CAGUGAGA 1921 CCGUGGGG(G AUAAG)CUUC AU--GGUCAA GAGGG(AAAC AG)CCCAGAU CACCAGCUAA 1981 GGC|CCCU-A AGUG-GUCA- CUAAGUG--G AAAAGGAUGU -GAGAAUGCU GA---AACAA 2041 CCAGGAGGUU UGC(UUAGAA GCA)GCCAC- CCU|--U(CA A)A|GAGUGC (GUAAUA)GC 2101 |UCACUGGU- AAAGCGUUCU UGC|GCCGAU AAUG-GCCGG GACU-----A AGUGA-CC|U 2161 |GCCGAAGCU |GUGA|UAUC G-------(u u/---uau(u uu)auaaa-- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 -----/)--- -----UGAUA GGUAGGGGAG |CGUU-CCGC UCUCGGG-U- GAAGUUUUC- 2521 AC(GUAA)GU G-GGGAUGG| ACGAAGCGGA AGUGAGAAUG UCGGC|UUGA GUAACGAAAA 2581 CAUUGG(UGA GAA-U)CCAA UG|CCCCGAA AACCUA-AGG GUUCCUC-CA CUAGG(UUCG 2641 U)CC|AUGGG GGGUUAGU|C AG|GACCUAA GACUAGGCC- --(-AAAA)- --GGCGUCGU 2701 CG-AUGG-AA AACAGG(UUA AUAUU)CCUG U|AC|ua-a- -uuaaa-uua ---------- 2761 ---------- ---------- --------gg auc------- ugagggacga ag--gaggcu 2821 aagcuaga|a -cu-gu-(-- --uuuuggau u--------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- --------)- g-cagu-|gg aa-------- ---------g 3061 cgu-uuagac ---------- ---------- ---------- ----uuugag a-gau-ag(a 3121 a-caaa-ag) cu-|a--ucu uga------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ------gug- 3301 gagacgug-a ucc|-cua|- ---------- ---------- ---------- --------uu 3361 ugaucc(--u uc-g--)ccg ucuug----- ---------- ---------- -------uag 3421 -cuagc--ga uauc-aua-| cuuccaagaa aagcuca--u acaucua--- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- aua-auuu-a auua|c|CUG UACCUGAAA- CC(GACACA) 3601 GG|---UAG- GU-UG-GUA- (-GAGAA)-U ACCAA-GG-G GC||GCGAGA GAACUCUCUC 3661 UAAGGAA-CU CGGCAAACUG GCCCCGUAAC (UUCG)GAAG AAGGGGC|GC CCUUu----- 3721 ---------- (-gcaa-)-- ---------- ----aAAGGG U|C(GC-A)G UGACCAGGCC 3781 CAGG|CGACU GU(UUACCAA AA)ACACAGG UCUCCG|CAA AGUC(GUAA) GACAAUAUAU 3841 GGGGGCUGAC GCC-UGCCCA GU|GCCGGAA GGUUAAGGAA GUUGGUUAuu uc------(G 3901 -UAA)---ga ---------- ---------- ---------- ---------a aAA-AGCUGA 3961 CGACCGAAGC C|CCGGUGAA C|GGC|GGUC GU(AACUAUA )ACGAUC|C( UAA)GGUAGC 4021 GAAAUUCAUU |GUCGAG(UA AGU)UUCGAC |CUGCACGAA AGGCGUAACG A-UCUGGGCG 4081 CUGUCUCGGA GAGAGGCUCG |GUGAAAUA| GACUUGUCCC G(UG-AAGAU G)CGGACUAC 4141 CUACACCUGG ACAG-AAAGA CCCUAUGA|A GCUUGACUGU |AUCUUGGAA UU|GGGU-UU 4201 GGGCUUUUCU UGCGCAG-CC UAGGUGGGAG GCGUU-GAAG AUUACCU(UC CG)GGGUAAU 4261 CAGAGCCAUC -AUUGAGAGA -CCACU|CU- GGAAGAGCU- AGAAUCCUAA -UGG-GG--A 4321 UCCU(----- --UGA-AUC) -AGGACCCUU GACAGUUUCA GGUGGGCAGU UUAUUUG(GG 4381 G)CGAAU|GC C-UCC(UAAA AGGUAAC)GG AGGC|G|U|G CAAAGGUUCC C|UCAGUCUG 4441 G--(ACGGAA A--)--UCAG ACAUU---GA |GU(G|UAAA G)GC-AAAA- --GGGAG--C 4501 UUGACUGCAA GAC(CUACAA )GUCGAGCAG GGGC(GAAA) GCCGGC|CUU AGUGAUCCGA 4561 CGGUG-CCG( UGUGGA)AGG |GCCGUCGCU CAAC|GGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUGA UCUUCCCCAA GA(GUUCACA )UCGACGGGA AGGUUUGGCA CCUCGAUGUC 4681 |GGCU|C|AU CAC|AUCC|U CGGUCU(GUA GUA)GGUC-C G-AAGGGU|U GGGC(UGUUC 4741 )GCCCAUU-A AAGUGGUACG UGAGCUGGGU UCAAAAC|GU C(GUGA)GAC AGUUUGGUCC 4801 AUAUCC|GGU GUAGG|CGUU AGAGCAUU|G A|GAGUA-GC CUUUCA(UAG UAC(GAGA)G 4861 GA-CC)UGAA AGG|-ACAUG CCAAUUGUGU ACCAGU|UCU CAU(UC-CA) AUGGGAAACG 4921 CUGGGUAGCU ACGCAUGGA- U-AG-AUAAC UGCU(GAAAG CAUCUA)AGU AGGAAGCUAA 4981 ACUC|AAGAU GAGUGCUCU| C-|------( ------)--- ----UA-A-G G|CC|GCGGC 5041 (UAGACAA)G CCGU-UA--- ---------- ---------- -----UAUAG |GUAUC|AGG 5101 UGUACAGUCA (GCAA)UGGC U|UCAGCCG| A|GAUAUACU AA-AGGCCGU --UUG|AUUU 5161 UGAC-----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS chl.C.6672 5239 bp RNA RNA 11-JAN-191 DEFINITION Chlamydomonas sp. 66.72. ACCESSION No information KEYWORDS No information. SOURCE Chlamydomonas sp. 66.72. ORGANISM Chlamydomonas sp. 66.72. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: Z17236; X68923-X68926 BASE COUNT 929 a 632 c 864 g 708 t 2106 others ORIGIN 1 |--------- ---------- -----UCAAA UGAA---UUA AGGCUUACGG CGGAGA|CCU 61 -AGG|CACCC AG|AG|ACGA AGAAG-GG|C GCA(GAUA-- ----CC-)G| GCG-AUACGC 121 UUCGGG|GAG CU(------- -----G-GU- AACA------ -----)AGCU UUG-AUCCGA 181 AGAUC|CCCG AA-UAGG(GC AA)CCU|--- ----(----- --ca--aga) --------AC 241 UUUCUAU-(G A-AUUCA--U A)AGU-AGA- ---AUA-Gag a-caAC|CCG GUGAAUU|GA 301 (AACA)UCUU AGU-AGCUGG AGGAAAAGAA AGC(AAAC-- )GCG-AU|UC CCGUAGUAGC 361 -(GGCGA)GC GA-ACCGGGA -UCAGCCUAA Accugacu-- ---------- (guaaaa-)- 421 ---------- -agaaagggg uagu-gggaa gacuaauuuu uuagagugu- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------/--- ---------- 781 ---------- -A-AGACGAA GCAG-C(U-- GAAU)C-CUG -CAC|C(AUA )GAUGG(-UG 841 AAAGU)-CCA GUAGUUau-- ---aaacauu ugcucucuuu acaaugcaau gcaaucuuug 901 cggagcaaag aaagagaggc uaaaaaagaa gcacgcaugg ccaauuauuu uggcuuuguu 961 uuuggcaaaa uaauagauaa aucuaggcca gc-------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ----gcgcua uaaaaaaagu aauauccc-- -GAGUAGCAU GGGG(CACGU 1141 GGAA)UCCCG UGUGAAUCAG CGAG(GACCA C)CUCGUAAG GCUAA-AUAC UCCUGGGUGA 1201 CCGAUAGUGC AA-AGUACC( GCGA)GGGAA UGGUGAUAA- GAACCCC(UG -UA-)GGGGA 1261 GUGAAAUAGA ACAUGAAACC GU---AAGCU GACAAGCAGU GGGAGGAg-c g--------- 1321 -----g(--- cuucg-)c-- ---------- ---cgc---C -UGACCGCGU GCCU(GUUGA 1381 AG|A)AUGA| GCCAGCGACU UAUAGGAAGU GGC------- -AAGGUU-AA GGa-(----g 1441 ucaaa)-uCC -GGAGCCUUA -GC(-GAAA) GCG----AGU CU(UAA-UA) GGGCGauu-- 1501 ---------- ---------- ---------- aa-a-gaGUC ACUUCCUAUG GACCCGAACC 1561 CGGGUGAUCU AAUCAUGAC| CAGGAUGAAG CUUGGG(UAA C)ACCAAGUG GAGGUCCGAA 1621 CCGACCGAU( GUUGAAAA)A UCGG|CGGAU GAGUUGUGAU UAG-GGGA(G AAAU)UCCAA 1681 UCGA-ACUCG GAGCUAGCUG GAUCUCCCCG -AAAUGCGU- (UGAG)-GCG CAGC|G-GUG 1741 ACUau----- ---------- ---------g |-agc-|uAU -CUAG|AGGU AA|-AGCUAC 1801 UGU-UUCGAU GC-GG|GCUG C(GAAA-)GC GGUACCA-AG UCGUG-GCAA ACUCAGAAUA 1861 |CUAGA-U-- ---------- ---------- acaGCCu--- uc|-AGUCAA C-CAGUGAGA 1921 UGUGCAGG(G AUAAG)CUUG UA--CAUCAA GAGGG(AAAC AG)CCCAGAU CACCAGCUAA 1981 GGC|CCCU-A AAUG-GUCA- CUAAGUG--G AAAAGGAUGU -GAUGUUGCA GA---AACAA 2041 CCAGGAGGUU UGC(UUAGAA GCA)GCAAG- CCU|--U(AA A)A|GAGUGC (GUAAUA)GC 2101 |UCACUGGU- AAAGCGAUAU UGC|GCCGAC AAUG-GCCGG GACU-----A AGUGA-CC|U 2161 |GCCGAAGCU |GUGA|UAUU U-------(g a/---uuuau augcccucuu gcccccccuu 2221 gccccguaag guuccccccc ccaaaua(uu uauuuuauu) uauuuggggg gggggguaaa 2281 uaagggggua ggggcaaaaa uc-------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 -----/)--- -----AAAUA GGUAGGGGAG |CGUU-CCGU UAUCGGG-U- GAAGUUUUC- 2521 AC(GUAA)GU G-AUUAUGG| ACGAAUCGGA AGUGAGAAUG UUGGC|UUGA GUAACGAAAA 2581 CAUUGG(UGA GAA-U)CCAA UG|CCCCGAA AACCUA-AGG GUUCCUC-CA CUAGG(CUCG 2641 U)CC|AUGGG GGGUUAGU|C AG|GUCCUAA GGCUAGUUAG A-(-UUUA)- UCUAAGUCGU 2701 CG-AUGG-AA AACAGG(UUA AUAUU)CCUG U|AC|ug-g- -uuuua-uug ---------- 2761 ---------- ---------- ---------g gaac------ caagggacga ag--gagacu 2821 aaacugaa|a -cu-gc-(-- --uacuggau u--------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- --------)- u-cagu-|gg aa-------- ---------g 3061 cauucaaggu ---------- ---------- ---------- ----guugau a-gcu-ag(a 3121 a-uaaa-aa) cu-|a-ugcu uga------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ------gcu- 3301 gagaugug-a ucc|-cua|- ---------- ---------- ---------- ---------u 3361 acuaua(--c aa-gu-)uau agug------ ---------- ---------- -------uag 3421 ucagu---ga uguc-aaa-| cuuccaagaa aagcuug--a acaccaua-- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- aca-auaa-a auca|c|CUG UACCUGAAA- CC(GACACA) 3601 GG|---UAG- GU-UG-GUA- (-GAGAA)-U ACCAA-GG-G GC||GCGAGA GAACUCUCUC 3661 UAAGGAA-CU CGGCAAACUG GCCCCGUAAC (UUCG)GAAG AAGGGGC|AC CCUCuuucuu 3721 ---------- (-uuaa-)-- -------uca uaaaaGAGGG U|C(GC-A)G UGACCAGGCU 3781 CUGG|GAACU GU(UUAUCAA AA)ACACAGG UCUCCG|CAA AGUC(GUAA) GACGAUAUAU 3841 GGGGGCUGAC GCC-UGCCCA GU|GCCGGAA GGUUAAGGAA GUUGGUUAuu aa------(G 3901 -UAA)---uu ---------- ---------- ---------- ---------a aGA-AGCUGA 3961 CGACCGAAGC C|CCGGUGAA C|GGC|GGUC GU(AACUAUA )ACGAUC|C( UAA)GGUAGC 4021 GAAAUUCAUU |GCCAAG(UA AGU)UUUGGC |CUGCACGAA AGGCGUAAUC A-UCAGAGCG 4081 CUGUCUCGGA GAGAGACUCG |GUGAAAUA| GACUUGUCCC G(UG-AAGAU G)CGGACUAC 4141 CUAUACCUGG ACAG-AAAGA CCCUAUGA|A GCUUGACUGU |AUCCUGGAA UU|GGGU-UC 4201 GGGCUUUUCU UGCGCAG-CC UAGGUGGGAG GCUAU-GAAG GUUCCCU(UC CG)GGGGAAU 4261 UUGAGCCAUC -AUUGAGAGA -CCACU|CU- GGAAGAGCU- AGAAUCCUAA -UGG-UG--A 4321 UCUU(----- --UGA-AUC) -AAGACACUU GACAGUUUCA GGUGGGCAGU UUAUCUG(GG 4381 G)CGGAU|GC C-UCC(UAAA GUGUAAC)GG AGGC|G|U|G CAAAGGUUCU C|UCAGUCUG 4441 G--(ACGGAA A--)--UCAG ACAUU---GA |GU(G|CAAA G)GC-AAAA- --GAGAG--C 4501 UUGACUGUAA GAC(CAACAA )GUCGAGCAG GGGC(GAAA) GCCGGC|CUU AGUGAUCCGA 4561 CGGUG-CCG( UGUGGA)AGG |GCCGUCGCU CAAC|GGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUGA UCUUCCCCAA GA(GUUCACA )UCGACGGGA AGGUUUGGCA CCUCGAUGUC 4681 |GGUU|C|AU CAC|AUCC|U GGAGCG(GCA GUA)CGUU-C C-AAGGGU|U GGGC(UGUUC 4741 )GCCCAUU-A AAGUGGUACG UGAGCUGGGU UCAAAAC|GU C(GUGA)GAC AGUUUGGUCC 4801 AUAUCC|GGU AUAGG|CGUU AGAGCAUU|G A|GAGGA-GC CUUCGA(UAG UAC(GAGA)G 4861 GAUUU)UCGA AAG|-GUAAG CCAAUAGUGU AUCGGU|UAU UUU(UC-CA) AAAGUAAACG 4921 CCGAGUAGCC ACGCUUAUA- G-GG-AUAAC UGCU(GAAAG CAUCUA)AGU AGGAAACCCA 4981 CCUC|AAGAU GAGUGCUCU| CC|------( ------)--- ----AU-UAG G|UC|GCGGC 5041 (AAGACAA)G CCGU-UU--- ---------- ---------- -----AAUAG |GCAUU|AGG 5101 UGUACAAUCA (GUAA)UGGU U|UUAGCCG| A|GAUGUACU AA-AGACCGA --UUG|AUUU 5161 UGAC-----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS (4)-Strept 5239 bp RNA RNA 21-JAN-1998 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5239 others ORIGIN 1 |x~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 61 ~~~~|~~~~~ ~~|~~|~~~~ ~~~~~~~~|~ ~~~(~~~~~~ ~~~~~~~)~| ~~~~~~~~~~ 121 ~~~~~~|~~~ ~~(~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 181 ~~~~~|~~~~ ~~~~~~~(~~ ~~)~~~|~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~(~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~(~~~ )~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~------- 1321 ------~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 1381 ~~|~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 1801 ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~(~~ ~)~|~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~~-~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~-~~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~)~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~-~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~--~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~ // LOCUS chl.M.poly 5239 bp RNA RNA 30-JAN-1986 DEFINITION chloroplast, liverwort. ACCESSION No information KEYWORDS No information. SOURCE chloroplast, liverwort. ORGANISM chloroplast, liverwort. REFERENCE 1 (bases 1 to 5001) AUTHORS No information JOURNAL Sept. 30 1986 STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5239) Corresponding GenBank entry: X04465 Phylo:Eubacteria,Cyanobacteria,chloroplast BASE COUNT 816 a 641 c 874 g 583 t 2325 others ORIGIN 1 |--------- ---------- ----UUCAAA CGAA---AAA GGGCUUACGG UGGAUA|CCU 61 -AGG|CACCC AG|AG|ACGA GGAAG-GG|C GUA(GCAA-- ----GC-)G| ACG-AAAUGC 121 UUCGGG|GAG CU(------- -----G-AA- AAUA------ -----)AGUA UAG-AUCCGG 181 AGAUU|CCCG AA-UAGG(UU AA)CCU|--- ----(----- --uu---ga) -------AAC 241 UG-CUGCU(G A-AUUCA--U A)GGC-AGA- ---CAA-gag a-caAC|CUG GCGAACU|GA 301 (AACA)UCUU AGU-AGCCAG AGGAAAAGAA AGC(AAAA-- )GCG-AU|UC UCGUAGUAGC 361 -(GGCGA)GC GA-AAUGGGA -ACAGCCUAA Accgu----- ---------- (gaaa---)- 421 ---------- ----acgg-g uugu-ggggg agcuaa---- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------a uaagug---- 781 --uuguguug cu-aggcGAA gcag-u(u-- gagu)c-cug -cac|c(cua )gaUGG(-UG 841 AAAGU)-CCA GUAaccgaaa gcagcacuag cuua------ ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- -------ggc ucuaaccc-- -GAGUAGCAU GGGG(CACGU 1141 GGAA)UCCCG UGUGAAUCAG CAAG(GACCA C)CUUGUAAG GCUAA-AUAC UCCUGGGUGA 1201 CCGAUAGCGA AGUAGUACC( GUGA)GGGAA AGGUGAAAA- GAACCCC(ca -uc-)GGGGA 1261 GUGAAAUAGA ACAUGAAACC GU---AAGCU CCCAAGCAGU GGGAGGAG-A a--------- 1321 ------(--- uuga--)--- ---------- ---aUCU--C -UGACCGCGU GCCU(GUUGA 1381 AG|A)AUGA| GCCGGCGACU UAUAGGCAGU GGC------- -CUGGUU-AA GGg-(----- 1441 agccc)-aCC -GGAGCCGUA -GC(-GAAA) GCG----AGU CU(UCU-UA) GGGCAa---- 1501 ---------- ---------- ---------- -----uuGUC ACUGCUUAUG GACCCGAACC 1561 UGGGUGAUCU AUCCAUGAC| CAGGAUGAAG CUUGGG(UGA A)ACUAAGUG GAGGUCCGAA 1621 CCGACUGAU( GUUGAAAA)A UCAG|CGGAU GAGUUGUGGU UAG-GGGU(G AAAU)GCCAC 1681 UCGA-ACCCA GAGCUAGCUG GUUCUCCCCG -AAAUGCGU- (UGAG)-GCG CAGC|a-GUU 1741 GACu------ ---------- ---------g |-gac-|uAU -CUAG|GGGU AA|-AGC-AC 1801 UGU-UUCGGU GC-GG|GCUG C(gaga-)GC GGUACCA-AA UCGAG-GCAA ACUCUGAAUA 1861 |CUAGG-Uag gacuucc--- -uauuaauag gaagua---a gg|-GUCA-G C-cAGUGAGA 1921 CAGUGGGG(G AUAAG)CUUC AU--UGUCGA GAGGG(GAAC AG)CCCAGAU CACCAGCUAA 1981 GGC|CCCU-A AAUG-ACCG- CUCAGUG--G UAAAGGAGGU -AGGAGUGCA AA---GACAG 2041 CCAGGAGGUU UGC(CUAGAA GCA)GCCAC- CCU|--U(GA A)A|GAGUGC (GUAAUA)GC 2101 |UCACUGAU- CAAGCGCUCU UGC|GCCGAA GAUG-AAUGG GACU-----A AGCGG-UC|U 2161 |GCCGAAGCU |GUGG|gaug uc------(a aaa------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ------)--- ----uacauc GGUAGGGGAG |CGUU-CCGC CUUAGGG-A- GAAGCAUC-- 2521 ac(GUGA)GC A-GGUGUGG| ACGAAGCGGA AGCGAGAAUG UCGGC|UUGA GUAACGCAAA 2581 CAUUGG(UGA GAA-U)CCAA UG|CCCCGAA AACCUA-AGG GUUCCUC-CG CAAGG(UUCG 2641 U)CC|ACGGA GGGUGAGU|C AG|GGCCUAA GAUCAGGCC- --(-GAAA)- --GGCGUAGU 2701 CG-AUGG-AC AACAGG(CAA AUAUU)CCUG U|AC|ua-c- -cccuu-guu ---------- 2761 ---------- ---------- --------gg ucc------- cgagggacga -g--gaggcu 2821 a-gguua-|g -cc-gaa(-- ag--augg-u -u-------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- --------)a u-cggu-|uc aa-------- ---------g 3061 gaugcaaggu gaauucccuu gaaauuuuca aggguaaa-a a-------ag a-ggu-ag(u 3121 g-aa---a-) au-|g--cuu cc-------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- -----agcc- 3301 aauguccg-a gua|cca-|- ---------- ---------- ---------- ---------- 3361 -agcac(--u ac-g--)gu- cu-------- ---------- ---------- -------gaa 3421 guaauu--aa ugcc-aca-| cucccaagaa aagcucg--a acgaccuua- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- -aa-caagug