LOCUS E.coli.ref 9262 bp RNA RNA 11-JAN-1980 DEFINITION Escherichia coli. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS No information JOURNAL E.coli:who:Published STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 9262) Corresponding GenBank entry: J01695 Phylo:Eubacteria,Purple,gamma,3 Phylo:Eubacteria,Purple,gamma,3 BASE COUNT 762 a 639 c 912 g 591 t 6358 others ORIGIN 1 |--------- ---------- ---GGUUAAG CGACUAAGCG UACACGGUGG AUG|CCCUGG 61 |CAGUCAG|A G|GCGAUGAA GGA|CGUG(- -CUAA-UC)U |GC-GAUAAG CGUCGGU|-- 121 ---------- ---------- ---------- ---------- ---------- --------AA 181 GGU(GAUAUG A)ACCGUUAU AACCGGCG|- auuUCC-GAA UGGG(-GAAA )CC-C|AGUG 241 UGU------- -(-------- ---------- ---------- -----UUCG- ---)------ 301 --AC-ACACU ---AUCAUUA -A-CU-GA-- ------(--- ---AUC---- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --------CA )-------UA GGU-UAAU-G AGG----CGA 481 AC|CGGGGGA -A--CU|GA( AACA)UC-UA AGUACC-C-C G-AGGAAA-- --AGAAAUC( 541 AAC-C)GA-G AU|UCCCCCA GU---AGC(G GCGA)GCG-A A-----CGGG GAGC------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------GAG CCU-G---AA 841 UCAG------ ---------- ---------- ---------- ---------- UGUGU-GUGU 901 UAGUGGAA-- --G-CGU-C( U---GGAA-- -A)GGCGC-- ---------- --------GC 961 --|G(AUA)C |AGGG-(UGA CAGC)-CCCG UA|--CACAA AAAUGCACAU G-----CUGU 1021 GAGCUCGAU- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGGGCG GGA(CA-CGU 1141 GGUA)UCCUG UCUGAA---U AUGGGG-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 G-ACCAU--- ---------- ---------- ---------- )CCU-CCAAG GCU----AAA 1381 UA-------- ---------- CUCCU-GACU GACCGAUAGU GAAC-CAGUA CC(GUGA)G- 1441 G-GAAAGGCG -AAA-AGAAC CCC(GGCGA- )GGGG-AGUG A-AAAAGAAC C-UGAAAC-C 1501 GUGUA-CGU< AC-AAGCAGU GGGAGCACGC ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- (UU-AG)-GC GUGUGACUGC >------GUA CCU(UUUGUA 2581 UA)AUGG|GU CAGCG-ACUU AUAUUCUGUA GCAAGGUU-A ACC------( -------GAA 2641 UA)------- ---------- ------GGG- ---------- --GAGCCGAA GG(GAAA)CC 2701 G-[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- -]AGUCU(UA ACU)GGGCGU UAAGUUGCA- 3181 -GGG-UAUAG ACCCGAAACC C-GGUG-AUC UAGC-CAUG- GG|C-AGGUU GAAGGUUGGG 3241 (UAAC----- -----)ACUA ACU-GGAGGA CCG-AA---C CG-ACU-AAU (GUUGAAAA) 3301 AUU-A-GCGG AUGACUUGUG GCUGGGG--G U--------- ---------- ---(GAAA-- 3361 --G)G---CC AAU-CAAACC GGGAGAUAGC UGGUUCUCCC CGAAAGCUAU --(UUAG)GU 3421 AGCGC-CUCG -UGAAUU|CA U|-------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 -----CUCCG -G|GGG--UA GA-GC-ACUG UUUCGGCAA- -------GGG GGUC--(AUC 3721 CC-)--GACU UACCA-|ACC CGAU-GCAAA CUGCG-AAUA |CCGGAG--- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ----AAUGUU A|UC-ACGGG -AGA-CACAC -GGC-GGGU( 3901 GCUAAC)GUC CGU-CGUG-A AGAGGG(AA- ACAA)CCC-- AGACCGCC-- AGCUAAG--G 3961 U|CCCA-AAG U-C--AU-GG UUAAG-UG-- ---------- ----GG---- -AAACGAUGU 4021 G--GGAAGGC CCAGACA-GC CAGGAUGUUG GC(UUAG-AA GCA)GCCAUC AU|U(UAA)A 4081 |GAAAGC(GU AAUA)GC|-- -UCACUGGUC -GAGUCGGCC UGC|GC-GGA AGA--UGUAA 4141 CG-GGG-C-- UAAACCAUG| C|-------- --ACCGAA-- --GCUGCGG| (- UUAU-)-GCG UUGUU-GGGU AGGG------ 4441 --GAG|-CG- UU-CU-GU-- --------aa -G-C-CUg-- c------GAA GGUG------ 4501 U-GCU(GUGA -)GGCAUGC- UGG|A-GGU| A--UCAGAA- GUGC-GAA-U GCUGAC|AU- 4561 AAGUAACGAU -AAAGCGGG- U(GAAAA--- ---------- ---------- ---------- 4621 --)GCCCGCU |CGCCGGAA- G-ACC|AAGG GUU|CCUGUC CA-ACG(-UU AAU)CG|GGG 4681 CAGGGUGAGU |-CGACCCCU AAGGCGAGGC C(GAAA)<-- ------(--- ----)----- 4741 ---------- ---------- ---(------ -------)-- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>GGC 4921 GUAGUC-GAU -GGGA-AA-C AGG(UUAAUA UU-)CCUGU| -AC----UUG GU-GUUA-CU 4981 --[------- ---------- ---------- ---------- --------(- -------)-- 5041 ---------- ---------- ---------- ---------- ---------] GCG-AAGGGG 5101 GGAC-----G GAG--AAGGC UA-U-GUUG- -GC-CGGG(C GACGGUUGU) CCCGGU-|UU 5161 AAGCGUGUA- ---------- GGC|-----U GGUU--UUCC ---AGG(CAA AU-)CCGGA- 5221 AA-AU-CAA- GGCUGA---- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- -----GGC-G UGA-----UG 5341 ACGAGGCAC( --UACG--)G UGCUGAAG-C AACAAA---U -GCCCU--GC UUC--CAGGA 5401 AAA-GCCUCU -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ----AAGC-- ---------- ----AUCAGG --UA-ACA-- UC-AAAUCGU 5581 A|CC--CCAA ACC(GACACA )GG|UGG-UC AGGUA(GAGA A)UACCAA-| GGCGC-||U- 5641 UG-A--GAGA AC-UCGG-GU G-AAGGAACU AGGCAA-AAU -GGUGCCGUA AC(UUCG)GG 5701 AGAAGGCAC| GCUGAUAUGU AGGUGAGGUC C(CUCGC)<- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ----->GGAU GGAGCUG-AA AUCAGU|C(- --GAA)GAUA 6601 CCAGCUGGCU G|-CAACUGU UU(AUUAA)A AACACAGCAC UGUG|C--AA A|CAC(---- 6661 gaaa)GUG-- ---------- --G-ACGUAU ACGGUGUG-- ACGCCUGCCC GGU|GCCG-G 6721 AA-GGUUAAU UGAUGGGGUU AGC-(GCAA) GCGAAGCUCU UGAUCGAAGC C|CCGGUAAA 6781 C|GGC|GGCC GU(AAC-UAU A)ACGGUC|C (UAA)GGUAG CGAAAUUCCU U|GUCGG-G( 6841 UAAGU)UCCG AC|CUGCACG AAUGGCGUAA UGAUGGCCAG GCUGU-CUCC ACCCGAGACU 6901 CA|GUGAAAU U|GAACUCGC UG(UGAA-GA UG)CAGUGUA -C-CCG-CGG CAAGACGGAA 6961 AGACCCCGUG A|ACCUUUAC UAU-|AGCUU G---ACA-CU |GAACAUUGA GCCUUGAUGU 7021 GUAGGAUAGG UGGGAGGCUU UGAAGUGUGG AC-------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- --------(- -GCCA)GUCU 7141 GCAU-GGAGC C-GACCUUGA AA-UACCACC |CUUUAAUG- --UUUG-AUG UUCUAACGUU 7201 GACCCG(UAA UC)CGGGUU| GC-------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- ---------- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------G GACAG-UGUC U-GGUG-GGU AG-UUUGACU G(GGG)CGGU 7561 --C|UCCUCC (UAAAGAGUA AC-)GGAG-G A|G|C|ACG- AAGGU-UGGC |UAAUC-CUG 7621 -G(UCG---- GACA)UCAGG AGGUUA|GU( G|C--AAUG) GCAUAAG-CC A-GCUUGACU 7681 -GCGAGCG(U G---ACGG-- )CGCGAGCAG GUGC(-GAAA )GCAGGU|CA --UAG|UGA- 7741 UCCGGUGG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---UUCUG(- --AAU-G--G A---)----- ---------- 7861 -----AGG|G CCAUCGCUCA AC|GGAUAAA AGGUACUC|C GGG|GAUAAC AG|GCUGAUA 7921 CCGCCCAAGA G(UUCAU)AU CGACGGCGGU GUUUGGCACC UCGAUGUC|G GC-U|C|AUC 7981 AC|AUCC|UG G-GGCUG(AA -GU-)AGGUC CCAA-GGGU| AUGGC(UGUU C)GCCAUUUA 8041 AAGUGGUACG CGAGCUGGGU UUAGAAC--- ---------G UC(GUGA)GA CAGUUCGGUC 8101 CCUAUCUGCC GUGGG-C--- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- -----GCUGG AG-AA-CU-G AGGGGGGCUG CUCC(UAGUA 8281 C(GAGA)GGA CC-)GGAGUG G|ACGCAUCA CUGGUGUUCG GGU|-UGUCA U(GCCA)AUG 8341 GCACUGCCCG GUAGCUAA-- AU-GCGGAAG AGAUAAGUGC U(GAAAGCAU C-U-A)AGCA 8401 CGAAACUU-G CCCCGAG-AU GAGU--UCUC C<-------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------> CU|GACCCU( UUA)AGGGUC 8701 -CUGAAGGAA |CGUUG(-AA GACGA)CG-A CGUUG---AU A-G|G-CCGG GUGUGUAAGC 8761 GC--A----- ------(GCG A--------- ---------- ---------- ---------- 8821 ----)----- ------UG-C GU-|UGAGCU A|A----CCG G----UAC-U AAU-GAA-CC 8881 GUGAG|GCUU AACCuu|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (1)-Eukary 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS (2)-Amoebi 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS A.proteus 9262 bp RNA RNA 30-SEP-1988 DEFINITION Amoeba proteus.; 28S ribosomal RNA. ACCESSION M19222 J03648 KEYWORDS 28S ribosomal RNA. SOURCE Amoeba proteus. ORGANISM Amoeba proteus. REFERENCE 1 (bases 1 to 419) AUTHORS Baroin,A., Perasso,R., Qu,L.-H., Brugerolle,G., Bachellerie,J.-P .P. and Adoutte,A. TITLE Partial phylogeny of the unicellular eukaryotes based on rapid sequencing of a portion of 28S ribosomal RNA JOURNAL Proc. Natl. Acad. Sci. U.S.A. 85, 3474-3478 (1988) STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: M19222 Draft entry and printed copy of sequence for [1] kindly provided by A.Baroin, 26-APR-1988. NCBI gi: 173717 BASE COUNT 92 a 118 c 139 g 66 t 8847 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~(~~~~~~ ~)~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~nncg )---accucg gau-cagu-c acg----gcc 481 ac|CCGCUGA -A--UU|UA( AGCA)UA-UU AAUAAG-C-G G-AGGAAG-- --AGAAACC( 541 AAC-C)GG-G AU|ACCCCCA GU---AAU(G GCGA)AUG-A A-----GAGG GUAG------ 601 ---------- ---------- ---------- ---------- -agcuca|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 --aaccgaau ccgucguccc --gcggcggc g--gcagucg gggcccccgg ucccggaggu 781 cgucgucgcc cc-cgagugg gc-ggccgag cugugguu-- ugcagacugg cg-------- 841 --uucgcg-- ---------- ---------- ---------- ---------g cgagc-ccgg 901 cggc-caa-- --g-ugu-g( u-(uggaac- )a)cuc-c-- ---------- --------GC 961 --|C(CUA)G |AGGG-(UGA GAGC)-CCCG UU|--guuug ccggcgcgag c-----ccgg 1021 accgu----c cgccaguc-c ca-------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GCU(----UG 1141 AGAG)UGCAG CCUcca---a -agGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 guaggucc-- ---------- ---------- ---------- )CAU-CCAAa gcu----aaa 1381 ua-------- ---------- CGGCG-GGGA GACCGAUAGU ACAA-AAGUA CU(GUGA)A- 1441 G-GAAAnn~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~------ -~~~~~~~-- -----~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~]~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~----- ----~)~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~-- 3361 --~)~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ --(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~-|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~--~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~-~~~~~ ~~~~~~~~~~ ~~~~-~~~~( 3901 ~~~~~~)~~~ ~~~-~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~-- ~~~~~~~--~ 3961 ~|~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---- ~~~~~~~~~~ 4021 ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~-~~~ ~~~--~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~-- -~~~~~~~~~ ~~~~~~~~~~ ~----~-~~~ ~~~~---~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~- ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-----~-- -~---~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~----~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ---~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ----~~~~~~ ~~~----~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~(~~ ~~~-)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~-~~~ ~|~~~(~--~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~-~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-->(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ -~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(- -~~~~~~~~~ ~~~-)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~-)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (2)-Dictyo 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS D.discoide 9262 bp RNA RNA 09-JAN-1985 DEFINITION Dictyostelium discoideum 5.8S and 26S. ACCESSION No information KEYWORDS No information. SOURCE Dictyostelium discoideum 5.8S and 26S. ORGANISM Dictyostelium discoideum 5.8S and 26S. REFERENCE 1 (bases 1 to 419) AUTHORS No information JOURNAL 4171-4184(1984) STANDARD No information COMMENTS Organism information Culture collection: ? and M19231 Sequence information (bases 1 to 9262) Corresponding GenBank entry: X00601 V00189 Phylo:Eukaryotes,Protozoan This one and M19231 are the same through all of M19231 BASE COUNT 984 a 612 c 861 g 946 t 5859 others ORIGIN 1 |--------- ---------- ---------- ---UUAAGCA UAAACGGUGA AUA|CCUCGA 61 |CUCCUAA|A U|-CGAUGAA GAC|CGUA(- -GCAA-AC)U |GC-GAUAAU UC-acuu|[- 121 gaauugcag- ccuacuggga u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---aguug|A AAUGUU-GAA Cgc-(acau- )-gau|gaca 241 ucggu----c c(-------- ---------- ---------- -----uuuc- ---)gg---a 301 uuag-guguu ---auacuug -g-gu-gaga gugg--(--- ---uc----/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------u )--ccgccuc acc-uuug-u aAG----AUU 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UC AGUAAG-C-G G-AGGAAA-- --AGAAACC( 541 AAC-U)AG-G AU|UCCGUCA GU---AAC(G GCGA)GUG-A A-----GACG GAAU------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------aggu ucaaaccugg 781 aucuc-(uuc ---)---gag gc-uagguga ugugaccu-- -----a---- --uggacuga 841 ugg------- -ag-ccc-gc ---------- ---------- ---------- uguug-ug-a 901 cugc-uaau- --u-ccg-u( u-(uggaau- )u)ucg-a-- ---------- --------GU 961 --|C(GUA)G |AAGG-(UGA UAAC)-CCUG UU|--cgcag uaucacaaca g-----uugg 1021 acuuug---- --ccauua-g cuccac---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGGAAU GUC(----UG 1141 AAAU)UGCAU UCUGAA---- -uGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 AUAAGAUU-- ---------- ---------- ---------- )CAU-CCAAG GCU----AAA 1381 UA-------- --------u- AUGUU-AGGA GAUCGAUAGC AUAC-AAGUA CC(GUGA)G- 1441 G-GAAAGGUG -AAA-AGAAC UUU(ga-aa- )AAAG-GUUU --AAAAGUAU U-UGACAC-C 1501 GUUUA-UGU< gg---aagcg uuuacuug-g accccgau-u aaugacgucg guuuagcucu 1561 aauucuuagg uggccaaagu agagu--guu acgugcugau ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ----caaaag guaacggaca uuugauucau 2101 ugguuaucga cgaggaaggu acucuaaauc ggccaguuac uaacggguga gaucugaugu 2161 uuauaaaaug ggggaugagg cuuaucggcu ugcugguggc ucgcucucaa uaa--uggau 2221 auuggguuuc aucaagagu- gcaaaaugg- -uggcaauuc acua---uua gugguuauua 2281 auuuuguuug cguggc---- -uuggccuug ucuacagguu auc--(uucg -)--gauggc 2341 uu---guagc uuuguuga-- ------acgc gu-gggcuua auguu----- ----gugauu 2401 c-u------- -----(agu- ----)----- ----agcguu acc------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- --------au 2521 aucg-uua-- --------ga gug-ggu--u caa-uaaaug >------UCC CGU(CUUGAA 2581 AC)ACGG|AU CAAGG-AGGC CGUUUUGUGU GCGAGUGu-a agagu----( ----a-auua 2641 aa)------- ---------- ---a-cucu- ---------- --gaCGCGUA UU(GAAA)GA 2701 AA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -----gaaua cuccaaa-ag aucguaac-- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----uacg-- ----)----- ---------g uuac-cuucu -guaaggagu 3061 g--------- ---------- ---------- ---------- -------ccc gaauc-auga 3121 gaa(c-ucug u)uucgaaag -gau-uugcg g]-------- ---------U UGAGCACCU- 3181 -AGA-AUGGG ACCCGAAAGG U-UGUG-AAC UAUG-CCUG- AG|G-AAGGC GAAGUCAGGG 3241 (GAAA----- -----)CUCU GAU-GGAAAC UUG-UC---G CA-AUGCUGA (CGUGCAAA) 3301 UCG-C-UUGU CUAACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACA ACCUAGUAGC UGGUUCCUUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-uGGA -GCa---|-- -|-guau--- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------uc 3661 u-aguUCCAU -C|UuG--UA AA-GACAAUG AUUAGCAGU- -----UUCGG GGGC--(gua 3721 a-u)--GCUC U-CAG-|CUG AUUC-UCAAA CUCUG-AACG |GGUGGGuau -cauuuuaa- 3781 uucacuuaau uggauuuuaa aauuaaauug cacaugugca -------aug ---------a 3841 aa-------- ---------- ----AAUa-g g|aG-CUCUu -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGUGG(GU- UGAA)CCA-- AAUAUUG--- GGAUAAG--A 3961 C|GUCU-AAC --A--UU-CA CUAAU-ag-- --------au -accac---- -AAAAGGUGU 4021 U--AGUUCAU UAAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGUAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -AAAUGGACU AGC|CC-UGA AAA--UGGAU 4141 G--ACg-cua gcAGUGGAU| G|-------- --GUCGAU-- --GCCCAAU| (- -----)-cuu uuaac-gUGU AGGA------ 4441 --AGG|-CG- UG-AA-GG-- --------u- -a-a-cgu-- a------GAA GCUU------ 4501 G-AAU(GUGA -)AUUCGAG- UGG|A-GUU| G--UCUUUA- GUGC-AGA-U CUUGAU|GG- 4561 UAGUAGCAAA -UAUUCAAA- A(gaauuua- ---------- ---------- ---------- 4621 --)CUUUGAA |GGCCGAAGU G-GGA|AAGG GUU|CCAUAA CA-AUG(-GA AUU)CA|CUU 4681 AUGGGUGAGU |-CGA-UCCU AAGG------ ---------- 4921 ----CC-GAA AGGGA-AG-C GGG(UUAAAA UU-)CCUGC| -AC----cau cg-aaug-gg 4981 au[auua--- ---------- ---------- ---------- ------gg(- -guaa--)cc 5041 ---------- ---------- ---------- ---------- -----ga-u] cgu-aauccg 5101 ggac-----a uca--auugg cg-g-ucga- -gg-aaga(G UUAUCUUU-) ucucgu-|UA 5161 A-cauuguc- ------u-ug ggg|u---cc uccg--aauc ----gg(guc aa-)cugga- 5221 ga-cg-agg- auucauc--- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- -------gc- ----acaa-u gGA-----AG 5341 AGCACAGUC( -cuuug--)G AUUGGGUC-u cgcauc---c -gcuaa--au gguC-CUUGA 5401 AAA-ccggau -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------u augguauu-- ---------- ----uaaucc --ua-uuu-- gg-uguUCGU 5581 A|CC--AAUA ACC(ACAUCA )AG|UCU-CC AAAGU(AAAU A)ACCUCU-| AGUCA-||Aa 5641 UA-U--AUUA AU-AUAA-AU A-AAGGGAAU CAACAA-AAC -CAGUCUAUA AC(UUCA)GG 5701 GUAAAGGUU| AGCUCUAAA- ---------- ------------ -------UUU AGAACU|G(- --UGA)CGAU 6601 CACCGGGAAU C|-CAACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--UA A|GCU(---- 6661 uaaa)AGC-- ---------- --U-UUUGAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaga) -----uucaa ----CCUAGC A|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUCAA UGAGAUUCCC ACUGU-CCCU AACUACUAUA 6901 CA|GCGAAAC C|acu-gCAA GG(GGAA-CG GG)CCUUGCA -A-AAA-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCU G---AUA-UU |GCAUAGUGA CCUAAAAGGU 7021 GUAGAAUAGG UGGGAGGG-- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -GCAA)---- 7141 --------CC C-GACGGUGA AA-UACCACC |CCUUUUGG- -CGUUA-CUU UGCUAAc--- 7201 ---------- ---------| --g AACAG-UUUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUUUGU (UAAAAGAUA AC-)GCAA-G U|G|U|CCA- AAGGC-AGGC |UCAGU-GAG 7621 -A(ACA---- GAAA)UCUCA CGUAGA|GU( A|A--AAGG) GCAAAAG-CC U-GCUUGAUU 7681 -CUGAUUU(u c--aguaac- )uAAUCGGAA CUGG(-GAAA )CCAAGG|CC --UAU|CGA- 7741 UCCUUUA--- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- uguG-CUU(- -AAAU-C--U U---)----- ---------- 7861 -----AAG|C cUAGAG-GUG UC|aGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(CUCAU)AG CGACGCUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 UU|AUCA|UU G-UGAAG(CA -GA-)AUU~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~- ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~~ ~~~~~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (2)-Diplom 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS G.ardeae 9262 bp RNA RNA 11-JAN-191 DEFINITION Giardia ardeae. ACCESSION No information KEYWORDS No information. SOURCE Giardia ardeae. ORGANISM Giardia ardeae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X58290 Giardia ardeae, Harry van Keulen Sequence of G. ardeae; 1 - 10 3' end 18S 48 start 5.8 S 240 start "28S" 2924 end "28S" BASE COUNT 489 a 953 c 1041 g 343 t 6436 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~c augcagaccc agaccggcGG AUG|CCUGGG 61 |CUCGGGC|C U|-CGAGGAA GGA|CGCG(- -GCGG-AC)A |GC-GAGAug cggugc-|[- 121 -agcccggc- --ac------ gaa------- ---------- ---------- -------]-- 181 ---------- ---------- ---gcacc|G GUUUCC-GAA cgc-(-ucg- )-g-c|cucc 241 ---------- -(-------- ---------- ---------- -----cccg- ---)------ 301 ------ggag ---accggcc -g-cu-cggc ggg---(--- ---------/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------gac )--ucccccg agc-ggcc-g gGG----ACG 481 AC|GGGCGGG -A--CU|UA( AGCA)UA-UC AGUACG-C-C C-AGGAGG-- --AGACACC( 541 AAC-A)GG-G AU|UCCCG-- GU---AGC(G GCGA)GCG-A C-----GCGG GAGG------ 601 ---------- ---------- ---------- ---------- -AGCCCG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --------cc 781 ccgaag(ggc cg-)cugugg g--------- ---------- ---------- ---------- 841 --gcgugg-- ---------- ---------- ---------- ---------- ccgag-ccgg 901 ggggagaa-- --g-uga-g( g-(gggagc- )c)cuc-c-- ---------- --------GC 961 --|C(GGA)G |CGGG-(UGA GAGC)-CCCG UC|--uccc- --cgggcgcg ------ggcc 1021 acgc------ ---------- -ggg------ ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGCGCC GCU(----UG 1141 AGAG)UGCAG CGCGAA---- -cGGGA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUGAUGCC-- ---------- ---------- ---------- )CUU-CCAAG GCU----GAA 1381 UA-------- ---------- CCGGC-CCGA GACCGAUAGC GGACCAAGUA GU(GCGA)A- 1441 C-GAACGGUG -AAA-AGGAC GCC(cccgag )GGCC-GCUC --AAAAG-AC C-UGAAcc-c 1501 ggcug-gcg< ------cccc gagggcccag g--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- (gc-ga)ccu gg-ccgucgg >------GCC CGU(CUCGAA 2581 AC)ACGG|AC CGAGG-AGCC GCCCCCCGGC GCGAGUCa-g aggac----( -------ggg 2641 --)------- ---------- -----gucc- ---------- -uguGGCGGA GC(GACG)GC 2701 G-[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------A 2881 ---------- -------gau cc(-ccc-)g ga-------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- --gccc-(-- 3121 ugcg---)-- --gggcc--- ---------- -]-------- ---------- -GAGCGGCG- 3181 -GGG-GGCGG GCCCGAAAGG C-GGUG-AUC UACG-CCCG- GC|C-AGGGC GAAGCCAGGC 3241 (GAAA----- -----)GCCU GGU-GGAGGC CCG-CC---G CG-GUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU CCGAGCCGGG CGUGGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC GCCUGGUAGC UGGUUGCCUC CGAAAUUUCU --(CCCA)GG 3421 AUAGC-CGCC -ACC--c|-- -|-ggc---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 --agcuGCGG -C|CGG--UA GG-GC-CGCG ACCGGCGGG- -----AGCGG GGGA--(ccu 3721 g--)--UCCC U-CGU-|CCG CCCC-UCGAA CUCCG-AACG |GCCGCgc-c -ac-ggggc- 3781 c-gcuuggcu g--ggcgccg uggggc---- ---------- ---------- ---------- 3841 ---------- ---------- ----agug-c g|GG-UGGCG -UGU-GGGCC -UCU-CCUG( 3901 G-UAAG)CAG GAC-GGGC-G AGACGG(GA- UGAU)CCG-- GAAGCCG--- GGCCAGA--G 3961 U|GCGG-GAC --C--CA-GG CGgagc---- ---------- -----g---- -AAACGGCGU 4021 C--GGUCGGU CCUGACA-GC UGGAAGGUGG CC(CUAG-UA GUC)GGAAUC CU|C(CAA)G 4081 |GAGUGU(GU AACA)AC|-- -CCACCAGCC -GAAUCGACG GGC|CC-GGA AAA--UGGAA 4141 C--GCA-CG- CGAGCCUGG| G|-------- --ACUCAC-- --GCCCGGC| (- cgcg-)---- -uggc-GGGU AGGA------ 4441 --GGC|-CG- CG-GC-GC-- --------u- -c-g-ggu-- c------GAA GGCG------ 4501 G-GGG(GCGA -)CCCGCGC- UGG|A-ccg| g--GCGCCG- GUGC-AGA-U CUCGGU|AG- 4561 CAGUAGCCAC -UACUCCG-- -(ucacc--- ---------- ---------- ---------- 4621 --)--CGGAG |GCCUggg-u G-GAG|AAGG GUU|CCGUGG CG-CCC(-GG CGU)GG|ACC 4681 ACGGGUGACU |-CGG-CCCU AAGC------ -------<-g cguggu(--g ucg-)a-cca 4741 gag------- ------gacg uac(cccc-- -------)gu acg-cccg-- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA AGGGG-AA-C CGG(CGAAGA CU-)CCGGU| -AG----agc gc-agga-uc 4981 --[------- ---------- ---------- ---------- -g---ccg(- -gcga--)cg 5041 c--------- ---------- ---------- ---------- ------g-u] ccg-cccgag 5101 -cac-----g ugc--acggg cc-a-ggcg- -au-ggga(G CCGCCGCG-) ucccag-|cc 5161 cccgcucc-- ---------- ---|-cgcgu gccc-ccgag ----ac(cuu gc-)guggcg 5221 ccggg-gcac g--------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----ggag-c guc-----u- 5341 ---------( --------)- ---------c gccgc----g -gcccg--gu cacC-CCUGA 5401 AAC--cucgg g<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- -----cgg-- ---------- ------ggcg --ug-cug-- cg-cugCCGU 5581 A|CC-----C ACC(GCAGCA )GG|ACU-CC GAGGU(GAGC A)GCCUCU-| GGGC--||g- 5641 gg-a--gAGA CC-GUGA-CU C-AGGGAAGU CGGCAA-GUU -AGCUCCGUA AC(CUCG)GG 5701 AUAAGGAGU| GGCUCUGAU- ---------- --------<- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------c 6541 c(gcc--)gg a--------- ----->---- -------CUC AGAACU|G(- --GAA)CGGA 6601 CucGGGGAUC C|-CGACUGU CU(AAUAG)C AACACAGCGU CGUG|C--GA G|uc-(c--u 6661 gauc)-ga-- ---------- --U-GCGGAC ACGACGUG-- AUUUCUGCCC AGU|GCCACG 6721 AC-CGUCAC- ---cgugaa- ----(gagg) -----uucac ----CCAAGC C|CUGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCGG-G( 6841 UAAUU)UCCG AC|GUGCAUG AAUGGACCAA CGAGGAUCCC ACUGU-CCCG AGUCACGCcu 6901 cc|gcgaacc u|aca-gACC CG(GGAA-CG GG)CGGGUGC -C-GGU-CGG CGGGGCAAGA 6961 AGACCCUUUU G|AGCUUGAC UCC-|AGCCC G---GCC-CU |GGGGGGCGG GGUCACCGGC 7021 GCACGGUACA GGGGAG---- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -GCCG)---- 7141 ---------- C-GCCCAUGA GA-CACCCUG |ACGGUGAC- -CACCG-CCC CACUUAc--- 7201 ---------- ---------| --g GACAC-GGCC G-GGCG-GGG AG-UUUGGCU G(GGG)CGGC 7561 G-C|GCCUGC (UAGACAGCA CC-)GCAG-G C|G|U|CCC- ACGGC-GAGC |UCAGC-GAG 7621 -G(ACG---- GAAA)CCUCC CGUGGA|GC( A|G--AAGG) GCAAAAG-CU C-GCCCGACC 7681 -CGCGCCA(c c--agucc-- )cGGCGCGCg g-GC(-GAAA )GCGCGG|CC --UAC|CGA- 7741 UCCUUCGG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --cG-CUC(- -GGGC-A--U C---)----- ---------- 7861 -----GAG|C GCGGAG-gug aC|aGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCCGCCAAGC G(CCCGC)AG CGACGCGGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|ACCG|UC C-GCGCG(CA -UC-)GGCGC GGAA-GCGU| CGGAU(UGUU C)ACCCGcuc 8041 c-AGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUAUCCUACC GACC---<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->----c cg-gg-gc-G AGAGCACGGC GGGU(CAGUA 8281 C(GAGA)GGA AC-)GCCCGC C|GCGGGCCG CCGGu-cuCG CGG|-UUGCC C(GGCA)GGG 8341 CAGCGCCGCU C-CGCCGC-- GC-CCGg--G GGCCUAGCGC U(GAACGCCU C-U-A)AGCG 8401 CGCACCCC-g CCUCg----- gacc--ccgu c<-------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- --cgacgcc( 8641 ccacccuagc cccgcg-cac --cccg-c)g gcgucg---> --|------- ---------- 8701 ------ccgg |ccggg(-ua gacga)cc-c gccgc----- agc|gcuccu -gu-acgcgg 8761 cg-g-agc-- ------(ccc gcgcgacc-- ---------- ---------- ---------- 8821 ----)----- --gccugag- gaa|-cgccc -|-------- ----cu-gc- -cc-gcc-gc 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS G.intest.1 9262 bp RNA RNA 11-JAN-191 DEFINITION Giardia intestinalis. ACCESSION No information KEYWORDS No information. SOURCE Giardia intestinalis. ORGANISM Giardia intestinalis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X52949 ID GIRRNATR standard; DNA; INV; 5566 BP. AC X52949; DE Giardia intestinalis DNA for rRNA tandem repeat unit OC Eukaryota; Protozoa; Flagellata; Polymastigina. BASE COUNT 457 a 1111 c 1192 g 278 t 6224 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AACGCC CCGCCGGCGG AUG|CCUCGG 61 |CCCGGGC|G G|-CGACGAA GAG|CGCG(- -GCGG-AG)C |GC-GAGAcg cggugc-|[- 121 ggacccgcc- cgccccg--a gaa------- ---------- ---------- -------]-- 181 ---------- ---------- ---gcacc|G ACCCUC-GAA Cgc-(-agc- )-g-c|gc-- 241 ---------- -(-------- ---------- ---------- -----cccg- ---)------ 301 --------gc ---gccgccg -c-cu-cggc gccc--(--- ---------/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------gcg )--cggcccg agg-cggc-g gGG----GCG 481 AC|GGGCGGA -A--CU|UA( AGCA)UA-UC AGUACG-C-C C-CGGAGG-- --AGAAACC( 541 AAC-C)GG-G AU|UCCCC-- GU---AGC(G GCGA)GCG-A C-----GCGG GAgr------ 601 ---------- ---------- ---------- ---------- -AGCCCG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 --cccc(gaa ---)gg-cgc ---------- ---------- gcugug---- ---------- 841 gggcgcag-- ---------- ---------- ---------- ---------- gcgca-ggcc 901 cgccgcga-- --g-ggg-g( c-(ccgagg- )g)ccc-c-- ---------- --------GC 961 --|C(CGA)G |AGGG-(UGC AAGC)-CCCG UA|--cggc- --ggccgccg g-----gccu 1021 ---------- ------gc-g cggc------ ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGCGCU GCU(----UG 1141 AGCG)UGCAG CGCGAA---- --GGGA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GCGCGGCC-- ---------- ---------- ---------- )CUU-CCAAG GCU----AAA 1381 UA-------- ---------- -CGCC-CCGG GACCGAUAGC GGACCAAGUA GC(GCGA)G- 1441 C-VAACGGUG -AAA-AGGAC GCC(cu-gc- )GGCC-GCUC --AAAAG-AC C-UGAACC-C 1501 GGCCG-GCC< gc---cggcc ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- (cg-cc)--- --------gg >------CCC CGU(CUCGAA 2581 AC)ACGG|AC CGAGG-AGCC ACGCGCCGCG GCGAGCCc-g aggg-----( -------agc 2641 c-)------- ---------- ------ccc- ---------- --gcGGCGGA GC(GAGC)GC 2701 G-[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------A 2881 ----gacgcc ccgggcccgc cg(cgccc)c ugcgggcgug cgcgggcc-- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- -------(-- 3121 -------)-- ---------- ---------- -]-------- ---------- -GAGCCGCG- 3181 -GCG-CGUGG GCCCGAAAGG C-GGUG-AUC UAUG-CCCG- GC|G-AGGGC GAGGCCGGGC 3241 (GAAA----- -----)GCCU GGU-GGAGGC CCG-CC---G CG-GUGCUGA (CGCGCAGA) 3301 UCG-C-UCGU CGGAGCCGGG CAUGGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC GCCUGGUAGC UGGUUGCCUC CGAAAUGUCU --(CCCA)GG 3421 ACAGC-CGCC -GCC--c|-- -|-cgc---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 --aguuGCGG -C|CCG--UA GA-GC-GCUG GCCGGCGGG- -----AGCGG GGGG--(ccu 3721 g--)--CCCC U-CGC-|CCG CCCC-CCAAA CUCCG-AAGG |GCCGCgc-c -gc-cccgc- 3781 c-gcuggccu g--ggcgggg cgggcg---- ---------- ---------- ---------- 3841 ---------- ---------- ----AAUg-c g|GG-CGGCG -CGU-GGGCC -CCU-CCUG( 3901 G-UAAG)CAG GAC-GGGC-G AGGCGG(GA- CGAU)CCG-- GACGCCG--- GGCCAGG--G 3961 U|GCGC-CGC --C--GG-GG CCcgc----- ---------- -----g---- -GAACGGCGU 4021 C--GGCCGGU CCCGACA-GC UGGAAGGUGG CC(CCAG-AA GUC)GGCAUC CU|C(CAG)G 4081 |GAGUGU(GU AACA)AC|-- -CCACCAGCC -GAAUCGGCC GGC|CC-GGA AAA--UGGAG 4141 C--GCG-CC- GGAGCCCCG| G|-------- --ACCCGC-- --GCCCGGC| (- cgcg-)---- -cggc-GGGU AGGA------ 4441 --GGC|-CG- CA-GA-GG-- ------ccc- -c-g-gggg- c------GAA GGCG------ 4501 G-CGC(GCAG -)GCCCCGC- CGG|A-CCG| G--CCUCUG- GUGC-AGA-U CUCGGC|AG- 4561 CAGUAGCCGC -UACUCCG-- -(cgccc--- ---------- ---------- ---------- 4621 --)--CGGAG |GACUGAGGG G-GAG|ACGG GUU|CCGCGG CG-CCU(-GC AUC)UG|GCC 4681 GCGGGUGACU |-CGG-GCCU AAGC------ -------<-g gcgggu(--g aag-)a-ccg 4741 gga------- ------aggg gcg(ugcc-- -------)cg ccc-g----- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA cGGGG-AG-C CGG(CGGAGA CU-)CCGGC| -AG----gcg cg-gccc-cc 4981 --[------- ---------- ---------- ---------- -----gcg(- -gaga--)cg 5041 c--------- ---------- ---------- ---------- ------c-c] gcc-ccccgg 5101 cgac-----g cgc--acggg ga-c-cgcg- -gc-gggc(G GCGCCCCG-) gcccgc-|GA 5161 Acgcccc--- ---------- ---|-gcagc cccc-gga-c ----gc(cuu gc-)gcggag 5221 ag-gg-gggc ccg------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- -----ggg-g cgg-----ac 5341 cc-------( --------)- ---------c gc-gcg---u -ccccg--gc cgcC-CCUGA 5401 AAA-gccggg g<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- -----ggc-- ---------- ------gc-- --cg-gcc-- gc-gcgCCGU 5581 A|CC-----G ACC(GCAGCA )GG|ACU-CC GGGGU(CAGC A)GCCUCU-| AGCGc-||g- 5641 gg-a--gCGA AC-GCGG-CU C-AGGGAAGU CGGCAA-GCC -GGCUCCGUA AC(CUCG)GG 5701 AAAAGGAGU| GGCUCUGAC- ---------- --------<- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------g 6541 g(cgc-g)cc gg-------- ----->---- -------GUC AGAACU|G(- --GAA)CGGA 6601 CGCGGGGAUC C|-CGACUGU UU(ACUAG)A AACACAGCGU CGCG|A--GG G|CCG(---- 6661 cacc)CGG-- ---------- --C-GCUGGC GCGACGUG-- AUUUCUGCCC AGU|GCCACG 6721 AC-CGUCAC- ---cgugaa- ----(gcga) -----uccgc ----CGAAGC C|CUGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCGG-G( 6841 CAAUU)UCCG AC|GUGCAUG AAUGGACCAA CGAGGAUCCC ACUGU-CCCG AGCCGCgccu 6901 cc|g-gagcc u|cca-gCCU CG(GGAA-CG GG)CGAGGGC -C-GGC-CAG CGGGGCAAGA 6961 AGACCCUUUU G|AGCUUGAC UCC-|AGCCC G---GGC-CU |GUGGGGCGG GGCGGCCGGC 7021 GCAGCGCACA GGGGAG---- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -GCCG)---- 7141 ---------- C-GCCCCUGA GA-CACCCUG |ACGGCCGC- -CGCCG-CCC CGCUCAc--- 7201 ---------- ---------| --g GACCC-GCCC G-GGCG-GGG AG-UUCGGCU G(GGG)CGGC 7561 G-C|GCCUGC (UACACCGGA CC-)GCAG-G C|G|U|CCC- ACGGC-GGGC |UCAGC-GAG 7621 -G(ACG---- GAGA)CCUCC CGCGGA|GC( A|G--AAGG) GCACAAG-CC C-GCCCGACC 7681 -CGCGCCC(c c--cgugc-- )CGGCGCGGG CCGC(-GAAA )GCGGGG|CC --UAC|CGA- 7741 UCCUUCGC-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --cG-CCC(- -CGGC-C--G C---)----- ---------- 7861 -----GGG|C GCGGAG-gug gC|aGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCCGCCGAGC G(CCCGC)AG CGACGCGGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|ACCG|UC C-GCGCG(CA -CC-)GGCGC GGAA-GCGU| CGGAU(UGUU C)ACCCGuuc 8041 a-AGGGAUCG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GGCC---<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->----c cg-gg-gc-C AGAGCACGGC GGGC(CAGUA 8281 C(GAGA)GGA AC-)GCC-GC C|GCGGGCCG CCAGc-ccCG CGG|-UUGCC C(GGCC)GGG 8341 CAGCGCCGCG C-CGCCGC-- GC-CCGg--G GGCCCUGCGC U(GACCGCCU C-U-A)AGCG 8401 CGCACCCC-g CCUCg----- cgcc--ccgc c<-------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------c ggccgcgcg( 8641 ---ccccagc cccgug-ccc c-gucg-c)c gagcggccc> --|------- ---------- 8701 ------ccgc |ccggg(-ga gacca)cc-c ggcgc----- ggc|gcuccu -gu-acggcg 8761 ca-g-agc-- ------(ccu gc--gauc-- ---------- ---------- ---------- 8821 ----)----- --gccugag- gga|-cgcgc c|---ugcag a--gcg-cg- --g-ggc-gg 8881 ggcg-|---- ------|cgc ggcccacuug cu----cugg gggggugcgg ggcagacaga 8941 caggcagagc gcggaaagag aagauugagg gagugcaggg ugccccaagg gguggccagg 9001 gggcagugca cgcccaccac cgggucugcc uugcacagag agacgcccgu gugcgcaggg 9061 gggcggcgca ggaccgcagg gggcccgggg gaggcggccc ggggga~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS G.intest.2 9262 bp RNA RNA 06-JAN-1988 DEFINITION Giardia intestinalis. ACCESSION No information KEYWORDS No information. SOURCE Giardia intestinalis. ORGANISM Giardia intestinalis. REFERENCE 1 (bases 1 to 419) AUTHORS No information JOURNAL June 6, 1988 STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 9262) Corresponding GenBank entry: X05396 Y00331 This sequence is a compilation of Gen-Bank entries GLARRN58S and GLARRNALS LOCUS GLARRN58S 651 bp ds-DNA INV 15-MAR-1988 DEFINITION Giardia lamblia rDNA for 5.8S rRNA and part of LSRNA and SSRNA. ACCESSION X05396 Y00331 BASE COUNT 96 a 252 c 260 g 46 t 8608 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AACGCC CCGCCGGCGG AUG|CCUCGG 61 |CCCGGGC|G G|-CGACGAA GAG|CGCG(- -GCGG-AG)C |GC-GAGAcg cggugc-|[- 121 ggacccgcc- cgccccg--a gaa------- ---------- ---------- -------]-- 181 ---------- ---------- ---gcacc|G ACCCUC-GAA Cgc-(-agc- )-g-c|gc-- 241 ---------- -(-------- ---------- ---------- -----cccg- ---)------ 301 --------gc ---gccgccg -c-cu-cggc gcccg-(--- ---cc----/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --------cg )--cggcccg agg-cggc-g gGG----GCG 481 AC|GGGCGGA -A--CU|UA( AGCA)UA-UC AGUACG-C-C C-CGGAGG-- --AGAAACC( 541 AAC-C)GG-A AU|U...... ........(. ....)...-. .-----.... .......... 601 .......... .......... .......... .......... .......|-- --------.. 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .....---.. 841 ........-- ---------- ---------- ---------- ---------- .....-.... 901 .........- --.-...-.( .-(......- ).).....-- ---------- -.-.-..... 961 --|.(...). |....-(... ....)-.... ..|--..... .......... .-----.... 1021 .......... ........-. .......... ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|. ...-...... ...(..-... 1141 ....)..... ......---. ......-.(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- )...-..... ...----... 1381 ..-------- --------.. .....-.... .......... ....-..... ..(....).- 1441 .-........ ....-..... ...(.....- )....-.... .-........ .-........ 1501 .........< ..---..... .......... ........-. .......... .......... 1561 .........- .......... .....--... .......... .......... .......... 1621 .......... .......... ......-... .......... .......... .....-.... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... --........ 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... ...--..... 2221 .......... .........- .........- -......... .....-.... ..-....... 2281 .......... ....-..... ..-....... .......... .......... .......... 2341 ...-...... .........- .......... .......... .......... ---....... 2401 .-...-.... ....-..... --........ ....--.... .......... .......... 2461 .-........ .......... .....----- ----...... .----..... .......... 2521 ....-..... .......... ...-...... .......... >......... ...(...... 2581 ..)....|.. .....-.... .......... ........-. .....----( .....-.... 2641 ..)------- ---------- ---......- ---------- .......... ..(....).. 2701 .[.------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---....... .......... .......... .......... .......... .......... 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---....... .........- ---------- -------... .......... 3061 ...------- -----...-. .....----- -......... .......... ......-.-- 3121 -....-..-- --......-. ....-..... -]........ .......... .........- 3181 .......... .......... .-....-... ....-....- ..|.-..... .......... 3241 (....----- -----).... ...-...... ......---. .......... (........) 3301 ...--..... .......... .......--. .--------- ---------- ---(....-- 3361 --.).---.. ...-...... .......... .......... .......... --(....).. 3421 .....-.... -......|.. .|........ ........-. ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.|...--.. ..-....... .........- -......... ..GG--(ccu 3721 gcc)--CCUC G-CCC-|G-C GCCC-CCAAA CUCCG-AAGG |GCCGCcg-c -gccccgcc- 3781 -gcuggccug ggcggggc-g ggcg------ ---------- ---------- ---------- 3841 ---------- ---------- ----AAUg-c g|gg-cggcg -cGU-GGGCC -CCU-CCUG( 3901 G-UAAG)CAG GAC-GGGC-G AGGCGG(GA- CGAU)CCG-- GACGCCG--- GGCCAGG--G 3961 U|GCGC-CGC --C--GG-GG CCcgc----- ---------- -----g---- -GAACGGCGU 4021 C--GGCCGG- CCCGACA-GC UGGAAGGUGG CC(CCAG-AA GUC)GGCAUC CU|C(CAG)G 4081 |GAGUGU(GU AACA)AC|-- -CCACCAGCC -GAAUCGGCC GGC|CC-GGA AAA--UGGAG 4141 C--GCG-CC- GGAGCCCCG| G|-------- --ACCCGC-- --GCCCGGC| (- cgcg-)---- -cggcgGUUC GGGA------ 4441 --GGC|-CG- CA-GA-GG-- ------ccc- -c-g-gggg- c----g-cgA GGCG------ 4501 G-CGC(GCAG -)GCCCCGC- CGG|A-CCG| G--CCUCUG- GUGC-AGA-U CUCGGC|AG- 4561 CAGUAGCCGC -UACUCCG-- -(cgccc--- ---------- ---------- ---------- 4621 --)--CGGAG |GACUGAGGG G~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(-~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~---- ---------- --------~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~- -----~~~~~ ~~~~~~~~~~ ~~-----~-- -~---~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~----~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~-|-~~~ ~~~~~~~~-- ------~~~~ ---~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~~~~~~ 5281 ~~~~~~~~~- ---------- ---------- ---------- ---------- -~~----~~~ 5341 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ 5581 ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~~~~~~-~ ~~~~~~~~~~ ~~~--~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~-~~~ 5701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~-~~~~~~~~ ~-~~~~~~~~ ~-~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ -~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ---~~~~~~~ ~~~~~~~~~~ 6601 ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~-~~~~ ~~~~~~-~~~ ~~~~~~~--~ 6661 ~~~~~~|~~~ ~~|~~~~~~~ ~~~-~~~~-- ---------- -~~~~~~~~~ ~-~~~~-~~~ 6721 ~~-~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 6781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~(~-~ ~)~~~~~~~~ 6841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ 6901 ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~-~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~-~~~-~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~--~~- ~~~~~~~~~~ 7141 ~~~~~~~~~- ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ -~~~~~-~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~----~~~~ ~~-~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7561 ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~|~~~~~ 7621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~--~~~~~~ 7681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~------ ---------- ---~~~~~~~ 7741 ~~~~~~~~~~ ~~~|~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~- -~~~~~~~~~ ~~~-~~~~~~ ~~~~~-~~~~ 7861 ~~~~----|- ---------- -----~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~|~~~ 7921 ~|~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7981 ~~~~~~|~~~ ~~|~~~~~~~ ~~~-~~~|~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---- -------~~~ 8101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 8281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8401 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8701 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~---~~~ 8761 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~~~ 8881 --~~~|~~~~ ~~-~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS G.intest.3 9262 bp RNA RNA 31-DEC-1994 DEFINITION Giardia intestinalis.; . ACCESSION U09492 KEYWORDS . SOURCE Giardia intestinalis. ORGANISM Giardia intestinalis. REFERENCE 1 (bases 1 to 3818) AUTHORS van Keulen,H., Homan,W.l., Erlandsen,S.l., Shields,J.M. and Jarroll,E.L. TITLE spacer DNA sequences: evidence for two major subgroups of human Giardia Two types of Giardia lamblia small subunit ribosomal RNA and JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 3830) AUTHORS van Keulen,H. TITLE Direct Submission JOURNAL Submitted (09-MAY-1994) Harry van Keulen, Cleveland State University, Biology, 1983 East 24th Street, Cleveland, OH 44115, USA STANDARD full automatic COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U09492 NCBI gi: 606646 BASE COUNT 17 a 68 c 59 g 6 t 9112 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AGCCCC GCGCCGGCGG AUG|CCUCGG 61 |CCCGGGC|G G|-CGACGAA GAG|CGCG(- -GCGG-AG)C |GC-GAGAcg cggugc-|[- 121 ggacccgcc- cgccccg--a gaa------- ---------- ---------- -------]-- 181 ---------- ---------- ---gcacc|G GCCCUC-GAA Cgc-(-agc- )-g-c|gc-- 241 ---------- -(-------- ---------- ---------- -----cccg- ---)------ 301 --------gc ---gccgccg -c-cu-cggc gcccg-(--- ---ccgcgug ---------- 361 ---------- ---------- ---------- ---------- ---------- --ccgc~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~---~~~ 481 ~~|~~~~~~~ ~~--~~~~~~ ~~~~~~~-~~ ~~~~~~-~-~ ~~~~~~~~-- --~~~~~~~~ 541 ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~-----~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- --------~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ --~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~-~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~-- ---------- ---------- ---------- ---------~ ~~~~~-~~~~ 901 ~~~~~~~~~~ --~-~~~-~( ~-~~~~~~~~ ~~)~~~~~-- ---------- -~~~-~~~~~ 961 --~~~~~~~~ ~~~~~-~~~~ ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~-----~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~------- ~--------- ---------- 1081 ---------- ---------- ---------- --------~~ ~~~-~~~~~~ ~~~~~~-~~~ 1141 ~~~~~~~~~~ ~~~~~~---~ ~~~~~~-~~- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ~~~~~~~~-- ---------- ---------- ---------- ~~~~~~~~~~ ~~~----~~~ 1381 ~~-------- --------~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1441 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ --~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~--~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~- -~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~-~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~(~-~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~]~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 3361 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS G.muris 9262 bp RNA RNA 11-JAN-191 DEFINITION Giardia muris. ACCESSION No information KEYWORDS No information. SOURCE Giardia muris. ORGANISM Giardia muris. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X65063 Sequence of Giardia muris rDNA repeat. H. van Keulen small subunit: 2098 - 3527 5.8S: 3555 ~ 3676 large subunit:3733 - 6421 BASE COUNT 640 a 753 c 856 g 562 t 6451 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~u gagaugacgc gacccgguGG AUG|CCUUGG 61 |CUCGGGG|G A|-CGAUGAA GGA|CGUG(- -GCUG-AC)G |AC-GAUAcu cgaugu-|[- 121 gg-uccaa-- gcacgug--- ---------- ---------- ---------- -------]-- 181 ---------- ---------- ---acauc|G AUCUUC-GAA U---(----- )----|---- 241 ---------- -(-------- ---------- ---------- ---------- ---)------ 301 --------gg ---aucaucg -g-gg-uggu gg-------- ---------/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ------uccc )---ccccca cuc-cgau-g aAG----AUG 481 AC|GGGUGGA -A--CU|UA( AGCA)UA-UC AGUACG-C-C C-AGGAGA-- --AGACACC( 541 AAC-C)GG-G AU|UCCUUGA UU---AGC(G GCGA)GCG-A U-----CCAG GAGU------ 601 ---------- ---------- ---------- ---------- -AGUCCG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- -----accuc 781 gaagcg(aug ag-)cguugu ga-gg----- ---------- ---------- ---------- 841 acuggggg-- ---------- ---------- ---------- ---------- gaugu-ccua 901 aacccgaa-- --g-aug-g( g-(uugaaa- )c)cca-c-- ---------- --------AC 961 --|C(AAG)G |AGGG-(UGC CAGU)-CC-G UA|--gggau --ggacac-- -------aac 1021 cccaac---- ---------- -gac------ ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-ACCUCU GCU(----UG 1141 AGAG)-GUAG AGGGAA---- -gAGGA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUGGUACC-- ---------- ---------- ---------- )CUU-CUAAG GCU----AAA 1381 UA-------- ---------- CCGCC-CCGA GACCGAUAGA GGACCAAGUA GU(GCGA)A- 1441 C-GAAAGGUG -AGA-AGGAU GCC(gaccca )GGCA-cguC --AAAAG-AC CCUGAAcc-c 1501 gggag-gcg< -a----cucc cgaccugucg a--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- (-u-ga)ucg auuggucgg- >------GCC CGU(CUCGAA 2581 AC)ACGG|AC CGAGG-AGUU AGGACCGAUC GCGAGUC--- ---------( -------aug 2641 u-)------- ---------- ---------- ---------- ----GGCaaa gg(gaag)uc 2701 a-[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------A 2881 ---------- -------gac uu(-caa-)g gg-------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- --gccc-(cu 3121 -uaca-a)-- --gggca--- ---------- -]-------- ---------- -GAGCGAUC- 3181 -GGU-CCUAG ACCCGAAAGG U-GGUG-AUC UACA-CUUG- AC|C-AGGGU GAAGCCAGAC 3241 (GAAA----- -----)GCCU GGU-GGAGGC CCA-UC---C CG-GUGCUGA (CGUGCAAA) 3301 UCG-C-UCGG UCGAGUUGAG UGUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUGGUAGC UGGUUACCUC CGAAAUGUCU --(CCCA)GG 3421 AUAGC-CGAC -AUC--a|-- -|-ugaac-- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 --agcuGCCC -U|AGG--UA AG-GC-CACG AUCGGUGGG- -----AGUAG GGAG--(guc 3721 a--)--CUCC U-UAU-|CCA CCCC-UCGAA CCAUG-AACA |AGGGUg--g -agcggggc- 3781 c-aacuugug ug-ggccccc ucaac----- ---------- ---------- ---------- 3841 ---------- ---------- ----agug-u u|GA-UGUCG -AGU-GGGCC -UCU-CCUG( 3901 G-UAAG)CAG GAC-GGGC-A AGACGG(GA- UGAA)CCG-- ACAGUCG--- GGGGAAG--G 3961 U|GUGGaagU --G--UA-UG CUcgau---- ---------- -----c---- -AAACGGUGU 4021 C--CGUCGAU CGUGACA-GC UGGAAGGUGG CC(UUAA-CA GUA)GGAAGC CU|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -CCACCAGCC -GAAUCGAGG GGC|CC-GGA AAA--UGGAA 4141 C--ACG-CC- GAAGCAUAC| G|-------- --AUCGGA-- --ACCCGAC| (- ugug-)---- -ucuc-GGGU AGGA------ 4441 --GGU|-CG- UC-AU-GA-- --------u- -c-g-agu-- c------GAA GCCA------ 4501 U-GGG(GUGA -)CACGUGG- UGG|A-ucg| ag-UCAUGA- UUGC-UGA-U CUCGGU|AG- 4561 UAGUAGCCAU -UACUCC--- -(aucu---- ---------- ---------- ---------- 4621 --)---GGAG |GCCUGACGU G-GAG|AUGG GUU|CCGUAU CC-CUG(-UC GAU)CA|GAU 4681 ACGGGUGACA |-CGA-UCCU AAGU------ ---------- 4921 ----AC-GAU AGGGcugA-C CGG(UUAACA UC-)CCGGU| --G----gua ug-augg-gg 4981 --[------- ---------- ---------- -------u-- -c---uug(- -guga--)ca 5041 u--------- ---------- ---------- ---------- -----cc-u] uuc-acaacg 5101 guac-----a uga--acgaa gc-a-caug- -gu-ggga(G UCAUCCCG-) uccuac-|cc 5161 caguccccc- ---------- ---|---cau ggcc-aguag ---uac(uuc ag-)gucgug 5221 caugg-ccau g--------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----augg-a uca------- 5341 ---------( --------)- ---------c au--gu---c -cuucg--gu cauC-CAUGA 5401 AAC-ccguug u<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- -------g-- ---------- ----uccccc --cc-auc-- cu-ga-UCGU 5581 A|CC---ACA ACC(GCAACA )GG|ACU-CC AAGGU(GAUC A)GCCUCU-| AGGC--||g- 5641 gg-a--gAGA CC-AUGA-CU C-AGGGAAGU CGGCAA-ACU -AGCUCCGUA AC(CUCG)GG 5701 AGAAGGAGU| GGCUCUGA-- ---------- --------<- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 -(ucg-a)-- ---------- ----->---- --------UC AGAACC|G(- --GCA)CGGA 6601 CcgAGGGAUC C|gCGACUGU CU(ACUAA)C AACAUAGCGU CGUG|C-CAG U|CGU(---c 6661 augg)AUG-- ---------- --A-GCGUAC ACGACGUG-- AUUUCUGCCC AGU|GCCAUG 6721 AC-CGUCAC- ---caugaa- ----(gagg) -----uucau ----CCAAGC C|CUGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCGG-G( 6841 UAAUU)UCCG AC|GUGCAUG AAUGGAUCAA CGAGGAUCCC ACUGU-CCCA AGUCAUGCCU 6901 CC|guGAACC U|aca-gACC CG(GGAA-CG GG)CGGGUGU -U-GGU-CGG CGGGGCAAGA 6961 AGACCCUUUU G|AGCUUGAC UCC-|AAUCC G---AUC-CU |GGGGGAUGG GAUCAUCGGU 7021 GCAGCAUACA GGGGAG---- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -GCCG)---- 7141 ---------- C-UUCCAUGA GA-UACCCUG |ACGUUGUU- -CACCA-UCC CACUCAc--- 7201 ---------- ---------| --g CACAC-GGUC G-GAUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 G-C|GCCUGC (UAGAUCACA CG-)GCAG-G C|G|U|CCU- AUGGU-AAGC |UCAGU-GAG 7621 -G(UCG---- GAAA)CCUCA CGUGGA|GC( A|U--AAGG) GCAUAAG-CU U-ACUUGACU 7681 -AGUACC-(c c--ugucc-- )-GGUACUUG CCGU(-GAAA )GCGUGG|CC --UAA|CGA- 7741 UCCUUCA--- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- accG-CUC(- -CGGU-AauC C---)----- ---------- 7861 -----GAG|C gUGGAG-gug aC|aGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCCGCCAAGC G(CCCAU)AG CGACGUGGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|ACCG|UC C-GCAUG(CA -UC-)GGUGC GGAA-GCGU| CGGAU(UGUU C)ACCCGucu 8041 a-AGGGAUCG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUAUCCUACC GACC---<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->aucuc ca-ug-cg-U CCAGUACGUC GGGU(CAGUA 8281 C(GAGA)GGA AC-)ACCCGU C|GCGAGCCU CCGAu-cuCC CGG|-UUGUU U(GACU)UGA 8341 CAGUGCCGGU C-UGUCGC-- GC-UCGg--G GGACUAGCAC U(GAACGCCU C-U-A)AGUG 8401 UCCAUCCC-a CCUAc----- ucgc--augg g<-------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- -uugagggg( 8641 ---------- cuu------- --------)c cccucga--> --|------- ---------- 8701 -----uucgc |ccggg(-uu gacga)cc-c uuuuc---uc cga|ccuacu -gu-acggcg 8761 ug-g-agc-- ------(uuc uugcgacc-- ---------- ---------- ---------- 8821 ----)----- --gccugag- guu|-ugguu c|-ggguugg c--auu-cc- -cc-ccg-ag 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS D.tigrina 9262 bp RNA RNA 03-DEC-1996 DEFINITION Dugesia (Girardia) tigrina.; . ACCESSION U78718 KEYWORDS . SOURCE Dugesia (Girardia) tigrina. ORGANISM Dugesia (Girardia) tigrina. REFERENCE 1 (bases 1 to 3387) AUTHORS Shimmin,L.C. and Tran,H.N. TITLE Characterization of the ribosomal RNA operon of the planarian Dugesia tigrina JOURNAL Unpublished (1996) STANDARD No information REFERENCE 2 (bases 1 to 3387) AUTHORS Shimmin,L.C. and Austin,D.J. TITLE Direct Submission JOURNAL Submitted (17-NOV-1996) Human Genetics Center, University of Texas Houston Health Science Center, 6901 Bertner Room S 250, Houston, TX 77030, USA STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U78718 BASE COUNT 925 a 611 c 904 g 947 t 5875 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~--~~|~~( ~~~~)~~-UC AUUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-A)AGGG AU|UUCCAUG GU---AGU(G GCGA)ACG-A C-----CUGG AAAA------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -----gcacc g--aauccu- 781 -gugcc(uuu ---)g-guac u--aggaauu gugguguaa- agguu-gugu cuuua---uu 841 g--------- ---------- ---------- ---------- ---------- guuga-gugu 901 acucc-aa-- --a-uuc-a( c-(uugauu- )g)uga-u-- ---------- -aa---agUC 961 --|C(AUA)G |AGGG-(UGU UAGA)-CCCG UG|--ggagu augcgaggcu u-----uua- 1021 ---------- uugacgc--u uccuau---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGAUU GCU(----UG 1141 AGAA)UGCAG UCCAAA---- UCGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAACUC-- ---------- ---------- ---------- )CAU-CUAAG GCU----AAA 1381 UA-------- ---------- CUUGU-GUGA GUCCGAUAGC AAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGUUG -AAA-AGAAC UUU(GA-AG- )AGAG-AGUU A-AAUAGUAC G-UGAAAU-C 1501 GCUUA-GAG< gu---aaacg agugg-agcc gaagcuggug uauggaauuc aguuguuugu 1561 auuuuauucg gauuuggaua caaauuuuuu ugaaagugcc cggauucgau uuuuuacuuu 1621 uacaaucaau gcacuuucca uacaccaaaa cugcgaccaa uagaacgguu ucucugucgu 1681 uuggggaagc ugaccaguuc uucggaaucg guuguauagc ccugagcacg guugaaucca 1741 uguauuggua uuggcgauuu gcaaauuuug auugauuauc gauguuggug guucggauuc 1801 gagcucuuuc cgagaucggg uuugauu--- uguugauguc guagauuauc aaaguguaaa 1861 uccaaagucu gcagugu--- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- -------aua 2521 uguagguu-- --------a- ---------- --ccuacuug >------UCC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUU UUAUAUGAUC GCGAGUCa-a agggc----( --uuuacgaa 2641 a-)------- ---------- -----cccc- ---------- --acGGCGAA AU(UAAU)GU 2701 A-[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---aagguuc au(uucg-)g ugagcu---- ------guga ugugaccuug 2941 u--------- ---------- ---------- ---------- ---------- ---------c 3001 cgg------( ----uuuuc- ----)----- -------ccg gacgagugca acauc----- 3061 ---------- ---------- ---------- ---------- ------aacc cgucugaagg 3121 ug-(u-ucg- -)-caucu-- -ggg-cggag u]-------- ---------U UGAGCGAUC- 3181 -GUG-UAAAG ACCCGAAAGA U-GGUG-AAC UAUG-CUUG- UG|C-AGGUU GAAGUCAGAG 3241 (GAAA----- -----)CUCU GAU-GGAGGA CCG-CC---G CG-GUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU CGGACAUGAG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCUUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGC -GUUU--|-- -|-augau-- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- -------ucc 3661 guaguUGAAC -C|AGG--UA AA-GCGAAUG AUUAGAAGU- -----auugg gggc--(gaa 3721 au-)--gcuc u-caa-|CUU AUUC-UCAAA CUUUA-AAUG |GGUUCGAag -ug-cgccu- 3781 cucuuuaaua uuuuuguugg agguguacau ---------- ---------- ---------- 3841 ---------- ---------- --cgAAUA-c A|AA-UGCCU -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGUGG(GA- UGAA)CCA-- AACAUCC--- GGUUAAG--G 3961 U|GCCU-AAC A-U--CA-CG CUCAU-ga-- --------ga aaccac---- -AAAAGGUGU 4021 U--GGUUGAU AAAGACA-GC AGGACGGUGG AC(AUGG-AA GUC)GUCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACA AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- GUAGCGUGG| G|-------- --ACCUAU-- --ACCGGAU| (- -----)-acg auacc-gUGU AGGA------ 4441 --AGG|-UG- CU-GU-GA-- --------U- -U-G-CCA-- A------GAA GCAU------ 4501 U-AGC(GUGA -)GUUGGUG- UGG|A-GCG| G--UCACGG- GUAC-AGA-U CUUGGU|AG- 4561 UAGUAGCAAU -UAUUCAAG- u(gagau--- ---------- ---------- ---------- 4621 --)CCUUGAA |GACUGAAGU G-GAG|AAGG GUU|CCAUGU GA-ACA(-GU AUU)UG|AAC 4681 AUGGGUUAGU |-CGG-UCCU AAGC------ -(----)<-- --gaucu-gg uaauuc-agu 4741 uaucagaagg aggugauuga caaguaaaa- -------uug ucugauuuuu uuuu-aguag 4801 ccuccugaa- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----GC-GAA AGGGA-AU-C AGG(UUAACA UU-)CCUGA| -AC----uug a--------- 4981 --[auacgga aauuugguua uuucgguaac acaag----- -----gug(- -guaa--)ca 5041 c--------- ---------- ---------- ---------a ag-------] cga-ucucag 5101 agac-----g uca--ucaag ug-u-uucg- -gg-aaga(g uucucuuu-) ucu-uu-|gu 5161 auacauac-- ---------- ---|------ ---caugucc ----cu(aga auc)ag-g-- 5221 -uuaucu--- ---------g gagaaaggga ugu------- ---------- ---------- 5281 ---------- ---------- ---------- --------g- ----aaau-g uca-----aa 5341 agcaccgcg( -guucu--)u gugguguc-c gaag-----c -gccccuggu ggcc-cuuga 5401 aaa-ucugag -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- --ggagca-- ---------- ----guuaua aauuucgu-u uc-aagCCGU 5581 A|CC--GAUA UCC(GCAGCA )GG|UCU-CC AAGGU(GAGC A)GCCUAU-| AGUCU-||-- 5641 UA-G--AACA AU-GUAG-GU A-AGGGAAGU CGGCAA-AUU -AGAUCCGUA CC(UUCG)GU 5701 AAAAGGAUU| GGCUCU---A GG-------- -(-----)---- ----CCU--- AGAACU|G(- --GCA)UGGA 6601 CUAGAGGAAU C|-CGACUGU CU(AAUUA)A AACAAAGCAU UGCG|a--ug g|CUG(---g 6661 ugaa)CGG-- ---------- --C-UUUGAC GCAAUGUG-- AUUUCUGCCC AGU|GCCAUG 6721 AA-UGUCAA- ---ugugaa- ----(gaaa) -----uucaa ----UCAAGC G|CUGGUUAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UCA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GUGCAUG AAUGGAUUAA CGAGAUUCCU ACUGU-CCCU AUCUACUAUC 6901 UA|GCGAAAC U|aca-gCCA AG(GGAA-CG GG)CUUGGAA -U-GUA-UAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCC G---ACU-UU |GUGAGGAAA CAUUAAAGGU 7021 GUAGUAUAAG UGGGAGAC-- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -UUCG)---- 7141 --------GU C-AGCAAUGA AA-UACCACU |ACUUUGAU- -CGUUU-CUU UACUAAC--- 7201 ---------- ---------| -- ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Tre.agilis 9262 bp RNA RNA 11-SEP-1997 DEFINITION Trepomonas agilis.; . ACCESSION AF015455 KEYWORDS . SOURCE Trepomonas agilis. ORGANISM Trepomonas agilis. REFERENCE 1 (bases 1 to 4294) AUTHORS Morin,L. TITLE of the nucleotide signatures in relation to other diplomonads, Microsporidia and trichomonads The phylogeny of basal eukaryotes: I. The ribosomal cluster of the free-living diplomonad Trepomonas agilis: secondary structure of the 18S, 5.8S, and 28S molecules, and analysis JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 4294) AUTHORS Morin,L. TITLE Direct Submission JOURNAL Submitted (22-JUL-1997) Biologie cellulaire 4, Universite Paris-Sud, Orsay 91305, France STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF015455 BASE COUNT 769 a 538 c 695 g 688 t 6572 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~aaa auuaucaUGA GUAUCAGUGG AUC|CCUAGG 61 |CACAGAU|A U|-CGACGAA GAG|CGUU(- -AAUC-AA)A |GC-GAAUuu u-guug-|[- 121 cuaucaauc- uuagcuuaau gcga------ ---------- ---------- ----a--]-- 181 ---------- ---------- ---uaguc|A AUACUC-GAA Uacu(-uca- )gg-c|auuu 241 au-------- -(-------- ---------- ---------- -----gcac- ---)------ 301 ---a-ugugu u--ucagcgu -u-------- ------(------GCC CGU(CUUGAA 2581 AC)ACGG|AU UAAGG-AGUU ACUUUACAUU GCGAGCCa-a cacgu----( -------gau 2641 aa)------- ---------- ---g-cgug- ---------- --agggcgua GA(GAAA)UC 2701 U-[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------G 2881 ----auuuau ucaauca--- --ugccgcua uagggaga(u uua)ucgaac uauagucuca 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- -]-------- ---------- -UAGUAAUG- 3181 -UGA-UGUAA ACCCGAAAGG U-AGUG-AUC UUUA-UCUA- GC|UgAUACC GAAGCCGGUC 3241 (GAAA----- -----)GGUU GGU-GGAAGG UAG-CC---G CA-GUACUGA (CGUGCAAA) 3301 UCG-U-UUGU CGGAGCCGGA UAAAGGGucG uc-------- ---------- --c(GAAA-- 3361 --G)A---CU CAU-CGAACU AC--aGUAGC UGGUUACGUU CGAAAUUUCU --(CUCA)GG 3421 AUAGC-AACA -ACA--A|-- -|-uannnnn ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ------GCAG -C|-gg--ua GA-GAGAAUG AUUGGUAGA- -----uagug gaac--(cua 3721 ---)--guuc u-gca-|CUA ACUC-UCAAA CUCCG-AAUA |GCUGUga-a -cauugguac 3781 uaccgcaaga gua-gcuauu guc------- ---------- ---------- ---------- 3841 ---------- ---------- ----gagcaa U|CG-UUGUU -AGU-GGGCC -ACU-CUGG( 3901 G-UAAG)CCG GAU-UGGC-A AGGAGG(AU- UCAG)CCU-- UAAGUCA--- GGUUACG--G 3961 U|GCGC-AAC --A--AA-GG Cgcau-ga-- ---------- --gacu---- -AAACGACGU 4021 A--UGUUGAU GUUGACA-GC AGGAAGGUGG CC(AUAA-AA GUC)GGAAGC CU|C(UUA)G 4081 |GAGUGU(GU UACU)AC|-- -UCACUUGCC -GAAUCAAUA UGC|UC-GGA AAA--UGGAU 4141 C--GCG-CU- ACAGCCUUU| G|-------- --ACCUAC-- --ACCUGAC| (u cuugu)-guu gUGCU-AGGU AGAA------ 4441 --CGU|-GG- UG-GA-GA-- --------G- -C-G-CUU-- U------GAA GCCU------ 4501 U-UGC(GUGA -)CGUCAGG- UGG|A-gca| c--UCUCUA- AGUC-CAG-U CUUAAU|UG- 4561 AAGUAGUGCU -UAGUCCA-- -(acua---- ---------- ---------- ---------- 4621 --)--UGAAC |CACUUACC- G-GAG|AAGG UUU|CCAAGG CC-ACU(-AA AU-)AG|UCC 4681 UUGGGUUACU |-CGG-UCCU AAGc------ -------<-g uu-acu(--g aac-)g-cca 4741 cuuaaacg-- ---------- ---(------ -------)-- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----uC-GAA AGGGA-AG-U AGG(UUAAAA UU-)CCUAC| aAG----gcu ca-caua--- 4981 --[------- ---------- ---------- ---------- -u---gcg(- -gcga--)cg 5041 cg-------- ---------- ---------- ---------- ---------] --ugugcuuc 5101 ucau-----u ga----guuc cg-aucggu- aucccugg(G CUUUCGUC-) ccaguc-|ug 5161 a-uguaaucu cuaguugcga agcaguagag ucuu-uc--a ----gc(gua uc-)gcu-a- 5221 gagaa-gaca guaua----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- --------ca 5341 ggaaggcag( -uguauu-)c ugcuuguu-g aaccaguu-u -ggaac---- ucgcuaaaaa 5401 aug-ggaauc g<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ---------- ---------- ------cgcu a-au-ugu-- ga-gcaCCGU 5581 A|CUaaguaa ACC(GCAUCA )GG|UCU-CC AGGUU(AAGC -)AACCuca| AGUG--||A- 5641 GA-A--GAUA GC-GUGA-GC G-UGGGAACU CGGCAA-AAU -AGCUAUGAA AG(UUAG)CG 5701 AAAAAUAGU| GGCUCUGAA- ---------- --------<- cguucgucca agggca---- 5761 ---------- ---------- ---------a aaucauagaa gaugug---u gagagcgcug 5821 guggagca-a sus-uuugcg cu-ggaacuu cg-------- ---------- --gaagggug 5881 gagaucu--- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------g -cgggcaaac aucau>---- -------uuu agaac-|G(- --CUU)CCAG 6601 CUAGGAGAAU C|-CGACUGU AU(AAUUA)A AACAUAGUUA AUGG|A--CU G|uca----- 6661 cugc-agg-- ---------- --U-GCAGUU CAUUGUUG-- AAUCCUGCCC AGU|GCUAUG 6721 AC-UGUUAA- ---aaucga- ----(gaga) -----uugau ----UUAAGC U|CUGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUU|U (UAA)GGUAG CCAAAUGCCU C|GUCCA-G( 6841 UAAUU)UUGG AC|GUGCAUG AAUGGAUUAA UGGGGUUCUC ACUGU-CCUC GCUCACAUCU 6901 UC|GCGAAAC C|aca-gACU CG(GGAA-CG GG)CGAGUgc uacUCU-CAG CGGGGCAAGA 6961 AGACCCUGUU G|AGCUUGAC UCC-|AGCUU U---GGAACU |GUAGAACGG UGAUGGUGGU 7021 AUAGCGUACA GGGgaga--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -uucg)---- 7141 ---------u c-aacaaugu aa-caCCCUG |ACACUAUU- -CAUUG-UUC UGCUAAc--- 7201 ---------- ---------| --g -ACAC-UUCU A-GGUG-GGG AG-UUUGUCU G(GG-)CGGA 7561 GaC|GCCUGC (UAAAGUUUA AC-)GCAG-G A|G|U|CCA- AUAGU-AAGC |UCAGU-AUA 7621 -U(UCA---- GAAA)UUAUA CGUAGA|GC( A|A--AAGA) GUAAAAG-CU U-AUCUGACU 7681 -GAGUUCA(u c--agugg-- )UGAACUCAG ACGU(-GAAA )GCGUGG|UC --UAU|CGA- 7741 UCCUUUAc-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -aua-ugc(- -AUGU-A--A U---)----- ---------- 7861 -----GCA|U CUAGAG-gug aC|aGA--AA AGUnnnnn|n nnn|nnnnnn nn|nnnnnnn 7921 nnnnnnnnnn n(nnnnn)nn nnnnnnnnnn nnnnnnnnnn nnnnnnnn|n nn-n|n|nnn 7981 nn|nnnn|nn n-nnnnn(nn -nn-)nnnnn nnnn-nnnn| nnnnn(nnnn n)nnnnnnnn 8041 n-nnnnnnnn nnnnnnnnnn nnnnnnn--- ---------n nn(nnnn)nn nnnnnnnnnn 8101 nnnnnnnnnn nnnn---<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->-nnnn nn-nn-nn-n nnnnnnnnnn nnnn(nnnnn 8281 n(nnnn)nnn nn-)nnnnnn n|nnnnnnnn nnnnnnnnnn nnn|-nnnnn n(nnnn)nnn 8341 nnnnnnnnnn n-nnnnnnn- nn-nnnn--n nnnnnnnnnn n(nnnnnnnn n-n-n)nnnn 8401 nnnnnnnn-n nnnnn----- nnnn--nnnn n<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~)~ ~~~~~~~~~> ~~|~~~~~~~ ~~~~~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (2)-Entamo 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS E.histol.1 9262 bp RNA RNA 11-JAN-191 DEFINITION Entamoeba histolytica. ACCESSION No information KEYWORDS No information. SOURCE Entamoeba histolytica. ORGANISM Entamoeba histolytica. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X65163 ID EHRRNA standard; RNA; INV; 6331 BP. XX AC X65163; XX DT 25-APR-1993 (Rel. 35, Created) DT 25-APR-1993 (Rel. 35, Last updated, Version 2) XX DE E.histolytica rRNA XX KW 18S ribosomal RNA; 28S ribosomal RNA; 5.8S ribosomal RNA; KW ribosomal RNA. XX OS Entamoeba histolytica OC Eukaryota; Animalia; Protozoa; Sarcomastigophora; Sarcodina; OC Rhizopoda; Lobosa; Gymnamoeba; Schizopyrenida; Tubulina; OC Entamoebidae. XX RN [1] RP 1-6331 RA Bhattacharya S.; RT ; RL Submitted (17-MAR-1992) on tape to the EMBL Data Library by: RL S. Bhattacharya, Jawaharlal Nehru University, School of RL Enviromental Sciences, New Dehli, 110067, INDIA XX RN [2] RP 1-6331 RA Ramachandran S., Bhattacharya A., Bhattacharya S.; RT "Nucleotide sequence analysis of the rRNA transcription unit of a RT pathogenic Entamoeba histolytica strain HM-EIMSS"; RL Nucleic Acids Res. 21:2011-2011(1993). XX FH Key Location/Qualifiers FH FT source 1..6331 FT /organism="Entamoeba histolytica" FT /strain="HM 1-IMSS" FT /dev_stage="trophozoites" FT /clone="p(ssrnag),pHM-a,pLSrnaE1,plsrnaE2,plsrnaE3" FT /isolate="Clone-6" FT rRNA 522..2467 FT /product="18S ribosomal RNA" FT misc_feature 2468..2590 FT /note="transcribed spacer sequence 1" FT rRNA 2591..2740 FT /product="5.8S ribosomal RNA" FT misc_feature 2741..2865 FT /note="transcribed spacer sequence 2" FT rRNA 2866..6331 FT /product="28S ribosomal RNA" XX SQ Sequence 6331 BP; 2415 A; 813 C; 1302 G; 1792 T; 9 other; BASE COUNT 1355 a 480 c 744 g 1036 t 5647 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~AAAU AUUACUUUGG AUA|GUUUAG 61 |UUUCCUG|G G|-CGAUGAA GAA|CGCA(- -AUGA-AU)U |GC-GAUAAG UG-auag|[- 121 gaacaauaaa a---ugugaa ---------- ---------- ---------- -------]-- 181 ---------- ---------- ---uaucc|A AAAUUU-GAA Ugcu(ugaa- )ag-u|auac 241 uua-----ug a(-------- ---------- ---------- -----acu-- ---)uc---- 301 --aa-gguau ---auaugau -a-uu-caau auc---(--- -----c---/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- )---gauuug agu-aucg-u aAG----AGG 481 AC|UCCCUUA -A--CU|UA( AGCA)UA-UC AAUAAG-G-G A-AGGAAG-- --AAAAAAU( 541 AAC-A)AU-G AU|UUCUUAA GU---AAU(G GCGA)AUG-A A-----AAAG AAAA------ 601 ---------- ---------- ---------- ---------- -AGACCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---aguugau aagaauggau --aauuguaa a--aggguua gaagaauaca (gcaa)ugua 781 ugaggcuagu cu-uaaauua uu-cagagug uaacuaau-- agaaaagcua uauuu----- 841 --aaaagg-- ---------- ---------- ---------- ---------- gauaa-uuua 901 aauu-gaa-- --u-uca-g( a-(acgaau- )a)uug-a-- ---------- --------GC 961 --|C(AGA)G |AGAG-(UGA AAGC)-CUCG UC|--aauuu agauauaucu u-----gaaa 1021 agaau----- -augguuu-a gaaaa----- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-Aaauuu auU(----UG 1141 GAAG)Uauaa aucGAA---- -aaGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 AUaguauu-- ---------- ---------- ---------- )CAU-CAAAG UCU----AAA 1381 UA-------- ---------- UUACA-GGAA AACUGAUAGC AAAG-AAGUA CU(GUGA)A- 1441 G-GAAAACUU -AAA-AGAAC UUU(gg-aa- )AAAG-AGUG --AAAAGAGC U-UGAAAG-A 1501 GUAAU-AUG< ug---aacgg auaauuuaua agaaaaau-a guggaa---- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- -uauguuaua aauaaagaug ugaaaagauu agauauauau aag--uagua 2221 uauuuaauaa gauuauguu- gaaauuuau- -aauauaaga aauuauuaag agcaa-gaga 2281 