ggua|C|CUG UACCCGAAA- CC(GACACA) 3601 GG|---UAG- GU-AG-GUA- (-GAGAA)-U ACCUA-GG-G GC||GCGAGA UAACUCUCUC 3661 UAAGGAA-CU CGGCAAAAUA GCCCCGUAAC (UUCG)GGAG AAGGGGU|GC CUCC------ 3721 --------u- (-cuaaa)-a ---------- -----GGAGG U|C(GC-A)G UGACCAGGCC 3781 CAGG|CGACU GU(UUACCAA AA)ACACAGG UCUCCG|CAA AGUC(GUAA) GACCAUGUAU 3841 GGG-GCUGAC GCC-UGCCCA GU|GCCGGAA GGUUAAGGAA GUUGGUGacc ug------(A 3901 -UGA)---ca ---------- ---------- ---------- ---------g gga-AGCCAG 3961 CGACUGAAGC C|CCGGUAAA C|GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC 4021 GAAAUUCCUU |GUCGGG(UA AGU)UCCGAC |CCGCACGAA AGGCGUAACG A-UCUGGGCA 4081 CUGUCUCGGA GAGAGACUCG |GUGAAAUA| GACAUGU-CU G(UG-AAGAU G)CGGACUAC 4141 CUGCACCUGG ACAG-AAAGA CCCUAUGA|A GCUUUACUGU |UCCCUGGGA UU|GGCU-UU 4201 GGGUUUUUCU UGCGCAG-CU UAGGUGGAAG GCAAA-GAAG Gccccu-(uc ug)-ggcggu 4261 gGGAG-CAUC -AGUGAAAUA -CCACU|CU- AGAAGAGCU- AGAAUUCUAA -CCU-UG--U 4321 GUCA(----- aaauu-uac) -GGGCCAAGG GACAUUCUCA GGUAGACAGU UUCUAUG(GG 4381 G)CGUAG|GC C-UCC(CAAA AGGUAAC)GG AGGU|G|U|G CAAAGGUUUC C|UCAGGCUG 4441 G--(ACGGAA A--)--UCAG CCUUC---GA |GU(G|CAAA G)GC-AGAA- --GGGAG--C 4501 UUGACUGCAA GAC(AUACCC )GUCGAGCAG GGAC(GAAA) GUCGGC|CUU AGUGAUCCGA 4561 CGGUA-CCA( AGUGGA)AGG |GCCGUCGCU CAAC|GGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUGA UCUUCCCCAA GA(GUUCACA )UCGACGGGA AGGUUUGGCA CCUCGAUGUC 4681 |GGCU|C|UU CGC|CACC|U GGGGCG(GUA GUA)CGUU-C C-AAGGGU|U GGGC(UGUUC 4741 )GCCCAUU-A AAGCGGUACG UGAGCUGGGU UCAGAAC|GU C(GUGA)GAC AGUUCGGUCC 4801 AUAUCC|GGU GUGGG|CGUU AGAGCAUU|G A|GAGGA-CC UUUCCC(UAG UAC(GAGA)G 4861 GA-CC)GGGA AGG|-ACGCA CCUCUGGGUU ACCAGU|UAU CGU(GC-CC) ACGGUAaacG 4921 CUGGGUAGCC AAGUGCGGA- -CGG-AUAAC UGCU(GAAAG CAUCUA)AGU AGGAAGCCCA 4981 CCUC|AAGAU GAGUGCUCU| CC|U-----( -//---)--- -----U-AAG G|UC|ACGGC 5041 (AAGACUA)G CCGU-uua-- ---------- --------uu uuuacGAUAG |GUGCC|AAG 5101 UGGAAGUGCA (GUAA)UGUA U|GUAGCUG| A|GGCAUCCU AACAGACCGA --gag|AUUU 5161 GAAC-----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS chl.P.thun 5239 bp RNA RNA 11-JAN-191 DEFINITION Chloroplast Pinus thunbergii. ACCESSION No information KEYWORDS No information. SOURCE Chloroplast Pinus thunbergii. ORGANISM Chloroplast Pinus thunbergii. REFERENCE 1 (bases 1 to 5001) AUTHORS sudzuki,J., Nakashima,K., Tsudzuki,T., Hiratsuka,J., Shibata,M., JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: D17510 LOCUS PINCPTRPG 119707 bp ds-DNA PLN 13-AUG-1994 DEFINITION Complete sequence of black pine (Pinus thunbergii) chloroplast DNA. ACCESSION D17510 KEYWORDS 16S ribosomal RNA; 23S ribosomal RNA; 4.5S ribosomal RNA; 5S ribosomal RNA; H+ - K+ ATPase beta subunit; RNA polymerase alpha-subunit; RNA polymerase beta subunit; RNA polymerase beta' subunit; RNA polymerase beta-2 subunit; RubisCO large subunit; cytochrome B6; cytochrome f; initiation factor; maturase; protochlorophyllide reductase; ribosomal protein L14; ribosomal protein L16; ribosomal protein L20; ribosomal protein L22; ribosomal protein L23; ribosomal protein L32; ribosomal protein L33; ribosomal protein L36; ribosomal protein S11; ribosomal protein S12; ribosomal protein S14; ribosomal protein S15; ribosomal protein S18; ribosomal protein S19; ribosomal protein S2; ribosomal protein S3; ribosomal protein S4; ribosomal protein S7; ribosomal protein S8. SOURCE Chloroplast Pinus thunbergii (organelle Chloroplast Pinus thunbergii) DNA. ORGANISM Chloroplast Pinus thunbergii Eukaryota; Plantae; Embryobionta; Pinophyta; Pinicae; Pinatae; Pinaceae. REFERENCE 1 (sites) AUTHORS Tsudzuki,J., Nakashima,K., Tsudzuki,T., Hiratsuka,J., Shibata,M., Wakasugi,T. and Sugiura,M. TITLE Chloroplast DNA of black pine retains a residual inverted repeat lacking rRNA genes: nucleotide sequences of trnQ, trnK, psbA, trnI and trnH and the absence of rps16 JOURNAL Mol. Gen. Genet. 232, 206-214 (1993) STANDARD full automatic REFERENCE 2 (sites) AUTHORS Wakasugi,T., Tsudzuki,J., Ito,S., Nakashima,K., Tsudzuki,T. and Sugiura,M. TITLE Loss of ndh genes as revealed by sequencing the entire chloroplast genome of black pine, Pinus thunbergii JOURNAL Unpublished (1994) STANDARD full automatic REFERENCE 3 (bases 1 to 119707) AUTHORS Tsudzuki,J., Ito,S., Tsudzuki,T., Wakasugi,T. and Sugiura,M. TITLE A new gene encoding tRNA pro (GGG) is present in the chloroplast genome of black pine: a compilation of 32 tRNA genes from black pine chloroplasts JOURNAL Curr. Genet. 26, 153-158 (1994) STANDARD full automatic COMMENT Submitted (27-Aug-1993) to DDBJ by: Masahiro Sugiura Center for Gene Reseach Nagoya University Chikusa-ku, Nagoya 464-01 Japan Phone: 052-781-5111 x3448 Fax: 052-782-3849. NCBI gi: 529643 FEATURES Location/Qualifiers source 1..119707 /organism="Chloroplast Pinus thunbergii" /chloroplast /sequenced_mol="DNA" BASE COUNT 36668 a 23069 c 23013 g 36957 t ORIGIN BASE COUNT 790 a 678 c 900 g 556 t 2315 others ORIGIN 1 |--------- ---------- ----UUCAAA CGAG---GAA GGGCUUACGG UGGAUA|CCU 61 -AGG|CACCC AG|AG|ACGA GGAAG-GG|C GUG(GUAA-- ----GC-)G| ACG-AAAUGC 121 UUCGGG|GAG UU(------- -----G-AA- AAUU------ -----)AGCA UAG-AUCCGG 181 AGAUU|CCCG AA-UAGG(UU AA)CCU|--- ----(----- --uu--uuc) --------AC 241 UG-CUGCU(G A-AUCCA--U G)GGC-AGG- ---CAA-Gag a-caAC|CUG GUGAACU|GA 301 (AACA)UCUU AGU-AGCCAG AGGAAUAGAA AGC(AAAA-- )GCG-AU|UC CCGUAGUAGC 361 -(GGCGA)GC GA-AAUGGGA -GCAGCCUAA Accgu----- ---------- (gaaa---)- 421 ---------- ----acgggg uugu-gggag agcaca---- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -------aua uaagcu---- 781 --cugugcug cu-aggcGAA gcgg-u(u-- gagu)c-cug -cac|c(cua )gaUGG(-UG 841 AGAGU)-CCA GUAgccgaaa gcaucauugg cuua------ ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- -------cgc ucuaaccc-- -GAGUAGCAU GGGG(CACGU 1141 GGAA)UCCCG UGUGAAUCAG CAAG(GACCA C)CUUGCAAG GCUAA-AUAC UCCUGGGUGA 1201 CCGAUAGCGA AGUAGUACC( GUGA)GGGAA AGGUGAAAA- GAACCCC(ca -uc-)GGGGA 1261 GUGAAAUAGA ACAUGAAACC GU---AAGCU CCCAAGCAGU GGGAGGAA-a ---------- 1321 ------(-au uaga--)--- ---------- ----uCU--C -UGACCGCGU GCCU(GUUGA 1381 AG|A)AUGA| GCCGGCGACU UAUAGGCAGU GGC------- -UUGGUU-AA GGG-(----- 1441 aaccc)-aCC -GGAGCCGUA -GC(-GAGA) GCG----AGU CU(UCA-UG) GGGCAa---- 1501 ---------- ---------- ---------- -----uuGUC ACUGCUUAUG GACCCGAACC 1561 UGGGUGAUCU AUCCAUGAC| CAGGAUGAAG CUUGGG(UGA A)ACUAAGUG GAGGUCCGAA 1621 CCGACUGAU( GUUGAAAA)A UCAG|CGGAU GAGUUGUGGU UAG-GGGU(G AAAU)GCCAC 1681 UCGA-ACCCA GAGCUAGCUG GUUCUCCCCG -AAAUGCGU- (UGAG)-GCG CAGC|A-GUU 1741 GACu------ ---------- ---------g |-gac-|cau -cuag|GGGU AA|-AGC-AC 1801 UGU-UUCGGU AC-GG|GCCA C(gaga-)GC GGUACCA-AA UCGAG-GCAA ACUCUGAAUA 1861 |CUAGA-Uua --cccca--- ---auaaaag ggggua---a gg|-GUCA-A C-CAGUGAGA 1921 CGAUGGGG(G AUAAG)CUUC AU--CGUCGA GAGGG(GAAC AG)CCCAGAU CACCAGCUAA 1981 GGC|CCCU-A AAUG-ACCG- CUCAGUG--A UGAAGGAAGU -ACGAGUGCA AA---GACAG 2041 CCAGGAGGUU UGC(CUAGAA GCA)GCCAA- CCU|--U(GA A)A|GAGUGC (GUAAUA)GC 2101 |UCACUGAU- CGAGCGCUCG UGC|GCCGAA GAUG-AACGG GACU-----A AGCGA-UC|U 2161 |GCCGAAGCU |GUGG|gaug ua------(a aaa------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ------)--- ----uacauc GGUAGGGGAG |CGUU-CCGC CUCAGAG-G- GAAGCACCG- 2521 GC(GCGA)GC A-gGUGUGG| ACGAAGCGGA AGCGAGAAUG UCGGC|UUGA GUAACGCAAA 2581 CAUUGG(UGA GAA-U)CCAA UG|CCCCGAA AACCUA-AGG GUUCCUC-CG CAAGG(UUCG 2641 U)CC|ACGGA GGGUGAGU|C AG|GGCCUAA GAUCAGGCC- --(-GAAA)- --GGCGUAGU 2701 CG-AUGG-AC AACAGG(UGA AUAUU)CCUG U|AC|ua-c- -cccuu-guu ---------- 2761 ---------- ---------- --------gg ucc------- cgagggacgg ag--gaggcu 2821 a-gguua-|g -cc-gaa(-- ag--augg-u -u-------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- --------)a u-cggu-|uc aa-------- ---------g 3061 gacgcaaggu ua---cccu- --uuu---c- aggguaag-- a-------ag g-ggu-ag(a 3121 g-aa---a-) au-|g--ccu cg-------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- -----agcc- 3301 aauguccg-a gua|cua-|- ---------- ---------- ---------- ---------- 3361 -agcgc(--u ac-a--)gcg cu-------- ---------- ---------- -------gaa 3421 guaacc--ca ugcc-aua-| cucccaggaa aagcucg--a acgaccuuc- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- -aa-caaaag ggua|C|CUG UACCCGAAA- CC(GACACA) 3601 GG|---UAG- GU-AG-GUA- (-GAGAA)-U ACCUA-GG-G GC||GCGAGA CAACUCUCUC 3661 UAAGGAA-CU CGGCAAAAUA GCCCCGUAAC (UUCG)GGAG AAGGGGU|GC CUCC------ 3721 ---------- (-uca--)-- ---------- -----GGAGG U|C(GC-A)G UGACCAGGCC 3781 CGGG|CGACU GU(UUACCAA AA)ACACAGG UCUCCG|CAA AGUC(GUAA) GACCAUGUAU 3841 GGGGGCUGAC GCC-UGCCCA GU|GCCGGAA GGUUAAGGAA GUUGGUgacc ug------(A 3901 -UGA)---cg ---------- ---------- ---------- ---------g gga-aGCCAG 3961 CGACCGAAGC C|CCGGUGAA C|GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC 4021 GAAAUUCCUU |GUCGGG(UA AGU)UCCGAC |CCGCACGAA AGGCGUAACG A-UCUGGGCA 4081 CUGUCUCGGA GAGAGACUCG |GUGAAAUA| GACAUGU-CU G(UG-AAGAU G)CGGACUAC 4141 CUGCACCUGG ACAG-AAAGA CCCUAUGA|A GCUUUACUGU |UCCCUGGGA UU|GUCU-UU 4201 GGGUUCUUCU UGCGCAG-CU UAGGUGGAGG GCGAA-GAAG GCCCCCU(UC CG)GGGGGGC 4261 CUGAGCCACC -AGUGAGAUA -CCACU|CU- GGAAGAGCU- AGAAUUCUAA -CCU-UG--C 4321 GUCA(----- ggacc-uac) -GGGCCAAGG GACAGUCUCA GGUAGACAGU UUCUAUG(GG 4381 G)CGUAG|GC C-UCC(CAAA AGGUAAC)GG AGGC|G|U|G CAAAGGUUUC C|UCGGGCCG 4441 G--(ACGGAA A--)--UCGG CCCUC---GA |GU(G|CAAA G)GC-AGAA- --GGGAG--C 4501 UUGACUGCAA GAC(CCACCC )GUCGAGCAG GGAC(GAAA) GUCGGC|CUU AGUGAUCCGA 4561 CGGUG-CCG( AGUGGA)AGG |GCCGUCGCU CAAC|GGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUGA UCUUCCCCAA GA(GUUCACA )UCGACGGGA AGGUUUGGCA CCUCGAUGUC 4681 |GGCU|C|UU CGC|CACC|U GGGGCG(GUA GUA)CGUU-C C-AAGGGU|U GGGC(UGUUC 4741 )GCCCAUU-A AAGCGGUACG UGAGCUGGGU UCAGAAC|GU C(GUGA)GAC AGUUCGGUCC 4801 AUAUCC|GGU GCGGG|CGUU AGAGCAUU|G A|GAGGA-CC UUUCCC(UAG UAC(GAGA)G 4861 GA-CC)GGGA AGG|-ACGCA CCUCUGGUGU ACCAGU|UAU CGU(GC-CC) ACGGUAGACG 4921 CUGGGUAGCC AAGUGCGGA- GCGG-AUAAC UACU(GAAAG CAUAUA)AGU AGAAAGCCCA 4981 CCCC|AAGAU GAGUGCUCU| CC|U-----( -//---)--- ----AU-AAG G|UC|ACGGC 5041 (GAGACGA)G CCGU-uua-- ---------- --------ua auuauGAUAG |GUGUC|AAG 5101 UGGAAGUGCA (GUGA)UGUA U|GCAGCUG| A|GGCAUCCU AACAGACCGA --GAG|AUUU 5161 GAAC-----| cuuguuccua caugacc~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS chl.O.sa.1 5239 bp RNA RNA 11-JAN-191 DEFINITION Chloroplast Oryza sativa. ACCESSION No information KEYWORDS No information. SOURCE Chloroplast Oryza sativa. ORGANISM Chloroplast Oryza sativa. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: X15901 X15901 Mol. Gen. Genet. 217:185-194(1989). BASE COUNT 801 a 691 c 930 g 557 t 2260 others ORIGIN 1 |--------- ---------- ----UUCAAA AGAG---GAA AGGCUUGCGG UGGAUA|CCU 61 -AGG|UACCC AG|AG|ACGA GGAAG-GG|C GUA(GCAA-- ----GC-)G| ACG-AAAUGC 121 UUCGGG|GAG UU(------- -----G-AA- AAUA------ -----)AGCA UAG-AUCCGG 181 AGAUU|CCCA AA-UAGG(UC AA)CCU|--- ----(----- --uu--uga) --------AC 241 UGCCUGCU(G A-AUCCA--U G)AGC-AGG- ---CAA-gag a-caAC|CUG GCGAACU|GA 301 (AACA)UCUU AGU-AGCCAG AGGAAAAGAA AGC(AAAA-- )GCG-AU|UC CCGUAGUAGC 361 -(GGCGA)GC GA-AAUGGGA -GCAGCCUAA Accgu----- ---------- (gaaa---)- 421 ---------- ----acgggg uugu-gggag agcaau---- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------a caagcg---- 781 --uugugcug cu-aggcGAA GcGG-u(u-- gagu)g-ccg -cac|c(cua )gaUGG(-CU 841 AAAGU)-CCA GUAgccgaaa gcaucacuag cuua------ ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- -------cgc ucugaccc-- -GAGUAGCAU GGGG(CACGU 1141 GGAA)UCCCG UGUGAAUCAG CAAG(GACCA C)CUUGCAAG GCUAA-AUAC UCCUGGGUGA 1201 CCGAUAGCGA AGUAGUACC( GUGA)GGGAA AGGUGAAAA- GAACCCC(ca -gu-)GGGUA 1261 GUGAAAUAGA ACGUGAAACC GUgcuGAGCU CCCAAGCAGU GGGAGGGG-A a--------- 1321 ------(--- agug--)--- ---------- ---aUCU--C -UGACCGCGU GCCU(GUUGA 1381 AG|A)AUGA| GCCGGCGACU CAUAGGCAGU GGC------- -UUGGUU-AA GGGa(-acgg 1441 aaccc)-aCC -GGAGCCGUA -GC(-GAAA) GCG----AGU CU(UCA-UA) GGGCGa---- 1501 ---------- ---------- ---------- -----uuGUC ACUGCUUAUG GACCCGAACC 1561 UGGGUGAUCU AUCCAUGAC| CAGGAUGAAG CUUGGA(UGA A)ACUAAGCA GAGGUCCGAA 1621 CCGACUGAU( GUUGAAGA)A UCAG|CGGAU GAGUUGUGGU UAG-GGGU(G AAAU)GCCAC 1681 UCGA-ACCCA GAGCUAGCUG GUUCUCCCCG -AAAUGCGU- (UGAG)-GCG CAGC|A-GUU 1741 GACu------ ---------- ---------g |-gac-|-AU -CUAG|GGGU AA|-AGC-AC 1801 UGU-UUCGGU GC-GG|GCUG C(gcga-)GC GGUACCA-AA UCGAG-GCAA ACUCUGAAUA 1861 |CUAGA-Uau gacccaa--- -a-aauaaca gggguc---a ag|-GUCG-G C-cAGUGAGA 1921 CGAUGGGG(G AUAAG)CUUC AU--CGUCGA GAGGG(AAAC AG)CCCGGAU CACCAGCUAA 1981 GGC|CCCU-A AAUG-ACCG- CUCAGUG--A UAAAGGAGGU -GGGGGUGCA AA---GACAG 2041 CCAGGAGGUU UGC(CUAGAA GCA)GCCAC- CCU|--U(UA A)A|GAGUGC (GUAAUA)GC 2101 |UCACUGAU- CGAGCGCCCU UGC|GCUGAA GAUG-AACGG GGCU-----A AGCGA-UC|U 2161 |GCCGAAGCU |GUGG|gaug uc------(a aaa------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ------)--- ----ugcauc GGUAGGGGAG |CGUU-CCGC CUUAGAG-G- GAAGCAACC- 2521 GC(GAAA)GC G-GGGGUCG| ACGAAGCGGA AGCGAGAAUG UCGGC|UUGA GUAACGAAAA 2581 CAUUGG(UGA GAA-U)CCAA UG|CCCCGAA AACCCA-AGG UUUCCUC-CG CAAGG(UUCG 2641 U)CC|ACGGA GGGUGAGU|C AG|GGCCUAA GAUCAGGCC- --(-GAAA)- --GGCGUAGU 2701 CG-AUGG-AC AACAGG(UCA AUAUU)CCUG U|AC|ua-c- -cccuu-guu ---------- 2761 ---------- ---------- --------gg uac------- ggagggacgg ag--gaggcu 2821 a-gguua-|g -cc-gaa(-- ag--augg-u -u-------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- --------)a u-aggu-|uu aa-------- ---------g 3061 gacacaaggu ga---cccu- gcuuuuu-c- aggguaag-- a-------ag g-ggu-ag(a 3121 g-aa---a-) au-|g--ccu cg-------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- -----agcc- 3301 gagguccg-a gua|cca-|a gcgcugcagc gcugaag--- ------uaug agccccgugg 3361 acuagc(--c au-u--)gcu ucuccacgag gcucauacca ggcgcuacgg cgugaaguau 3421 guaacc--ca ugcc-aua-| cucccaggaa aagcucg--a acgaccuuc- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- -aa-caaagg ggua|C|CUG UACCCGAAA- CC(GACACA) 3601 GG|---UGG- GU-AG-GUA- (-GAGAA)-U ACCUA-GG-G GC||GCGAGA CAACUCUCUC 3661 UAAGGAA-CU CGGCAAAAUA GCCCCGUAAC (UUCG)GGAG AAGGGGU|GC CCCC------ 3721 --------u- (-cgcaa)aa ---------- -----GGGGG U|C(GC-A)G UGACCAGGCC 3781 CGGG|CGACU GU(UUACCAA AA)ACACAGG UCUCCG|CAA AGUC(GUAA) GACCAUGUAU 3841 GGGGGCUGAC GCC-UGCCCA GU|GCCGGAA -GUCAAGGAA GUUGGUgaac ug------(A 3901 -UGA)---ca ---------- ---------- ---------- ---------g gga-aGCCGG 3961 CGACCGAAGC C|CCGGUGAA C|GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC 4021 GAAAUUCCUU |GUCGGG(UA AGU)UCCGAC |CCGCACGAA AGGCGUAACG A-UCUGGGCA 4081 CUGUCUCGGA GAGAGACUCG |GUGAAAUA| GACAUGU-CU G(UG-AAGAU G)CGGACUAC 4141 CUGCACCUGG ACAG-AAAGA CCCUAUGA|A GCUUUACUGU |UCCCUGGGA UU|GGCU-UU 4201 GGGCCUUUCC UGCGCAG-CU UAGGUGGAAG GCGAA-GAAG G--CCCU(UC CG)GGGGGGC 4261 CCGAGCCAUC -AGUGAGAUA -CCACU|CU- GGAAGAGCU- CGGAUUCUAA -CCU-UG--U 4321 GUCA(----- agacc-cgc) -GGGCCAAGG GACAGUCUCA GGUAGACAGU UUCUAUG(GG 4381 G)CGUAG|GC C-UCC(CAAA AGGUAAC)GG AGGC|G|U|G CAAAGGUUUC C|UCGGGCCA 4441 G--(ACGGAC A--)--UUGG UCCUC---GA |GU(G|CAAA G)GC-AGAA- --GGGAG--C 4501 UUGACUGCAA GAC(UCACCC )GUCGAGCAG AGAC(GAAA) GUCGGC|CUU AGUGAUCCGA 4561 CGGUG-CCG( AGUGGA)AGG |GCCGUCGCU CAAC|GGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUGA UCUUCCCCAA GA(GUCCACA )UCGACGGGA AGGUUUGGCA CCUCGAUGUC 4681 |GGCU|C|UU CGC|CACC|U GGAGCU(GUA GGU)GGUU-C C-AAGGGU|U GGGC(UGUUC 4741 )GCCCAUU-A AUGCGGUACG UGAGCUGGGU UCAGAAC|GU C(GUGA)GAC AGUUCGGUCC 4801 AUAUCC|GGU GUGGG|CGUU AGAGCAUU|G A|GAGGA-CC UUUCCC(UAG UAC(GAGA)G 4861 GA-CC)GGGA AGG|-ACGCA CCUCUGGUGU ACCAGU|UAU CGU(GC--U) ACGGUAaacG 4921 CUGGGUAGCC AAGUGCGGA- GAGG-AUAAC UGCU(GAAAG CAUAUA)AGU AGUAAGCCCA 4981 CCCC|AAGAU GAGUGCUCU| CU|------( -//---)--- -----U-AAG G|UA|GCGGC 5041 (GAGACGA)G CCGU-uua-- ---------- ---------- -----AAUAG |GUGUC|AAG 5101 UGGAAGUGCA (GUGA)UGUA U|GCAGCUG| A|GGCAUCCU AAC-GAACGA --ACG|AUUU 5161 GAAC-----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS chl.O.sa.2 5239 bp RNA RNA 17-JUN-1996 DEFINITION Chloroplast Oryza sativa subsp. indica. subsp. indica large ribosomal RNA gene, chloroplast gene encoding chloroplast rRNA, partial sequence; . ACCESSION U49840 KEYWORDS . SOURCE Chloroplast Oryza sativa subsp. indica. subsp. indica large ribosomal RNA gene, chloroplast gene encoding chloroplast rRNA, partial sequence. ORGANISM Chloroplast Oryza sativa subsp. indica. REFERENCE 1 (bases 1 to 1130) AUTHORS Attasart,P. and Sonthayanon,B. TITLE Partial sequence of chloroplast 23S ribosomal RNA from indica rice JOURNAL J. Sci. Soc. Thailand 22, 89-94 (1996) STANDARD No information REFERENCE 2 (bases 1 to 1130) AUTHORS Sonthayanon,B. TITLE Direct Submission JOURNAL Submitted (23-FEB-1996) Burachai Sonthayanon, Biochemistry, Mahidol U. Fac. Sci., Rama VI Rd., Bangkok 10400, Thailand STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: U49840 BASE COUNT 270 a 284 c 356 g 220 t 4109 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 61 ~~~~|~~~~~ ~~|~~|~~~~ ~~~~~~~~|~ ~~~(~~~~~~ ~~~~~~~)~| ~~~~~~~~~~ 121 ~~~~~~|~~~ ~~(~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 181 ~~~~~|~~~~ ~~~~~~~(~~ ~~)~~~|~~~ ~~~~(~~~~~ ~~~~~~~~~) ~~~~~~~~~~ 241 ~~~~~~~~(~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~|~~ 301 (~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~|~~ ~~~~~~~~~~ 361 ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~)~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~|~(~~~ )~~~~~(~~~ 841 ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~~~)~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~------- 1321 ------(~~~ ~~~~~~)~~~ ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 1381 ~~|~)~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 1441 ~~~~~)~~~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~~~~~~~ ~~(~~~~~~) ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~( ~~~~~~~~)~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~)~~~~ ~~~~|~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~|~~~ ~~~~~|~~~~ ~~|-~~~~~~ 1801 ~~~~~~~~~~ ~~~~~|~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|-~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 1981 ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~|~~~(~~ ~)~|~~~~~~ (~~~~~~)~~ 2101 |~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ 2161 |~~~~~~~~~ |~~~~|~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~(~~~~)~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ 2581 ~~~~~~(~~~ ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 2641 ~)~~|~~~~~ ~~~~~~~~|~ ~~|~~~~~~~ ~~~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~)~~~~ ~|~~|~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~|~ ~~~~~~~(-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 3121 ~~~~~~~~~) ~~-|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~|~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~(~-~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~|~|~~~ ~~~~~~~~~~ ~~(~~~~~~) 3601 ~~|~~~~~~~ ~~-~~~~~~~ (~~~~~~)~~ ~~~~~~~G-G GC||GCGAGA CAACUCUCUC 3661 UAAGGAA-CU CGGCAAAAUA GCCCCGUAAC (UUCG)GGAG AAGGGGU|GC CCCC------ 3721 --------u- (-cgcaa)aa ---------- -----GGGGG U|C(GC-A)G UGACCAGGCC 3781 CGGG|CGACU GU(UUACCAA AA)ACACAGG UCUCCG|CAA AGUC(GUAA) GACCAUGUAU 3841 GGGGGCUGAC GCC-UGCCCA GU|GCCGGAA GGUCAAGGAA GUUGGUgaac ug------(A 3901 -UGA)---cu ---------- ---------- ---------- ---------g gga-aGCCGG 3961 CGACCGAAGC C|CCGGUGAA C|GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC 4021 GAAAUUCCUU |GUCGGG(UA AGU)UCCGAC |CCGCACGAA AGGCGUAACG A-UCUGGGCA 4081 CUGUCUCGGA GAGAGACUCG |GUGAAAUA| GACAUGU-CU G(UG-AAGAU G)CGGACUAC 4141 CUGCACCUGG ACAG-AAAGA CCCUAUGA|A GCUUUACUGU |UCCCUGGGA UU|GGCU-UU 4201 GGGCCUUUCC UGCGCAG-CU UAGGUGGAAG GCGAA-GAAG GCCCCCU(UC CG)GGGGGGC 4261 CCGAGCCAUC -AGUGAGAUA -CCACU|CU- GGAAGAGCU- CGGAUUCUAA -CCU-UG--U 4321 GUCA(----- -gacc-cgc) -GGGCCAAGG GACAGUCUCA GGUAGACAGU UUCUAUG(GG 4381 G)CGUAG|GC C-UCC(CAAA AGGUAAC)GG AGGC|G|U|G CAAAGGUUUC C|UCGGGCCA 4441 G--(ACGGAC A--)--UUGG UCCUC---GA |GU(G|CAAA G)GC-AGAA- --GGGAG--C 4501 UUGACUGCAA GAC(UCACCC )GUCGAGCAG AGAC(GAAA) GUCGGC|CUU AGUGAUCCGA 4561 CGGUG-CCG( AGUGGA)AGG |GCCGUCGCU CAAC|GGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUGA UCUUCCCCAA GA(GUCCACA )UCGACGGGA AGGUUUGGCA CCUCGAUGUC 4681 |GGCU|C|UU CGC|CACC|U GGAGCU(GUA GGU)GGUU-C C-AAGGGU|U GGGC(UGUUC 4741 )GCCCAUU-A AUGCGGUACG UGAGCUGGGU UCAGAAC|GU C(GUGA)GAC AGUUCGGUCC 4801 AUAUCC|GGU GUGGG|CGUU AGAGCAUU|G A|GAGGA-CC UUUCCC(UAG UAC(GAGA)G 4861 GA-CC)GGGA AGG|-ACG-A CCUCUGGUGU ACCAGU|UAU CGU(GC-CU) ACGGUAaacG 4921 CUGGGUAGCC AAGUGCGGA- GAGG-AUAAC UGCU(GAAAG CAUAUA)AGU AGUAAGCCCA 4981 CCCC|AAGAU GAGUGCUCU| CU|c~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ ~|~~|~~~~~ 5041 (~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~|~~~ 5101 ~~~~~~~~~~ (~~~~)~~~~ ~|~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 5161 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS chl.Z.ma.1 5239 bp RNA RNA ~?~???? DEFINITION Zea mays (maize) chloroplast. ACCESSION No information KEYWORDS No information. SOURCE Zea mays (maize) chloroplast. ORGANISM Zea mays (maize) chloroplast. REFERENCE 1 (bases 1 to 1130) AUTHORS No information JOURNAL 2853 (1981) STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5239) Corresponding GenBank entry: Z00028 Phylo:Eubacteria,Cyanobacteria,chloroplast 23S and 4.5S This sequence has a correction at the 2602 position as per Ofengand and Bakin 1996. BASE COUNT 801 a 692 c 930 g 559 t 2257 others ORIGIN 1 |--------- ---------- --GGUUCAAA AGAG---GAA AGGCUUGCGG UGGAUA|CCU 61 -AGG|CACCC AG|AG|ACGA GGAAGaGG|C GUA(GCAA-- ----GC-)G| ACG-AAAUGC 121 UUCGGG|GAG UU(------- -----G-AA- AAUA------ -----)AGCA UAG-AUCCGG 181 AGAUU|CCCA AA-UAGG(UC AA)CCU|--- ----(----- --uu--uga) --------AC 241 UGCCUGCC(G A-AUCCA--U G)AGC-AGG- ---CAA-gag a-caAC|CUG GCGAACU|GA 301 (AACA)UCUU AGU-AGCCAG AGGAAAAGAA AGC(AAAA-- )GCG-AU|UC CCGUAGUAGC 361 -(GGCGA)GC GA-AAUGGGA -GCAGCCUAA Accgu----- ---------- (gaaa---)- 421 ---------- ----acgggg uugu-gggug agcaau---- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------a caagcg---- 781 --uugugcug cu-aggcGAA gcgg-u(u-- gagu)g-ccg -cac|c(cua )gaUGG(-CU 841 AUAGU)-CCA GUAgccgaua gcaucacu-g cuua------ ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- -------cgc ucugaccc-- -GAGUAGCAU GGGG(CACGU 1141 GGAA)UCCCG UGUGAAUCAG CAAG(GACCA C)CUUGCAAG GCUAA-AUAC UCCUGGGUGA 1201 CCGAUAGCGA AGUAGUACC( GUGA)GGGAA AGGUGAAAA- GAACCCC(ca -gu-)GGGUA 1261 GUGAAAUAGA ACGUGAAACC GUgcuGAGCU CCCAAGCAGU GGGAGGGG-A a--------- 1321 ------(--- agug--)--- ---------- ---aUCU--C -UGACCGCGU GCCU(GUUGA 1381 AG|A)AUGA| GCCGGCGACU CAUAGGCAGU GGC------- -UUGGUU-AA GGGa(-augg 1441 aaccc)-aCC -GGAGCCGUA -GC(-GAAA) GCG----AGU CU(UCA-UA) GGGCGa---- 1501 ---------- ---------- ---------- -----uuGUC ACUGCUUAUG GACCCGAACC 1561 UGGGUGAUCU AUCCAUGAC| CAGGAUGAAG CUUGGA(UGA A)ACUAAGCA GAGGUCCGAA 1621 CCGACUGAU( GUUGAAGA)A UCAG|CGGAU GAGUUGUGGU UAG-GGGU(G AAAU)GCCAC 1681 UCGA-ACCCA GAGCUAGCUG GUUCUCCCCG -AAAUGCGU- (UGAG)-GCG CAGC|a-GUU 1741 GACu------ ---------- ---------g |-gac-|-AU -CUAG|GGGU AA|-AGC-AC 1801 UGU-UUCGGU GC-GG|-CUG C(gcga-)GC GGUACCA-AA UCGAG-GCAA ACUCUGAAUA 1861 |CUAGA-Uau gacccaa--- -a-aauaaca gggguc---a ag|-GUCG-G C-cAGUGAGA 1921 CGAUGGGG(G AUAAG)CUUC AU--CGUCGA GAGGG(AAAC AG)CCCGGAU CACCAGCUAA 1981 GGC|CCCU-U AAUG-ACCG- CUCAGUG--A UAAAGGAGGU -GGGGGUGCA AA---GACAG 2041 CCAuGAGGUU UGC(CUAGAA GCA)GCCAC- CCU|--U(UA A)A|GAGUGC (GUAAUA)GC 2101 |UCACUGa-- cUGGCGCCCU UGC|GCUGAA GAUG-AACGG GGCU-----A AGCGA-UC|U 2161 |GCCGAAGCU |GUGG|gaug uc------(a aaa------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ------)--- ----ugcauc GGUAGGGGAG |CGUU-CCGC CUUAGAG-G- GAAGCAAAC- 2521 GC(GAAA)GC G-GGGGUCG| ACGAAGCGGA AGCGAGAAUG UCGGC|UUGA GUAACGAAAA 2581 CAUUGG(UGA GAA-U)CCAA UG|CCCCGAA AACCCA-AGG UUUCCUC-CG CAAGG(UUCG 2641 U)CC|ACGGA GGGUGAGU|C AG|GGCCUAA GAUCAGGCC- --(-GAAA)- --GGCUAAGU 2701 CG-AUGG-AC AACAGG(UCA AUAUU)CCUG U|AC|ua-c- -cccuu-guu ---------- 2761 ---------- ---------- --------gg uac------- ggagggacgg ag--gaggcu 2821 a-gguua-|g -cc-gaa(-- ag--augg-u -u-------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- --------)a u-aggu-|uu aa-------- ---------g 3061 gacacaaggu ga---cccu- gcuu-uuuc- aggguaag-- a-------ag g-ggu-ag(a 3121 g-aa---a-) au-|g--ccu cg-------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- -----agcc- 3301 gagguccg-a gua|cca-|a gcgcugcagc gcgaaag--- ------uaug agccccgugg 3361 acuagc(--c au-u--)gcu ucuccacgag gcucauacca ggcgcuacgg cgcgaaguau 3421 guaacc--ca ugcc-aua-| cucccaggaa aagcucg--a acgaccuuc- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- -aa-caaaag ggua|C|CUG UACCCGAAA- CC(GACACA) 3601 GG|---UGG- GU-AG-GUA- (-GAGAA)-U ACCUA-GG-G GC||GCGAGA CAACUCUCUC 3661 UAAGGAA-CU CGGCAAAAUA GCCCCGUAAC (UUCG)GGAG AAGGGGU|GC CCCC------ 3721 --------u- (-cgcaa)aa ---------- -----GGGGG U|C(GC-A)G UGACCAGGCC 3781 CGGG|CGACU GU(AUACCAA AA)ACACAGG UCUCCG|CAA AGUC(GUAA) GACCAUGUAU 3841 GGGGGCUGAC GCC-UGCCCA GU|GCCGGAA GGUCAAGGAA GUUGGUgaac ug------(A 3901 -UGA)---ca ---------- ---------- ---------- ---------g gga-aGCCGG 3961 CGACCGAAGC C|CCGGUGAA C|GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC 4021 GAAAUUCCUU |GUCGGG(UA AGU)UCCGAC |CCGCACGAA AGGCGUAACG A-UCUGGGCA 4081 CUGUCUCGGA GAGAGGCUCG |GUGAAAUA| GACAUGU-CU G(UG-AAGAU G)CGGACUAC 4141 CUGCACCUGG ACAG-AAAGA CCCUAUGA|A GCUUUACUGU |UCCCUGGGA UU|GGCU-UU 4201 GGGCUUUUCC UGCGCAG-CU UAGGUGGAAG GCGAA-GAAG GCCCCCU(UC CG)GGGGGGC 4261 C-GAGCCAUC -AGUGAGAUA -CCACU|CU- GGAAGAGCUc AGGAUUCUAA -CCU-UG--U 4321 GUCA(----- -gacc-cgc) -GGGCCAAGG GACAGUCUCA GGUAGACAGU UUCUAUG(GG 4381 G)CGUAG|GC C-UCC(CAAA AGGUAAC)GG AGGC|G|U|G CAAAGGUUUC C|UCGGGCCA 4441 G--(ACGGAC A--)--UUGG UCCUC---GA |GU(G|CAAA G)GC-AGAA- --GGGAG--C 4501 UUGACUGCAA GAC(UCACCC )GUCGAGCAG AGAC(GAAA) GUCGGC|CUU AGUGAUCCGA 4561 CGGUG-CCG( AGUGGA)AGG |GCCGUCGCU CAAC|GGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUGA UCUUCCCCAA GA(GUCCACA )UCGACGGGA AGGUUUGGCA CCUCGAUGUC 4681 |GGCU|C|UU CGC|CACC|U GGAGCU(GUA GGU)GGUU-C C-AAGGGU|U GGGC(UGUUC 4741 )GCCCAUU-A AUGCGGUACG UGAGCUGGGU UCAGAAC|GU C(GUGA)GAC AGUUCGGUCC 4801 AUAUCC|GGU GUGGG|CGUU AGAGCAUU|G A|GAGGA-CC UUUCAC(UAG UAC(GAGA)G 4861 GA-CC)GGGA AGG|-ACGCA CCUCUGGUGU ACCAGU|UAU CGU(GC-CU) ACGGUAaacG 4921 CUGGGUAGCC AAGUGUGGA- GAGG-AUAAC UGCc(GAAAG CAUAUA)aGU AGUAAGCCCA 4981 CCCC|AAGAU GAGUGCUCU| CU|------( -//---)--- -----U-AAG G|UA|GCGGC 5041 (GAGACGA)G CCGU-uua-- ---------- ---------- -----AAUAG |GUGUC|AAG 5101 UGGAAGUGCA (GUGA)UGUA U|GCAGCUG| A|GGCAUCCU AAC-GAaCGA --ACG|AUUU 5161 GAAC-----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS chl.Z.ma.2 5239 bp RNA RNA ~?