auuauuucau uuauagugau ua-uuaauaa acgaggauau uagga(gaaa -)ucuuagua 2341 uucaauugug aauuaaaa-- ----guaaaa auccgauaau aau-ggaaug ---auaaaag 2401 c-uauuuaag guaa-gauua --auaaauuu aaucc----- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---cgagaau 2521 agaa-acu-- --------cu uga-agaa-g uaaauuaucu >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUGGAU GCGAAUGa-g aauagc---( ------agga 2641 aa)------- ---------- ---g-cuau- ---------- --aacauGAA GA(GAAA)AC 2701 kA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ------aaaa cuauga--ga gugua----- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----gaaa-- ----)----- ---------- --ua-cauuu -agcaauagu 3061 a--------- ---------- ---------- ---------- -------ucu ---------u 3121 ucaau----- ---------- -------a-g a]-------- ---------A GAAGUAAAU- 3181 -AUG-UUAGG ACCCGAAAGA U-GGUG-AAC UAUA-CUUG- AA|C-GGAUU GAAGCCGAAG 3241 (-AAA----- -----)CUUU GGU-GGAAGA UUC-AC---G CA-GUGUUAA (CGUGCAAA) 3301 UUA-C-UUGU CAUAUUUGAG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACU AUCUAGUAGC UGGUUCCACC UGAAUAUUCC --(CUUA)GG 3421 AAGGU-CAAA -GUA--u|-- -|-uaa---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------u 3661 --aguAUUGA -U|UGG--UA AA-GAUAAUG AUUAGGUGU- -----AAUGG GUGA--(gua 3721 uau)--UCAC U-CAA-|CAU CUUG-UCAAA CUAUG-AAUA |AACAAAgaa -gaauucuc- 3781 aguguuaaau acacuucagg aauuuaaaua ---------- ---------- ---------- 3841 ---------- ---------- ----uaaac- a|UA-CUUUG -AAU-CGGCC -AAG-UCUG( 3901 G-UAAG)CAG GAC-UGGC-G AUGCGG(GA- UGAA)CCG-- AACGUCG--- AGAUAAA--G 3961 U|GCCA-AAA --A--GA-AA CAUAA-cg-- --------ag uaccac---- -AAAAGGUAU 4021 U--CAUUCAU AUUGACA-AU AGGACGGUGG CC(AUGG-AA GUC)GGAAAC CG|C(UAA)G 4081 |GAAUGU(GU AACA)AC|-- -UCACCUAUC -GAAUGAAUG AGU|CC-UGA AAA--UGGAU 4141 G--GCA-UU- AUAAUUUCU| U|-------- -aACUGAU-- --ACUCGAC| (- -----)cauu uuaac-gAGU AAGGaaacga 4441 aaUGG|-CG- UA-AG-GA-- -ca---acaa aA-G-Uag-- u------AAA GAUU------ 4501 U-AAA(GUAA -)UUUAGAU- UGA|A-ACU| G--UCCUUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UACUAAGA- A(gaggaaaa aaac------ ---------- ---------- 4621 --)AUCUUAG |AACUGAAGA G-GAG|AAAG GUU|CCUAAA CA-ACA(-UU ACU)UG|GAU 4681 UAGGGUGAAU |-CGA-UCCU AAau------ -------<-u acagau(-gg aa)auc-cuu 4741 a---agaaa- --uauauaag ugac------ ---------- (auaua---) guca-auaua 4801 agg------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----auuGAA AGGGA-AU-A AGA(UUAAUA GU-)UCUUA| -AU----caa ga-gaau-ua 4981 au[gauua-- ---------- ---------- aa-----u-- -c---uua(- -gaaa--)ua 5041 agauu----- --aaaucgaa ua----aaau g(guaa)cau a----uc-a] uga-acuuua 5101 aaau-----g gag--uguga aaau-cuac- -GG-AAGA(G UUCUCUUU-) UCUUCU-|UA 5161 A-caaaag-- --------ua aau|u---cc acug--aaau ----ga(auc aa-)ucaga- 5221 ga-ag-ugg- aauuu----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- -----auug- ----gcuu-u gUA-----AG 5341 aaAUUCAAC( -auaug--)A UUGAAUu--g ugguau---u -uuugc--ag ucuu-cauaA 5401 AAA-uuaaag -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 --ggaaucuu agcauaaagc uaau------ ----uaaaga --au-ucu-- uu-ugCUCGU 5581 A|CU--AAUA ACC(GCAACA )GG|UCU-CC AAGAA(GCAA A)AUCUUU-| AGUUA-||Aa 5641 UA-G--AAUA AC-GCAG-GU A-AGGGAAGU CGGCAA-CAU -AGCUCUGUA AG(UUAG)CA 5701 AGAAAGAGU| AGCUCUGGU- ---------- -(-----)---- -------AUC AGAACU|U(- ---UA)AAGG 6601 UUAGGGGAAU C|-CGACUGU UU(AAUAA)A AACAUAGCAU UCUG|A--UA A|AUC(---u 6661 aaaa)GGU-- ---------- --U-CAUUAC AGAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---gguaau- ----(gaaa) -----uuuac ----UUAAGC G|CGGGUUAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUCAC CGUGAUUCCC ACUGU-CCCU AUCUGCAAUC 6901 UA|GUGAAAC C|aca-gUCA AG(GGAA-CG GG)CUUGAUU -G-GAA-CGG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AAUUU A---UCA--U |GUGAAAUCG AUUUUUUGGU 7021 AUAGGCUAGG UGGGAGAc-- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- --uuu)---- 7141 --------gu c-AAACGUGU AA-UACCACC |ACUAGAAA- -UacUA-UUU CACUCAu--- 7201 ---------- ---------| --u GAAAG-AGAU A-GACG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UACAAGAUA AC-)GCAG-G U|G|U|CCA- AAGAU-GAAC |UCAAU-GAG 7621 -G(ACA---- GAAA)CCUCA UGUAGA|AU( A|U--AAGG) GUAUAAG-UU C-AUUUGAUU 7681 -AUUGAUU(c c--aguac-- )AAUCAAUAA CUCU(-GAAA )UGAUGG|CC --UAA|CGA- 7741 UCCCUAAGau uuuuaauuag aaagaauuua aaacauauua gauuuaucug augugugaga 7801 ccguaaggug auuucuaguu aauc-cuu(- -uaau-a--a u---)----- ---------- 7861 -----aag|g CUUGGG-GUG UC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(CUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCC|AU U-UCAAG(CA -GA-)AUUGA AAAA-AGGU| AUGAU(UGUU C)ACCAUUUA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACC GUUUC-g-aaag ua-uu-ua-G AUAGUAGCAC AACU(CAGUA 8281 C(GAGA)GGA AC-)CGUUGU G|UCACGCCA CUGGAUUAUU CAA|-UUAUU U(GAUC)AAA 8341 UAGUGUUGAG A-AUCUAAC- AC-GUGU-uG AAAUAAUGGC U(GAAAGCCU CUC-A)AGCC 8401 AGAAUUUC-G UCUA-----g auga--auac u<---uuguc uuuuuc-u-u guuacuuuag 8461 uacaauugaa -aauuauaua cguuguauuu auuaucucgu gu-------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---auuacuc uaucaaaagg guagugaa-- 8641 ------uacu gaguua-aca a--------- aauuuaaag> --|------( ---)------ 8701 cauaacuguu |gcuua(-ua gacga)ug-g cauc-----a gaa|aucggu g---uwguaa 8761 gc-u-unnnn nn-nn----- ---------- -----nnn-n nnn--nnnnn ---------- 8821 -------nnn nnnnnnnnnn -nn|n-nnnn -|----nnnn n--nn--nn- nnn-nnnnnn 8881 n----|---- ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS E.histol.2 9262 bp RNA RNA 15-SEP-1989 DEFINITION Entamoeba histolytica. str. HM-1:IMSS; 25S ribosomal RNA; ribosomal RNA. ACCESSION M21126 J04003 KEYWORDS 25S ribosomal RNA; ribosomal RNA. SOURCE Entamoeba histolytica. str. HM-1:IMSS. ORGANISM Entamoeba histolytica. REFERENCE 1 (bases 1 to 273) AUTHORS Huber,M., Koller,B., Gitler,C., Mirelman,D., Revel,M., Rozenblatt,S. and Garfinkel,L. TITLE Entamoeba histolytica ribosomal RNA genes are carried on palindromic circular DNA molecules JOURNAL Mol. Biochem. Parasitol. 32, 285-296 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: M21126 Draft entry and computer readable copy of sequence [1] kindly provided by M.Huber (10-24-88). NCBI gi: 158981 BASE COUNT 94 a 40 c 62 g 77 t 8989 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~G ACCCGAAAGA U-GGUG-AAC UAUA-CUUG- AA|C-GGAUU GAAGCCGAAG 3241 (GAAA----- -----)CUUU GGU-GGAAGA UUC-AC---G CA-GUGUUAA (CGUGCAAA) 3301 UUA-C-UUGU CAUAUUUGAG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACU AUCUAGUAGC UGGUUCCACC UGAAUAUUCC --(CUUA)GG 3421 AAGGU-CAAA -GUA---|-- -|uuaa---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------u 3661 --aguAUUGA -U|UGG--UA AA-GAUAAUG AUUAGGUGU- -----AAUGG GUGA--(gua 3721 uau)--UCAC U-CAA-|CAU CUUG-UCAAA CUAUG-AAUA |AACAAAgaa -gaauuc~~- 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ---------~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~-~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ 3901 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~~--~ 3961 ~~~~~~~~~~ ~-~~-~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---- ~~~~~~~~~~ 4021 ~--~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~-~~~ ~~~--~~~~~ 4141 ~~~~~~-~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~-- -~~~~~~~~~ ~~~~~~~~-~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|-~~~ ~~~~~~~~-- -~~~~~~~~~ ~~-~~~~~~~ ~----~-~~~ ~~~~----~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ -~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~-~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~---- ---------- --------~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~-~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~- -----~~~~~ ~~~~~~~~~~ ~~-----~-- -~---~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 5101 ~~~~----~~ ~~~-~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-|~~ 5161 ~~~~~~~~~- ------~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ---~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ---------- ---------- ---------- 5281 ---------- ---------- -------~~~ ~~~~~~~~~- ----~~~~~~ ~~~-----~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~--~~ ~~~~-~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~-~~~~~~~ 5581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 5641 ~~~~--~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ -~~~~~~~~~ ~~~~~~~~~~ 5701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 5821 ~~~~~~~~-~ ~~~-~~~~~~ ~~-~~~~~~~ ~~-------- ---------- ---~~~~~~~ 5881 ~~-~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~---~>~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~-~~~ ~|~~~~~--~ 6661 ~~~~~~~~-- ---------- --~-~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 6721 ~~-~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6841 ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~-~~~-~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~-|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~--~~- -~~~~~~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ -~~~~~-~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7561 ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~--~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~|~~~- 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~-~~~~ ~~~-~----- ---------- 7861 -----~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ 7981 ~~~~~~~|~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 8281 ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 8701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~- ~~~|-~~~~~ ~|~~~~~~~~ ~--~~~-~~~ ~~~-~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (2)-Euglen 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS C.fascic.1 9262 bp RNA RNA ~?~???? DEFINITION Crithidia fasciculata. ACCESSION No information KEYWORDS No information. SOURCE Crithidia fasciculata. ORGANISM Crithidia fasciculata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: Y00055 BASE COUNT 1043 a 934 c 1146 g 957 t 5182 others ORIGIN 1 |--------- ---------- ---------- -----AACGU GUCGCGAUGG AUG|ACUUGG 61 |CUUCCUA|U C|uCGUUGAA GAA|CGCA(- -GUAA-AG)U |GC-GAUAAG UGguau-|[- 121 caauugcaga a-ucauucaa u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---uaccg|A AUCUUU-GAA CGC-(aaacg )-g-c|gcau 241 gggagaagcu c(-------- ---------- ---------- -----uuuu- ---)gaguca 301 uccc-cgugc ---augccau -a-uu-cuca guguc-(--- ---gaac--/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------aca )--gac-cug agu-gugg-c aGG----ACU 481 AC|CCGCCGA -A--CU|UA( AGCA)UA-UU ACUCAG-C-G G-AGGAAA-- --AGAAAAC( 541 AAC-C)GU-G AU|UCUCUCA GU--gAGC(G GCGA)GCG-A A-----GAGG GAAa------ 601 ------g--- ---------- ---------- ---------- -AACUCG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----uugcc gaaucggguc ---(uuacaa )---ggccuu gaguuguggc aaugauauca 781 ---------u uu-cgugguu gg-ugcagga auggcgaaau ucaagcgcaa agcaaa--cc 841 cguugcug-- ---------- ---------- ---------- ---------- aa-------u 901 a----caacc cuu-c-a-u( g-(-ugag-- )u)auuga-- ---------- --------GC 961 --|C(AAA)G |AAGG-(UGU UAGC)-CCAU UG|------- ---agccaua ------aacc 1021 ugagcgccuc a---ugaa-c uguauuaaga ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGCACU GUU(----UG 1141 GGAA)UGCAG UGUCAA---G UUGGCA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAUUUGU-- ---------- ---------- ---------- )CUG-CUAAA GUU----AAA 1381 UA-------- --------CA GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUUU GAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-AAUAGAAC C-UGAAGU-C 1501 GUGACAACG< ac---aaugg aaguaccucc a--uuucg-u ------uuuu gccagaacca 1561 gcccuacu-- -------gca u--uaucucg ucgga(cguc aaac-)ucc- ggcgggcaac 1621 g---aagugc aagaacaaac au-ugggugu uggug----- aaaugggcgg aguauauggg 1681 cugugcacgg c-(gcaa--- ----)-gccg cgagcacggu uucuucucu- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------gug au-ucuc--- caugcuggcg 2521 -cag------ ---------- aaa-aug--- gggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCAAGGGa-g aagaua---( u-ggu-ugcc 2641 ag)------- ---------- ---u-acuu- ---------- --cuCUCGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcaaaau -gcaucugu- ggugugcaca cgucaaaucc guuuga---- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -------uuu gcccaacacc ga-cc----- 3121 --ggc-ccuc cgug------ -gg--uugcg u]-------- ---------U GGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CCCA GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU AUGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACAU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUa--|-- -|-gua---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------g 3661 a-aguAUUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGA- -----CUUGG UGUU--(cuu 3721 a-g)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAAAcaa -accguacc- 3781 uuagccaacu ---------- ----gcaagg u---cggaaa gaaaag---- ---------- 3841 ---------- ---------- ----AAUuag a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGG--- AUAUGUG--G 3961 C|GUCA-AAA C-uuaUG-GG CUCAUucu-- ------cgau acguga---- -AAAGGGUGU 4021 U--GGUGGAU AUGGACA-GU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GGC|CC-CGA AAA--UGGAU 4141 G--ACG-CU- UAAGCCCAA| U|-ua-guga uuGCCCAU-- --UAUUCCU| (- -----)gccc uuccg-aUGU AGAU------ 4441 --GUG|GC-C UG-GA-GG-- --------u- -c-A-GGa-- c------GAA GCUU------ 4501 AuGGC(GUGA -)GCCUAAGa UGG|A-CCG| G--CCUCUA- GUGC-AGA-U CUUGGU|UG- 4561 GCGUAGCAAA -GAUCUAAC- G(gaga---- ---------- ---uau---a cucaacaugc 4621 aa)CGUUGGA |UACUGGAGC G-GGG|AAGG AUU|UCGUGC CA-ACG(-GC ACU)CG|UAC 4681 ACGAGUUGUU |-CGGaaacu gagc------ --------------- ---------- ---------- --------cc --ca-acu-- gc-agaCCGU 5581 A|CU--CAUC ACC(GCAUCA )GG|UCC-CC AAGCA(UAGA A)UGCUCU-| GGUAC-||A- 5641 UA-G--AGAA AG-GUACaCU C-AGGGAAGU CGGCAA-AAU -AGAUGCGUA AG(UUCG)CA 5701 AGAAGCAUU| GGCUCUGAG- ---------- -(-----)---- -------CUC AGAACU|G(- ----c)uuac 6601 ggcGGGGAAU C|-CAACUGU AU(AAUUA)A AACAUAGGUU UGUG|A--UG C|AUC(---c 6661 aagu)GGU-- ---------- --G-UAUGUC GCAAACUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---cgugac- ----(gaga) -----uucac ----CGACGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCUU-C( 6841 CAAUU)AGAG AC|GCGCAUG AAUGGAUUAA UGAGAUUCCC UCUGU-CCCG AGUUACUAUC 6901 UA|GCGAAAC G|ACA-GUCA AG(GGAA-CG GA)CUUGAAG -G-GCU-AAG CGGGGAAAGA 6961 AGACCCUGUU G|AGUUUGAC UCC-|AGUCU G---GCU-CU |GUACGGCGA CAUCUGAGGU 7021 GUAGUAUAGG UGGAAGC--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -GCGA)---- 7141 ---------G C-ACAAAUGA AA-UACCACC |ACUCGGAA- -CGUUG-CUU UACUUAu--- 7201 ------(--- --)------| --a GACAucUGCC A-GAUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-U|AUCUGU (UACACGACA AC-)GCAG-G U|G|U|CCU- AAGGC-GAGC |UCAGU-GGG 7621 -A(ACA---- GAAA)UCUCA CGUAGA|AC( A|C--AAGC) GUAAAAG-CU U-GCUUGAUU 7681 aACGAUUU(c c--aguac-- )GAAUCGAGA CUGC(-GAAA )GCAAG-|GC --CAG|CGA- 7741 UCCUUUGc-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- gaagaauagg aaau-aug(- -aACA-A--A U---)----- ---------- 7861 -----cau|a cCAGAG-gug uC|AGA--AU AAUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCGGCCAAGC G(UUCAU)AG CGACGUCGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AACC|UA G-CGCCG(CA -GA-)AGACG CUAA-GGGU| UGGAU(UGUU C)ACCCACUG 8041 ACAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUGGUU 8101 UUACCCUACU UAGCU-ggcaGG CA-UC-gu-G AGGGAAGUAU GGGG(UAGUA 8281 C(GAGA)GGA AC-)UCCCAU G|CCGUGCCU CUAGUUUCUG GGG|-UUUGU C(GAAC)GGC 8341 AAGUGCCCCG A-AGCCAUC- GC-ACGG--U GGUUCUCGGC U(GAACGCCU C-U-A)AGCC 8401 AGAAGCCA-A UCCC-aa-ga ccaG--AUGC C --|------( ---)------ 8701 -acaacgucc |cucuc(-ca aacga)ga-g aauau----g cau|gggcug gcaugagc-- 8761 -g-g-caugc uu-ca----- -cuccggugg ggcucgag(g ggca)cuu-a cgucccgagg 8821 cgc---ugaa ----ccuug- agg|-ccuga -|--aauuuc a--u-g-cuc ug----g-ga 8881 cuaaa|---- ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS C.fascic.2 9262 bp RNA RNA 30-SEP-1988 DEFINITION Crithidia fasciculata.; 28S ribosomal RNA. ACCESSION M19223 J03648 KEYWORDS 28S ribosomal RNA. SOURCE Crithidia fasciculata. ORGANISM Crithidia fasciculata. REFERENCE 1 (bases 1 to 409) AUTHORS Baroin,A., Perasso,R., Qu,L.-H., Brugerolle,G., Bachellerie,J .-P.P. and Adoutte,A. TITLE Partial phylogeny of the unicellular eukaryotes based on rapid sequencing of a portion of 28S ribosomal RNA JOURNAL Proc. Natl. Acad. Sci. U.S.A. 85, 3474-3478 (1988) STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: M19223 Draft entry and printed copy of sequence for [1] kindly provided by A.Baroin, 26-APR-1988. NCBI gi: 176247 BASE COUNT 121 a 84 c 113 g 90 t 8854 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~nca )--gac-cug agu-gugg-c agg----ACU 481 AC|CCGCCGA -A--CU|UA( AGCA)UA-UU ACUCAG-C-G G-AGGAAA-- --AGAAAAC( 541 AAC-C)GU-G AU|UCUCUCA GU--gAGC(G GCGA)GCG-A A-----GAGG GAAa------ 601 ------g--- ---------- ---------- ---------- -AACUCG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----uugcc gaaucggguc ---(uuacaa )---ggccuu gaguuguggc aaugauaucc 781 ---------u uu-cgugguu gg-ugcagga auggcgaaau ucaagcgcaa agcaaa--cc 841 cguugcug-- ---------- ---------- ---------- ---------- aa-------u 901 a----caacc cuu-c-a-u( c-(-guga-- )u)auuga-- ---------- --------GC 961 --|C(CAA)G |AAGG-(UGU UAGC)-CCAU UG|------- ---agccaua ------aacc 1021 ugagcgccuc c---ugaa-c uguauucaga ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGCACU GUU(----UG 1141 GGAA)UGCAG UGUCAA---G UUGGCA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAUUUGU-- ---------- ---------- ---------- )CUG-CUAAA GUU----AAA 1381 UA-------- --------CA GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGU~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~]~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 3361 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.vivax 9262 bp RNA RNA 26-OCT-1995 DEFINITION Trypanosoma vivax.; . ACCESSION U22316 KEYWORDS . SOURCE Trypanosoma vivax. ORGANISM Trypanosoma vivax. REFERENCE 1 (bases 1 to 4645) AUTHORS Urakawa,T. and Majiwa,P.A. TITLE inferred from the sequences of ribosomal RNA genes Phylogenetic relationships among Salivarian trypanosomes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 4645) AUTHORS Urakawa,T. TITLE Direct Submission JOURNAL Submitted (06-MAR-1995) Toyohiko Urakawa, Molecular Biology, International Livestock Research Institute (ILRI), Naivasha Road, Nairobi, Kenya STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U22316 NCBI gi: 1040857 BASE COUNT 458 a 650 c 671 g 350 t 7133 others ORIGIN 1 |--------- ---------- ---------- -----AACGU GUCGCGAUGG AUG|ACUUGG 61 |CUUCCCG|G U|uCGUUGAA GAA|CGCA(- -GCAA-AG)C |GC-GAUAGU ugguau-|[- 121 gaccugcaga a-ccacucga u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---uaccc|A GUCUUU-GAA CGC-(aaacg )-g-c|gcau 241 gggagcagcc c(-------- ---------- ---------- -----cccg- ---)ggguca 301 uccc-cgugc ---augccgc -a--gucuca guguc-(--- ---ga----/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------aca )--gac-cug agu-gcgg-c agg----ACC 481 AC|CCGCCAA -A--CU|UA( AGCA)UA-UU ACUCAG-C-G G-AGGAAA-- --AGAAAAC( 541 AAC-C)GU-G AU|UCCCUCA GU--cAGC(G GCGA)GCG-A A-----CAGG GAca------ 601 ------c--- ---------- ---------- ---------- -AACUCG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----cugcc gaaucgcgcc ---(ucaag- )---ggcgcc gaccuguggc acgcaacgcg 781 gcgcac-gg- --------cu gg-cagcggc gcggcgcaau ucaagcgcaa agcaaa--cg 841 cguugcug-- ---------- ---------- ---------- ---------- -------gcc 901 a----caccc cuu-c-a-u( g-(-ugag-- )u)auuga-- ---------- --------GC 961 --|C(AGG)G |AAGG-(UGA GAGC)-CCAC UG|-caccgc cgccccccgc c-----gcca 1021 ccgcgcgccg cccacc---- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGCACU GCU(----UG 1141 GGAG)UGCAG UGUCAA---G C-GGCA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAUUUGC-- ---------- ---------- ---------- )CUG-CCAAG GUU----AAA 1381 CA-------- --------CA GAGCG-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUUU GAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-CAUAGAAC C-UGAAAU-C 1501 GCGACAACG< ac---aaugg aagcgccucc c--ucaca-c cggccagccc cgcgccccca 1561 ccucauccuc ugugccagcc acuccgcgcg gggcagcauc cgcgcggcag cggcacaccc 1621 ggggcgcggg cgagccugcg gagcgugggg cgcgucgaca cgcggcgugc ccgcucc--- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------gcg cccucuc--- ggcgcuggcg 2521 -acg------ ---------- gcg-acgg-- -ggcgccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCaagggc-a gaggc----( a-cgc-cuca 2641 g-)------- ---------- -gcc-ucuc- ---------- --cgcccGCA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -acgcgcucc -gcguccgu- ggcgcgcgca c--------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ------gcgu gcucagcgcc gg-cc----- 3121 --ggc-cccc cgcg------ -gg--cugcg c]-------- ---------U CGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGC GAAGCCCGGG 3241 (GAAA----- -----)CCCG GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU ACGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACGU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUc--|-- -|-gccg--- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------ug 3661 a-aguACUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGC- -----aUUGG UGUU--(cuu 3721 g-c)--AGCA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAGCgcg cgcgcccuuc 3781 gc--ccgcc- ---------- ------gcaa gg--gcgcgc cucggccgag ---------- 3841 ---------- ---------- ----uuauug g|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCC-- GUUAGGG--- AUAUGUG--G 3961 C|GUCC-AAG C-uuccG-GG CUCAUucu-- ------cgau acguaa---- -aaAGGGUGU 4021 U--GGUGGAU AGGGACAUGU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GGC|CC-CCA AAA--UGGAU 4141 G--ACG-CU- CAAGcccga| c|-ac-gcga ugGCCCAU-- --UAUUCCU| (- -----)gccc cucca-aUGU AGAC------ 4441 --GUG|GC-G UG-GG-GG-- --------u- -cag-g-c-- c------GAA GCCG------ 4501 AUGGC(GCGA -)GCCGCGg- UGC|A-ccg| G--CCCCCA- GUGC-AGA-U CUUGGU|UG- 4561 GCGUAGCAAU -GAUCCAAC- G(gcacgca- ---------- ---------- -cacgcacac 4621 aa)CGUUGGA |UGCUGGAGC G-GGG|AAGG AUU|UCGUGC CA-ACG(-GC ACU)CG|CAC 4681 ACGAGUUGUU |-CGGacaCU GAGC------ -------~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Leptomo.sp 9262 bp RNA RNA 11-JAN-191 DEFINITION Leptomonas.sp. ACCESSION No information KEYWORDS No information. SOURCE Leptomonas.sp. ORGANISM Leptomonas.sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L19409 LOCUS TRLRR24S 993 bp ss-rRNA RNA 12-JUN-1993 DEFINITION Leptomonas sp. 24S ribosomal RNA alpha subunit ACCESSION L19409 KEYWORDS 24S ribosomal RNA; 24S ribosomal RNA alpha-subunit. SOURCE Leptomonas sp. rRNA. ORGANISM Leptomonas sp. Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 993) AUTHORS Fernandes,A.S., Nelson,K. and Beverley,S.M. TITLE Molecular evolutionary comparisons suggest multiple origins of vertebrate parasitism in trypanosomatid protozoa JOURNAL Unpublished (1993) FEATURES Location/Qualifiers rRNA <1..>993 /product="24S ribosomal RNA alpha subunit" /gene="24S rRNA" /evidence="EXPERIMENTAL" source 1..993 /organism="Leptomonas sp." /sequenced_mol="rRNA" BASE COUNT 277 a 214 c 289 g 213 t ORIGIN BASE COUNT 277 a 214 c 289 g 213 t 8269 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~|~(~~~)~ |~~~~~(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~A GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUuu gAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-AAUAGAAC C-UGAAGU-C 1501 GUGACAAAG< ac---aaugg aa--guaccu ccauuuca-a cggccagaa- -ccaacccua 1561 cu-------- -------gca u--ua-ucua ccggg(gguc aaaa-)ucc- ggugggcaac 1621 g---aagugc aagaacaacc a--ugggucu uggug----- aaaugggcgg aguuauuggg 1681 cuaugcacgg c-(gcaa--- ----)-gccg cgagcauggu uucuucucc- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------gug au-gcuc--- cauguuggcg 2521 cau------- ---------- ggaaaug--- gggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCAAGGGa-g gagaua---( u-ggu-ugcc 2641 ag)------- ---------- ---u-acuu- ---------- --cuCUCGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcaaaau -gcaucugu- ggugugcaca cgucaaaucc guuuga---- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -------uuu gcccaacacc ga-cc----- 3121 --ggc-ccuc cgug------ -gg--uugcg u]-------- ---------U GGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CCCA GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU AUGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACAU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUa--|-- -|gua----- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------g 3661 a-aguAUUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGA- -----CUUGG UGUU--(cuu 3721 a-g)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAAAcaa -accguacc- 3781 uuagccaacu ---------- ----gcaagg u---cggaaa gaaaagaauu aa-------- 3841 ---------- ---------- ---------- a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(GA- UGAA)CCG-- CUUAGGG--- AUAUGUG--C 3961 G|GUCAAAAC u-ua-ug-gg cuCAUucu-- ------cgau acguga---- -AAAGGGUGU 4021 U--GGUGGAU AUGGACA-GU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GG~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS E.monterog 9262 bp RNA RNA 11-JAN-191 DEFINITION Endotrypanum monterogei. ACCESSION No information KEYWORDS No information. SOURCE Endotrypanum monterogei. ORGANISM Endotrypanum monterogei. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L19407 LOCUS ENORR24S 991 bp ss-rRNA RNA 10-JUN-1993 DEFINITION Endotrypanum monterogeii 24S ribosomal RNA alpha-subunit. ACCESSION L19407 KEYWORDS 24S ribosomal RNA; 24S ribosomal RNA alpha-subunit. SOURCE Endotrypanum monterogeii rRNA. ORGANISM Endotrypanum monterogeii Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 991) AUTHORS Fernandes,A.S., Nelson,K. and Beverley,S.M. TITLE Molecular evolutionary comparisons suggest multiple origins of vertebrate parasitism in trypanosomatid protozoa JOURNAL Unpublished (1993) FEATURES Location/Qualifiers rRNA <1..>991 /product="24S ribosomal RNA alpha subunit" /gene="24S rRNA" /evidence="EXPERIMENTAL" source 1..991 /organism="Endotrypanum monterogeii" /sequenced_mol="rRNA" BASE COUNT 274 a 215 c 288 g 214 t ORIGIN BASE COUNT 274 a 215 c 288 g 214 t 8271 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~|~(~~~)~ |~~~~~(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~A GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUuu gAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-AAUAGAAC C-UGAAGU-C 1501 GUGACAAAG< ac---aaugg aa--guaccu ccauuuca-a cggccagaa- -ccagcccua 1561 cu-------- -------gca u--uaucccg ucggg(gguc aaaa-)ucc- ggcgggcaac 1621 g---aagugc aaaaacuu-- ---ugggucu uggug----- aaaugggcgg aguauuugag 1681 cugugcacga c-(gcaa--- ----)-gucg caagcacggu uucuucucc- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------gug au-gcuccau guuggcgau- 2521 ---------- ---------- ggaaaug--- gggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCAAGGGa-g gagaua---( u-ggu-ugcc 2641 ag)------- ---------- ---u-acuu- ---------- --cuCUCGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcaaaau -gcaucuguu ggugugcaca cgucaaaucc guuuga---- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -------uuu gcccaacacc ga-cc----- 3121 --ggc-ccuc cgug------ -gg--uugcg u]-------- ---------U GGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CCCA GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU AUGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACAU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUa--|-- -|gua----- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------g 3661 a-aguAUUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGC- -----AUUGG UGUU--(cuu 3721 a-g)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAAAcaa -accgugcc- 3781 uuagccaacu ---------- ----gcaagg c---cggaaa gaaaagaauu ag-------- 3841 ---------- ---------- ---------- a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGG--- AUAUGUG--G 3961 C|GUCAAAAC u-ua-ug-gg cuCAUucu-- ------cgau acguga---- -AAAGGGUGU 4021 U--GGUGGAU AUGGACA-GU UGGACCGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GG~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS L.donovani 9262 bp RNA RNA 11-JAN-191 DEFINITION Leishmania donovani. ACCESSION No information KEYWORDS No information. SOURCE Leishmania donovani. ORGANISM Leishmania donovani. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L19408 LOCUS LEIRR24S 993 bp ss-rRNA RNA 11-JUN-1993 DEFINITION Leishmania donovani 24S ribosomal RNA alpha subunit. ACCESSION L19408 KEYWORDS 24S ribosomal RNA; 24S ribosomal RNA alpha-subunit. SOURCE Leishmania donovani (strain HU3) rRNA. ORGANISM Leishmania donovani Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 993) AUTHORS Fernandes,A.S., Nelson,K. and Beverley,S.M. TITLE Molecular evolutionary comparisons suggest multiple origins of vertebrate parasitism in trypanosomatid protozoa JOURNAL Unpublished (1993) FEATURES Location/Qualifiers rRNA <1..>993 /product="24S ribosomal RNA alpha subunit" /gene="24S rRNA" /evidence="EXPERIMENTAL" source 1..993 /organism="Leishmania donovani" /strain="HU3" /sequenced_mol="rRNA" BASE COUNT 273 a 213 c 293 g 214 t ORIGIN BASE COUNT 273 a 213 c 293 g 214 t 8269 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~|~(~~~)~ |~~~~~(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~A GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUuu gAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-AAUAGAAC C-UGAAGU-C 1501 GUGACAAAG< ac---aaugg aa--guaccu ccauuuca-a cggccagaa- -ccagcccua 1561 cu-------- -------gca u--uauccug ucggg(gguc aaaa-)ucc- ggcgggcaac 1621 g---aagugc aagaauuu-- ---ugggucu uggug----- aaaugagcgg aguauuugag 1681 cugugcacgg c-(gcaa--- ----)-gccg cacgcacggu uucuucucc- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------gug au-gcuc--- cauguuggcg 2521 -au------- ---------- ggaaaug--- gggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAgggAGUC AAACAGACGC GCAAGGGa-g gagaua---( u-ggu-ugcc 2641 ag)------- ---------- ---u-acuu- ---------- --cuCUCGUA CU(GGAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcaaaau -gcaucugu- ggugugcaca cgugaaaucc guuuga---- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -------uuu gcccaacacc ga-cc----- 3121 --ggc-ccuc cgug------ -gg--uugcg u]-------- ---------U GGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CCCA GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU AUGAUUUGGG AUUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACAU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUa--|-- -|gua----- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------g 3661 a-aguAUUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGC- -----AUUGG UGUU--(cuu 3721 a-g)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAAAcaa -accgugcc- 3781 uuagccaacu ---------- ----gcaagg c---cggaaa gaaaagaaau uag------- 3841 ---------- ---------- ---------- a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGGa-- AUAUGUG--G 3961 C|GUCAAAAC u-ua-ug-gg cuCAUucu-- ------cgau acguga---- -AAAGGGUGU 4021 U--GGUGGAU AUGGACA-GU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GG~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Phytomo.sp 9262 bp RNA RNA 11-JAN-191 DEFINITION Phytomonas sp.. ACCESSION No information KEYWORDS No information. SOURCE Phytomonas sp. ORGANISM Phytomonas sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L19410 LOCUS PMNRR24S 981 bp ss-rRNA RNA 12-JUN-1993 DEFINITION Phytomonas sp. 24S ribosomal RNA alpha subunit. ACCESSION L19410 KEYWORDS 24S ribosomal RNA; 24S ribosomal RNA alpha-subunit. SOURCE Phytomonas sp. rRNA. ORGANISM Phytomonas sp. Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 981) AUTHORS Fernandes,A.S., Nelson,K. and Beverley,S.M. TITLE Molecular evolutionary comparisons suggest multiple origins of vertebrate parasitism in trypanosomatid protozoa JOURNAL Unpublished (1993) FEATURES Location/Qualifiers rRNA <1..>981 /product="24S ribosomal RNA alpha subunit" /gene="24S rRNA" /evidence="EXPERIMENTAL" source 1..981 /organism="Phytomonas sp." /sequenced_mol="rRNA" BASE COUNT 278 a 205 c 282 g 216 t ORIGIN BASE COUNT 278 a 205 c 282 g 216 t 8281 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~|~(~~~)~ |~~~~~(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~A GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUuu gAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-CAUAGAAC C-UGAAAU-C 1501 GUGACAAUG< ac---aaugg aa--guaccu ccauuuca-a cggccaaaa- -ccaacuccc 1561 ua------ua gcaaac-gca u--uaucccg gcagg(guuc aaaa-)ucu- gcugggcacc 1621 uuu----ugc guugucca-- ---ggaguca uggug----- -aaugggcgg agagua-agg 1681 ucagcguuca ag(uucg--- ----)cuugg ---cguuggc cuucuuc--- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------gug au-------- cauguuggcg 2521 -au------- ---------- ggaaaug--- gggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCAAGGGa-g gagaaa---( uuuca-acug 2641 aa)------- ---------- ---a-ucuu- ---------- --cuCUCGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcgaacg -g-aucugu- ggugugcaca cguaaaa--- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- --------au gcccaacacc ga-cc----- 3121 --ggc-ccuc cgug------ -gg--uugag u]-------- ---------U GGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUggAAG UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CCCA GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU AUGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACAU CGAAGUUUCC --(CUCA)GG 3421 AUAGU-CGGU -GCUu--|-- -|gauacaa- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------g 3661 a-aguAUUGU -G|CUG--UA AA-GCAAAUG AUUAGAGGC- -----AUUGG UGUU--(cuu 3721 a-g)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAAAc-a aacug-ucc- 3781 uuagccaaau ---------- ----gcaagg a---uggaaa gaaaagaauu a--------- 3841 ---------- ---------- ---------- a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGG--- AUAUGUG--C 3961 G|GUCAAAAC u-ua-ug-gg cuCAUucu-- ------cgau acguga---- -AAAGGGUGU 4021 U--GGUGGAU AUGGACA-GU UGGGCGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GG~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS B.culicis 9262 bp RNA RNA 11-JAN-191 DEFINITION Blastocrithidia culicis. ACCESSION No information KEYWORDS No information. SOURCE Blastocrithidia culicis. ORGANISM Blastocrithidia culicis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L19404 LOCUS BLHRR24S 990 bp ss-rRNA RNA 10-JUN-1993 DEFINITION Blastocrithidia culicis 24S ribosomal alpha subunit RNA. ACCESSION L19404 KEYWORDS 24S ribosomal RNA; 24S ribosomal RNA alpha-subunit. SOURCE Blastocrithidia culicis rRNA. ORGANISM Blastocrithidia culicis Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 990) AUTHORS Fernandes,A.S., Nelson,K. and Beverley,S.M. TITLE Molecular evolutionary comparisons suggest multiple origins of vertebrate parasitism in trypanosomatid protozoa JOURNAL Unpublished (1993) FEATURES Location/Qualifiers rRNA <1..>990 /product="24S ribosomal RNA alpha subunit" /gene="24S rRNA" source 1..990 /organism="Blastocrithidia culicis" /sequenced_mol="rRNA" BASE COUNT 247 a 239 c 306 g 198 t ORIGIN BASE COUNT 247 a 239 c 306 g 198 t 8272 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~|~(~~~)~ |~~~~~(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~A GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGc)a- 1441 a-ggAAGUuu gAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-CAUAGAAC C-UGAAGU-C 1501 GUGACAAUG< ac---aaugg aaggcugccu ccauuuca-g cggccagaa- -ccagcccgc 1561 agc------- -------gca ugcuc-ccug gcggu(gcuc ucggc)aucg gccgggugaa 1621 caaucagugc gggucgcg-- ---cgggucu uggug----- aaaugggcgg agauuc--ag 1681 ggcgcg-gc- --(accagcg cg--)---gc g--cgcgcu- ---gcucc-- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------gug au-gcuc--- caugcuggcg 2521 -aug-gau-- --------c- ccaaaug--- gggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCAAGGGa-g gagcua---( u-ggu-ugcc 2641 ag)------- ---------- ---u-acuc- ---------- --uuCUCGcg CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -acgcgaa-g -gc-uc-gu- ggugugcaca uucuauguga ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -------uuu gcccaacacc ga-cc----- 3121 --ggc-ccuc cgug------ -gg--uugcg u]-------- ---------U GGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CCCA GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU AGGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACAU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUu--|-- -|gugacgac a--------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------c 3661 a-aguAUUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGC- -----AUUGG UGUU--(cuu 3721 a-c)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAAAcac -gccgcgcc- 3781 uuacccaucc a--------- ----ggaagg c---cgacga gaacagcauu a--------- 3841 ---------- ---------- ---------- a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAA-)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGG--- AUAUGUG--G 3961 C|GUCAAAAC u-ua-ug-gg cuCAUucu-- ------cgau acguga---- -AAAGGGUGU 4021 U--GGUGGAU A-GGACA-GU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GG~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS E.gracilis 9262 bp RNA RNA 11-JAN-191 DEFINITION Euglena gracilis. ACCESSION No information KEYWORDS No information. SOURCE Euglena gracilis. ORGANISM Euglena gracilis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X53361 BASE COUNT 876 a 1051 c 1244 g 881 t 5210 others ORIGIN 1 |--------- ---------- ---------- ------ACCU GUUGUGGUGG AUG|UCUUGG 61 |CCCAGGU|U C|-UGAGGAA GGA|CACA(- -gcagccu)U |GC-GAUACG UU-cggu|[- 121 gauacgcaga gucuugugau cugg------ ---------- ---------- ----aca]-- 181 ---------- ---------- --aaggaa|C AGCUUC-GAA Cgc-(aacug )-g-c|cagc 241 aagg-----g g(-------- ---------- ---------- -----uucc- c--)cc---- 301 -ccg-agcug ----ccugug -c-gc-cag- ------(--- --uguug--/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -----gugac )------cug gcg-caca-u gGA----AUG 481 AC|CCACCGA -A--CU|UA( AGCA)UA-UC ACUCAG-U-G G-AGGAAC-- --AGCAAGC( 541 AAC-C)UC-G AU|UGCUGCA GU---AAU(G GCGA)AUG-A A-----CGAG CAGG------ 601 ---------- ---------- ---------- ---------- --ACCCA|-- ---------c 661 ggcucuuccu gaaaaugggc uu//------ ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -----cucga ucggcuuucg 781 uugg--(aau ---)----cc ag-caaaccc ugu-gggcua uggagcaguu ggcug---ug 841 ucucggug-- ---------- ---------- ---------- ---------- cuucc-cagu 901 accaaGAA-- --g-agu-c( c-(uggaau- )g)gaccc-- ---------- --------AC 961 --|G(AAA)C |AGGG-(AGA CUGU)-CCCG UA|--uggcu gaaccgugug c-----uggg 1021 aucacuggga uguggcug-g cuguaucccc ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGAGUG GCU(----UG 1141 GGAC)UGCAG UUUGAA---- gaGUGA-C(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUGUAUCC-- ---------- ---------- ---------- )GUC-ACAAG GUG----GCA 1381 UA-------- ---------- CAGAC-CUGG GACCGAUAGU GCAC-AAGUA GA(GUGA)U- 1441 C-GAAGGAUG -CAA-AGAAC UCC(gc-ga- )AGAG-GGUU --AAAAGUCC C-UGAAGC-C 1501 GCAAC-AGG< au--cggugg ugugcagugc uguauc---- -//--ugacc aagcgucucu 1561 gggucagccc agggcuggcc accga--gcc ccugucuccg gacagggaug acuaucgugg 1621 cagccccgug guggcagcuc cgccug-cca ggaccuggag uuug---//- -ucgc-uggu 1681 gguugggcug gauucggggu gugcuuggcu gcaccggggg cugcaccguu cugacggugg 1741 uccccuugcu ggcugcaccg ucccccagcc ugaccccagu ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------gag aaauuggcag cagagcuugg 2461 caccccuccu ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ----ugcagu gcugcucucu >------GCC CGU(CUCGAA 2581 AC)ACGG|AC CAAGG-AGUC UAAGGAGCUU GCCAGUCg-g auggc----- ugauc-caaa 2641 ac-------- ---------- ---c-ucuu- ---------- cugaGGCGUG GU(GAAG)GC 2701 AA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---cuauccu uccagau-gg gg-------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----cuagu- ----)----- ---------- ------cucu --gcauggaa 3061 c--------- ---------- ---------- ---------- ------gacc gg-acccgaa 3121 gucc(--agu -)ggaca--g gguu-ucgag u]-------- ---------G CuuGCAAGG- 3181 -UCC-UUGGG ACCCGAAAGG U-GGUG-AAC UAUA-CCGU- UC|U-ACGGU GAAGCCAUGG 3241 (GAAA----- -----)CUGU GGU-GGAAGC CGG-UC---G CU-GUUCUGA (CGUGCAAA) 3301 UUGUG-UAGC CUGAGUGCGG CAUAGGG--G U--------- ---------- ---(GAAA-- 3361 --G)G---CC AAU-CGAGCC ACCUAGUAGC UGGUUCCCUU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGG -AUC--c|-- ---aaugaug caaagcuu-g ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- uaugug--ac 3661 u-gguUGCAU -C|CGG--UA AA-GCAACGC AUGAGAGGC- -caacccUGG GGAG--(ccc 3721 a-g)--CUCC U-CAA-|CCU AUCC-UCGAA CUGUG-AAUG |GGUGCGgac -aacccagg- 3781 caugcuucuu ugccacgaca ggaggcugug uaacagcagu -------ucu ---------c 3841 cccgucuucu gagcauguuc guugaacaau g|GA-UCCUA -CGU-GGACC -AUG-ACUG( 3901 G-UAAG)CAG UGC-UGGU-G AUGCGG(GG- UGCU)CCG-- AGAGCAG--- ACUUAca--g 3961 a|ucccgagu --G--CU-GG CUCAUacu-- ------caga ucccac---- -AAAGGAUGU 4021 U--GCUUACU ACGGAUA-GC AGGUCGGUGG CC(AUGA-AG GUU)GGAACC CG|C(UGA)G 4081 |GAAUGU(GU AACA)AC|-- -UCACCUGCC -GAAGUGCGC AGC|UC-CGA AAA--UGGAU 4141 G--GUG-CC- CAAGUCAGU| G|-------- ugucuCCCUU AcAGUCUGC| (- -----)-gca ucguu-gUGU AGAA------ 4441 -aGGG|-CA- UG-GA-CA-- --------a- -cag-cug-- a------ucg uGUU------ 4501 G-GGA(UUGA -)UCCCGGC- UUG|Aggcg| u--uGCCCA- GAGC-AGA-U CUUGGU|UG- 4561 UAGUAGCGAG -UACUCCAC- C(uggagagg a----gug(g caa)cacaac cccgcugugu 4621 gc)GGUUGAG |GACUGGAGU G-GAG|CAGG UUU|CCACAC CAaACA(-GC CGU)UG|AAU 4681 GUGGGUCAAC |-CGA-CCGU GAGC------ ---------- 4921 ----GC-AAG UGCGA-GC-A AGA(UUCUAC UG-)UCAUG| -GG----cua ga-ggu-ccc 4981 uu[cggguc- ---------- ---------- ---------- -g---gug(- -gcga--)ca 5041 cc-------- cc-caa-ggc ---------- ---------- -----ag-c] ccc-uccagg 5101 cauc-----g aac--cagug aa-u-cccc- -ug-ugga(G UUCUCGUU-) uccucc-|UG 5161 A-ugcagac- ------u-ca cgc|gggcua ucga-ucggc ----au(gac ag-)auggug 5221 gu-guaugcc cuuc------ ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----gcu--c aGC-----AA 5341 gGCGGUGUG( -gucuc--)C ACACCGAU-g gcaaguggca gucacu--gg uucC-AAUGA 5401 ACA-gccuga -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->---aggau ucucgugc-- ---------- ----cucagg --ac-ccu-- ug-uguCCGU 5581 A|CU-gCAUC ACC(GCAGCC )GG|UCU-CC UCGAC(UAGA C)GUCGCU-| UGUCC-||A- 5641 CG-G--ACGA AAUGCAG-CU A-AGGGAAGU CGGCAA-ACU -GGCCGUGCA CC(UUUG)GA 5701 AGAUACGGU| GGCUCCAGA- ---------- ------------ -------UGU GGAACU|G(- --UUG)CUGU 6601 GCAGGGGAAU C|-UGACUGU UU(AAUUG)A AACCCAGCUU UGUG|A--AG G|GAC(---c 6661 agcu)GGC-- ---------- --U-GGUUCC GUGAGGUG-- ACUUCUGCCC AGU|GCUCUG 6721 AU-UGUCAA- ---ugcgaa- ----(gaga) -----uucag ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAA-C( 6841 CAAUU)AUUG AC|GCGCAUG AAUGGAUCAA CGAGAUUCCU GCUGU-CCCU AGUCGCUGUC 6901 UG|GUGAACC A|aca-aCCA AG(GGAA-CG GG)CUUGGAU -G-UGU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGUUUGAC UCU-|AGUUU G---AUA-CU |GUGCAACAA CAUGUGGGGC 7021 GUAGCAUAGG UGGGAGGug- ---------- --<------- ---------- ----agugcc 7081 (a---//--- )ggugcg--- ---------- ---------- ------->(- -----)---- 7141 -------agC C-UGCAGUGA AA-UACCACU |ACCUUCAC- -CGUUG-UUU UACUCAu--- 7201 ---------- ---------| --a ACAUC-GAUC A-GUUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|GCCUUU (UACAACACA AC-)GAAG-G C|G|U|CCUG AAGCA-UUGC |UCAGG-CAG 7621 -A(ACA---- GAAA)UCUCC CAGGGA|GG( A|G--AAGG) CCAAAGG-UG C-UGCUGAUG 7681 -CUGCGAC(u cucaguac-- )GAGUCCGAA ACGU(-GCAA )UCGUGG|CC --UAA|CGA- 7741 UCCUUUGGuc aa-------- ---------- ---------- ---------- ---------- 7801 ---------- ---gugugcg a--a-uuc(- -uGGA-U--A Uc--)----- ---------- 7861 -----gaa|g CCAGAG-GUG UC|AGA--AA AAUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCUGCCAAGC G(UUCAA)AG CGACGUCGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AGCU|UC CCACCCG(CA -GC-)CGAGU GGAA-GAGU| UGGAU(UGUU C)ACCCACCA 8041 ACAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUGGUU 8101 UUACCCUCCU GCCAC-a<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- gaug>---GG CG-UG-ac-A AUGGCAUCAC AUGG(UAGUA 8281 C(GAGA)GGA AC-)CCUUGU G|GCACUCCC CUGGUUUCCA CCG|-UGAGU C(GAGC)GAC 8341 UGGUGUAGUG A-AGCUACC- AA-GUGA--C GGAUACUGAC U(GGACGCAU CUU-A)AGCC 8401 UGAAUCCGAG ACCAggccua cagC--AUGC C --|------( ---)------ 8701 --ccaacacc |ccgcc(-ca gacca)gg-c ugg------- a-u|cugcg- gcgaguguaa 8761 gu-guucaga gguuau---- --//uguccg auccguug(a gcuc)caa-g gccgggcuuc 8821 ugcagggagu ggcuucggc- ugc|-cccug c|uggggccg a--ccu-gac aga-gugggu 8881 g----|---- ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS B.caudat.1 9262 bp RNA RNA 11-JAN-191 DEFINITION Bodo caudatus. ACCESSION No information KEYWORDS No information. SOURCE Bodo caudatus. ORGANISM Bodo caudatus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L19405 LOCUS BODRR24S 962 bp ss-rRNA RNA 10-JUN-1993 DEFINITION Bodo caudatus 24S ribosomal RNA alpha subunit. ACCESSION L19405 KEYWORDS 24S ribosomal RNA; 24S ribosomal RNA alpha-subunit. SOURCE Bodo caudatus rRNA. ORGANISM Bodo caudatus Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Bodonidae; Bodoninae. REFERENCE 1 (bases 1 to 962) AUTHORS Fernandes,A.S., Nelson,K. and Beverley,S.M. TITLE Molecular evolutionary comparisons suggest multiple origins of vertebrate parasitism in trypanosomatid protozoa JOURNAL Unpublished (1993) FEATURES Location/Qualifiers rRNA <1..