~???? DEFINITION Zea mays (maize) chloroplast. ACCESSION No information KEYWORDS No information. SOURCE Zea mays (maize) chloroplast. ORGANISM Zea mays (maize) chloroplast. REFERENCE 1 (bases 1 to 1130) AUTHORS No information JOURNAL 2853 (1981) STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 5239) Corresponding GenBank entry: X86563 Phylo:Eubacteria,Cyanobacteria,chloroplast 23S and 4.5S Author : Maier,R.M., Neckermann,K., Igloi,G.L. and Kossel,H. Title : by transcript editing Journal : J. Mol. Biol. 251 (5), 614-628 (1995) BASE COUNT 800 a 692 c 930 g 559 t 2258 others ORIGIN 1 |--------- ---------- --GGUUCAAA AGAG---GAA AGGCUUGCGG UGGAUA|CCU 61 -AGG|CACCC AG|AG|ACGA GGAAGaGG|C GUA(GCAA-- ----GC-)G| ACG-AAAUGC 121 UUCGGG|GAG UU(------- -----G-AA- AAUA------ -----)AGCA UAG-AUCCGG 181 AGAUU|CCCA AA-UAGG(UC AA)CCU|--- ----(----- --uu--uga) --------AC 241 UGCCUGCC(G A-AUCCA--U G)AGC-AGG- ---CAA-gag a-caAC|CUG GCGAACU|GA 301 (AACA)UCUU AGU-AGCCAG AGGAAAAGAA AGC(AAAA-- )GCG-AU|UC CCGUAGUAGC 361 -(GGCGA)GC GA-AAUGGGA -GCAGCCUAA Accgu----- ---------- (gaaa---)- 421 ---------- ----acgggg uugu-gggug agcaau---- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------a caagcg---- 781 --uugugcug cu-aggcGAA gcgg-u(u-- gagu)g-ccg -cac|c(cua )gaUGG(-CU 841 AUAGU)-CCA GUAgccgaua gcaucacu-g cuua------ ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- -------cgc ucugaccc-- -GAGUAGCAU GGGG(CACGU 1141 GGAA)UCCCG UGUGAAUCAG CAAG(GACCA C)CUUGCAAG GCUAA-AUAC UCCUGGGUGA 1201 CCGAUAGCGA AGUAGUACC( GUGA)GGGAA AGGUGAAAA- GAACCCC(ca -gu-)GGGUA 1261 GUGAAAUAGA ACGUGAAACC GUgcuGAGCU CCCAAGCAGU GGGAGGGG-A a--------- 1321 ------(--- agug--)--- ---------- ---aUCU--C -UGACCGCGU GCCU(GUUGA 1381 AG|A)AUGA| GCCGGCGACU CAUAGGCAGU GGC------- -UUGGUU-AA GGGa(-augg 1441 aaccc)-aCC -GGAGCCGUA -GC(-GAAA) GCG----AGU CU(UCA-UA) GGGCGa---- 1501 ---------- ---------- ---------- -----uuGUC ACUGCUUAUG GACCCGAACC 1561 UGGGUGAUCU AUCCAUGAC| CAGGAUGAAG CUUGGA(UGA A)ACUAAGCA GAGGUCCGAA 1621 CCGACUGAU( GUUGAAGA)A UCAG|CGGAU GAGUUGUGGU UAG-GGGU(G AAAU)GCCAC 1681 UCGA-ACCCA GAGCUAGCUG GUUCUCCCCG -AAAUGCGU- (UGAG)-GCG CAGC|a-GUU 1741 GACu------ ---------- ---------g |-gac-|-AU -CUAG|GGGU AA|-AGC-AC 1801 UGU-UUCGGU GC-GG|-CUG C(gcga-)GC GGUACCA-AA UCGAG-GCAA ACUCUGAAUA 1861 |CUAGA-Uau gacccaa--- -a-aauaaca gggguc---a ag|-GUCG-G C-cAGUGAGA 1921 CGAUGGGG(G AUAAG)CUUC AU--CGUCGA GAGGG(AAAC AG)CCCGGAU CACCAGCUAA 1981 GGC|CCCU-U AAUG-ACCG- CUCAGUG--A UAAAGGAGGU -GGGGGUGCA AA---GACAG 2041 CCAuGAGGUU UGC(CUAGAA GCA)GCCAC- CCU|--U(UA A)A|GAGUGC (GUAAUA)GC 2101 |UCACUGa-- cUGGCGCCCU UGC|GCUGAA GAUG-AACGG GGCU-----A AGCGA-UC|U 2161 |GCCGAAGCU |GUGG|gaug uc------(a aaa------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ------)--- ----ugcauc GGUAGGGGAG |CGUU-CCGC CUUAGAG-G- GAAGCAAAC- 2521 GC(GAAA)GC G-GGGGUCG| ACGAAGCGGA AGCGAGAAUG UCGGC|UUGA GUAACGAAAA 2581 CAUUGG(UGA GAA-U)CCAA UG|CCCCGAA AACCCA-AGG UUUCCUC-CG CAAGG(UUCG 2641 U)CC|ACGGA GGGUGAGU|C AG|GGCCUAA GAUCAGGCC- --(-GAAA)- --GGCUAAGU 2701 CG-AUGG-AC AACAGG(UCA AUAUU)CCUG U|AC|ua-c- -cccuu-guu ---------- 2761 ---------- ---------- --------gg uac------- ggagggacgg ag--gaggcu 2821 a-gguua-|g -cc-gaa(-- ag--augg-u -u-------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- --------)a u-aggu-|uu aa-------- ---------g 3061 gacacaaggu ga---cccu- gcuu-uuuc- aggguaag-- a-------ag g-ggu-ag(a 3121 g-aa---a-) au-|g--ccu cg-------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- -----agcc- 3301 gagguccg-a gua|cca-|a gcgcugcagc gcgaaag--- ------uaug agccccgugg 3361 acuagc(--c au-u--)gcu ucuccacgag gcucauacca ggcgcuacgg cgcgaaguau 3421 guaacc--ca ugcc-aua-| cucccaggaa aagcucg--a acgaccuuc- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- -aa-caaaag ggua|C|CUG UACCCGAAA- CC(GACACA) 3601 GG|---UGG- GU-AG-GUA- (-GAGAA)-U ACCUA-GG-G GC||GCGAGA CAACUCUCUC 3661 UAAGGAA-CU CGGCAAAAUA GCCCCGUAAC (UUCG)GGAG AAGGGGU|GC CCCC------ 3721 --------u- (-cgcaa)aa ---------- -----GGGGG U|C(GC-A)G UGACCAGGCC 3781 CGGG|CGACU GU(AUACCAA AA)ACACAGG UCUCCG|CAA AGUC(GUAA) GACCAUGUAU 3841 GGGGGCUGAC GCC-UGCCCA GU|GCCGGAA GGUCAAGGAA GUUGGUgaac ug------(A 3901 -UGA)---ca ---------- ---------- ---------- ---------g gga-aGCCGG 3961 CGACCGAAGC C|CCGGUGAA C|GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC 4021 GAAAUUCCUU |GUCGGG(UA AGU)UCCGAC |CCGCACGAA AGGCGUAACG A-UCUGGGCA 4081 CUGUCUCGGA GAGAGGCUCG |GUGAAAUA| GACAUGU-CU G(UG-AAGAU G)CGGACUAC 4141 CUGCACCUGG ACAG-AAAGA CCCUAUGA|A GCUUUACUGU |UCCCUGGGA UU|GGCU-UU 4201 GGGCUUUUCC UGCGCAG-CU UAGGUGGAAG GCGAA-GAAG GCCCCCU(UC CG)GGGGGGC 4261 C-GAGCCAUC -AGUGAGAUA -CCACU|CU- GGAAGAGCUc AGGAUUCUAA -CCU-UG--U 4321 GUCA(----- -gacc-cgc) -GGGCCAAGG GACAGUCUCA GGUAGACAGU UUCUAUG(GG 4381 G)CGUAG|GC C-UCC(CAAA AGGUAAC)GG AGGC|G|U|G CAAAGGUUUC C|UCGGGCCA 4441 G--(ACGGAC A--)--UUGG UCCUC---GA |GU(G|CAAA G)GC-AGAA- --GGGAG--C 4501 UUGACUGCAA GAC(UCACCC )GUCGAGCAG AGAC(GAAA) GUCGGC|CUU AGUGAUCCGA 4561 CGGUG-CCG( AGUGGA)AGG |GCCGUCGCU CAAC|GGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUGA UCUUCCCCAA GA(GUCCACA )UCGACGGGA AGGUUUGGCA CCUCGAUGUC 4681 |GGCU|C|UU CGC|CACC|U GGAGCU(GUA GGU)GGUU-C C-AAGGGU|U GGGC(UGUUC 4741 )GCCCAUU-A AUGCGGUACG UGAGCUGGGU UCAGAAC|GU C(GUGA)GAC -GUUCGGUCC 4801 AUAUCC|GGU GUGGG|CGUU AGAGCAUU|G A|GAGGA-CC UUUCAC(UAG UAC(GAGA)G 4861 GA-CC)GGGA AGG|-ACGCA CCUCUGGUGU ACCAGU|UAU CGU(GC-CU) ACGGUAaacG 4921 CUGGGUAGCC AAGUGUGGA- GAGG-AUAAC UGCc(GAAAG CAUAUA)aGU AGUAAGCCCA 4981 CCCC|AAGAU GAGUGCUCU| CU|------( -//---)--- -----U-AAG G|UA|GCGGC 5041 (GAGACGA)G CCGU-uua-- ---------- ---------- -----AAUAG |GUGUC|AAG 5101 UGGAAGUGCA (GUGA)UGUA U|GCAGCUG| A|GGCAUCCU AAC-GAaCGA --ACG|AUUU 5161 GAAC-----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS chl.C.amer 5239 bp RNA RNA 11-JAN-191 DEFINITION Conopholis americana Chloroplast Conopholis americana. ACCESSION No information KEYWORDS No information. SOURCE Conopholis americana Chloroplast Conopholis americana. ORGANISM Conopholis americana Chloroplast Conopholis americana. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: X59768 X59768 LOCUS CONCP23SRR 2902 bp ds-DNA ORG 19-SEP-1991 DEFINITION C.americana 23S rRNA gene ACCESSION X59768 KEYWORDS 23S ribosomal RNA; LSU ribosomal RNA; large ribosomal subunit. SOURCE Chloroplast Conopholis americana DNA. ORGANISM Chloroplast Conopholis americana Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; Asteridae; Scrophulariales; Orobanchaceae. REFERENCE 1 (bases 1 to 2902) AUTHORS Wimpee,C.F., Morgan,R.W. and Wrobel,R.L. TITLE An aberrant plastid ribosomal RNA gene cluster in a parasitic plant JOURNAL Unpublished (1991) STANDARD full automatic COMMENT *source: stage=fruit; *source: clone_library=pGEM3; *source: clone= B2-2; See X58863 for overlapping sequence (14 nucleotide overlap) From EMBL entry CA23SRR; dated 23-AUG-1991. FEATURES Location/Qualifiers rRNA 1..2810 /product="23S ribosomal RNA" BASE COUNT 803 a 662 c 871 g 566 t ORIGIN LOCUS CONRRN455 429 bp ds-DNA ORG 14-JUL-1992 DEFINITION C.americana plastid 4.5S rRNA and 5S rRNA genes and spacer region ACCESSION X58863 KEYWORDS 4.5S ribosomal RNA; 5S ribosomal RNA; ribosomal DNA intergenic spacer. SOURCE Conopholis americana DNA. ORGANISM Chloroplast Conopholis americana Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; Asteridae; Scrophulariales; Orobanchaceae. REFERENCE 1 (bases 1 to 429) AUTHORS Wimpee,C.F., Morgan,R. and Wrobel,R.L. TITLE An aberrant plastid ribosomal RNA gene cluster in the root parasite Conopholis americana JOURNAL Plant Mol. Biol. 18, 275-285 (1992) STANDARD simple staff_entry COMMENT *source: stage=fruit; *source: clone=B2; See X58864 for related sequence From EMBL entry CARRN455; dated 11-FEB-1992. FEATURES Location/Qualifiers rRNA 15..117 /product="4.5S ribosomal RNA" /gene="4.5S rRNA" misc_feature 118..297 /note="4.5S-5S gene spacer region" rRNA 298..417 /product="5S ribosomal RNA" /gene="5S rRNA" BASE COUNT 130 a 86 c 101 g 112 t ORIGIN BASE COUNT 807 a 659 c 879 g 568 t 2326 others ORIGIN 1 |--------- ---------- ----UUCAAA CGAG---GAA AGGCUUACGG UGGAUA|CCU 61 -AGG|CACCC AG|AG|ACGA GGAAG-GG|U GUA(GUAA-- ----UC-)G| ACG-AAAUGC 121 UUCGGG|GAG UU(------- -----G-AA- AAUA------ -----)AGCA UAG-AUCCGU 181 AGAUU|CCCG AA-UGGG(GU AA)CCU|--- ----(----- -uuc---ac) --------ac 241 ug-CUGCU(C A-AUCCA--U G)GGC-AGg- ---Aaa-gag a-caAC|CUG GCGAACU|GA 301 (AACA)UCUU AGU-AGCCAG AGGAAAAUAA AGC(AAAA-- )GCG-AU|UC CCAUAGUAGC 361 -(GGCGA)GC GA-AAUGGGA -UCAGCCUAA Accg------ ---------- (cgaaaa-)- 421 ---------- -----cgggg uugu-gggag agcaa----- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- --------ua aaagcg---- 781 --ucgugcug cu-aggcGAA gcag-c(u-u aaau)g-aug -cac|c(cua )gaUGG(-CG 841 AAAGU)-CCA GUAgucaaaa gcaucacuac guugc----- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- --------gc ucugaccc-- -GAGUAGCAU GGGA(CACGU 1141 GUAA)UCCCG UGUGAAUCAG CAAG(GACCA C)CUUGCAAG GCUAA-AUAC UCCUGGGUAA 1201 CCAAUAGUAA AGUAGUACC( GUGA)GGGAA GGGUGAAAA- GAACCCC(au -u--)GGGGA 1261 GUGAAAUAGA ACAUGAAACC GU---AAGCU ACCAAGCAGU GGGAGGAG-C ---------- 1321 ------(--- cagg--)--- ---------- ----gCU--C -UGACCGCGU GCCU(GUUGA 1381 AG|A)AUGA| GCCGGCGACU CAUAGGCAGC GGC------- -UUGGUU-AA GGG-(----- 1441 aaccc)-aCC -GGAGCCAUA -GC(-GAAA) GCG----AGU AU(UCA-UA) GGACUa---- 1501 ---------- ---------- ---------- -----uuGUC ACUGCUUAUG GACCCGAACC 1561 UGGGUGAUCU AUCCAUGAC| CAGGAUGAAG CUUUGG(UGA A)ACUAAGUG GAGGUCCGAA 1621 CCGACUGAU( GUUGAAGA)A UCAG|CGGAU GAGUUGUGGU UAG-GGGU(G AAAU)GCCAC 1681 UCGA-ACCCA GAGCUAGCUG GUUCUCCCCG -AAAUGCGU- (UGAG)-GCG CAGC|A-GUU 1741 GAcu------ ---------- ---------g |-gac-|-au -CUAG|GGGU AA|-AGC-AC 1801 UGU-UUCAGU GC-GG|GCCG U(gaga-)GC GGUACCA-AA UCGAA-GCAA ACUCUGAAUA 1861 |CUAga-aua ugaccua--- -aaaauaaca ggggua---a ag|-gUCG-G C-CAGUGAGA 1921 CGAUGGGG(G AUAAG)CUUC AU--CGUCGA GAGGG(AAAC AG)CCCAGAU CACCAGCUAA 1981 GGC|CCCU-A AUUG-AUCG- CUCAGUG--A UAAAGGAGGU -AGGGGUGCA GA---GACAG 2041 CCAGGAGGUU UGC(CUAGAA GCA)GCCAC- CCU|--U(GA A)A|UAGUGC (GUAAUA)GC 2101 |UUACUGAU- CGAGCGCUCU UGC|GCCGAA GAUU-AACGG GGCU-----A AGCGA-UC|C 2161 |GCCGAAGCU |GUGG|gaug ua------(a aaauaaaaa- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ------)--- ----uacauc GGUAGGGGAG |CGUU-CCGC CUUAGAG-G- GAAGCCUCU- 2521 GC(ACGA)GC A-GCGGUGG| ACGAAACGGA AGCGAGAAUG UCGGC|UUGA GUAACGCAAA 2581 CAUUGG(UGA GAA-U)CCAA UG|CCCCGAA AACCUA-AGG GUUCCUC-CG CAAGG(UUCG 2641 U)CC|ACGGA GGGUGAGU|C AG|GGCCUAA GAUCAGGCC- --(-GAAA)- --CGG-UAGU 2701 CG-AUGG-GC AACAGG(UGA AUAUU)UCUG U|AC|ua-c- -cccuu-guu ---------- 2761 ---------- ---------- --------gg ucc------- cgagggacgg ag--caggcu 2821 a-gguua-|g -cc-aaa(-- ag--augg-u -u-------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- --------)a u-cggu-|uc aa-------- ---------g 3061 aacguaaggu gu---cccu- g-uuuuu-c- aggguaag-- a-------ag g-ggu-ag(a 3121 g-aa---a-) au-|a--ccu cg-------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- -----agcc- 3301 aauguucc-a gca|cca-|- ---------- ---------- ---------- ---------- 3361 -ggcac(--u ac-g--)gcg cu-------- ---------- ---------- -------gaa 3421 guaacc--ca cgcc-aua-| cucccaggaa aagcucg--a augaccuuu- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ------aauu aaaacacua- -aa-caaaag ggua|C|CUG UACCCGAAA- CC(AACACA) 3601 GG|---UGG- GU-AG-GUA- (-GAGAA)-U AUCUA-GG-G GC||GCGAGA UAACUCUCUC 3661 UAAGGAA-CU CGGCAAAAUA GCCCCAUAAC (UUCG)GGAG AAGGGGU|GC CUC------- 3721 ---------- (-cucg-)-- ---------- ------GGGG U|C(GC-A)G UGAUCAGGCC 3781 CGGG|CGACU GU(UUACCAA AA)ACACAGG UCUCCG|CAA AGUC(GUAA) GACCAUAUAU 3841 GGG-GCUGAC GCC-UGCCCA GU|GCCGGAA GAUCAAGGAA GUUGGUgacc ug------(A 3901 -UGA)---ca ---------- ---------- ---------- ---------g ggg-aGCCGG 3961 CGACCGAAGC C|CCGGUGAA C|GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC 4021 GAAAUUCCUU |GUCGGG(UA AGU)UCCGAC |CCGCACGAA AGGCGUAACG A-UCUGGGCA 4081 CUGUCUCGGA GAGAGGCUCG |GUGAAAUA| GACAUGU-CU G(UG-AAGAU G)CGGACUAC 4141 CUGCACCUGG ACAG-AAAGA CCCUACGA|A GCUUACUGGU |UCCCUGGGA UU|GGGU-UU 4201 GGGCCUUUCC UGUGCAG-CU UAGGUGGAAG GCGGA-GAAg gcu----(ag ug)----ugc 4261 c-GAGCCAUC -AGUGAGAUA -CCACU|CU- GGAAGAGCU- AUAAUUCUAA -CCU-UG--U 4321 GUUA(----- ggacc-aa-) -cggGcgcGG GACAGUCUCA GGUAGACAGU UUCUAUG(GG 4381 G)CGUAG|G- C-UCC(CAAA AGGUAAC)GG AGGC|G|U|G CAAAGGUUUC C|UCGGGCCG 4441 G--(GCGGGG A--)--UUGG CCCUC---GA |GU(G|CAAA G)GC-AGAA- --GGGAG--C 4501 UUGACUGCAA GAC(UCACCC )GUCGAGCAG GGAC(GAAA) CUCGGC|CUU AGUGAUCCGA 4561 CGGUA-CCA( AGUGGA)AGG |GCCGUCGCU CAAC|GGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUGA UCUUCCCCAA GA(GCUCACA )UCGACGGGA AGGUUUGGCA CCUCGAUGUC 4681 |GGCU|C|UU CGC|CACC|U GGGGCU(GUA GUA)UGUU-C C-AAGGGU|U GGGC(UGUUC 4741 )GCCCAUU-A AAGCGGUACG UGAGCUGGGU UCAGAAC|GU C(GUGA)GAC AGUUUGGUCC 4801 AUAUCC|GGU GUGGG|CGUU AGAGCAUU|G A|GAGGA-CC UUUCCC(UAG UAC(GAGA)G 4861 GA-CC)GGGA AGG|-ACGCA CCUCUGGUGU ACCAGU|UAU CGU(GC-CC) ACGGUAAACG 4921 CUGGGUAGCC AAGUGUGGG- GCGG-AUAAC UGCU(GAAAG CAUCUA)AGU AGUAAGCCCA 4981 CCCC|AAGAU GAGUGCUCU| CC|U-----( -//---)--- -----G-AAG G|UC|ACGGC 5041 (GAGACGA)G CCGU-UUa-- ---------- --------uc auuacGAUAG |GUGUC|AAG 5101 UAGAAGUGCA (GUGA)UGUA U|GCAGCUG| A|GGCAUCCU AACAGACCGG --UAG|ACUU 5161 GAAC-----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS chl.E.virg 5239 bp RNA RNA 11-JAN-191 DEFINITION Epifagus virginiana (Plastid). ACCESSION No information KEYWORDS No information. SOURCE Epifagus virginiana (Plastid). ORGANISM Epifagus virginiana (Plastid). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: X62099 9ID CHEVIARRN standard; DNA; ORG; 7395 BP. XX AC X62099; XX DT 16-JUN-1992 (Rel. 32, Created) DT 16-JUN-1992 (Rel. 32, Last updated, Version 2) XX DE E.virginiana plastid ribosomal RNA operon, trnI and trnA DE pseudogenes XX KW 16S ribosomal RNA; 23S ribosomal RNA; 4.5S ribosomal RNA; KW 5S ribosomal RNA; group II intron; Pseudogene; ribosomal RNA; KW transfer RNA-Ala; transfer RNA-Ile. XX OS Epifagus virginiana OC Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; OC Asteridae. XX OG Plastid XX RN [1] RP 1-7395 RA Wolfe K.H.; RT ; RL Submitted (05-SEP-1991) on tape to the EMBL Data Library by: RL K.H. Wolfe, Indiana University, Dept of Biology, Bloomington IN RL 47405, USA XX RN [2] RP 1-610, 1976-4164 RA Wolfe K.H., Katz-Downie D.S., Morden C.W., Palmer J.D.; RT "Evolution of the plastid ribosomal RNA Operon in a nongreen RT parasitic plant: Accelerated sequence evolution, promoter RT structure, and tRNA Pseudogenes"; RL Plant Mol. Biol. 18:1037-1048(1992). XX CC *source: clone=pEV300, pEV1300, pEV1310, pEV1320; CC *source: chromosome=plastid genome; XX CC See also X61368 for overlapping sequence XX FH Key Location/Qualifiers FH FT rRNA 570..2061 FT /gene="rrn16S" FT tRNA 2324..2370 FT /pseudo /note="exon 1" /gene="trnI(GAU)" FT intron 2371..3258 FT /note="pseudo group II intron" FT tRNA 3259..3292 FT /pseudo /note="exon 2" /gene="trnI(GAU)" FT tRNA 3346..3388 FT /pseudo /gene="trnA(UGC)" /note="exon 1" FT intron 3389..3862 FT /note="pseudo group II intron" FT tRNA 3863..3884 FT /pseudo /gene="trnA(UGC)" /note="exon 2" FT rRNA 4071..6874 FT /gene="rrn23S" FT rRNA 6972..7074 FT /gene="rrn4.5S" FT rRNA 7263..7383 FT /gene="rrn5S" XX SQ Sequence 7395 BP; 2000 A; 1594 C; 2064 G; 1737 T; 0 other; BASE COUNT 786 a 664 c 897 g 561 t 2331 others ORIGIN 1 |--------- ---------- ----UUCAAA CGAG---AAA AGGCUUACGG UGGAUA|CCU 61 -AGG|CACCC AG|AG|ACGA GGAAG-GA|U GUA(GUAA-- ----UC-)G| ACG-AAAUGC 121 UUCGGG|GAG UU(------- -----G-AA- AAUA------ -----)AGCA UAG-AUCCGG 181 AGAUU|CCCG AA-UAGG(GC AA)CCU|--- ----(----- --uu--uga) --------ac 241 ug-cugcu(G A-AUCCA--U G)ggc-aga- ---caa-gag a-uaAC|CUG GCGAACU|GA 301 (AACA)UCUU AGU-AGCCAG AGGAAAAGAA AGC(AAAA-- )GCG-AU|UC CCAUAGUAGC 361 -(GGCGA)GC GA-AAUGGGA -GCAGCCUAA Accg------ ---------- (cgaaaa-)- 421 ---------- -----cgggg uugu-gggag agcaau---- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------a aaagug---- 781 --ucgugcug cu-aggcGAA cgagcu(u-- gaau)g-cug -cac|c(cua )gaUGG(-CG 841 AAAGU)-CCA GUAgccgaaa gcaucauuag cuug------ ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- -------ugc ucugaccc-- -GAGUAGCAU GGGA(CACGU 1141 GGAA)UCCCG UGUGAAUCAG CAAG(GACCA C)CUUGCAAG GCUAA-AUAC UCCUGGGUAA 1201 CCGAUAGUUA AGUAGUACC( GUGA)GGGAA GGGUGAAAA- GAACCCC(ca -uu-)GGGGA 1261 GUGAAAUAGA ACAUGAAACC GU---AAGCU CCCAAGCAGU GGGAGGAG-C ---------- 1321 ------(--- cagg--)--- ---------- ----gCU--C -UGACCGCGU GCCU(GUUGA 1381 AG|A)AUGA| GCCGGCGACU CAUAGGCAGC GGC------- -UUGGUU-AA GGG-(----- 1441 aaccc)-aCC -GGAGCCAUA -GC(-GAAA) GCG----AGU AU(UCA-UA) GGGCAa---- 1501 ---------- ---------- ---------- -----uuGUC ACUGCUUAUG GACCCGAACC 1561 UGGGUGAUCU AUCCAUGAC| CAGGAUGAAG CUUGGG(UGA A)ACUAAGUG GAGGUCCGAA 1621 CCGACUGAU( GUUGAAGA)A UCAG|CGGAU GAGUUGUGGU UAG-GGGU(G AAAU)GCCAC 1681 UCGA-ACCCA GAGCUAGCUG GUUCUCCCCG -AAAUGCGU- (UGAG)-GCG CAGC|A-GUU 1741 GACu------ ---------- ---------g |-gac-|-AU -CUAG|GGGU AA|-AGC-AC 1801 UGU-UUCAGU GC-GG|GCCG U(gaga-)GC GGUACCA-AA UCGAA-GCAA ACUCUGAAUA 1861 |CUAGAaUau gaccuac--- -a-aauaaua ggggua---a ag|-GUCG-G C-cAGUGAGA 1921 CGAUGGGG(G AUAAG)CUUC AU--CGUCGA GAGGG(AAAC AG)CCCGGAU CACCAGCUAA 1981 GGC|CCCU-A AUUG-AUCG- CUCAGUG--A UAAAGGAGGU uAGGGGUGCA GA---GACAG 2041 CCAGGAGGUU UGC(CUAGAA GCA)GCCAC- CCU|--U(GA A)A|GAGUGC (GUAAUA)GC 2101 |UUACUGAU- CGAGCGCUCU UGC|GCCGAA UAUG-AACGG GGCU-----A AGCGA-UU|C 2161 |GCCGAAGCU |GUGG|gaug ua------(a aaa------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ------)--- ----gacauc GGUAGGGGAG |CGUU-CCGC CUUAGAG-G- GAAGCCUCU- 2521 GC(ACGA)GC A-GCGGUGG| ACGAAGCGGA AGCGAGAAUG UCGGC|UUGA GUAACGCAAA 2581 CAUUGG(UGA GAA-U)CCAA UG|CCCCGAA AACCUA-AGG GUUCCUC-CG CAAGG(UUCG 2641 U)CC|ACGGA GGGUGAGU|C AG|GGCCUAA GAUCAGGCC- --(-GAAA)- --GGCGUAGU 2701 CA-AUGG-AC AACAGG(UGA AUAUU)CCUG U|AC|ua-c- -cccuc-gcu ---------- 2761 ---------- ---------- --------gg ucc------- cgagggacgg ag--caggcu 2821 a-gguua-|g -cc-gag(aa ag--augg-u -u-------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- --------)a u-cggu-|uc aa-------- ---------g 3061 aacguaaagu gc---cccu- guuuuuu-c- aggguaaguu a-------ag g-ggu-ag(a 3121 g-aa---a-) au-|g--ccu cg-------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- -----agcc- 3301 aauguuug-a gca|cca-|- ---------- ---------- ---------- ---------- 3361 -ggcgc(--u ac-g--)gcg cu-------- ---------- ---------- -------gaa 3421 guaacc--ca cgcc-aua-| cucccgggaa aagcucg--a acggccuuu- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------a -aa-caaaag ggca|C|CUG UACCUGAAA- CC(GACACA) 3601 GG|---UGG- GU-AG-GUA- (-GAGAA)-U ACCUA-GG-G GC||GCGAGA CAACUCUCUC 3661 UAAGGAA-CU CGGCAAAAUA GCCCCAUAAC (UUCG)GGAG AAGGGGU|GC CUCC------ 3721 ---------- (-ucgg-)-- ---------- -----GGGGG U|C(GC-A)G UGAUCAGGCC 3781 CGGG|CGACU GU(UUACCAA AA)ACACAGG UCUCCG|CAA AGUC(GUAA) GACCAUAUAU 3841 GGGGGCUGAC GCC-UGCCCA GU|GCCGGAA GGUCAAGGAA GUUGGUgacc ug------(A 3901 -UUA)---ca ---------- ---------- ---------- ---------g ggg-aGCCGG 3961 CGACCUAAGC C|CCGGUGAA C|GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC 4021 GAAAUUCCUU |GUCGGG(UA AGU)UCCGAC |CCGCACGAA AGGCGUAACG A-UCUGGGCA 4081 CUGUCUCGGA GAGAGGCUCG |GUGAAAUA| GACAUGU-CU G(UG-AAGAU G)CGGACUAC 4141 CUGCACCUGG ACAG-AAAGA CCCUAUGA|A GCUUUACUGU |UCCCUGGGA UU|GAGU-UU 4201 GGGCUUUUCC UGCGCAG-CU UAGGUGGAAG GCGAA-GAAg gc-----(ag ug)----ggc 4261 cCGAGCCAUC -AGUGAGAUA -CCACU|CU- GGAAGAGCU- AGAAUUCUAA -CCU-UG--U 4321 GUCA(----- ggacc-uac) -gggccgcgg gACAGUCUCA GGUAGACAGU UUCUAUG(GG 4381 G)CGUAG|GC C-UCC(CAAA AGGUAAC)GG AGGC|G|U|G CAAAGGUUUC C|UCGGGCCG 4441 G--(GCGGAG A--)--UUGG CCCUC---GA |GU(G|CAAA G)GC-AUAA- --GGGAG--C 4501 UUGACUGCAA GAC(CCACCC )GUCGAGCAG GGAC(GAAA) GUCGGC|CUU AGUGAUCCGA 4561 CGGUA-CCG( AGUGGA)AGG |GCCGUCGCU CAAC|GGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUGA UCUUCCCCAA GA(GCUCACA )UCGACGGGA AGGUUUGGCA CCUCGAUGUC 4681 |G-CU|C|UU CGC|CACC|U GGGGCU(GUA GUA)UGUU-C C-AAGGGU|U GGGC(UGUUC 4741 )GCCCAUU-A AAGCGGUACG UGAGCUGGGU UCAGAAC|GU C(GUGA)GAC AGUUUGGUCC 4801 AUAUCC|GGU GUGGG|CGUU AGAGCAUU|G A|GAGGA-CC UUUCCC(UAG UAC(GAGA)G 4861 GA-CC)GGGA AGG|-ACGCA CCUCUGGUGU ACCAGU|UGU CGU(GC-CC) ACGGUAAACG 4921 CUGGGUAGCC AAGUGCGGG- GCGG-AUAAC UGCU(GAAAG CAUCUA)AGU AGUAAGCCCA 4981 CCCC|AAGAU GAGUGCUCU| CC|U-----( -//---)--- ----AU-AAG G|UC|ACGGC 5041 (GAGACGA)G CCGU-uua-- ---------- --------uc auuacGAUAG |GUGUC|AAG 5101 UGGAAGUGCA (GUGA)UGUA U|GCAGCUG| A|GGCAUCCU AACAGACCGG --UAG|ACUU 5161 GAAC-----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS chl.N.ta.1 5239 bp RNA RNA 11-JAN-191 DEFINITION chloroplast tobacco. ACCESSION No information KEYWORDS No information. SOURCE chloroplast tobacco. ORGANISM chloroplast tobacco. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: Z00044 LOCUS TOBCPCG 155844 bp ds-DNA circular ORG 15-SEP-1990 DEFINITION N.tabacum (var. Bright Yellow 4) chloroplast, complete genome ACCESSION Z00044 SOURCE Nicotiana tabacum (var. Bright Yellow 4) chloroplast DNA, clone pHC79 (IR-A and IR-B). ORGANISM Chloroplast Nicotiana tabacum Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; Asteridae; Solanales; Solanace AUTHORS Shinozaki,K., Ohme,M., Tanaka,M., Wakasugi,T., Hayashida,N., Matsubayashi,T., Zaita,N., Chunwongse,J., Obokata,J., Yamaguchi-Shinozaki,K., Ohto,C., Torazawa,K., Meng,B.Y., Sugita,M., Deno,H., Kamogashira,T., Yamada,K., Kusuda,J., Takaiwa,F., Kato,A., Tohdoh,N., Shimada,H. and Sugiura,M. TITLE The complete nucleotide sequence of tobacco chloroplast genome: Its gene organization and expression JOURNAL EMBO J. 5, 2043-2049 (1986 BASE COUNT 772 a 681 c 917 g 543 t 2326 others ORIGIN 1 |--------- ---------- ----UUCAAA CGAG---GAA AGGCUUACGG UGGAUA|CCU 61 -AGG|CACCC AG|AG|ACGA GGAAG-GG|C GUA(GUAA-- ----UC-)G| ACG-AAAUGC 121 UUCGGG|GAG UU(------- -----G-AA- AAUA------ -----)AGCA UAG-AUCCGG 181 AGAUU|CCCG AA-UAGG(GC AA)CCU|--- ----(----- --uu--cga) --------AC 241 UG-CUGCU(G A-AUCCA--U G)GGC-AGG- ---CAA-Gag a-caAC|CUG GCGAACU|GA 301 (AACA)UCUU AGU-AGCCAG AGGAAAAGAA AGC(AAAA-- )GCG-AU|UC CCGUAGUAGC 361 -(GGCGA)GC GA-AAUGGGA -GCAGCCUAA Accgu----- ---------- (gaaa---)- 421 ---------- ----acgggg uugu-gggag agcaau---- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------a caagcg---- 781 --ucgugcug cu-aggcGAA Gcagcc(c-- gaau)g-cug -cac|c(cua )gaUGG(-CG 841 AAAGU)-CCA GUAgccgaaa gcaucacuag cuua------ ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- -------ugc ucugaccc-- -GAGUAGCAU GGGG(CACGU 1141 GGAA)UCCCG UGUGAAUCAG CAAG(GACCA C)CUUGCAAG GCUAA-AUAC UCCUGGGUGA 1201 CCGAUAGCGA AGUAGUACC( GUGA)GGGAA GGGUGAAAA- GAACCCC(ca -uc-)GGGGA 1261 GUGAAAUAGA ACAUGAAACC GU---AAGCU CCCAAGCAGU GGGAGGAG-C ---------- 1321 ------(--- cagg--)--- ---------- ----GCU--C -UGACCGCGU GCCU(GUUGA 1381 AG|A)AUGA| GCCGGCGACU CAUAGGCAGU GGC------- -UUGGUU-AA GGG-(----- 1441 aaccc)-aCC -GGAGCCGUA -GC(-GAAA) GCG----AGU CU(UCA-UA) GGGCAa---- 1501 ---------- ---------- ---------- -----uuGUC ACUGCUUAUG GACCCGAACC 1561 UGGGUGAUCU AUCCAUGAC| CAGGAUGAAG CUUGGG(UGA A)ACUAAGUG GAGGUCCGAA 1621 CCGACUGAU( GUUGAAGA)A UCAG|CGGAU GAGUUGUGGU UAG-GGGU(G AAAU)GCCAC 1681 UCGA-ACCCA GAGCUAGCUG GUUCUCCCCG -AAAUGCGU- (UGAG)-GCG CAGC|A-GUU 1741 GACu------ ---------- ---------g |-gac-|-AU -CUAG|GGGU AA|-AGC-AC 1801 UGU-UUCGGU GC-GG|GCCG C(gaga-)GC GGUACCA-AA UCGAG-GCAA ACUCUGAAUA 1861 |CUAGA-Uau gaccuca--- -a-aauaaca gggguc---a ag|-GUCG-G C-UAGUGAGA 1921 CGAUGGGG(G AUAAG)CUUC AU--CGUCGA GAGGG(AAAC AG)CCCGGAU CACCAGCUAA 1981 GGC|CCCU-A AAUG-AUCG- CUCAGUG--A UAAAGGAGGU -AGGGGUGCA GA---GACAG 2041 CCAGGAGGUU UGC(CUAGAA GCA)GCCAC- CCU|--U(GA A)A|GAGUGC (GUAAUA)GC 2101 |UCACUGAU- CGAGCGCUCU UGC|GCCGAA GAUG-AACGG GGCU-----A AGCGA-UC|U 2161 |GCCGAAGCU |GUGG|gaug ua------(a aaa------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ------)--- ----uacauc GGUAGGGGAG |CGUU-CCGC CUUAGAG-A- GAAGCCUCC- 2521 GC(GCGA)GC G-GUGGUGG| ACGAAGCGGA AGCGAGAAUG UCGGC|UUGA GUAACGCAAA 2581 CAUUGG(UGA GAA-U)CCAA UG|CCCCGAA AACCUA-AGG GUUCCUC-CG CAAGG(UUCG 2641 U)CC|ACGGA GGGUGAGU|C AG|GGCCUAA GAUCAGGCC- --(-GAAA)- --GGCGUAGU 2701 CG-AUGG-AC AACAGG(UGA AUAUU)CCUG U|AC|ug-c- -cccuu-guu ---------- 2761 ---------- ---------- --------gg ucc------- cgagggacgg ag--gaggcu 2821 a-gguua-|g -cc-gaa(-- ag--augg-u -u-------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- --------)a u-cggu-|uc aa-------- ---------g 3061 aacguaaggu gu---cccu- gcuuugu-c- aggguaag-- a-------ag g-ggu-ag(a 3121 g-aa---a-) au-|g--ccu cg-------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- -----agcc- 3301 aauguucg-a aua|cca-|- ---------- ---------- ---------- ---------- 3361 -ggcgc(--u ac-g--)gcg cu-------- ---------- ---------- -------gaa 3421 guaacc--ca ugcc-aua-| cucccaggaa aagcucg--a acgacuuug- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- -ag-caagag ggua|C|CUG UACCCGAAA- CC(GACACA) 3601 GG|---UGG- GU-AG-GUA- (-GAGAA)-U ACCUA-GG-G GC||GCGAGA CAACUCUCUC 3661 UAAGGAA-CU CGGCAAAAUA GCCCCGUAAC (UUCG)GGAG AAGGGGU|GC CUCC------ 3721 --------u- (-cacaa)-a ---------- -----GGGGG U|C(GC-A)G UGACCAGGCC 3781 CGGG|CGACU GU(UUACCAA AA)ACACAGG UCUCCG|CAA AGUC(GUAA) GACCAUGUAU 3841 GGGGGCUGAC GCC-UGCCCA GU|GCCGGAA GGUCAAGGAA GUUGGUgacc ug------(A 3901 -UGA)---ca ---------- ---------- ---------- ---------g ggg-aGCCGG 3961 CGACCGAAGC C|CCGGUGAA C|GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC 4021 GAAAUUCCUU |GUCGGG(UA AGU)UCCGAC |CCGCACGAA AGGCGUAACG A-UCUGGGCA 4081 CUGUCUCGGA GAGAGGCUCG |GUGAAAUA| GACAUGU-CU G(UG-AAGAU G)CGGACUAC 4141 CUGCACCUGG ACAG-AAAGA CCCUAUGA|A GCUUCACUGU |UCCCUGGGA UU|GGCU-UU 4201 GGGCCUUUCC UGCGCAG-CU UAGGUGGAAG GCGAA-GAAG GCCUCCU(UC CG)GGGGGGC 4261 CCGAGCCAUC -AGUGAGAUA -CCACU|CU- GGAAGGGCU- AGAAUUCUAA -CCU-UG--U 4321 GUCA(----- ggacc-uac) -GGGCCAAGG GACAGUCUCA GGUAGACAGU UUCUAUG(GG 4381 G)CGUAG|GC C-UCC(CAAA AGGUAAC)GG AGGC|G|U|G CAAAGGUUUC C|UCGGGCCG 4441 G--(ACGGAG A--)--UUGG CCCUC---GA |GU(G|CAAA G)GC-AGAA- --GGGAG--C 4501 UUGACUGCAA GAC(CCACCC )GUCGAGCAG GGAC(GAAA) GUCGGC|CUU AGUGAUCCGA 4561 CGGUG-CCG( AGUGGA)AGG |GCCGUCGCU CAAC|GGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUGA UCUUCCCCAA GA(GCUCACA )UCGACGGGA AGGUUUGGCA CCUCGAUGUC 4681 |GGCU|C|UU CGC|CACC|U GGGGCU(GUA GUA)UGUU-C C-AAGGGU|U GGGC(UGUUC 4741 )GCCCAUU-A AAGCGGUACG UGAGCUGGGU UCAGAAC|GU C(GUGA)GAC AGUUCGGUCC 4801 AUAUCC|GGU GUGGG|CGUU AGAGCAUU|G A|GAGGA-CC UUUCCC(UAG UAC(GAGA)G 4861 GA-CC)GGGA AGG|-ACGCA CCUCUGGUGU ACCAGU|UAU CGU(GC-CC) ACGGUAaacG 4921 CUGGGUAGCC AAGUGCGGA- GCGG-AUAAC UGCU(GAAAG CAUCUA)AGU AGUAAGCCCA 4981 CCCC|AAGAU GAGUGCUCU| CC|------( ------)--- -----UGAAG G|UC|ACGGC 5041 (GAGACGA)G CCGU-uua-- ---------- --------uc auuacGAUAG |GUGUC|AAG 5101 UGGAAGUGCA (GUGA)UGUA U|GCAGCUG| A|GGCAUCCU AACAGACCGG --UAG|ACUU 5161 GAAC-----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS chl.N.ta.2 5239 bp RNA RNA 30-SEP-1988 DEFINITION Chloroplast Nicotiana tabacum.; 23S ribosomal RNA; 4.5S ribosomal RNA; ribosomal RNA. ACCESSION J01446 KEYWORDS 23S ribosomal RNA; 4.5S ribosomal RNA; ribosomal RNA. SOURCE Chloroplast Nicotiana tabacum. ORGANISM Chloroplast Nicotiana tabacum. REFERENCE 1 (bases 1 to 3166) AUTHORS Takaiwa,F. and Sugiura,M. TITLE tobacco chloroplasts The complete nucleotide sequence of a 23-S rRNA gene from JOURNAL Eur. J. Biochem. 