>962 /product="24S ribosomal RNA alpha subunit" /gene="24S rRNA" /evidence="EXPERIMENTAL" source 1..962 /organism="Bodo caudatus" /sequenced_mol="rRNA" BASE COUNT 267 a 210 c 274 g 211 t ORIGIN BASE COUNT 267 a 210 c 274 g 211 t 8300 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~|~(~~~)~ |~~~~~(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~A GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUAA)G- 1441 C-GAAAGUuu gAAA--GCAC UUU(gg-aa- )AGAG-AGUG A-CAUAGACC C-UGAAAU-C 1501 GUGACAAUG< ac---aauga aa--gcaccu ccauuuca-u uggccagaa- -ccagcccgc 1561 aa-------- -------gca u--ua-uc-g cggg-(-ucc c----)-cc- ugc-ggcaua 1621 c---aagugc au-gguuu-- ---cggguau uggug----- --augggacc aggacc---- 1681 cgcggcaccc cc(caauaaa a---)ggggg cgagccgcgg cgucuuccc- cc-------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------aag au--cucaaa ca-uuuggcg 2521 -aua------ ---------- ggaaaug--- gggugucuuc >------a-C CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCAAGGGa-g aagaua---( u-ugu-ugcc 2641 ag)------- ---------- ---u-acuu- ---------- --cuCUCGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcgaacu ------cau- ggugugcauu uuuu------ ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- --------aa acucaacacc ga-cc----- 3121 --ggc-ccga uuuuag---- -gg--uugag u]-------- ---------u cGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AGGGU GAAGCC--gg 3241 (GAAA----- -----)cuc- GGU-GGAGGC CUG-UA---G CG-GUGCUGA (CGUGCAAA) 3301 UCG-C-UCGC AUGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACAU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUu--|-- -|guuugaa- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------a 3661 a-aguAUUGU -G|CGG-gUA AA-GCAAAUG AUUAGAGGA- -----AUUGG UGUU--(cuu 3721 a-g)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAGAaaa -cccg-acc- 3781 uucgcuagcu ---------- ----gcaag- u---cggaua aaaaagaauu a--------- 3841 ---------- ---------- ---------- a|GG-CACCA -AGU-GGGCC -UUc-uUCG( 3901 G-UAAG)CGG --C-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGG--- AUAUGUG--G 3961 C|GUCAAAAC u-ua-ug-gg cuCAUucu-- ------cgau acguga---- -AAAGGGUGU 4021 U--AGUGGAU AGGGACA-GU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AAC-)AC|-- -UCACCAACC -GAAUCCACC GG~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS B.caudat.2 9262 bp RNA RNA 11-JAN-191 DEFINITION Bodo caudatus. ACCESSION No information KEYWORDS No information. SOURCE Bodo caudatus. ORGANISM Bodo caudatus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L19406 LOCUS BODRR24SA 980 bp ss-rRNA RNA 10-JUN-1993 DEFINITION Bodo caudatus 24S ribosomal RNA large subunit. ACCESSION L19406 KEYWORDS 24S ribosomal RNA; 24S ribosomal RNA alpha-subunit. SOURCE Bodo caudatus rRNA. ORGANISM Bodo caudatus Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Bodonidae; Bodoninae. REFERENCE 1 (bases 1 to 980) AUTHORS Fernandes,A.S., Nelson,K. and Beverley,S.M. TITLE Molecular evolutionary comparisons suggest multiple origins of vertebrate parasitism in trypanosomatid protozoa JOURNAL Unpublished (1993) FEATURES Location/Qualifiers rRNA <1..>980 /product="24S ribosomal RNA alpha subunit" /gene="24S rRNA" /evidence="EXPERIMENTAL" source 1..980 /organism="Bodo caudatus" /sequenced_mol="rRNA" BASE COUNT 271 a 217 c 279 g 213 t ORIGIN BASE COUNT 271 a 217 c 279 g 213 t 8282 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~|~(~~~)~ |~~~~~(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~A GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUuu gAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-CAUAGACC C-UGAAAU-C 1501 GUGACAAUG< ac---aauga aa--gcaccu ccauuuca-u uggccagaa- -ccagc--gc 1561 aa-------- -------gca u--ua-uccg cgggg(-ucc -----)ccc- ugccggcaua 1621 c---aagugc auugguuu-- ---cggguau uggua----- --augggacc aggacc---- 1681 cgcggcaccc cu(ucguaaa acaa)ggggg cgagccgcgg cgucuucccc cc-------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------aag au-cuucaaa ca-uuuggcg 2521 -aua------ ---------- ggaaaug--- gggugucuuc >------a-C CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCAAGGGa-g aagaua---( u-ugu-ugcc 2641 ag)------- ---------- ---u-acuu- ---------- --cuCUCGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcgaac- -gcauccau- ggugugcauu uuuu------ ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- --------aa acucaacacc ga-cc----- 3121 --ggc-ccga uuuuag---- -gg--uugag u]-------- ---------u cGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CCCG GGU-GGAGGC CUG-UA---G CG-GUGCUGA (CGUGCAAA) 3301 UCG-C-UCGC AUGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGU CGGUUCACAU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUu--|-- -|guauaua- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------g 3661 a-aguACUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGA- -----AUUGG UGUU--(cuu 3721 a-g)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AGUG |UGCAGAaaa -cccg-acc- 3781 uucgcuagcu ---------- ----gcaaga u---cggaua aaaaagaauu a--------- 3841 ---------- ---------- ---------- a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGGcG AUGCGG(AA- UGA-)CCG-- CUUAGGG--- AUAUGUG--G 3961 C|GCUAAAAC u-ua-ug-gg cuCAUucu-- ------cgau acguga---- -AAAGGGUGU 4021 U--AGUGGAU uaGGACA-GU UGGACGGUGG CC(AUGG-AA GUC)GGCACC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GG~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.borreli 9262 bp RNA RNA 11-JAN-191 DEFINITION Trypanoplasma borreli. ACCESSION No information KEYWORDS No information. SOURCE Trypanoplasma borreli. ORGANISM Trypanoplasma borreli. REFERENCE 1 (bases 1 to 4645) AUTHORS Maslov,D.A., Lukes,J., Jirku,M. and Simpson,L. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U39581 LOCUS TBU39581 984 bp rRNA INV 26-NOV-1995 DEFINITION Trypanoplasma borreli large subunit ribosomal RNA. ACCESSION U39581 KEYWORDS . SOURCE Trypanoplasma borreli. ORGANISM Trypanoplasma borreli Eukaryotae; mitochondrial eukaryotes; Euglenozoa; Kinetoplastida; Bodonidae; Trypanoplasma. REFERENCE 1 (bases 1 to 984) AUTHORS Maslov,D.A., Lukes,J., Jirku,M. and Simpson,L. TITLE Phylogeny of trypanosomes as inferred from the small and large subunit rRNAs: implications for the evolution of parasitism in the trypanosomatid protozoa JOURNAL Unpublished REFERENCE 2 (bases 1 to 984) AUTHORS Lukes,J. TITLE Direct Submission JOURNAL Submitted (27-OCT-1995) J. Lukes, Institute of Parasitology, Dept. of Molecular Parasitology, Branisovska 31, Ceske Budejovice, 37005, Czech Republic COMMENT NCBI gi: 1073253 FEATURES Location/Qualifiers source 1..984 /strain="Pg-JH (ATCC 50433)" /organism="Trypanoplasma borreli" /specific_host="Piscicola geometra" rRNA 1..984 /product="large subunit ribosomal RNA" BASE COUNT 274 a 212 c 280 g 218 t ORIGIN BASE COUNT 274 a 212 c 280 g 218 t 8278 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~|~(~~~)~ |~~~~~(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~UA GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUuu gAAA-AGCAC UUU(gg-ag- )AGAG-AGUG A-CGUAGAAC C-UGAAGU-C 1501 GUGAUAAUG< au---aauga aa--gcaccu ccauuuca-g uggccaaaa- -ccagcccua 1561 ca-------- -------gca u---uaucc- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- -aggaggg-u cuuuugacu- uucuucu--- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- --------gg 2101 caaccaagug caauacuggg guauugguga aaugggcggg uacaguggcg gugacacuca 2161 cgggcaaguc gccguucauu cccgugaugc acaaug---- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ----uuggcg 2521 -a-----u-- --------a- ggaaaug--- gggugucuuc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCAAGAGa-g aagaua---( u-ugu-ugcc 2641 ag)------- ---------- ---u-acuu- ---------- --cuCUCGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -cugc-cuac -gcagccau- ggugugcaca c----aacac gaa------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------u gcccaacacc gg-ccg---- 3121 ---gc-cccc cg-------- cgg--cugag c]-------- ---------U UGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCGGGG 3241 (GAAA----- -----)CCCA GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU AUGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACAU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUu--|-- -|-gu-caaa ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------g 3661 a-aguACUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGC- ----uuuugg uucu--(cuu 3721 a-g)--AGUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGUAGAaaa --acugguu- 3781 uucgcuaacu ---------- ---gucaaga u---cagaaa gaaaagaauu a--------- 3841 ---------- ---------- ---------- a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGG--- AUAUGUG--G 3961 C|GUCAAAAC u-ua-UG-GG CUCAUUCU-- ------cgau acguga---- -AAAGGGUGU 4021 U--GGUGGAU GAGGACA-AU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAAUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GGu|ac-c~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.congol.1 9262 bp RNA RNA 26-OCT-1995 DEFINITION Trypanosoma congolense.; . ACCESSION U22315 KEYWORDS . SOURCE Trypanosoma congolense. ORGANISM Trypanosoma congolense. REFERENCE 1 (bases 1 to 6991) AUTHORS Urakawa,T. and Majiwa,P.A. TITLE Physical and transcriptional organization of the ribosomal RNA genes of Trypanosoma (Nannomonas) cogolense JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 6991) AUTHORS Urakawa,T. TITLE Direct Submission JOURNAL Submitted (06-MAR-1995) Toyohiko Urakawa, Molecular Biology, International Livestock Research Institute (ILRI), Naivasha Road, Nairobi, Kenya STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U22315 NCBI gi: 1040856 BASE COUNT 552 a 550 c 674 g 552 t 6934 others ORIGIN 1 |--------- ---------- ---------- -----AACGU GUCGCGAUGG AUG|ACUUGG 61 |CUUCCUA|U U|uCGUUGAA GAA|CGCA(- -GCAA-AG)U |GC-GAUAAG ugguau-|[- 121 caauugcaga a-ucaucaca u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---ugccc|A AUCUUU-GAA CGC-(aaacg )-g-c|gcau 241 gggagaagcu c(-------- ---------- ---------- -----uucc- ---)gaguca 301 uccc-cgugc ---augccac -a--uucuca guguc-(--- ---ga----/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------aca )--gac-cug agu-gugg-c agg----ACC 481 AC|CCGCUAA -A--CU|UA( AGCA)UA-UU ACUCAG-C-G G-AGGAAA-- --AGAAAAC( 541 AAC-C)GU-G AU|UCUCUCA GU--cAGC(G GCGA)GCG-A A-----GAGG GAac------ 601 ------g--- ---------- ---------- ---------- -AACUCG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----uugcc gaaucggguc ---(ugaau- )---ggccuc gaguuguggc augacgugcc 781 gcc------u u--gggggcu gg-ugcgggc guggcugaau ucaaucgaaa agcaaa--cc 841 cguugcug-- ---------- ---------- ---------- ---------- aa-----ucu 901 a----caacc cuu-c-a-u( g-(-ugag-- )u)auuga-- ---------- --------GC 961 --|C(AAA)G |AAGG-(UGU CAGC)-CCau uu|-auucua u---gccacc c----accc- 1021 ---gcgccuc cucgggcg-g c---ccaaga ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGCACU GUU(----UG 1141 GGAA)UGCAG UGUCAA---G CCGGCA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAUUUGU-- ---------- ---------- ---------- )CUG-CCAAG GUU----AAA 1381 UA-------- --------CA GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUUU GAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-CAUAGAAC C-UGAAAU-C 1501 GUGACAACG< ac---aaugg aaguaccucc a--uuuc--- ----gacggc cagacccagc 1561 cgcgcgugug cauguguuua uucuuugccu ugggg(guuc aaaa-)ucc- cuuggcuuuu 1621 uccauugcgc gucgcggcgu ggcgugugug agugagcgga uuugcugggu gcgcuuugca 1681 ugccucccuu uuugguggua ugcauggugu gcucuuucc- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- --------gu gccucuc--- gacgcuggcg 2521 -aag------ ---------- gga-augg-- -ggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCaaggga-g ggguguuau( u-ucu-cuuu 2641 u-)------- -------gug agaa-ccuc- ---------- --uucucGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcgaa-u -gcauccgu- ggcgugcgcu uuuucuuuug uggau----- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ----uauaug gcccaacgcc gg-cc----- 3121 --ggc-cccg uuuugu---- -gg--cugcg c]-------- ---------G UGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CCCC GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU ACGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACGU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUc--|-- -|-gugucc- ggcaugcuuu uucug----- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- -------aaa 3601 aagagaggag cugcccgcgc cccacagcac acuguguuug uguguggcgu gauacga--a 3661 a-aguAUUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGC- -----aUUGG UGUU--(cuu 3721 g-u)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAAGaag cucggccuua 3781 gc-----cau uuuuuaua-- ------gcaa gg--ccggca gacaa----- ---------- 3841 ---------- ---------- ----gaauug a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGG--- AUAUGUG--G 3961 C|GUCG-AAA C-ucguG-GG CUCGUucu-- -------gau acguga---- -aaAGGGUGU 4021 U--GGUGGAU AGGGACA-GU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GGC|CC-CGA AAA--UGGAU 4141 G--ACG-CU- UAAGccccg| u|--gcguga uaGCCCAU-- --UAUUCCU| (- -----)gccc uuccg-aUGU AGAC------ 4441 --GUG|GC-G UG-GG-GG-- --------u- -gag-g-a-- c------GAA GCCG------ 4501 AUGGC(GUGA -)GCCUCGGa UGG|A-ccc| G--CCUCUA- GUGC-AGA-U CUUGGU|UG- 4561 GCGUAGCAAA -GAUCUAAC- G(gaaacau- ---------- ------auuc uaugaaaugc 4621 aa)CGUUGGA |UACUGGAGC G-GGG|AAGG AUU|UCGUGC CA-ACG(-GC ACU)CG|UAC 4681 ACGAGUUGUU |-CGGucaCU GAGC------ --------------- ---------- ---------- --------cc --ca-acu-- gc-agaCCGU 5581 A|CU--CAUC ACC(GCAUCA )GG|ucc-cc aagca(ucga a)u~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.congol.2 9262 bp RNA RNA 26-OCT-1995 DEFINITION Trypanosoma congolense.; . ACCESSION U22317 KEYWORDS . SOURCE Trypanosoma congolense. ORGANISM Trypanosoma congolense. REFERENCE 1 (bases 1 to 7635) AUTHORS Urakawa,T. and Majiwa,P.A. TITLE inferred from the sequences of ribosomal RNA genes Phylogenetic relationships among Salivarian trypanosomes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 7635) AUTHORS Urakawa,T. TITLE Direct Submission JOURNAL Submitted (06-MAR-1995) Toyohiko Urakawa, Molecular Biology, International Livestock Research Institute (ILRI), Naivasha Road, Nairobi, Kenya STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U22317 NCBI gi: 1040858 BASE COUNT 577 a 580 c 717 g 594 t 6794 others ORIGIN 1 |--------- ---------- ---------- -----AACGU GUCGCGAUGG AUG|ACUUGG 61 |CUUCCUA|U U|uCGUUGAA GAA|CGCA(- -GCAA-AG)U |GC-GAUAAG ugguau-|[- 121 caauugcaga a-ucaucaca u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---ugccc|A AUCUUU-GAA CGC-(aaacg )-g-c|gcau 241 gggagaagcu c(-------- ---------- ---------- -----uucc- ---)gaguca 301 uccc-cgugc ---augccac -auauucuca guguc-(--- ---ga----/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------aca )--gac-cug agu-gugg-c agg----ACC 481 AC|CCGCUAA -A--CU|UA( AGCA)UA-UU ACUCAG-C-G G-AGGAAA-- --AGAAAAC( 541 AAC-C)GU-G AU|UCUCUCA GU--cAGC(G GCGA)GCG-A A-----GAGG GAac------ 601 ------c--- ---------- ---------- ---------- -AACUCG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----uugcc gaaucggguc ---(ugaag- )---ggccuc gaguuguggc augacgcgcc 781 gccuuggggg --------cu gg-ugcgggc guggcugaau ucaaucgaaa agcaaa--cc 841 cguugcug-- ---------- ---------- ---------- ---------- aa-------u 901 c----caacc cuu-c-a-u( g-(-ugag-- )u)auuga-- ---------- --------GC 961 --|C(AAA)G |AAGG-(UGU CAGC)-CCau uu|-auucca u---gccacc g----auacc 1021 c--gcgccuc cucgggcg-g c---ccaaga ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGCACU GUU(----UG 1141 GGAA)UGCAG UGUCAA---G CCGGCA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAUUUGU-- ---------- ---------- ---------- )CUG-CCAAG GUU----AAA 1381 UA-------- --------CA GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUUU GAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-CAUAGAAC C-UGAAAU-C 1501 GUGACAACG< ac---aaugg aaguaccucc auuucgac-g gccagaccca gccgcgcgug 1561 ugcaugugug ---------- ---uuugccu cgggg(guuc aaaa-)ucc- cguggcuuug 1621 uuacuuauug cgcgucgcgg cguggcgugu gugagugagc ggaauagcag ggcucaugca 1681 uauaucuagc ccucucucua guggggaggg cgugugugug cu-------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- --cuuuccgu gcgucuc--- gacgcuggcg 2521 -aag------ ---------- gga-augg-- -ggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCaagggagg gguauugu-- augaguucuu 2641 ucucuuggg- ---------- -aga-accuc ---------- --uucccGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcgaaug caucuguggu gugcgccuuc uuuuuugaua u--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------g gcccaaugcc gg-cc----- 3121 --ggc-cccg uuugcgu--- -gg--cugcg c]-------- ---------G UGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CCCC GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU ACGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACGU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUc--|-- -|gucucagg cauguuuuua aaugaaaaag augcccgcgu 3481 cccucacuuu cucucgcgca cucuuuuucc cuuucgccuu ccuucuccuu cuucccuucu 3541 uccucucccu cuuucucucu gucacaggag agcgggugug gggugugugg uggguguuau 3601 gagggcuggg agguugggaa auauguggug uuguguggag uagugugugg cgugauacga 3661 aaaguAUUGU --|CGG--UA AA-GCAAAUG AUUAGAGGC- -----aUUGG UGUU--(cuu 3721 g-u)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAAGaag cgcggucuua 3781 gc--cauaua uaua------ ------gcaa gg--ccggca gacaa----- ---------- 3841 ---------- ---------- ----gaauug a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGG--- AUAUGUG--G 3961 C|GUCG-AAA C-ucguG-GG CUCAUucu-- ------gacu ucguga---- -aaAGGGUGU 4021 U--GGUGGAU AGGGACA-GU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GGC|CC-CGA AAA--UGGAU 4141 G--ACG-CU- UAAGccccg| u|---cguga uaGCCCAU-- --UAUUCCU| (- -----)gccc uuccg-aUGU AGAC------ 4441 --GUG|GC-G UG-GG-GG-- --------u- -gag-g-a-- c------GAA GCCG------ 4501 AUGGC(GUGA -)GCU-CGGa UGG|A-ccc| G--CCUCUA- GUGC-AGA-U CUUGGU|UG- 4561 GCGUAGCAAA -GAUCUAAC- G(gaaacau- ---------- ------auuc uaugaaaugc 4621 aa)CGUUGGA |UACUGGAGC G-GGG|AAGG AUU|UCGUGC CA-ACG(-GC ACU)CG|UAC 4681 ACGAGUUGUU |-CGGucaCU GAGC------ --------------- ---------- ---------- --------cc --ca-acu-- gc-agaCCGU 5581 A|CU--CAUC ACC(GCAUCA )GG|ucc-cc aagca(ucga a)u~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.congol.3 9262 bp RNA RNA 26-OCT-1995 DEFINITION Trypanosoma congolense.; . ACCESSION U22318 KEYWORDS . SOURCE Trypanosoma congolense. ORGANISM Trypanosoma congolense. REFERENCE 1 (bases 1 to 5365) AUTHORS Urakawa,T. and Majiwa,P.A. TITLE inferred from the sequences of ribosomal RNA genes Phylogenetic relationships among Salivarian trypanosomes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 5365) AUTHORS Urakawa,T. TITLE Direct Submission JOURNAL Submitted (06-MAR-1995) Toyohiko Urakawa, Molecular Biology, International Livestock Research Institute (ILRI), Naivasha Road, Nairobi, Kenya STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U22318 NCBI gi: 1040859 BASE COUNT 538 a 560 c 697 g 487 t 6980 others ORIGIN 1 |--------- ---------- ---------- -----AACGU GUCGCGAUGG AUG|ACUUGG 61 |CUUCCUA|U U|uCGUUGAA GAA|CGCA(- -GCAA-AG)U |GC-GAUAAG ugguau-|[- 121 caauugcaga a-ucauucca u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---uaccu|A AUCUUU-GAA CGC-(aaacg )-g-c|gcau 241 gggagaagcc c(-------- ---------- ---------- -----cacc- ---)gggcca 301 uccc-cgugc ---augccac -a--aucuca guguc-(--- ---gaac--/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------aca )--gac-cug agu-gugg-c agg----ACC 481 AC|CCGCUAA -A--CU|UA( AGCA)UA-UU ACUCAG-C-G G-AGGAAA-- --AGAAAAC( 541 AAC-C)GU-G AU|UCUCUCA GU--cAGC(G GCGA)GCG-A A-----GAGG GAcg------ 601 ------g--- ---------- ---------- ---------- -AACUCG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----uugcc gaaucuuguc ccc(gcga-- )gggggccuu gaguuguggc augacgcgcc 781 gucug----- -----gggca gg-ugcggau guggcggaau ucaaucggaa agcaaa--cc 841 cguugcug-- ---------- ---------- ---------- ---------- aa-------c 901 a----caacc cuu-c-a-u( g-(-ugag-- )u)auuga-- ---------- --------GC 961 --|C(AAA)G |AAGG-(UGU CAGC)-CCau ua|-cac--- ----gccacu c----ccc-- 1021 ---gugccuc cucuggcg-g c---ccaaga ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGCACU GUU(----UG 1141 GGAA)UGCAG UGUCAA---G CCGGCA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAUUUGU-- ---------- ---------- ---------- )CUG-CCAAG GUU----AAA 1381 CA-------- --------UA GAGUA-GGAA GACCGAUAUG UAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUUU GAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-CAUAGAAC C-UGAAAU-C 1501 GUGACAACG< gc---aaugg aaguaccucc auuucgac-g gccagaccca gccgcgcgug 1561 ugcaugaugc gccggggguu ucgaaucccg gcgcuucucc uguugcgcga cgcggcaugg 1621 cgugcgugag ugggcggaac gaagggugug cgugcuucgc acaucgugcg cuucugcgcg 1681 uggugugcgg cauugcgcgc ccugu----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ------ccgu gcgucuc--- gacgcuggcg 2521 -aag------ ---------- gga-augg-- -ggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCaagggagg ggugu----( g-cuaaggug 2641 ag)------- ---------- ---a-accu- ---------- --cucucGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcggaug cauccguggu gugcgcaugc gccgcgaggc gug------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ----uugacu gcccaacgcc gg-cc----- 3121 --ggc-cccg auugagu--- -gg--cugcg c]-------- ---------G GGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CCCC GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU ACGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACGU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUu--|-- -|-guuccuc uccucugug- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- -ggaggggag 3661 a-aguAUUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGC- -----aUUGG UGUU--(cuu 3721 g-u)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAAAaag cgcggucuua 3781 gcuagugugg uuuca--cau auucaugcaa gg--ccggcg gacaa----- ---------- 3841 ---------- ---------- ----gaauug a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGG--- AUAUGUG--G 3961 C|GUCG-AAA C-ucguG-GG CUGCUucg-- -------gau acguga---- -aaAGGGUGU 4021 U--GGUGGAU AGGGACA-GU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GGC|CC-CGA AAA--UGGAU 4141 G--ACG-CU- UAAGccccg| u|--gcguga ugGCCCAU-- --UAUUCCU| (- -----)gccc uuccg-aUGU AGAC------ 4441 --GUG|GC-G UG-GG-GG-- --------u- -gag-g-a-- c------GAA GCCG------ 4501 AUGGC(GUGA -)GCCUCGGa UGG|A-ccc| G--CCUCUA- GUGC-AGA-U CUUGGU|UG- 4561 GCGUAGCAAA -GAUCUAAC- G(gaaagcu- ---------- --------ua aucgaaaugc 4621 aa)CGUUGGA |UACUGGAGC G-GGG|AAGG AUU|UCGUGC CA-ACG(-GC ACU)CG|CAC 4681 ACGAGUUGUU |-CGGucaCU GAGC------ --------------- ---------- ---------- --------cc --ca-acu-- gc-agaCCGU 5581 A|CU--CAUC ACC(GCAUCA )GG|ucc-cc aagca(ucga a)u~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.congol.4 9262 bp RNA RNA 26-OCT-1995 DEFINITION Trypanosoma congolense.; . ACCESSION U22319 KEYWORDS . SOURCE Trypanosoma congolense. ORGANISM Trypanosoma congolense. REFERENCE 1 (bases 1 to 6969) AUTHORS Urakawa,T. and Majiwa,P.A. TITLE Phylogenetic relationships among Salivarian trypanosomes inferred from the sequences of ribosomal RNA genes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 6969) AUTHORS Urakawa,T. TITLE Direct Submission JOURNAL Submitted (06-MAR-1995) Toyohiko Urakawa, Molecular Biology, International Livestock Research Institute (ILRI), Naivasha Road, Nairobi, Kenya STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U22319 NCBI gi: 1040860 BASE COUNT 553 a 549 c 676 g 555 t 6929 others ORIGIN 1 |--------- ---------- ---------- -----AACGU GUCGCGAUGG AUG|ACUUGG 61 |CUUCCUA|U U|uCGUUGAA GAA|CGCA(- -GCAA-AG)U |GC-GAUAAG ugguau-|[- 121 caauugcaga a-ucaucaca u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---ugccc|A AUCUUU-GAG CGC-(aaacg )-g-c|gcau 241 gggagaagcu c(-------- ---------- ---------- -----uucc- ---)gagcca 301 uccc-cgugc ---augccac -a--uucuca guguc-(--- ---gacc--/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------aca )--gac-cug agu-gugg-c agg----ACC 481 AC|CCGCUAA -A--CU|UA( AGCA)UA-UU ACUCAG-C-G G-AGGAAA-- --AGAAAAC( 541 AAC-C)GU-G AU|UCUCUCA GU--cAGC(G GCGA)GCG-A A-----GAGG GAac------ 601 ------g--- ---------- ---------- ---------- -AACUCG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----uugcc gaaucggguc ---(ugaaa- )---ggccuc gaguuguggc augacgugcc 781 gccuuggggg --------cu gg-ugcgggc guggcugaau ucaaucgaaa agcaaa--cc 841 cguugcug-- ---------- ---------- ---------- ---------- aa-----uuu 901 a----caacc cuu-c-a-u( g-(-ugag-- )u)auuga-- ---------- --------GC 961 --|C(AAA)G |AAGG-(UGU CAGC)-CCau uu|-auucug u---gccacc c----accc- 1021 ---gcgccuc cucgggcg-g c---ccaaga ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGCACU GUU(----UG 1141 GGAA)UGCAG UGUCAA---G CCGGCA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAUUUGU-- ---------- ---------- ---------- )CUG-CCAAG GUU----AAA 1381 UA-------- --------CA GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUUU GAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-CAUAGAAC C-UGAAAU-C 1501 GUGACAACG< gc---aaugg aaguaccucc auuucgac-g gccagaccca gccgcgcgug 1561 ugcaugugug uauuc----- ---ucugccu cgggg(guuc aaaa-)ucc- cuuggcuuuu 1621 uuccauugcg cgucgcggcg uggcgugugu gagugagcgg auuuguuggg cacgcuuugc 1681 augccuuuuu cuuugguaug cauggugugc ucu------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ----uuccgu gccucuc--- gacgcuggcg 2521 -aag------ ---------- gga-augg-- -ggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCaagggagg gguauugu-- --gugauauu 2641 ucucauuugu g--------- -aga-accuc ---------- --uucucGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcgaaug caucuguggc gugcgcuuuu uucuuuugcg gauucuau-- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------g gcccaacgcc gg-cc----- 3121 --ggc-cccg uuuuguugu- -gg--cugcg c]-------- ---------G UGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CCCC GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU ACGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACGU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUc--|-- -|-guguccg gcaugcuuuu ucu-gaaaaa gagagaagcu 3481 gcccgcgucc caccguguuu guguguggcg ugauacga-- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------a 3661 a-aguAUUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGC- -----aUUGG UGUU--(cuu 3721 g-u)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAAGaag cgcggccuua 3781 gccauuuuuu au--a----- ------gcaa gg--ccggca gacaa----- ---------- 3841 ---------- ---------- ----gaauug a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGG--- AUAUGUG--G 3961 C|GUCG-AAA C-ucguG-GG CUCAUucu-- -------gau acguga---- -aaAGGGUGU 4021 U--GGUGGAU AGGGACA-GU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GGC|CC-CGA AAA--UGGAU 4141 G--ACG-CU- UAAGccccg| u|--gcguga uaGCCCAU-- --UAUUCCU| (- -----)gccc uuccg-aUGU AGAC------ 4441 --GUG|GC-G UG-GG-GG-- --------u- -gag-g-a-- c------GAA GCCG------ 4501 AUGGC(GUGA -)GCCUCGGa UGG|A-ccc| G--CCUCUA- GUGC-AGA-U CUUGGU|UG- 4561 GCGUAGCAAA -GAUCUAAC- G(gaaacau- ---------- ------auuc uaugaaaugc 4621 aa)CGUUGGA |UACUGGAGC G-GGG|AAGG AUU|UCGUGC CA-ACG(-GC ACU)CG|UAC 4681 ACGAGUUGUU |-CGGucaCU GAGC------ --------------- ---------- ---------- --------cc --ca-acu-- gc-agaCCGU 5581 A|CU--CAUC ACC(GCAUCA )GG|ucc-cc aagca(ucga a)u~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.simiae 9262 bp RNA RNA 26-OCT-1995 DEFINITION Trypanosoma simiae.; . ACCESSION U22320 KEYWORDS . SOURCE Trypanosoma simiae. ORGANISM Trypanosoma simiae. REFERENCE 1 (bases 1 to 5204) AUTHORS Urakawa,T. and Majiwa,P.A. TITLE Phylogenetic relationships among Salivarian trypanosomes inferred from the sequences of ribosomal RNA genes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 5204) AUTHORS Urakawa,T. TITLE Direct Submission JOURNAL Submitted (06-MAR-1995) Toyohiko Urakawa, Molecular Biology, International Livestock Research Institute (ILRI), Naivasha Road, Nairobi, Kenya STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U22320 NCBI gi: 1040861 BASE COUNT 534 a 554 c 697 g 488 t 6989 others ORIGIN 1 |--------- ---------- ---------- -----AACGU GUCGCGAUGG AUG|ACUUGG 61 |CUUCCUA|U U|uCGUUGAA GAA|CGCA(- -GCAA-AG)U |GC-GAUAAG ugguau-|[- 121 caauugcaga a-ucauuuca u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---uaccu|A AUCUUU-GAA CGC-(aaacg )-g-c|gcau 241 gggagaagcc c(-------- ---------- ---------- -----cucc- ---)gggcca 301 uccc-cgugc ---augccac -a--aucuca guguc-(--- ---gaac--/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------aca )--gac-cug agu-gugg-c agg----ACC 481 AC|CCGCUAA -A--CU|UA( AGCA)UA-UU ACUCAG-C-G G-AGGAAA-- --AGAAAAC( 541 AAC-C)GU-G AU|UCUCUCA GU--cAGC(G GCGA)GCG-A A-----GAGG GAcg------ 601 ------g--- ---------- ---------- ---------- -AACUCG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----uugcc gaaucugguc ccc(augu-- )gggggccuu gaguuguggc augacgcgcc 781 gucug----- -----gggca gg-ugcggau gugguggaau ucaaucggaa agcaaa--cc 841 cguugcug-- ---------- ---------- ---------- ---------- aa-------c 901 a----caacc cuu-c-a-u( g-(-ugag-- )u)auuga-- ---------- --------GC 961 --|C(AAA)G |AAGG-(UGU CAGC)-CCau ug|-cac--- ----gccacu c----ccc-- 1021 ---gcgccuc cucuggcg-g c---ccaaga ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGCACU GUU(----UG 1141 GGAA)UGCAG UGUCAA---G CCGGCA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAUUUGU-- ---------- ---------- ---------- )CUG-CCAAG GUU----AAA 1381 CA-------- --------CA GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUUU GAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-CAUAGAAC C-UGAAAU-C 1501 GUGACAACG< gc---aaugg aaguaccucc auuucgac-g gccagaccca gccgcgcgug 1561 ugcauguggc gccggggguu ucgaaucccg gcgcuuuu-c uguugcgcga cgcggcgugg 1621 cgugcgugag ugggcggaau gaauggcgug cgugcucucg cauugug-ug cuugugugcg 1681 cg--gugcgg cgcgcgu-gc ccugu----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ------ccgu gcgucuc--- gacgcuggcg 2521 -aag------ ---------- gga-augg-- -ggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCaagggagg gguguuu--( a-cgugugua 2641 ug)------- ---------- -aga-accu- ---------- --cucucGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcgaagg cauccguggu gugcgcaugc gccgcaaggc gug------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ----uugagu gcucaacgcc gg-cc----- 3121 --ggc-cccg aucgagu--- -gg--cugcg c]-------- ---------G CGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CCCC GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU ACGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACGU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUu--|-- -|-guuccuc ucucgcggg- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ----gaggag 3661 a-aguAUUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGC- -----aUUGG UGUU--(cuu 3721 g-u)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAAGaag cucggucuua 3781 gcuagugugg uuucac--au guucaugcaa gg--ccggcg ggcaa----- ---------- 3841 ---------- ---------- ----gaauua a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGG--- AUAUGUG--G 3961 C|GUCG-AAA C-ucguG-GG CUCAUucg-- -------gau acguga---- -aaAGGGUGU 4021 U--GGUGGAU AGGGACA-GU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GGC|CC-CGA AAA--UGGAU 4141 G--ACG-CU- UAAGccccg| u|--gcguga uaGCCCAU-- --UAUUCCU| (- -----)gccc uuccg-aUGU AGAC------ 4441 --GUG|GC-G UG-GG-GG-- --------u- -gag-g-a-- c------GAA GCCG------ 4501 AUGGC(GUGA -)GCCUCGGa UGG|A-ccc| G--CCUCUA- GUGC-AGA-U CUUGGU|UG- 4561 GCGUAGCAAA -GAUCUAAC- G(gaaagcu- ---------- --------aa aucgaaauuc 4621 aa)CGUUGGA |UACUGGAGC G-GGG|AAGG AUU|UCGUGC CA-ACG(-GC ACU)CG|CAC 4681 ACGAGUUGUU |-CGGucaCU GAGC------ --------------- ---------- ---------- --------cc --ca-acu-- gc-agaCCGU 5581 A|CU--CAUC ACC(GCAUCA )GG|ucc-cc aagca(ucga a)u~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.cruzi.1 9262 bp RNA RNA 11-JAN-191 DEFINITION Trypanosoma cruzi str. Y (clones EA3). ACCESSION No information KEYWORDS No information. SOURCE Trypanosoma cruzi str. Y (clones EA3). ORGANISM Trypanosoma cruzi. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: M28885 LOCUS TRBRRNAZ 2378 bp ds-DNA INV 15-SEP-1990 DEFINITION T.cruzi 24S-alpha and S1 rRNA genes, complete cds., and 24S-beta rRNA gene, 5' end. ACCESSION M28885 KEYWORDS 24S ribosomal RNA alpha-subunit; 24S ribosomal RNA beta-subunit; S1 ribosomal RNA. SOURCE T.cruzi (strain Y) epimastigote DNA, clones EA3. ORGANISM Trypanosoma cruzi Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 2378) AUTHORS Vieira de Arruda,M., Reinach,F.C., Colli,W. and Zingales,B. TITLE Sequence of the 24S-alpha ribosomal RNA gene and characterization ofa corresponding pseudogene from Trypanosoma cruzi JOURNAL Mol. Biochem. Parasitol. 40, 35-42 (1990) STANDARD full staff_review COMMENT Draft entry and printed sequence for [1] kindly submitted by B.Zingales, 06-OCT-1989. FEATURES Location/Qualifiers rRNA 87..2064 /note="24S-alpha ribosomal RNA" rRNA 2111..2325 /note="S1 ribosomal RNA" rRNA 2368..>2378 /note="24S-beta ribosomal RNA" BASE COUNT 674 a 484 c 619 g 601 t ORIGIN BASE COUNT 602 a 462 c 602 g 538 t 7058 others ORIGIN 1 |nnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnn|nnnnnn 61 |nnnnnnn|n n|nnnnnnnn nnn|nnnn(n nnn-----)- |--------- ---------- 121 ---------- ---------- ---------- ---------- ---------- -------]-- 181 ---------- ---------- --------|- ---------- ----(----- )----|---- 241 ---------- -(-------- ---------- ---------- ---------- ---)------ 301 ---------- ---------- ---------- ------(--- ---------/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------aca )--gac-cug agu-gugg-c aGG----ACU 481 AC|CCGCCGA -A--CU|UA( AGCA)UA-UU ACUAAG-C-G G-AGGAAA-- --AGAAAAC( 541 AAC-C)GU-G AU|UCUCUCA GUacauGC(G GCGA)GCG-A A-----GAGG -AUc------ 601 ------c--- ---------- ---------- ---------- -AACUCG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----uugcc gaaucgguuc ---(uuauag )---gaacuu gaguuguggc aagaaacgcg 781 ucgc-----u uc-gagggcu gg-ugcagga auggugaaau ucaauugcaa agcaaa--cc 841 cguugcug-- ---------- ---------- ---------- ---------- aa-------u 901 a----caacc cuu-c-a-u( g-(-ugag-- )u)auuga-- ---------- --------GC 961 --|C(AAA)G |AAGG-(UGU UAGC)-CCAU UG|------- ---agccaug ------aacc 1021 uaagcgccuc cuuaagcg-a a---ccaaga ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGCACU GCU(----UG 1141 GGAG)UGCAG UGUCAA---G CUGGCA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAUGUGU-- ---------- ---------- ---------- )CUG-CCAAA GUU----AAA 1381 UA-------- --------CA GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUUU GAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-CAUAGAAC C-UGAAGU-C 1501 GUGACAAUG< ac---aaugg aaguaccucc a--uuuca-a cggccaaaa- -ccagccucu 1561 uuuuucuuac ugauauu-au au-uauauua guagc(agag cuua-)ucc- gcugggguuu 1621 aaaauccagu ggguaacccu g--------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------a aa-agcaaga acgaggucau gguguacaaa auguguguau 2341 aag-cggaga guaagaagg- agcgugguuc auuguuuuuu cucucucuuu --ucccccuu 2401 c-gcggggag aggg-ggggg --agaggcaa agcgcuccuu -cuucuucgu guu--cucau 2461 auuu-ggcg- aa-------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ggaaaug--- gggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCAAGGGa-g aagaua---( u-cgu-ugcc 2641 ag)------- ---------- ---u-acuu- ---------- --cuCUCGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcaaauu -gcaucugu- ggugugcaca cuuaau-gaa uaauauauaa ccauauauua 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---uuuguu- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -------guu gcccaacacc ga-cc----- 3121 --ggc-cccc cgug------ -gg--uugag u]-------- ---------U GGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUggAAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CUCG GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGC AUGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACAU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUu--|-- -|guuugaa- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------a 3661 a-aguAUUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGC- -----AUUGG UGUU--(cuu 3721 a-g)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAAAcaa -accgcgcc- 3781 uuagccaaaa uuuug----- --uagcaagg u---cggaca gacaa----- ---------- 3841 ---------- ---------- ----gaauua a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGG--- AUAUGUG--G 3961 C|GUCA-AAA C-uuaUG-GG CUCAUucu-- ------cgau acguga---- -AAAGGGUGU 4021 U--GGUGGAU AGGGACA-GU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GGC|CC-CGA AAA--UGGAU 4141 G--ACG-CU- CAAGCCCAA| U|--uaguga uuGCCCAU-- --UAUUCCU| (- -----)gccc uuccg-aUGU AGAU------ 4441 --GUG|GC-G UG-GA-GG-- --------U- -A-A-GGa-- c------GAA GCUG------ 4501 AuGGC(GUGA -)GCCUCAGa UGG|A-CCA| G--CCUCUA- GUGC-AGA-U CUUGGU|UG- 4561 GCGUAGCAAA -GAUCUAAC- G(gaaaacu- ---------- ---------a uuuaacaugc 4621 aa)CGUUGGA |U-CUGGAGC G-GGG|AAGG AUU|UCGUGC CA-ACG(-GC ACU)CG|UAC 4681 ACGAGUUGUU |-CGGauacu gagc------ -(----)-------- ---------- ---------- --------cc --ca-acu-- gc-ag~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.cruzi.2 9262 bp RNA RNA 04-OCT-1994 DEFINITION Trypanosoma cruzi. str. La Cruz, Jalisco; 28S ribosomal RNA; 5.8S ribosomal RNA; internal transcribed spacer 1; internal transcribed spacer 2; internal transcribed spacer 3; internal transcribed spacer 4; internal transcribed spacer 5. ACCESSION L22334 KEYWORDS 28S ribosomal RNA; 5.8S ribosomal RNA; internal transcribed spacer 1; internal transcribed spacer 2; internal transcribed spacer 3; internal transcribed spacer 4; internal transcribed spacer 5. SOURCE Trypanosoma cruzi. str. La Cruz, Jalisco. ORGANISM Trypanosoma cruzi. REFERENCE 1 (bases 1 to 6362) AUTHORS Gomez,E., Martinez-Calvillo,S. and Hernandez,R. TITLE A model for the secondary structure of the large subunit ribosomal rna from trypanosoma cruzi JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L22334 NCBI gi: 556442 BASE COUNT 1188 a 997 c 1227 g 1167 t 4683 others ORIGIN 1 |--------- ---------- ---------- -----AACGU GUCGCGAUGG AUG|ACUUGG 61 |CUUCCUA|U U|uCGUUGAA GAA|CGCA(- -GCAA-AG)U |GC-GAUAAG UGguau-|[- 121 caauugcaga a-ucauucaa u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---uaccg|A AUCUUU-GAA CGC-(aaacg )-g-c|gcau 241 gggagaagcu c(-------- ---------- ---------- -----cuca- ---)gaguca 301 uccc-cgugc ---augccau -a-uuucuca guguc-(--- ---gaac--/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------aca )--gac-cug agu-gugg-c aGG----ACU 481 AC|CCGCCGA -A--CU|UA( AGCA)UA-UU ACUAAG-C-G G-AGGAAA-- --AGAAAAC( 541 AAC-C)GU-G AU|UCUCUCA GU--cAGC(G GCGA)GCG-A A-----GAGG GAUc------ 601 ------c--- ---------- ---------- ---------- -AACUCG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----uugcc gaaucgguuc ---(uuauag )---gaacuu gaguuguggc aagaaagcgu 781 cgc------u uc-gagggcu gg-ugcagga auggugaaau ucaauugcaa agcaaa--cc 841 cguugcug-- ---------- ---------- ---------- ---------- aa-------u 901 a----caacc cuu-c-a-u( g-(-ugag-- )u)auuga-- ---------- --------GC 961 --|C(AAA)G |AAGG-(UGU UAGC)-CCAU UG|------- ---agccaug ------aacc 1021 uaagcgccuc cuuaagcg-a a---ccaaga ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGCACU GCU(----UG 1141 GGAG)UGCAG UGUCAA---G CUGGCA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAUGUGU-- ---------- ---------- ---------- )CUG-CCAAA GUU----AAA 1381 UA-------- --------CA GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUUU GAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-CAUAGAAC C-UGAAGU-C 1501 GUGACAAUG< ac---aaugg aaguaccucc a--uuuc--- ------aacg gccaaaacca 1561 gccucuuuuu uuuuauagcc agcuuauccg cuggg(guuc aaaa-)ucc- agugggggua 1621 acccuuuaaa aaagcaagaa c--gagguca ugguguaca- aaaugugugg uguaag-cgg 1681 agaguaagag ggagcguggu uucauuguuc ucucucuuuu ccuuuuuccu ucgcggggag 1741 agagggggag gaggagggac aaagcgcucc uucuucuuc- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------gug uggucuc--- auauuuggcg 2521 -aag------ ---------- gaa-au---- -ggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCAAGGGa-g aagaua---( u-cgu-ugcc 2641 ag)------- ---------- ---u-acuu- ---------- --cuCUCGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcgaaau -gcaucugu- ggugugcaca cuuuucauuu uuugu----- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -------guu gcccaacacc ga-cc----- 3121 --ggc-cccc cgug------ -gg--uugag u]-------- ---------U GGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CUCG GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGC AUGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACAU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUu--|-- -|-guuugaa ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------a 3661 a-aguAUUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGC- -----AUUGG UGUU--(cuu 3721 a-g)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAAAcaa -accgcgcc- 3781 uuagccaaaa uuuuuu---- --uagcaagg