124, 13-19 (1982) STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: J01446 BASE COUNT 743 a 660 c 881 g 520 t 2435 others ORIGIN 1 |--------- ---------- ----UUCAAA CGAG---GAA AGGCUUACGG UGGAUA|CCU 61 -AGG|CACCC AG|AG|ACGA GGAAG-GG|C GUA(GUAA-- ----UC-)G| ACG-AAAUGC 121 UUCGGG|GAG UU(------- -----G-AA- AAUA------ -----)AGCA UAG-AUCCGG 181 AGAUU|CCCG AA-UAGG(GC AA)CCU|--- ----(----- --uu--cga) --------AC 241 UG-CUGCU(G A-AUCCA--U G)GGC-AGG- ---CAA-Gag a-caAC|CUG GCGAACU|GA 301 (AACA)UCUU AGUgAGCCAG AGGAAAAGAA AGC(AAAA-- )GCG-AU|UC CCGUAGUAGC 361 -(GGCGA)GC GA-AAUGGGA -GCAGCCUAA Accgu----- ---------- (gaaa---)- 421 ---------- ----acg-gg uugu-gggag agcaau---- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------a caagcg---- 781 --ucgugcug cu-aggcGAA Gacgcc(c-- gaau)g-cug -cac|c(cua )gaUGG(-CG 841 AAAGU)-CCA GUAgccgaaa gcaucacuag cuua------ ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- -------ugc ucugaccc-- -GAGUAGCAU GGGG(CACGU 1141 GGAA)UCCCG UGUGAAUCGA CAAG(GACCA C)CUUGCAAG GCUAA-AUAC UCCUGGGUGA 1201 CCGAUAGCGA AGUAGUACC( GUGA)GGGAA GGGUGAAAA- GAACCCC(-a -uc-)GGGGA 1261 GUGAAAUAGA ACAUGAAACC GU---AAGCU CCCAAGCAGU GGGAGG---C ---------- 1321 ------(--- cagg--)--- ---------- ----GCU--C -UGACCGCGU GCCU(GUUGA 1381 AG|A)AUGA| GCCGGCGACU CAUAGGCAGU GGC------- -UUGGUU-AA GGG-(----- 1441 aaccc)-aCC -GGAGCCGUA -GC(-GAAA) GCG----AGU CU(UCA-UA) GGGCAa---- 1501 ---------- ---------- ---------- -----uuGUC ACUGCUUAUG GACCCGAACC 1561 UGGGUGAUCU AUCCAUGAC| CAGGAUGAAG CUUGGG(UGA A)ACUAAGUG GAGGUCCGAA 1621 CCGACUGAU( GUUGAAGA)A UCAG|CGGAU GAGUUGUGGU UAG-GGGU(G AAAU)GCCAC 1681 UCGA-ACCCA GAGCUAGCUG GUUCUCCCCG -AAAUGCGU- (UGAG)-GCG CAGC|A-GUU 1741 GACu------ ---------- ---------g |-gac-|-AU -CUAG|GGGU AA|-AGC-AC 1801 UGU-UUCGGU GC-GG|GCCG C(gaga-)GC GGUACCA-AA UCGAG-GCAA ACUCUGAAUA 1861 |CUAGA-Uau gaccuca--- -a-aauaaca gggguc---a ag|-GUCG-G C-UAGUGAGA 1921 CGAUGGGG(G AUAAG)CUUC AU--CGUCGA GAGGG(AAAC AG)CCCGGAU CACCAGCUAA 1981 GGC|CCCU-A AAUG-AUCG- CUCAGUG--A UAAAGGAGGU -AGGGGUGCA GA---GACAG 2041 CCAGGAGGUU UGC(CUAGAA GCA)GCCAC- CCU|--U(GA A)A|GAGUGC (GUAAUA)GC 2101 |UCACUGAU- CGAGCGCUCU UGC|GCCGAA GAUG-AACGG GGCU-----A AGCGA-UC|U 2161 |GCCGAAGCU |GUGG|gaug ua------(a aaa------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ------)--- ----uacauc GGUAGGGGAG |CGUU-CCGC CUUAGAG-A- GAAGCCUCC- 2521 GC(GCGA)GC G-GUGGUGG| ACGAAGCGGA AGCGAGAAUG UCGGC|UUGA GUAACGCAAA 2581 CAUUGG(UGA GAA-U)CCAA UG|CCCCGAA AACCUA-AGG GUUCCUC-CG CAAGG(UUCG 2641 U)CC|ACGGA GGGUGAGU|C AG|GGCCUAA GAUCAGGCC- --(-GAAA)- --GGC-UAGU 2701 CG-AUGG-AC AACAGG(UGA AUAUU)CCUG U|AC|ug-c- -cccuu-guu ---------- 2761 ---------- ---------- --------gg ucc------- cgagggacgg ag--gaggcu 2821 a-gguua-|g -cc-gaa(-- ag--augg-u -u-------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- --------)a u-cggu-|uc aa-------- ---------g 3061 aacguaaggu gu---cccu- gcuuugu-c- aggguaag-- a-------ag g-ggu-ag(a 3121 g-aa---a-) au-|g--ccu cg-------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- -----agcc- 3301 aauguucg-a aua|cca-|- ---------- ---------- ---------- ---------- 3361 -ggcgc(--u ac-g--)gc- cg-------- ---------- ---------- -------gaa 3421 guaacc--ca ugcc-aua-| cucccaggaa aagcucg--a acgacuuug- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- -ag-caagag ggua|C|CUG UACCCGAAA- CC(GACACA) 3601 GG|---UGG- GU-AG-GUA- (-GAGAA)-U ACCUA-GG-G GC||GCGAGA CAACUCUCUC 3661 UAAGGAA-CU CGGCAAAAUA GCCCCGUAAC (UUCG)GGAG AAGGGGU|GC CUCC------ 3721 --------u- (-cacaa)-a ---------- -----GGGGG U|C(GC-A)G UGACCAGGCC 3781 CGGG|CGACU GU(UUACCAA AA)ACACAGG UCUCCG|CAA AGUC(GUAA) GACCAUGUAU 3841 GGG-GCUGAC GCC-UGCCCA GU|GCCGGAA GGUCAAGGAA GUUGGUgacc ug------(A 3901 -UGA)---ca ---------- ---------- ---------- ---------g ggg-aGCCGG 3961 CGACCGAAGC C|CCGGUGAA C|GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC 4021 GAAAUUCCUU |GUCGGG(UA AGU)UCCGAC |CCGCACGAA AGGCGUAACG A-UCUGGGCA 4081 CUGUCUCGGA GAGAGGCUCG |GUGAAAUA| GACAUGU-CU G(UG-AAGAU G)CGGACUAC 4141 CUGCACCUAG ACAG-AAAGA CCCUAUGA|A GCUUCACUGU |UCCCUGGGA UU|GGCU-UU 4201 GGGCCUUUCC UGCGCAG-CU UAGGUGGAAG GCGAA-GAAG GCCUCCU(UC CG)GGGGGGC 4261 CCGAGCCAUC -AGUGAGAUA -CCACU|CU- GGAAGGGCU- AGAAUUCUAA -CCU-UG--U 4321 GUCA(----- ggacc-uac) -GGGCCAAGG GACAGUCUCA GGUAGACAGU UUCUAUG(GG 4381 G)CGUAG|GC C-UCC(CAAA AGGUAAC)GG AGGC|G|U|G CAAAGGUUUC C|UCGGGCCG 4441 G--(ACGGAG A--)--UUGG CCCUC---GA |GU(G|CAAA G)GC-AGAA- --GGGAG--C 4501 UUGACUGCAA GAC(CCACCC )GUCGAGCAG GGAC(GAAA) GUCGGC|CUU AGUGAUCCGA 4561 CGGUG-CCG( AGUGGA)AGG |GCCGUCGCU CAAC|GGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUGA UCUUCCCCAA GA(GCUCACA )UCGACGGGA AGGUUUGGCA CCUCGAUGUC 4681 |GGCU|C|UU CGC|CACC|U GGGGCU(GUA GUA)UGUU-C C-AAGGGU|U GGGC(UGUUC 4741 )GCCCAUU-A AAGCGGUACG UGAGCUGGGU UCAGAAC|GU C(GUGA)GAC AGUUCGGUCC 4801 AUAUCC|GGU GUGGG|CGUU AGAGCAUU|G A|GAGGA-CC UUUCCC(UAG UAC(GAGA)G 4861 GA-CC)GGGA AGG|-ACGCA CCUCUGGUUG ACCAGU|UAU CGU(GC-CC) ACGGUAaacG 4921 CUGGGUAGCC AAGUGCGGA- GCGG-AUAAC UGCU(GAAAG CAUCUA)AGU AGUAAGCCCA 4981 CCCC|AAGAU GAGUGCUCU| CC|U~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ ~|~~|~~~~~ 5041 (~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~|~~~ 5101 ~~~~~~~~~~ (~~~~)~~~~ ~|~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 5161 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS chl.P.sati 5239 bp RNA RNA 11-JAN-191 DEFINITION Chloroplast Pisum sativum. ACCESSION No information KEYWORDS No information. SOURCE Chloroplast Pisum sativum. ORGANISM Chloroplast Pisum sativum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: X55033 LOCUS PEACPPSRRN 7920 bp ds-DNA ORG 28-JUL-1992 DEFINITION P.sativum chloroplast DNA of the single ribosomal RNA operon ACCESSION X55033 KEYWORDS . SOURCE Chloroplast Pisum sativum DNA. ORGANISM Chloroplast Pisum sativum Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; Rosidae; Fabales; Fabaceae. REFERENCE 1 (bases 1 to 7920) AUTHORS Stummann,B.M., Lehmbeck,J., Bookjans,G. and Henningsen,K.W. TITLE Nucleotide sequence of the single ribosomal RNA operon of pea chloroplast DNA JOURNAL Physiol. Plantarum 72, 139-146 (1988) STANDARD full automatic COMMENT From EMBL entry CHPSRRNAO; dated 01-JUL-1992. FEATURES Location/Qualifiers tRNA join(2699..2734,3418..3453) /gene="trnI-GAU" tRNA join(3519..3555,4356..4391) /gene="trnA-UGC" -35_signal 58..63 -10_signal 86..91 -35_signal 349..354 -10_signal 372..377 tRNA 412..483 /gene="trnV-GAC" -35_signal 549..554 -10_signal 573..578 rRNA 717..2227 /product="16S ribosomal RNA" rRNA 4501..7312 /product="23S ribosomal RNA" rRNA 7391..7495 /product="4.5S ribosomal RNA" rRNA 7726..7846 /product="5S ribosomal RNA" BASE COUNT 2136 a 1745 c 2219 g 1820 t ORIGIN BASE COUNT 801 a 662 c 895 g 559 t 2322 others ORIGIN 1 |--------- ---------- ----UUCAAA CGAG---GAA AGGCUUAUGG UGGAUA|CCU 61 -AGG|CACCC AG|AG|ACGA GGAAG-GG|C GUA(GUAA-- ----GC-)G| ACG-AAAUGC 121 UUCGGG|GAG UU(------- -----G-AA- AAUA------ -----)AGCA UAG-AUCCGA 181 GGAUU|CCCG AA-UAGG(UC AA)CCU|--- ----(----- --uu--cga) --------AC 241 UG-CUGCU(G A-AUUCA--C G)AGC-AGG- ---CAA-gag a-caAC|CUG GCGAACU|GA 301 (AACA)UCUU AGU-AGCCAG AGGAAAAGAA AGC(AAAA-- )GCG-AU|UC CCGUAGUAGC 361 -(GGCGA)GC GA-AAUGGGA -GCAGCCUAA Accgu----- ---------- (gaaa---)- 421 ---------- ----acgggg uugu-gggag agcaau---- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------a caagcg---- 781 --ucgugcug cu-aggcGAA gcag-u(c-- gaau)g-uug -cac|c(cua )gaUGG(-UG 841 AAAGU)-CCA GUAgccgaaa gcaucacuag cuua------ ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- -------ugc ucugaccc-- -GAGUAACAU GGGG(CACGU 1141 GAAA)UCCCG UGUGAAUCAG CAAG(GACCA C)CUUGCAAG GCUAA-AUAC UCCUGGGUGA 1201 CCGAUAGUGA AGUAGUACC( GUGA)GGGAA AGGUGAAAA- GAACCCC(ug -gc-)GGGGA 1261 GUGAAAUAGA ACAUGAAACC GU---AAGCU CCCAA-CAGU GGGAGGAG-C ---------- 1321 ------(--- uggg--)--- ---------- ----GCU--C -UGACCGCGU GCCU(GUUGA 1381 AG|A)AUGA| GCCGGCGACU CAUAGGCAGU GGC------- -UUGGUU-AA GGG-(----- 1441 aaacc)-aCC -GGAGCCGUA -GC(-GAAA) GCG----AGU CU(UCA-UA) GGGCUa---- 1501 ---------- ---------- ---------- -----uuGUC ACUGCUUAUG GACCCGAACC 1561 UGGGUGAUCU AUCCAUGAC| CAGGAUGAAG UUUAGG(UGA A)ACUAAGUG GAGGUCCGAA 1621 CCGACUGAU( GUUGAAAA)A UCAG|CGGAU GAGUUGUGGU UAG-CGGU(G AAAU)GCCAA 1681 UCGA-ACCCA GAGCUAGCUG GUUCUCCCCG -AAAUGCGU- (UGAG)-GCG CAGC|A-GUU 1741 GACu------ ---------- ---------g |-gac-|-AU -CUAG|GGGU AA|-AGC-AC 1801 UGU-UUCGGC GC-GG|GCCG C(gaga-)GC GGUACCA-AA UCGAG-GCAA ACUCUGAAUA 1861 |CUAGA-Uau gaccc----- -------cga cggguc---a ag|-GUCG-G C-cAGUGAGA 1921 CGAUGGGG(G AUAAG)CUUC AU-CUGUCGA GAGGG(AAAC AG)CCCAGAU CACCAGCUAA 1981 GGC|CCCU-A AAUG-AUCG- CUCAGUG--A UAAAGGAGGU -AGGAGUGCA GA---GACAG 2041 CCAGGAGGUU UGC(CUAGAA GCA)GCCAC- CCU|--U(CA A)A|GAGUGC (GUAAUA)GC 2101 |UCACUGAU- CGAGCGCUCU UGC|GCCGAA GAUG-AACGG GGCU-----A AGCGA-UU|U 2161 |GCCGAAGCU |GUGG|gaug ua------(a aaa------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ------)--- ----ugaauc GGUAGGGGAG |CGUU-CCGC CUUAGAA-A- GAAGUACCC- 2521 GC(GCGA)GC A-GGGUUGG| ACGAAGCGGA AGCGAGAAUG UCGGC|UUGA GUAACGAAAA 2581 CAUUGG(UGA GAA-U)CCAA UG|CCCCGAA AACCUA-AGG AUUCCUC-CG CAAGG(UUCG 2641 U)CC|ACGGA GGGUAAGU|C AG|GACCUAA GAUCAGGCC- --(-GAAA)- --GGCGUAGU 2701 CG-AUGG-AC AACAGG(UUA AUAUU)CCUG U|AC|ug-c- -cccuu-guu ---------- 2761 ---------- ---------- --------gg ucc------- cgagggacgg ag--gaggcu 2821 a-gguua-|g -cc-gaa(-- ag--augg-u -u-------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- --------)a u-cggu-|uc aa-------- ---------g 3061 aacauaaggu gacu-cccu- guuuuuuuc- aggguaag-u a-------ag g-ggu-ag(a 3121 g-aa---a-) au-|gc-ccu cg-------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- -----agcc- 3301 aaaauucg-a gua|cga-|- ---------- ---------- ---------- -------gua 3361 cgaggc(--g cg-c--)acu cuggcgcu-- ---------- ---------- -------aaa 3421 guaauu--ga ugcc-aua-| cucccaggaa aaguucg--a acgaccuac- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- -aa-caagag ggua|C|CUG UACCGGAAA- CC(GACACA) 3601 GG|---UGG- GU-AG-GUA- (-GAGAA)-U ACCUA-GG-G GC||GCGAGA CAACUCUCUC 3661 UAAGGAA-CU CGGCAAAAUA GCCCCGUAAC (UUCG)GGAG AAGGGGU|GC CUCC------ 3721 --------u- (-cacaa)-a ---------- -----GGGGG U|C(GC-A)G UGACUAGGCC 3781 CGGG|CGACU GU(UUACCAA AA)ACACAGG UCUCCG|CAA AGUC(GUAA) GACCAUGUAU 3841 GGGGGCUGAC GCC-UGCCCA GU|GCCGGAA GGUUAAGGAA GUUGGUgacc ug------(A 3901 -UGA)---ca ---------- ---------- ---------- ---------g gga-aGCAGG 3961 CGACCGAAGC C|CCGGUGAA C|GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC 4021 GAAAUUCCUU |GUCGGG(UA AGU)UCCGAC |CCGCACGAA AGGCGUAACG A-UCUGGGCA 4081 CUGUCUCGGA GAGAGACUCG |GUGAAAUA| GACAUGU-CU G(UG-AAGAU G)CGGACUAC 4141 CUGCACCUGG ACAG-AAAGA CCCUAUGA|A GCUUCACUGU |UCCCUGGGA UU|GGCU-UU 4201 GGGCUUUUCC UGCGCAG-CU UAGGUGGAAG GCAAA-GAAG GCCCCCU(UC CG)GGGGGGC 4261 UCGAGCCAUC -AGUGAGAUA -CCACU|CU- GGAAGAGCU- AGAAUUCUAA -CCU-UG--U 4321 GCCA(----- ---ag-ac-) -aGACCAAGG GACAGUCUCA GGUAGACAGU UUCUAUG(GG 4381 G)CGUAG|G- C-UCC(CAAA AGGUAAC)GG AGGC|G|U|G CAAAGGUUUC C|UCGGGCCA 4441 G--(ACGGAG A--)--UUGG CCCUC---GA |GU(G|CAAA G)GC-AGAA- --GGGAG--C 4501 UUGACUGCAA GAC(CCACCC )GUCGAGCAG GGAC(GAAA) GUCGGC|CUU AGUGAUCCGA 4561 CGGUG-CCG( AGUGGA)AGG |GCCGUCGCU CAAC|GGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUGA UCUUCCCCAA GA(GCUCACA )UCGACGGGA AGGUUUGGCA CCUCGAUGUC 4681 |GGCU|C|UU CGC|CACC|U GGAGCU(GUA GUA)GGUU-C C-AAGGGU|U GGGC(UGUUC 4741 )GCCCAUU-A AAGCGGUACG UGAGCUGGGU UCAGAAC|GU C(GUGA)GAC AGUUCGGUCC 4801 AUAUCC|GGU GUGGG|CGUU AGAGCAUU|G A|GAGGA-CA UUUCCC(UAG UAC(GAGA)G 4861 GA-CC)GGGA AGG|-ACGCA CCUCUGGUGU GCCAGU|UAU CGU(GC-CA) ACGGUAaacG 4921 CUGGGUAGCC AAGUGCGGA- GCGG-AUAAC UGCU(GAAAG CAUCUA)AGU AGUAAGCCCA 4981 CCCU|AAGAU GAGUGCUCU| CC|U-----( -//---)--- -----UGAAG G|UC|ACGGC 5041 (GAGACGA)G CCGUuuuu-- ---------- --------ca uuaacGAUAG |GUGUC|AAG 5101 UGGAAGUACA (GUAA)UGUA U|GCAGCUG| A|GGCAUCCU AACAGACCGA --UAG|ACUU 5161 GAAC-----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS chl.A.inca 5239 bp RNA RNA 11-JAN-191 DEFINITION Chloroplast Alnus incana. ACCESSION No information KEYWORDS No information. SOURCE Chloroplast Alnus incana. ORGANISM Chloroplast Alnus incana. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: M75722 LOCUS ALSCP23SA 2811 bp ds-DNA ORG 26-FEB-1992 DEFINITION Alnus incana chloroplast 23S ribosomal RNA (23S rRNA) gene. ACCESSION M75722 KEYWORDS 23S ribosomal RNA. SOURCE Chloroplast Alnus incana (chromosome Chloroplast Alnus incana) (library: EMBL3) DNA. ORGANISM Chloroplast Alnus incana Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; Hamamelidae; Fagales; Betulaceae. REFERENCE 1 (bases 1 to 2811) AUTHORS Levesque,M. and Johnson,D.A. TITLE Sequence of the chloroplast 23S rRNA gene from the alder Alnus incana JOURNAL Unpublished (1991) STANDARD full staff_entry BASE COUNT 749 a 665 c 881 g 516 t ORIGIN LOCUS ALSCPGA 2811 bp ds-DNA ORG 14-DEC-1991 DEFINITION Alnus incana chloroplast 23s rRNA gene. ACCESSION M76448 KEYWORDS ribosomal RNA. SOURCE Chloroplast Alnus incana (chromosome Chloroplast Alnus incana) DNA. ORGANISM Chloroplast Alnus incana Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; Hamamelidae; Fagales; Betulaceae. REFERENCE 1 (bases 1 to 2811) AUTHORS Levesque,M. and Johnson,D.A. TITLE Sequence of the chloroplast 23s rRNA gene from the alder alnus incana JOURNAL Unpublished (1991) STANDARD simple staff_entry BASE COUNT 749 a 665 c 881 g 516 t ORIGIN LOCUS ALSCPRRNA 1981 bp ds-DNA ORG 25-FEB-1992 DEFINITION Alnus incana chloroplast 23S rRNA, 4.5S rRNA, 5S rRNA, tRNA-Arg, and tRNA-Asn genes. ACCESSION M75719 KEYWORDS 23S ribosomal RNA; 4.5S ribosomal RNA; 5S ribosomal RNA; tRNA-Arg; tRNA-Asn. SOURCE Chloroplast Alnus incana (chromosome Chloroplast Alnus incana) DNA. ORGANISM Chloroplast Alnus incana Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; Hamamelidae; Fagales; Betulaceae. REFERENCE 1 (bases 1 to 1981) AUTHORS Imbeault,J.-C. and Johnson,D.A. TITLE Analysis of the 4.5-5S rRNA intergenic region in rDNA from alder (Alnus incana) chloroplast JOURNAL Unpublished (1991) STANDARD full staff_entry FEATURES Location/Qualifiers rRNA 1..323 /product="23S ribosomal RNA" /gene="23S rRNA" rRNA 420..522 /product="4.5S ribosomal RNA" /gene="4.5S rRNA" rRNA 779..899 /product="5S ribosomal RNA" /gene="5S rRNA" tRNA 1161..1234 /product="transfer RNA-Arg" /gene="tRNA-Arg" tRNA 1845..1917 /product="transfer RNA-Asn" /gene="tRNA-Asn" BASE COUNT 778 a 685 c 913 g 538 t 2325 others ORIGIN 1 |--------- ---------- ----UUCAAA CGAG---GAA AGGCUUACGG UGGAUA|CCU 61 -AGG|CACCC AG|AG|ACGA GGAAG-GG|C GUA(GUAA-- ----GC-)G| ACG-AAAUGC 121 UUCGGG|GAG UU(------- -----G-AA- AAUA------ -----)AGCG UAG-AUCCGG 181 AGAUU|CCCG AA-UAGG(UC AA)CCU|--- ----(----- --uu--caa) --------ac 241 ug-cugcu(g a-aucca--u g)ggc-agg- ---caa-gag a-caAC|CUA ACGAACU|GA 301 (AACA)UCUU AGU-AGCCAG AGGAAAAGAA AGC(AAAA-- )GCG-AU|UC CCGUAGUAGC 361 a(GGCGA)GC GA-AAUGGGA -GCAGCCUAA Accgu----- ---------- (gaaa---)- 421 ---------- ----acgggg uugu-gggag agcaa----- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- --------ua caagcg---- 781 --ucgugcug cu-aggcGAA gcgg-u(g-- aagu)g-ccg -aac|c(cua )gaUGG(-CU 841 AGAGU)-CCA GUAgccgaaa gcaucacuag cuua------ ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- -------cgc ucugaccc-- -GAGUAGCAU GGGG(CACGU 1141 GGAA)UCCCG UGUGAAUCAG CAAG(GACCA C)CUUGCAAG GCUAA-AUAC UCCUGGGUGA 1201 CCGAUAGUGA AGUAGUACC( GUGA)GGGAA GGGUGAAAA- GAACCCC(ca -cc-)GGGGA 1261 GUGAAAUAGA ACAUGAAACC GU---AAGCU CCCAAGCAGU GGGAGGAG-C C--------- 1321 ------(--- ugg---)--- ---------- ---GGCU--C -UGACCGCGU GCCU(GUUGA 1381 AG|A)AUGA| GCCGGCGACU CAUAGGCAGU GGC------- -UUGGUU-AA GGG-(----- 1441 aaccc)-aCC -GGAGCCGUA -GC(-GAAA) GCG----AGU CU(UCA-UA) GGGCAa---- 1501 ---------- ---------- ---------- -----uuGUC ACUGCUUAUG GACCCGAACC 1561 UGGGUGAUCU AUCCAUGAC| CAGGAUGAAG CUUGGG(UGA A)ACUAAGUG GAGGUCCGAA 1621 CCGACUGAU( GUUGAAGA)A UCAG|CGGAU GAGUUGUGGU UAG-GGGU(G AAAU)GCCAC 1681 UCGA-ACCCA GAGCUAGCUG GUUCUCCCCG -AAAUGCGU- (UGAG)-GCG CAGC|A-GUU 1741 GACu------ ---------- ---------g |-gac-|-AU -CUAG|GGGU AA|-AGC-AC 1801 UGU-UUCGGU GC-GG|GCCG C(gaga-)GC GGUACCA-AA UCGAG-GCAA ACUCUGAAUA 1861 |CUAGA-Uau gaccuca--- -a-aauaaca gggguc---a ag|-GUCG-G C-CAGUGAGA 1921 CGAUGGGG(G AUAAG)CUUC AU--CGUCGA GAGGG(AAAC AG)CCCGGAU CACCAGCUAA 1981 GGC|CCCU-A AAUG-ACCG- CUCAGUG--A UAAAGGAGGU -AGGGGUGCA GA---GACAG 2041 CCAGGAGGUU UGC(CUAGAA GCA)GCCAC- CCU|--U(GA A)A|GAGUGC (GUAAUA)GC 2101 |UCACUGAU- CGAGCGCUCU UGC|GCCGAA GAUG-AACGG GGCU-----A AGCGA-UC|U 2161 |GCCGAAGCU |GUGG|gaug ua------(a aaa------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ------)--- ----ggcauc GGUAGGGGAG |CGUU-CCGC CUUAGGG-G- GAAGCACCU- 2521 GC(GCGA)GC A-GCGGUAG| ACGAAGCGGA AGCGAGAAUG UCGGC|UUGA GUAACGCAAA 2581 CAUUGG(UGA GAA-U)CCAA UG|CCCCGAA AACCUA-AGG GUUCCUC-CG CAAGG(UUCG 2641 U)CC|ACGGA GGGUGAGU|C AG|GGCCUAA GAUCAGGCC- --(-GAAA)- --GGCGUAGU 2701 CG-AUGG-AC AACAGG(UGA AUAUU)CCUG U|AC|ug-c- -cccuu-guu ---------- 2761 ---------- ---------- --------gg ucc------- cgagggacgg ag--gaggcu 2821 a-gguua-|g -cc-gaa(-- ag--augg-u -u-------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- --------)a u-cggu-|uc aa-------- ---------g 3061 gacgcaaggu gc---cccu- gcuuuuu-c- aggguaag-- a-------ag g-ggu-ag(a 3121 g-aa---a-) au-|a--ccu cg-------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- -----agcc- 3301 aauguucg-a gua|cca-|- ---------- ---------- ---------- ---------- 3361 -ggcgc(--u ac-g--)gcg cu-------- ---------- ---------- -------gaa 3421 guaacc--ca ugcc-aua-| cucccaggaa aagcucg--a acgaccuuc- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- -aa-caaaag ggua|C|CUG UACCCGAAA- CC(GACACA) 3601 GG|---UAG- GU-AG-GUA- (-GAGAA)-U ACCUA-GG-G GC||GCGAGA CAACUCUCUC 3661 UAAGGAA-CU CGGCAAAAUA GCCCCGUAAC (UUCG)GGAG AAGGGGU|GC CUCC------ 3721 --------u- (-cacaa)-a ---------- -----GGAGG U|C(GC-A)G UGACCAGGCC 3781 CGGG|CGACU GU(UUACCAA AA)ACACAGG UCUCCG|CAA AGUC(GUAA) GACCAUGUAU 3841 GGGGGCUGAC GCC-UGCCCA GU|GCCGGAA GGUCAAGGAA GUUGGUgacc ug------(A 3901 -UGA)---ca ---------- ---------- ---------- ---------g ggg-aGCCAG 3961 CGACCGAAGC C|CCGGUGAA C|GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC 4021 GAAAUUCCUU |GUCGGG(UA AGU)UCCGAC |CCGCACGAA AGGCGUAACG A-UCUGGGCA 4081 CUGUCUCGGA GAGAGACUCG |GUGAAAUA| GACAUGU-CU G(UG-AAGAU G)CGGACUAC 4141 CUGCACCUGG ACAG-AAAGA CCCUAUGA|A GCUUCACUGU |UCCCUGGGA UU|GGCU-UU 4201 GGGCCUUUCC UGCGCAG-CU UAGGUGGAGG GCGAA-GAAG GCCUCCU(UC CG)GGGGGGC 4261 CCGAGCCGUC -AGUGAGAUA -CCACU|CU- GGAAGAGCU- AGAAUUCUAA -CCU-UG--U 4321 GUCA(----- ggacc-uac) -GGGCCAAGG GACAGUCUCA GGUAGACAGU UUCUAUG(GG 4381 G)CGUAG|GC C-UCC(CAAA AGGUAAC)GG AGGC|G|U|G CAAAGGUUUC C|UCGGGCCA 4441 G--(ACGGAG A--)--UUGG CCCUC---GA |GU(G|CAAA G)GC-AGAA- --GGGAG--C 4501 UUGACUGCAA GAC(CCACCC )GUCGAGCAG GGAC(GAAA) GUCGGC|CUU AGUGAUCCGA 4561 CGGUG-CCG( AGUGGA)AGG |GCCGUCGCU CAAC|GGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUGA UCUUCCCCAA GA(GCUCACA )UCGACGGGA AGGUUUGGCA CCUCGAUGUC 4681 |GGCU|C|UU CGC|CACC|U GGGGCU(GUA GUA)UGUU-C C-AAGGGU|U GGGC(UGUUC 4741 )GCCCAUU-A AAGCGGUACG UGAGCUGGGU UCAGAAC|GU C(GUGA)GAC AGUUCGGUCC 4801 AUAUCC|GGU GUGGG|CGUU AGAGCAUU|G A|GAGGA-CC UUUCCC(UAG UAC(GAGA)G 4861 GA-CC)GGGA AGG|-ACGCA CCUCUGGUGU ACCAGU|UAU CGU(GC-CC) ACGGUAAACG 4921 CUGGGUAGCC AAGUGCGGA- GCGG-AUAAC UGCU(GAAAG CAUCUA)AGU AGUAAGCCCA 4981 CCCC|AAGAU GAGUGCUCU| CC|U-----( -//---)--- -----G-AAG G|UC|ACGGC 5041 (GAGACGA)G CCGU-UUa-- ---------- --------uc auuacGAUAG |GUGUC|AAG 5101 UGGAAGUGCA (GUGA)UGUA U|GCAGCUG| A|GGCAUCCU AACAGACCGG --UAG|ACUU 5161 GAAC-----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS (3)-strame 5239 bp RNA RNA 21-JAN-1998 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 5239 others ORIGIN 1 |x~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 61 ~~~~|~~~~~ ~~|~~|~~~~ ~~~~~~~~|~ ~~~(~~~~~~ ~~~~~~~)~| ~~~~~~~~~~ 121 ~~~~~~|~~~ ~~(~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 181 ~~~~~|~~~~ ~~~~~~~(~~ ~~)~~~|~~~ ~~~~(~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~(~ ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~(~~~ )~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~-~------- 1321 ------~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 1381 ~~|~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 1801 ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~(~~ ~)~|~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~~-~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~-~~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~)~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~-~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~--~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4561 ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~ // LOCUS chl.O.sine 5239 bp RNA RNA 11-JAN-191 DEFINITION Chloroplast Odontella sinensis subsp. 2 operons on chl. genome. identical. ACCESSION No information KEYWORDS No information. SOURCE Chloroplast Odontella sinensis subsp. 2 operons on chl. genome. identical. ORGANISM Chloroplast Odontella sinensis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: Z67753 LOCUS OSCHLPLXX 119704 bp DNA PLN 13-FEB-1996 DEFINITION O.sinensis chloroplast DNA, complete genome. ACCESSION Z67753 NID g1185127 KEYWORDS 16S ribosomal RNA; 16S rRNA gene; 23S ribosomal RNA; 23S rRNA gene; 30S ribosomal protein S10; 30S ribosomal protein S11; 30S ribosomal protein S12; 30S ribosomal protein S13; 30S ribosomal protein S14; 30S ribosomal protein S16; 30S ribosomal protein S17; 30S ribosomal protein S18; 30S ribosomal protein S19; 30S ribosomal protein S2; 30S ribosomal protein S20; 30S ribosomal protein S3; 30S ribosomal protein S4; 30S ribosomal protein S5; 30S ribosomal protein S6; 30S ribosomal protein S7; 30S ribosomal protein S8; 30S ribosomal protein S9; 50S ribosomal protein L1; 50S ribosomal protein L11; 50S ribosomal protein L12; 50S ribosomal protein L13; 50S ribosomal protein L14; 50S ribosomal protein L16; 50S ribosomal protein L18; 50S ribosomal protein L19; 50S ribosomal protein L2; 50S ribosomal protein L20; 50S ribosomal protein L21; 50S ribosomal protein L22; 50S ribosomal protein L23; 50S ribosomal protein L24; 50S ribosomal protein L27; 50S ribosomal protein L29; 50S ribosomal protein L3; 50S ribosomal protein L31; 50S ribosomal protein L32; 50S ribosomal protein L33; 50S ribosomal protein L34; 50S ribosomal protein L35; 50S ribosomal protein L36; 50S ribosomal protein L4; 50S ribosomal protein L5; 50S ribosomal protein L6; 5S ribosomal RNA; 5S rRNA gene; acp gene; acyl carrier protein; apocytochrome f; ATP synthase CF1; ATP synthase CFO; atpA gene; atpB gene; atpD gene; atpE gene; atpF gene; atpG gene; atpH gene; atpI gene; cfxQ gene; chaperonin; chlI gene; clp protease; clpC gene; complete genome; CP43 chlorophyll apoprotein; CP47 chlorophyll apoprotein; cytochrome b559; cytochrome b6; cytochrome b6/f complex; cytochrome c550; D1 reaction-center protein; D2 reaction-center protein; DNA-replication helicase; dnaB gene; dnaK gene; elongation factor tu; Fe-S polypeptide; ferredoxin; ferredoxin-binding protein II; groEL gene; orf 179; ORF 25; ORF 312; ORF 644; ORF113; ORF128; ORF148; ORF181; ORF204; ORF251; ORF263; ORF26a; ORF26b; ORF27; ORF29; ORF29a; ORF29b; ORF31; ORF319; ORF34; ORF355; ORF355 gene; ORF36; ORF380; ORF382; ORF41; ORF42; ORF44; ORF455; ORF46; ORF486; ORF497; ORF61; ORF64; ORF73; ORF74; ORF99; P700 apoprotein A1; P700 apoprotein A2; petA gene; petB gene; petD gene; petF gene; petG gene; petK gene; phosphoprotein; plastocyanin-binding; preprotein-translocase; protein I; protein J; protein K; protein L; protein M; protein N; protein T; protein W; protein X; psaA gene; psaB gene; psaC gene; psaD gene; psaE gene; psaF gene; psaI gene; psaJ gene; psaL gene; psaM gene; psbA gene; psbB gene; psbC gene; psbD gene; psbE gene; psbF gene; psbH gene; psbI gene; psbJ gene; psbK gene; psbL gene; psbN gene; psbT gene; psbV gene; psbW gene; psbX gene; PSI; PSII; rbcL gene; rbcR gene; rbcs gene; RNA polymerase; RNA polymerase b''-chain; RNA polymerase b'-chain; RNA polymerase b-chain; rpL1 gene; rpl11 gene; rpl12 gene; rpl13 gene; rpl14 gene; rpl16 gene; Rpl18 gene; rpL19 gene; rpl2 gene; rpl20 gene; rpl21 gene; rpl22 gene; rpl23 gene; rpl24 gene; rpl27 gene; rpL29 gene; rpL3 gene; rpL31 gene; rpl32 gene; rpl32' gene; rpl33 gene; rpL34 gene; rpl35 gene; rpl36 gene; rpL4 gene; rpl5 gene; rpl6 gene; rpoA gene; rpoB gene; rpoC1 gene; rpoC2 gene; rps10 gene; rps11 gene; rps12 gene; rps13 gene; rps14 gene; rps16 gene; rps17 gene; rps18 gene; rps19 gene; rps2 gene; rps20 gene; rps3 gene; rps4 gene; RPS5 gene; RPS6 gene; rps7 gene; rps8 gene; rps9 gene; rubisco large subunit; rubisco small subunit; secA gene; secY gene; thiG gene; trnA gene; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-fMet; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu; tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser; tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val; trnC gene; trnD gene; trnE gene; trnF gene; trnfM gene; trnG gene; trnH gene; trnI gene; trnk gene; trnL gene; trnM gene; trnN gene; trnP gene; trnQ gene; trnR gene; trnS gene; trnT gene; trnV gene; trnW gene; trnY gene; trsE gene; tufA gene; ycf12 gene; ycf16 gene; ycf24 gene; ycf25 gene; ycf3 gene; ycf30 gene; ycf31 gene; ycf32 gene; ycf33 gene; ycf35 gene; ycf39 gene; ycf4 gene; ycf40 gene; ycf41 gene; ycf42 gene; ycf43 gene; ycf44 gene; ycf45 gene; ycf46 gene; ycf47 gene; ycf5 gene; ycf6 gene; ycf7 gene; ycf9 gene. SOURCE Odontella sinensis. ORGANISM Chloroplast Odontella sinensis Eukaryotae; mitochondrial eukaryotes; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Biddulphiophycidae; Eupodiscales; Eupodiscaceae; Odontella. REFERENCE 1 (bases 1 to 119704) AUTHORS Kowallik,K.V. JOURNAL Unpublished REFERENCE 2 (bases 1 to 119704) AUTHORS Kowallik,K.V. TITLE Direct Submission JOURNAL Submitted (10-NOV-1995) K.V. Kowallik, Heinrich-Heine Universitaet Duesseldorf, Universitaetsstr. 1 Geb.26 13/02/46, D- 40225, Duesseldorf, FRG COMMENT NCBI gi: 1185127 FEATURES Location/Qualifiers source 1..119704 /organism="Odontella sinensis" /chloroplast misc_feature 1..7725 /note="IRa" tRNA 267..340 /gene="trnP" /product="tRNA-Pro (ugg)" CDS 478..1545 /gene="ORF355" /note="NCBI gi: 1185128" /codon_start=1 /db_xref="PID:g1185128" /translation="MGMSLQLLGINLRIKVILATSWLFENIAKVCGYPTKTLGMPIRT DVIPGYGLPIHQTRVPPFANPTTFLEAVFGNIPQPSTIEKFYYESPQDGYYNFYIPHY RNVVFLPDWLSKWIQLHFDLGIDTVGLETIRNTLFSMLVYFYFFAELRIMLSYFISIN PYTRPWVYLISLTDWIYDILFHLGISKRVVLLGFPLLPILIHAALGNLIDSLNHLVFT MPFLPSEGEPGEFLIDGTARKVLLFRYLPALWTSEPIPDRLREFWYTERPEIYQFMKK NYGHLDIDFLPDEILKQIYQFKHDQIDPNSLTKNVEQFKVLGAQLISDSTIDFYQFSN CFVHKQEILFTFFSDYMDRLI" rRNA 2210..3694 /gene="16S rRNA" /product="16S ribosomal RNA" tRNA 3761..3835 /gene="16S rRNA" /product="tRNA-Ile (gau)" tRNA 3838..3910 /gene="trnA" /product="tRNA-Ala (ugc)" rRNA 3976..6866 /gene="23S rRNA" /product="23S ribosomal RNA" rRNA 6938..7063 /gene="5S rRNA" /product="5S ribosomal RNA" CDS 7318..7428 /gene="ycf32" /note="NCBI gi: 1185129" /codon_start=1 /product="ORF36" /db_xref="PID:g1185129" /translation="MDSRLLVIAAPLLVAASWALFNIGRLAIQQIQRLSA" CDS 7563..7739 /gene="rpl32" /note="NCBI gi: 1185130" /codon_start=1 /product="50S ribosomal protein L32" /db_xref="PID:g1185130" /translation="MAVPKKRTSKAKKNARKSVWKKKADKAAKKSLSLAKSVLQGKTT SFVYSLYIDELFSI" CDS 7825..8073 /gene="psaC" /note="NCBI gi: 1185131" /codon_start=1 /product="PSI, Fe-S polypeptide SU VII, 9 kDa" /db_xref="PID:g1185131" /translation="MSHTVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKSGQIASSPR VEDCVGCKRCETACPTDFLSVRVYLGRLETTRSLGLAY" CDS complement(8139..9077) /gene="ycf5" /note="NCBI gi: 1185132" /codon_start=1 /product="ORF312" /db_xref="PID:g1185132" /translation="MDWDIIQNLSSNLVFGILLFAMTIYWISLSFFKWTKNLSQVGKI SAIVANILLFFILGSRWIVAGYFPLSNLYESLLFLTWTLLTIYLYVEFKTKSKLVGAI LIPVALLINGFANLTLSVDMQKSSPLVPALQSNWLMLHVSMMMLSYGTLIMGSLLCIL FLVISKYQDIDLQILDESSLPLYNIMLDYYEAKLFSPSDEVSELGKLKLLQSLDNWSY RIIGLGFPFLTIGIIAGGVWANEAWGSYWSWDPKETWALITWIVFATYLHSRITKGWE GKKTAILGGLGFFVIWICYLGVNFLGKGLHSYGWLS" CDS 9287..9427 /gene="ycf32" /note="A+T-rich; NCBI gi: 1185133" /codon_start=1 /product="ORF46" /db_xref="PID:g1185133" /translation="MEKIKKSYLLVAKLKFKYFCLKPYSLNSTTKFILKIIKNKSMLI FN" CDS 9482..9772 /gene="rps6" /note="NCBI gi: 1185134" /codon_start=1 /product="30S ribosomal protein S6" /db_xref="PID:g1185134" /translation="MSATKKYEMMILLTEEFNDSELKTWAFNYAKALRKLSASEISVI SRGKRDLSYYINNQKKGNFIQINFSSMPKYVDNFSKNLKFDSNVLRFLILNK" tRNA 9852..9922 /gene="trnN" /product="tRNA-Asn (guu)" CDS 9944..10729 /gene="thiG" /note="NCBI gi: 1185135" /codon_start=1 /function="involved in thiamine biosynthesis" /db_xref="PID:g1185135" /translation="MINNSDTLKIGNKTFNSRLMLGSGKYRTIENAVNSIITSDCEIL TVAVRRLPTKLTNDNTSFLKSLDWNKLWLLPNTAGSQTAEEAIRMAFLGHELACQLGQ EDNFFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFTVLPYINADPMLALHLEDLGCA TVMPLGSPIGSGQGLNNISNLQIIIENSSIPVIIDAGIGTPSEAAKSMELGADGVLLN TAIAQAKTPEKMALAMKLAVEAGRLGYLAGRMEKNRMQVQVLH" CDS complement(10894..13551) /gene="clpC" /note="NCBI gi: 1185136" /codon_start=1 /product="caseinolytic-like Clp protease" /db_xref="PID:g1185136" /translation="MFEKFTEGAIKVIMLSQEEARRMGHNFVGTEQLLLGIIGQRHGI GARALKKQKVTLKKARREIELYIGRGTGFVASEIPFTPRAKRVLEMAVHEGKDLGQNF VGTEHILLALISESDGVAMRTLDKLGVNIPKLRNLILMYIEENQEEILRPLTQAEKFL LEREKKGSSTPTLDEYSENISKEAVDGKLDPVIGRDKEIHEVIKVLARRRKNNPVLIG EPGVGKTAVAEGLAQLIIAEKAPDFLDGNLLMALDLGSILAGTKYRGEFEERIKRIVE EVQNDSAIILVIDEIHTLVGAGAAEGAVDAANILKPALARGKFRCIGATTIDEYRKYI ERDPALERRFQPVHVKEPTVGVTIEILLGLRSKFEEHHTLSYHDKAVEQAAILADKFI ADRFLPDKAIDVLDEAGSRVRLENRRLPRGMKRLLKELQDTLRDKEESIKEHDFDIAK QLVDHEMEVRTHIRIMKQSILTNETLGLARKEIDTVLEGDVAEVIAGWTGIPVNKISD SESKRLLTMEETLHERLIGQHHAIVSVSKAIRRARVGLRNPDRPIASFIFAGPTGVGK TELTKALSEYMFGNEDSMIRLDMSEYMEKHTVAKLIGSPPGYVGYNEGGQLTEAVQTK PYSVVLLDEVEKAHPDVFNLLLQILDDGRLTDSKGRTIDFRNTMIIMTTNLGAKIIEK ESGIKPKTKQDKPAFRIDESGCLGWEPTPEPIKDSALFEKVTELVNEELKEFFRPEFL NRIDEIIVFNHLTKYDIWEICGLMVKQLQKRLEEKELTLEVDVSVRNLLTEEGYDPVY GARPLRRAVMRLLEDTLAQQCLSKPLYPGTILRVSRVKEEGTLASYTNDVKVEIDYRR VDPRLLEQAEEKKEQNQEETKQNILKTDA" tRNA 13780..13850 /gene="trnC" /product="tRNA-Cys (gca)" tRNA 13921..14006 /gene="trnL" /product="tRNA-Leu (uaa)" rRNA complement(47296..47421) /gene="trnR" /product="5S ribosomal RNA" rRNA complement(47493..50383) /gene="trnR" /product="23S ribosomal RNA" tRNA complement(50449..50521) /gene="trnR" /product="tRNA-Ala (ugc)" tRNA complement(50524..50598) /gene="trnR" /product="tRNA-Ile (gau)" rRNA complement(50665..52149) /gene="trnR" /product="16S ribosomal RNA" CDS complement(52814..53881) /gene="trnR" /note="NCBI gi: 1185184" /codon_start=1 /product="ORF355" /db_xref="PID:g1185184" /translation="MGMSLQLLGINLRIKVILATSWLFENIAKVCGYPTKTLGMPIRT DVIPGYGLPIHQTRVPPFANPTTFLEAVFGNIPQPSTIEKFYYESPQDGYYNFYIPHY RNVVFLPDWLSKWIQLHFDLGIDTVGLETIRNTLFSMLVYFYFFAELRIMLSYFISIN PYTRPWVYLISLTDWIYDILFHLGISKRVVLLGFPLLPILIHAALGNLIDSLNHLVFT MPFLPSEGEPGEFLIDGTARKVLLFRYLPALWTSEPIPDRLREFWYTERPEIYQFMKK NYGHLDIDFLPDEILKQIYQFKHDQIDPNSLTKNVEQFKVLGAQLISDSTIDFYQFSN CFVHKQEILFTFFSDYMDRLI" tRNA complement(54019..54092) /gene="trnR" /product="tRNA-Pro (ugg)" BASE COUNT 40523 a 19364 c 18721 g 41096 t ORIGIN BASE COUNT 892 a 524 c 798 g 692 t 2333 others ORIGIN 1 |-auaguuuc uguguua--- ---AAUUCAA GGAAC--UAA GAGUUUAUGG GGAAUA|CCU 61 -UGG|CAUUC AG|AA|GCGA AGAAG-GA|C GUG(GUUA-- ----CC-)G| ACG-AUAUGC 121 UUCGGG|GAG CU(------- -----G-GA- GACA------ -----)AGCU ACG-AUCCGG 181 AGGUC|UCCG AA-UGAG(GA AA)CUU|ua- ----(----- -----auaa) ------uaAC 241 UUCUUAUU(G A-AUUCA--U A)GAU-AAG- ---AAa-gAG C-gaAC|CUA GAGAAUU|GA 301 (AACA)UCUU AGU-AUCUAG AGGAAAAGAA AGU(AAAA-- )ACG-AU|UC CCUGAGUAGC 361 -(GGCGA)GC GA-AACGGGA -ACAGCCUAA Acuuaauu-- ---------- (uuu----)- 421 ---------- -aauuaaggg uagu-gggac aauauu---- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------a acgauuua-- 781 -augugacaa uu-agagGAA caag-u(uug gaau)a-cuu -gac|c(aua )gaGAG(-UG 841 AAAGU)-CUC GUAcuugaaa auugaaac-a aucu------ ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- -------agu uggauccc-- -aAGUAGCAU GGAG(CACGU 1141 GAAA)UUCCG UGUGAAUCUG CGAG(GACCA C)CUCGUAAG GCUAA-AUAU UCCUGAAUGA 1201 CCGAUAGUGA AAUAGUACC( GUGA)GGGAA AGGUGAAAA- GAACCCC(gg -ga-)GGGGA 1261 GUGAAA-AGA ACAUGAAACC AU---AAACU UACAAGCAGU AGGAGGAC-G ---------- 1321 ------(-ac uaaaa-)--- ---------- ----CGU--C -UGACUGCGU GCCU(GUUGA 1381 AG|A)AUGA| GCCGGCGACU UAUAGUUAGU GGC------- --AGGUU-AA GGca(----- 1441 gugaa)ugC- UGUAGCCAUA -GU(-GAAA) GCG----AGC CU(GAA-UA) GGGCG----- 1501 ---------- ---------- ---------- ----uuugUC UCUAAUUAUA GACCCGAACC 1561 CGGAUGAUCU AACCAUGGU| CAGGUUGAAG CUUAGG(UAA U)ACUAAGUG GAGGACCGAA 1621 CCGACUGAU( GUUGAAAA)A UCAG|CGGAU GAACUGUGGU UAG-GGGU(G AAAU)GCCAA 1681 UCGA-AUUCG GAGCUAGCUG GUUCUCCCCG -AAAUGCGU- (UUUG)-GCG CAGC|G-GUA 1741 AAU------- ---------- ---------g |uuau-|aAU -UUAG|GGGU AA|-AGC-AC 1801 UGU-UACGUA UGCGG|GCUG G(uaau-)UC GGUACCA-AA UCGUU-GCAA ACUAAGAAUA 1861 |CUAAA-U-- ---------- ---------- ---gua---- -u|AGUUU-A C-CAGUGAGA 1921 CUGUGGGG(G AUAAG)CUCC AU--UGUCAA GAGGG(AAAC AG)CCCAGAG CACCAGUUAA 1981 GGC|CCCAA- AAUA-AUUG- CUAAGUG--A UAAAGGAGGU -GGGAGUGCA UA---AACAA 2041 UCAGGAGGUU UGC(UUAGAA GCA)GCAAU- CCU|--U(UA A)A|GAGUGC (GUAAUA)GC 2101 -UCACUGAU- CGAGUAAACC UGC|GCCGAA AAUGUA-UGG GACU-----A AGUAA-UU|U 2161 |GCCGAAACU |GUGC|gaua uauu----(u caagauu--- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ------)--- --aauauauc GGUAGGGGAG |CGUU-CUGU UGUAGAU-C- GAAGUAUUA- 2521 GC(GUAA)GC G-GAUAUGG| ACGAAGCAGA AGUGAGAAUG UCGGC|UUGA GUAACGAAAA 2581 UAUAGG(UGG GAA-U)CCUA UA|CCCCGAA AACCCA-AGG UUUCCUC-CG GAAGG(CUCG 2641 U)CC|GCGGA GGGUAAGU|C AG|GACCUAA GGCGAGGCU- --(-GAAA)- --AGCGUAGU 2701 CG-AUGG-AC AACGGG(UUA AUAUU)CCCG U|AC|ca-u- -uuuuu-auu ---------- 2761 ---------- ---------- --------ga cau------- cgagggacgg ag--aaggcu 2821 a-agcua-|g -cc-gga(-- ua--uugg-u -u-------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- --------)a c-cggu-|uu aa-------- ---------g 3061 cguucgagau ---------- ---------- ---------- ----guagag a-aac-gg(u 3121 g-aa---a-) ac-|g--uuu ug-------- ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- -----aguu- 3301 aaggcgcg-a aua|cga-|- ---------- ---------- ---------- ---------- 3361 -gaugc(--u ac-g--)gcg uu-------- ---------- ---------- -------gaa 3421 guaguc--ua uguc-aug-| cuuccaagaa aagcuug--c acugucaua- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- -aa-uaaa-a aaug|C|CUG UACC-AUAA- CC(GACACA) 3601 GG|---UGG- GU-AG-GUA- (-GAGUA)-U ACUAA-GG-G GC||GCGAGA UAACUCUCUC 3661 UAAGGAA-CU CGGCAAAAUA ACUCCGUAAC (UUCG)GGAG AAGGAGU|GC CUUAU----- 3721 ---------- (-uuau-)-- ---------- ----AUAAGG U|U(GC-A)A UAACAAGAUC 3781 CAAG|CAACU GU(UUACCAA AA)ACACAGG UCUCCG|CUA AGUC(GUAA) GACGAUGUAU 3841 GGGGGCUGAC GCCU-GCCCA GU|GCCAGAA GGUUAAAGAA GUUGGUUAGU --------(G 3901 -UAU)----- ---------- ---------- ---------- ---------G CGA-AGCUGA 3961 UAACUGAAGC C|CUGGUGAA C|GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC 4021 GAAAUUCCUU |GUCGGG(UA AGU)UCCGAC |CCGCACGAA AGGCGUAAUG A-UUUGGAUA 4081 CUGUCUCGGA GAGAGGCUCG |GUGAAAUA| GACUUGU-CU G(UG-AAGAU G)CGGACUAC 4141 CUGCACCUGG ACAG-AAAGA CCCUAUGA|A GCUUUACUGU |AACUUGAAA UU|GAAA-UU 4201 GGACUUUAUU CGCGCAG-UA UAGGUGGGAG GCGUU-GAGA AUACUCU(UG CG)GGAGUAU 4261 AGGAGCUAUU -AGUGAGAUA -CCACU|CU- UAUAAUGUU- AGGUUUCUAA -CUUUGA--- 4321 ACCA(----- ---uu-auc) U-GGUCAAAG AACAGUUUCA GGCGGGCAGU UUGACUG(GG 4381 G)CGGUC|GC U-CCC(AAA- UGGUAAC)GG AGGC|G|U|A CAAAGGUUUC C|UCUGAACG 4441 G--(AUAGAA A--)--UCGU AUCUA---GA |GU(A|UAAA G)GC-AUAA- --GGAAG--C 4501 UUGACUGUGA GAC(CUACAA )GUCGAGCAG GGAC(GAAA) GUCGGU|CUU AGUGAUCUGA 4561 CGGUA-CUG( AGUGGA)AAG |GCCGUCACU CAAC|GGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUGA UCUCCCCCAA GA(GUUCACA )UCGACGGGG AGGUUUGGCA CCUCGAUGUC 4681 |GGCU|C|AU CGC|AUCC|U GGGGCG(GUA GUA)CGUC-C --AAGGGU|U GGGC(UGUUC 4741 )GCC-AUG-A AAGCGGUACG CAAGCUGGGU UCAGAAC|GU C(GUGA)GCA AGUUCGGUCC 4801 AUAUCC|GGU GUAGG|CGUU AGAAUAUU|G A|GAGGA-GC CUUCUU(UAG UAC(GAGA)G 4861 GA-CC)GAAA AGG|-ACAUA CCUCUGGUGU ACCAGU|UAU CGU(GC-CA) ACGGUAAACG 4921 CUGGGUAGCU AUGUAUGGA- GUGG-AUAAC CGCU(GAAAG CAUCUA)AGU GGGAAGCCCA 4981 CCUC|AAGAU AAGUAUUCU| CA|UCAC--( auaa--)--G UGA-GU-AAG G|UC|ACGGU 5041 (AAGACUA)A CCGU-UU--- ---------- ---------- -----GAUAG |GCAUU|AAG 5101 UGUAAGUACA (GUAA)UGUA U|GU-GCUG| A|GAUGUCCU AACAGACCGA --GGA|CUUG 5161 AAUUa----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| // LOCUS chl.P.litt 5239 bp RNA RNA 11-JAN-191 DEFINITION Pilayella littoralis subsp. was Pylaiella littoralis. ACCESSION No information KEYWORDS No information. SOURCE Pilayella littoralis subsp. was Pylaiella littoralis. ORGANISM Pilayella littoralis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 5239) Corresponding GenBank entry: X61179 ID CHPLIB standard; DNA; ORG; 2957 BP. XX AC X61179; XX DT 21-APR-1993 (Rel. 35, Created) DT 21-APR-1993 (Rel. 35, Last updated, Version 7) XX DE P.littoralis chloroplast DNA for 23S rRNA (partial) and 5S rRNA XX KW 23S ribosomal RNA; 5S ribosomal RNA; ribosomal RNA; transfer RNA; KW transfer RNA-Ala; transfer RNA-Ile. XX OS Pylaiella littoralis OC Eukaryota; Plantae; Thallobionta; Chromophycota; Phaeophyceae. XX OG Chloroplast XX RN [1] RP 1-2957 RA Somerville C.C.; RT ; RL Submitted (31-JUL-1991) on tape to the EMBL Data Library by: RL C.C. Somerville, Centre d'Etudes Oceanologiques et de, Biologie RL Marine, CNRS-UPR 4601, BP 74, 29680 Roscoff Cedex, FRANCE XX RN [2] RP 1-2957 RA Somerville C.C., Jouannic S., Martin W.F., Kloareg B., RA Loiseaux-de Goer S.; RT "Secondary structure of a chloroplast 23S rRNA gene from the grown RT alga Pylaiella littoralis"; RL Plant Mol. Biol. 21:779-787(1993). XX FH Key Location/Qualifiers FH FT source 1..2957 FT /organism="Pylaiella littoralis" FT /chloroplast FT /dev_stage="gametophyte and sporophyte" FT /clone_lib="pBR325" FT /clone="e259, e70, e21" FT - 1..2957 FT /usedin=M21373:rrn_operon FT - 1..2801 FT /usedin=M21373:23S_rRNA FT rRNA 2825..2945 FT /gene="5S rRNA" XX SQ Sequence 2957 BP; 916 A; 536 C; 788 G; 717 T; 0 other; BASE COUNT 865 a 513 c 759 g 664 t 2438 others ORIGIN 1 |--------- ---------- ----nnnnnn nnnn---nnn nnnnnnnnnn nnnnnn|nnn 61 -nnn|nnnnn nn|nn|nnnn nnnnn-nn|n nnn(nnnn-- ----nn-)n| nnn-nnnnnn 121 nnnnnn|nnn nn(------- -----n-nn- nnnn------ -----)nnnn nnn-nnnnnn 181 nnnnn|nnnn nn-nnnn(nn nn)nnn|--- ----(----- --nn--nnn) --------nn 241 nnnnnnnn(n n-nnnna--u a)ggc-agg- ---a-aagag c-gaAC|CUA GCGAAUU|GA 301 (AACA)UCUU AGU-AGCUAG AGGAAAAGAA AGU(AAAA-- )ACG-AU|UC CCUUAGUAGC 361 -(GGCGA)GC GGACCGGGAA -gaAGGCUUA Aaccuuucau uugaa----- (uuuu---)- 421 ----uucuaa agaaaggu-g uugu-ggggg guauu----- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---aaaauaa 781 aguacauugg uu-AGACGAA UUAG-u(u-g gaau)accua aauc|c(cua )gAAAG(-UG 841 AAAAU)CCUU GUaguccgaa aaccuuuaau ucuuuaguuu gauuag---- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- --------au accauccc-- -GAGUAGCAU GGGG(CACGU 1141 GAAA)UCCCG UGUGAAUCUG CGAG(GACCA C)CUCGUAAA GCUAA-AUAC UACUGAAUGA 1201 CCGAUAGUGU AAUAGUACC( GUGA)GGGAA AGGUGAAAA- GAACC--(gg -ga-)GGGGA 1261 GUGAAA-AGA ACAUGAAACC GU---AAGCU UACAAGCAGC AGAAGGAC-g ---------- 1321 ------(-ac uuuuaa)--- ---------- ----cGU--C -UGCCUGCGU GCCU(GUUGA 1381 AG|A)AUGA| GCCGGCGACC UGUAGUUAGU GGC------- -AAGGUU-AA GGUA(----- 1441 aaaaa)UACU -GGAGCCAUA -GU(-GAAA) ACG----AGU CU(UAA-UA) GGGCGU---- 1501 ---------- ---------- ---------u gc-a-guGUC ACUAAUUACG GACC-GAACC 1561 CGGAUGAUCU AACCAUGGC| CAGGAUGAAG CUUAGG(UAA U)ACUAAGUG GAGGUCCGAA 1621 CUGACUGAU( GUUGAAAA)A UCAG|CAGAU GAGCUGUGGU UAG-GGGU(G AAAU)GCCAA 1681 UCGA-AUUCG GAGCUAGCUG GUUCUCCCCG -AAAUGUGU- (UUAG)-GCG CAGC|G-GUU 1741 AGU------- ---------- ---------g |uuau-|aAU -GUAG|GGGU AA|-AGC-AC 1801 UGC-UUCGGU GC-GG|GCUG G(uaau-)UC GGUACCA-AA UCGAU-GCAA ACUCUGAAUA 1861 |CUACa-u-- ---------- ---------- ---gua---- -c|AGCUA-A C-CAGUAAGA 1921 CUAUGGGG(G AUAAG)CUCC AU--UGUCAA GAGGG(AAAC AG)CCCAGAU CACCAGCUAA 1981 GGC|CCCU-A AAUA-AUUA- CUAAGUG--G CAAAGGAGGU -GGGAAGACU UA---AACAA 2041 CCAGAAGGUU UGC(UUAGAA GCA)GCAAU- CCU|--U(UA A)A|GAGUGC (GUAAUA)GC 2101 |UCACUGGU- CGAGUAAUCC UGC|GCCGAA AAUG-AACGG GACU-----A AGUAA-UU|U 2161 |GCCGAAGCU |GUGA|gauu a-------(a aaaacuaau( aauaaua)au uaga------ 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ------)--- -----uaauc GGUAGGGGAG |CGUU-CUGU UUUAGGU-U- GAAGCGUUA- 2521 GC(GUAA)GC --GGUGUGG| ACGAAGCAGA AGUGAGAAUG UCGGC|UUGA GUAGCGAAAA 2581 CAUGGG(UGA GAA-U)CCGA UG|CCCUGAA AACCUA-AGG UUUCCUC-CG GAAGG(CUCG 2641 U)CC|GCGGA GGGUAAGU|C AG|GACCUAA GGCGAGGCU- --(-GAAA)- --AGCGUAGU 2701 CG-AUGG-AC AAUGGG(UUA AUAUU)CCUA U|AC|ua-u- -ucuuu-auu ---------- 2761 ---------- ---------- ---------- gacaa----- cgagggacga ag--acagcu 2821 a-aacua-|g -cc-aaa(-- ua--cugg-u -u-------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- --------)a u-uggu-|uu aa-------- ---------g 3061 uauacgaggu ---------- ---------- ---------- ----guugag a--aguag(a 3121 g-aaaa-ua) cu-|u-ugag cuga------ ---------- ---------- ---------- 3181 ---------- ---------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ------guua 3301 ugaauacg-g aau|aau-|- ---------- ---------- ---------- ---------- 3361 --gugu(--g ca-u--)uau ug-------- ---------- ---------- --------aa 3421 guaguu--ga uguu-aug-| cuuccaagaa aagcuugcac uguca----- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------u aag-uaaa-g aaua|c|CUG UACUCUAAA- CC(GACACA) 3601 GG|---UGG- GU-UG-GUA- (-GAGUA)-U ACCAA-AG-G GC||GCGAGA UAACUCUCUC 3661 UAAGGAA-CU CGGCAAAAUA ACCCUGUAAC (UUCG)GGAG AAGGGGU|AC CU-------- 3721 ---------- (-auu--)-- ---------- -------AGG U|U(GC-A)A UAACAAGGUC 3781 CAAG|CGACU GU(UUACCAA AA)ACACAGG UCUCCG|CUA AGUU(GUAA) GACAACGUAU 3841 GGGGGCUGAC GCC-UGCCCA GU|GCCGGAA GGUUAAAGAA GUUGGUUagu u-------(a 3901 -uu-)----- ---------- ---------- ---------- --------aa cga-CGCUGA 3961 UGACUGAAG- C|CCGGUGAA C|GGC|GGCC GU(AACUAUA )ACGGUC|C( UAA)GGUAGC 4021 GAAAUUCCUU |GUCGGG(UA AGU)UCCGAC |CCGCACGAA AGGCGUAACG A-UUUGGACA 4081 CUGUCUCAGA GAGAGACUCG |GUGAAAUA| GACUUGU-CU G(UG-AAGAU G)CGGACUAC 4141 CUGCACCAGG ACAG-AAAGA CCCUAUGA|A GCUUUACUGU |AACUUGAAA UU|GGUU-UC 4201 GGGUUUUAUU UGCGCAG-CA UAGGUGGGAG GCUUU-GAUA UUAAUCU(UA CG)GGAUUAG 4261 UGGAGUCAUC -AGUGAGAUA -CCACU|CU- AAUAAAACU- AGAAUUCUAA -CCC-UA--u 4321 aucg(----- ---uu-agc) -cgguUAGGG AACAGUUUCA GGCGGGCAGU UUGACUG(GG 4381 G)CGGUC|GC --UCC(UAAA AGGUAAC)GG AGGC|G|U|A CAAAGGUUUC C|UCAGAUCG 4441 G--(UCAGAA A--)--UCGA UCGUA---GA |GU(G|CAAA G)GC-AAAA- --GGAAG--C 4501 UUGACUGUAA GAC(CUACAA )GUCGAACAG AGAC(GAAA) GUCGGU|CUU AGUGAUCUGG 4561 CGAUA-UUG( AGUGGA)AAA |GUCGUCACU CAAC|GGAUA AAAGUUACUC |UAGG|GAUA 4621 ACAG|GCUGA UCUCCCCCAA GA(GUUCACA )UCGACGGGG AGGUUUGGCA CCUCGAUGUC 4681 |GGCU|C|AU CGC|AUCC|U GGGGCG(GUA GUA)CGU--C C-AAGGGU|U GGGC(UGUUC 4741 )GCCCAUG-A AAGCGGUACG UGAGCUGGGU UCAGAAC|GU C(GUGA)GAC AGUUCGGUCC 4801 AUAUCC|GGU GUAGG|CGUU AGAGUAUU|G A|GAGGA-UU CUUCUU(CAG UAC(GAGA)G 4861 GA-CC)GAGA AGA|-ACAUA CCGCUGGUGU ACCAGU|UAU CAU(AC-CA) AUGGUAAACG 4921 CUGGGUAGCU ACGUAUGGA- AAGG-AUAAC CGCU(GAAAG CAUCUA)AGU GGGAAGCCCA 4981 CCUC|AAGAU GAGUACUCU| ua|UUGU--( -gaaa-)--A CAA-GU-AAG A|UC|ACGGC 5041 (AAGACUA)G CCGUUCauuu acuauaccuu cggggauagu uauacGAUAG |GCAUC|AAG 5101 UAGAAGUAUA (GUAA)UAUA U|UAAGCUG| A|GAUGUACU AACAGAUCGA ---GG|ACUU 5161 GAAC-----| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~||||| //