c---cggaca gacaa----- ---------- 3841 ---------- ---------- ----gaauua a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGG---- AUAUGUG--G 3961 C|GUCA-AAA C-uuaUG-GG CUCAUucu-- ------cgau acguga---- -AAAGGGUGU 4021 U--GGUGGAU AGGGACA-GU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GGC|CC-CGA AAA--UGGAU 4141 G--ACG-CU- CAAGCCCAA| U|-ua-guga uuGCCCAU-- --UAUUCCU| (- -----)gccc uuccg-aUGU AGAU------ 4441 --GUG|GC-G UG-GA-GG-- --------U- -A-A-GGa-- c------GAA GCUG------ 4501 AuGGC(GUGA -)GCCUCAGa UGG|A-CCA| G--CCUCUA- GUGC-AGA-U CUUGGU|UG- 4561 GCGUAGCAAA -GAUCUAAC- G(gaaaacu- ---------- ---------a uuuaacaugc 4621 aa)CGUUGGA |UACUGGAGC G-GGG|AAGG AUU|UCGUGC CA-ACG(-GC ACU)CG|UAC 4681 ACGAGUUGUU |-CGGauacu gagc------ --------------- ---------- ---------- --------cc --ca-acu-- gc-agaCCGU 5581 A|CU--CAUC ACC(GCAUCA )GG|UCC-CC AAGCA(UACA A)UGCUCU-| GGUAC-||A- 5641 UA-G--AGAA AG-GUACaCU C-AGGGAAGU CGGCAA-AAU -AGAUGCGUA AG(UUCG)CA 5701 AGAAGCAUU| GGCUCUGAG- ---------- -(-----)---- -------CUC AGAACU|G(- ----c)uuac 6601 ggcGGGGAAU C|-CAACUGU AU(AAUUA)A AACAUAGGUU UGUG|A--UG C|AUC(---c 6661 aagu)GGU-- ---------- --G-UAUGUC GCAAACUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---cgugac- ----(gaga) -----uucac ----CGACGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCUU-C( 6841 CAAUU)AGAG AC|GCGCAUG AAUGGAUUAA UGAGAUUCCC UCUGU-CCCG AGUUACUAUC 6901 UA|GCGAAAC G|ACA-GUCA AG(GGAA-CG GA)CUUGAAG -G-GCU-AAG CGGGGAAAGA 6961 AGACCCUGUU G|AGUUUGAC UCC-|AGUCU G---GCU-CU |GUGCGGCGA CAUCUGAGGU 7021 GUAGUAUAGG UGGAAGC--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- -------~(- -GCAA)---- 7141 ---------G C-ACAAAUGA AA-UACCACC |ACUUGGAA- -cGUUG-CUU CACUUAu--- 7201 ------(--- --)------| --a GACAucUGCC A-GAUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-U|AUCUGU (UACACGACA AC-)GCAG-G U|G|U|CCU- AAGGC-GAGC |UCAGU-GGG 7621 -A(ACA---- GAAA)UCUCA CGUAGA|AC( A|C--AAGC) GUAAAAG-CU U-GCUUGAUU 7681 AACGAUUU(c c--aguac-- )GAAUCGAGA CUGC(-GAAA )GCAAG-|GC --CAG|CGA- 7741 UCCUUUGC-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- gaaauauagg aaau-aug(- -aACA-A--A U---)----- ---------- 7861 -----cau|a ccagag-gug uC|AGA--AU AAUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCGGCCAAGC G(UUCAU)AG CGACGUCGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AACC|UA G-CGCCG(CA -GA-)AGACG CUAA-GGGU| UGGAU(UGUU C)ACCCACUG 8041 ACAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUGGUU 8101 UUACCCUACU UAGCU-ggcagg ua-uc-gu-g agggaAGUAU GGGG(UAGUA 8281 C(GAGA)GGA AC-)UCCCAU G|CCGUGCCU CUGGUUUCUG GAG|-UUUGU C(GAAC)GGC 8341 AAGUGCUCCG A-CGCUAUC- GC-ACGG--U GGUUCUCGGC U(GAACGCCU C-U-A)AGCC 8401 AGAAGCCA-G uccc-aa-ga ccag--augc c --|------( ---)------ 8701 ---------- |--------- ---------- ---------- ---|------ ---------- 8761 ---------- ---------- -------aua ucgaaucgcc auccaaauca ucugguagcu 8821 cugccugccc ucgaaggcg- cca|-aguau c|uccaugau c--aca-aga ca---uuuau 8881 uuuug|aaac aagagaaaaa auaaauaggc cagugauaaa uauauauaua uacauaaaca 8941 ugcauauacu auguguuguu guguguuuug uuguuguguu gucucugcgc cauauauauu 9001 uauaagcaca ccucucucgc aucgugugua uguuguuguu guuguuguug uguugugugc 9061 guugugugug uguguguugu uguguuguug uugugugugu guguguguuu guauggacac 9121 acccacauuc cacacuauau uacacaccau cauacaucac auauaucaca uaauauaaau 9181 aauaacaaua auauaugugu gcacgugagc uccacggaag ggcaucccaa acgcggggag 9241 aagcggcguu ccugcag||| || // LOCUS T.cruzi.3 9262 bp RNA RNA 11-JAN-191 DEFINITION Trypanosoma cruzi. ACCESSION No information KEYWORDS No information. SOURCE Trypanosoma cruzi. ORGANISM Trypanosoma cruzi. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L19411 LOCUS TRBRR24S 1109 bp ss-rRNA RNA 12-JUN-1993 DEFINITION Trypanosoma cruzi 24S ribosomal RNA alpha subunit. ACCESSION L19411 KEYWORDS 24S ribosomal RNA; 24S ribosomal RNA alpha-subunit. SOURCE Trypanosoma cruzi (strain Peru) rRNA. ORGANISM Trypanosoma cruzi Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 1109) AUTHORS Fernandes,A.S., Nelson,K. and Beverley,S.M. TITLE Molecular evolutionary comparisons suggest multiple origins of vertebrate parasitism in trypanosomatid protozoa JOURNAL Unpublished (1993) FEATURES Location/Qualifiers rRNA <1..>1109 /product="24S ribosomal RNA alpha subunit" /gene="24S rRNA" /evidence="EXPERIMENTAL" source 1..1109 /organism="Trypanosoma cruzi" /strain="Peru" /sequenced_mol="rRNA" BASE COUNT 310 a 225 c 304 g 270 t ORIGIN BASE COUNT 310 a 225 c 304 g 270 t 8153 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~|~(~~~)~ |~~~~~(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~A GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUUU GAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-CAUAGAAC C-UGAAGU-C 1501 GUGACAAUG< ac---aaugg aaguaccucc a--uuuca-a cggccaaaa- -ccagccucu 1561 uuuuucuuac ugauauu-au au-uauauua guagc(--ag cuua-)ucc- gcugggguuu 1621 aaaauccagu ggguaacccu g--------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- -------aaa ag-caagaac gaggucaugg uguacaaaau guguguauac 2341 auaagcggag aguaagaag- gacgugguuc auuguuuuuu cucucuuuuc --ucccccuu 2401 c-gcggggag aggg-ggggg --agaggcaa agcgcuccuu -cuucuucgu guu--cucau 2461 auuu-ggcg- aa-------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ggaaaug--- gggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCAAGGGa-g aagaua---( u-cgu-ugcc 2641 ag)------- ---------- ---u-acuu- ---------- --cuCUCGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcaaauu -gcaucugu- ggugugcaca cuuaau-gaa uaauauauaa ccauauauua 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---uuuguu- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -------guu gcccaacacc ga-cc----- 3121 --ggc-cccc cgug------ -gg--uugag u]-------- ---------U GGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CUCG GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGC AUGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACAU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUu--|-- -|guuugaa- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------a 3661 a-aguAUUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGC- -----AUUGG UGUU--(cuu 3721 a-g)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAAAcaa -accgcgcc- 3781 uuagccaaaa uuuug----- --uagcaagg u---cggaca gacaa----- ---------- 3841 ---------- ---------- ----gaauua a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGG--- AUAUGUG--G 3961 C|GUCA-AAA C-uuaUG-GG CUCAUucu-- ------cgau acguga---- -AAAGGGUGU 4021 U--GGUGGAU AGGGACA-GU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GG~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.brucei 9262 bp RNA RNA 11-JAN-191 DEFINITION Trypanosoma brucei. ACCESSION No information KEYWORDS No information. SOURCE Trypanosoma brucei. ORGANISM Trypanosoma brucei. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X04986,X05682,X14553 LOCUS TRBRN28S3 1502 bp ds-DNA INV 15-MAR-1988 DEFINITION T. brucei DNA for 28S beta rRNA 3'end and small rRNAs 180, 70, 140. ACCESSION X04986 KEYWORDS 28S ribosomal RNA; 28S ribosomal RNA beta; ribosomal RNA; small ribosomal RNA. SOURCE Trypanosoma brucei. ORGANISM Trypanosoma brucei Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 1502) AUTHORS White,T.C., Rudenko,G. and Borst,P. TITLE Three small RNAs within the 10kb trypanosome rRNA transcription unit are analogous to domain VII of other eukaryotic 28S rRNAs JOURNAL Nucleic Acids Res. 14, 9471-9489 (1986) STANDARD simple automatic REFERENCE 2 (bases 1399 to 1399) AUTHORS White,T. JOURNAL Unpublished (1987) T. White STANDARD simple automatic COMMENT [1] no enum.. Data kindly reviewed (12-MAY-1987) by White T. EMBL features not translated to GenBank features: key from to description REVISION 1399 1399 g was c in [1] FEATURES Location/Qualifiers rRNA <1..211 /note="pot. 28S beta ribosomal RNA put. 3' end between pos. 211-220" rRNA 296..478 /note="180 small ribosomal RNA" rRNA 801..877 /note="70 small ribosomal RNA" rRNA 1206..1341 /note="140 small ribosomal RNA" BASE COUNT 374 a 283 c 363 g 482 t ORIGIN LOCUS TRBRRNA 4511 bp ds-DNA INV 17-JUN-1991 DEFINITION Trypanosoma brucei gene for ribosomal RNA large subunit ACCESSION X14553 KEYWORDS ribosomal DNA; ribosomal RNA; ribosomal RNA large subunit. SOURCE Trypanosoma brucei DNA. ORGANISM Trypanosoma brucei Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 4511; 1 to 4511) AUTHORS Campbell,D. JOURNAL Unpublished (1989) COMMENT See for overlapping sequence. From EMBL 27 entry TBRRNA; dated 06-FEB-1990. FEATURES Location/Qualifiers rRNA 1..4511 /note="ribosomal RNA large subunit" BASE COUNT 1100 a 998 c 1190 g 1223 t ORIGIN LOCUS TRBRRN58 1359 bp ds-DNA INV 30-SEP-1988 DEFINITION Trypanosoma brucei 5.8S ribosomal DNA and flanking regions. ACCESSION X05682 KEYWORDS 5.8S ribosomal RNA; internal transcribed spacer; ribosomal DNA; ribosomal RNA. SOURCE Trypanosoma brucei. ORGANISM Trypanosoma brucei Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 1359) AUTHORS Campbell,D.A., Kubo,K., Clark,C.G. and Boothroyd,J.C. TITLE Precise identification of cleavage sites involved in the unusual processing of trypanosome ribosomal RNA JOURNAL J. Mol. Biol. 196, 113-124 (1987) STANDARD simple automatic COMMENT *source: strain=427; see x05683 for further downstream LS1 sequence Data kindly reviewed (15-Feb-1988) by Boothroyd J. C. EMBL features not translated to GenBank features: key from to description SITE 57 398 ITSI SITE 569 1158 ITSII FEATURES Location/Qualifiers rRNA <1..56 /note="small subunit RNA" rRNA 399..568 /note="5.8S RNA" rRNA 1159..1359 /note="large subunit RNA (LS1)" BASE COUNT 377 a 234 c 308 g 440 t ORIGIN BASE COUNT 946 a 995 c 1165 g 1082 t 5074 others ORIGIN 1 |--------- ---------- ---------- -----AACGU GUCGCGAUGG AUG|ACUUGG 61 |CUUCCUA|U U|uCGUUGAA GAA|CGCA(- -GCAA-AG)U |GC-GAUAAG UGguau-|[- 121 caauugcaga a-ucauuuca u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---ugccc|A AUCUUU-GAA CGC-(aaacg )-g-c|gcau 241 gggagaagcu c(-------- ---------- ---------- -----ucuc- ---)gagcca 301 uccc-cgugc ---augccac -a-uuucuca guguc-(--- ---ga----/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------uca )--gac-cug agu-gugg-c aGG----ACC 481 AC|CCGCUAA -A--CU|UA( AGCA)UA-UU ACUCAG-C-G G-AGGAAA-- --AGAAAAC( 541 AAC-C)GU-G AU|UCUCUCA GU--cAGC(G GCGA)GCG-A A-----GAGG GAUu------ 601 ------c--- ---------- ---------- ---------- -AACUCG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----uugcc gaaucggguc ---(uuauau )---gaccuc gaacuguggc accauuuuug 781 uggccguucu ua-uagggcu gg-ugcaggc guggcggaau ucaauugcaa agcaaa--cc 841 cguugcug-- ---------- ---------- ---------- ---------- aacac-auuu 901 a----caacc cuu-c-a-u( g-(-ugag-- )u)auuga-- ---------- --------GC 961 --|C(AAA)G |AAGG-(UGU CAGC)-CCAU UA|--cauuc cuuagccacg g-----agcc 1021 uacgcgccuc cucauguu-c ggu-ccaaga ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGCACU GUU(----UG 1141 GGAA)UGCAG UGUCAA---G CCGGCA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAUUUGU-- ---------- ---------- ---------- )CUG-CCAAG GUU----AAA 1381 UA-------- --------UA GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUUU GAAA-AGUAC UUU(gg-aa- )AGAG-AGUG A-CAUAGAAC C-UGAAAU-C 1501 GUGACAACG< ac---aaugg aaguaccucc a--uuucu-u uuuuu-uacg gccagaccca 1561 accucgccgc -------gca a--uuuccuu ccggg(guuc aaca-)ucc- ggugggccuu 1621 ca--cugugc ggguuucucu uuugagguca uggggugcgu gagugggcgg aauaaa-ggg 1681 ucgguguguu gugugugggu uuuuucucuc acucucuucc uccuucccug uu-------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ------cgug cg-ucuc--- gacgcuggcg 2521 -aug------ ---------- gaa-aug--- gggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCAAGGGa-g gaguau---( guaug-ugag 2641 aa)------- ---------- ---c-ucuu- ---------- --uuCUCGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -gugugauuu uacacccgu- ggcgugcgca auuucucuuu uuugu----- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ----guuuuu gcccaacgcc gg-cc----- 3121 --ggc-cccc cgug------ -gg--cugcg c]-------- ---------G CGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CCCC GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU ACGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACGU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUu--|-- -|-gucuuua a--------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------g 3661 a-aguAUUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGC- -----AUUGG UGUU--(cuu 3721 g-u)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAAAcaa -ccca-gcc- 3781 uuaguua--- ---uuu---- --uaacaagg cuuuugggua cauaa----- ---------- 3841 ---------- ---------- ----gaauug a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGG--- AUAUGUG--G 3961 C|GUCA-AAA C-uugUG-GG CUCAUucu-- ------cgau acguga---- -AAAGGGUGU 4021 U--GGUGGAU AGGGACA-GU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GGC|CC-CGA AAA--UGGAU 4141 G--ACG-CU- UAAGCCCCA| U|gugcguga uuGCCCAU-- --UAUUCCU| (- -----)gccc ucccg-aUGU AGAC------ 4441 --GUG|GC-G UG-GG-GG-- --------u- -g-A-GGa-- c------GAA GCCG------ 4501 AuGGC(GCGA -)GCCUCGGa UGG|A-CCC| G--CCUCUA- GUGC-AGA-U CUUGGU|UG- 4561 GCGUAGCAAA -GAUCUAAC- G(gaa----- ---------- ---uauuuuu ucuuaaaugc 4621 aa)CGUUGGA |UACUGGAGC G-GGG|AAGG AUU|UCGUGC CA-ACG(-GC ACU)CG|UAC 4681 ACGAGUUGUU |-CGGucacu gagc------ --------------- ---------- ---------- -------ucc --ca-acu-- gc-agaCCGU 5581 A|CU--CAUC ACC(GCAUCA )GG|UCC-CC AAGCA(UCGA A)UGCUCU-| GGUAAc||A- 5641 UA-G--AGAA AG-GUACaCU C-AGGGAAGU CGGCAA-AAU -AGAUGCGUA AG(UUCG)CA 5701 AGAAGCAUU| GGCUCUGAG- ---------- -(-----)---- -------CUC AGAACU|G(- ----c)uuac 6601 ggcGGGGAAU C|-CAACUGU AU(AAUUA)A AACAUAGGUU UGUG|A--UG C|AUC(---c 6661 aagu)GGU-- ---------- --G-UAUGUC GCAAACUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---c------ ----(gaga) -----uucac ----CGACGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCUU-C( 6841 CAAUU)AGAG AC|GCGCAUG AAUGGAUUAA UGAGAUUCCC UCUGU-CCCG AGUUACUAUC 6901 UA|GCGAAAC G|ACA-GUCA AG(GGAA-CG GA)CUUGAAG -G-GCU-AAG CGGGGAAAGA 6961 AGACCCUGUU G|AGUUUGAC UCC-|AGUCU G---GCU-CU |GUGCGGCGA CUUUGGAGGU 7021 GUAGUAUAGG UGGAAGC--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -GCAA)---- 7141 ---------G C-UCAAAUGA AA-UACCACC |ACUCGGAA- -CGUUG-CUU CACUUAu--- 7201 ------(--- --)------| --a GACAucUGCC A-GAUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-U|AUCUGU (UACACGACA AC-)GCAG-G U|G|U|CCU- AAGGC-GAGC |UCAGU-GGG 7621 -A(ACA---- GAAA)UCUCA CGUGGA|AC( A|C--AAGC) GUAAAUG-CU U-GCUUGAUU 7681 aACGAUUU(c c--aguac-- )GAAUCGAGA CUGC(-GAAA )GCAAG-|GC --CAG|CGA- 7741 UCCUUUGc-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- gaagaacagg aaau-aug(- -aACA-A--A U---)----- ---------- 7861 -----cau|a cCAGAG-gug uC|AGA--AU AAUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCGGCCAAGC G(UUCAU)AG CGACGUCGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AACC|UA G-CGCCG(CA -GA-)AGACG CUAA-GGGU| UGGAU(UGUU C)ACCCACUG 8041 ACAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUGGUU 8101 UUACCCUACU UGGCU-ggcaGG CA-UC-gu-G AGGGAAGUAU GGGG(UAGUA 8281 C(GAGA)GGA AC-)UCCCAU G|CCGUGCCU CUGGUUUCUG GAG|-UUUGU C(GAAG)GGC 8341 AAGUGCUCCG A-CGCUAUC- GC-ACGG--U GGUUCUCGGC U(GAACGCCU C-U-A)AGCC 8401 AGAAACCA-G UCCC-aa-ga ccgG--GUGC C --|------( ---)------ 8701 --uuuugucc |cucuc(-ca aacga)ga-g uacau----g cau|gggcug gcaugagc-- 8761 -g-g-cacgc uc-ca----- -cgaccgugg ggcucgag(g ggca)cuuua cgucccgagg 8821 cgc---ugaa ----ccuug- aug|-cuugg -|--aauuuc a--u-g-cuc ag----g-ga 8881 cuuuu|---- ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.rotatori 9262 bp RNA RNA 11-JAN-191 DEFINITION Trypanosoma rotatorium. ACCESSION No information KEYWORDS No information. SOURCE Trypanosoma rotatorium. ORGANISM Trypanosoma rotatorium. REFERENCE 1 (bases 1 to 6362) AUTHORS Maslov,D.A., Lukes,J., Jirku,M. and Simpson,L. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U39582 LOCUS TRU39582 995 bp rRNA INV 26-NOV-1995 DEFINITION Trypanosoma rotatorium large subunit ribosomal RNA. ACCESSION U39582 KEYWORDS . SOURCE Trypanosoma rotatorium. ORGANISM Trypanosoma rotatorium Eukaryotae; mitochondrial eukaryotes; Euglenozoa; Kinetoplastida; Trypanosomatidae; Trypanosoma. REFERENCE 1 (bases 1 to 995) AUTHORS Maslov,D.A., Lukes,J., Jirku,M. and Simpson,L. TITLE Phylogeny of trypanosomes as inferred from the small and large subunit rRNAs: implications for the evolution of parasitism in the trypanosomatid protozoa JOURNAL Unpublished REFERENCE 2 (bases 1 to 995) AUTHORS Lukes,J. TITLE Direct Submission JOURNAL Submitted (27-OCT-1995) J. Lukes, Institute of Parasitology, Dept. of Molecular Parasitology, Branisovska 31, Ceske Budejovice, 37005, Czech Republic COMMENT NCBI gi: 1073254 FEATURES Location/Qualifiers source 1..995 /strain="B21" /organism="Trypanosoma rotatorium" /specific_host="Rana catesbeiana" rRNA 1..995 /product="large subunit ribosomal RNA" BASE COUNT 274 a 215 c 297 g 209 t ORIGIN BASE COUNT 274 a 215 c 297 g 209 t 8267 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~|~(~~~)~ |~~~~~(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ugggucuggA GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUuu gAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-CAUAGAAC C-UGAAGU-C 1501 GUGACAAUG< ac---aaugg aa--guaccu ccauuuca-a cggccaaaa- -ccagccuca 1561 ca-------- -------gca u--uu-uccg -gcgg-guuc aaa---ucc- -gu-cgggua 1621 acc-aagugc -aagaaacuu a--gagguca uggug----- aaaug----- g----g-cgg 1681 agaguaag-- ---------g ggugcugcac ggcgaaacgc ga-------- --gcgg---- 1741 ---------- -ugcu----- ---------- uucuucucc- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------gug -auccuc--g auguuggcga 2521 a--------- ---------- ggaagug--- gggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCAAGGGgag gagaua---( u-cgu-ugcc 2641 ag)------- ---------- ---u-acuu- ---------- --cuCUCGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcgaauu -gcaucugu- ggugugcaca c-----auuu -aaaa----- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -------a-u gcccaacacc ga-cc----- 3121 --ggc-cccc cgug------ -gg--uugag u]-------- ---------U GGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CCCA GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGC AUGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACGU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUu--|-- -|-guuugaa ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------a 3661 a-aguAUUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGC- -----AUUGG UGUU--(cuu 3721 a-g)--AGCA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGgccaaac aaaccuacc- 3781 uuagccaaca ---------- ----gcaagg u---cggaua gaaaagaauu a--------- 3841 ---------- ---------- ---------- a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGG--- AUAUGUG--G 3961 C|GUCAAAAC u-ua-UG-GG CUCAUucu-- ------cgau acguga---- -AAAGGGUGU 4021 U--GGUGGAU AGGGACA-GU UGGGCGGUGG CC(AUGG-AA GUC)GGCACC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GG~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (2)-Granul 9262 bp RNA RNA ~?~???? DEFINITION Granuloreticulosea. ACCESSION No information KEYWORDS No information. SOURCE Granuloreticulosea. ORGANISM Granuloreticulosea. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS G.oviformi 9262 bp RNA RNA 07-JUN-1994 DEFINITION Gromia oviformis.; LSU ribosomal RNA. ACCESSION X79511 KEYWORDS LSU ribosomal RNA. SOURCE Gromia oviformis. ORGANISM Gromia oviformis. REFERENCE 1 (bases 1 to 1507) AUTHORS Pawlowski,J., Bolivar,I., Guiard-Maffia,J. and Gouy,M. TITLE gene sequences Phylogenetic position of formainifera inferred from LSU rRNA JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1507) AUTHORS Pawlowski,J.W. TITLE Direct Submission JOURNAL Submitted (31-MAY-1994) to the EMBL/GenBank/DDBJ databases. J.W. Pawlowski, University of Geneva, Dept of Zoology & Animal Biology, 154 route de Malagnou, 1224 Chene-Bougeries, SWITZERLAND STANDARD full automatic COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X79511 NCBI gi: 498717 BASE COUNT 393 a 299 c 439 g 375 t 7756 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~(~~~~~~ ~)~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~cgaucu gaaauaag-g caag---acu 481 ac|uggcuga -a--uu|UA( AGCA)UA-ua auuaag-c-c a-aggaaa-- --aGAAACU( 541 AAC-A)AG-G AU|UCCCCUA GU---AAC(G GCGA)GUG-A A-----gcgc gaag------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ------aau- 661 -ugaaaagcg ugcguu---- ---------- cccuguugaa ugucacgcgu ugua(aucua 721 )uagaagugu uguuagcaaa ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- --ccg-acca 901 gaucuaaa-- --u-uca-u( ---uggaau- --)gugau-- ---------- --------GU 961 --|C(AUA)G |AGGG-(UGA GAAC)-CCCG UU|--uaugg gcuuggc--- ---------- 1021 -----uacgg augc------ ----gucc-- ---------- ---------- ---------- 1081 ---gacgcac uuucgaa--- ---------- --------|G AGU-CGCGUU CCU(----UG 1141 GGAU)UGGAG CGCAAA---g uuGGUG-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 u-aaacu--- ---------- ---------- ---------- )CCAuCUAAA GCU----AAA 1381 UA-------- ---------- uuugc-gAGA GACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G-gaaaGAUG -AAA-AGaac uuu(ga-aa- )agag-aguu a-aaaagucc u-ugaaau-u 1501 gcugg-aag< ag---aagcg auuugagc-- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- aagugaugu- -cgguagggu acuuucuugu gugcaccg-u ugccgauguc 1681 accgguuacg aggagacgcg aguc------ ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ----cuucgu cuggagacuu guuggcugug guguugcgag guucuguccu gccggauucg 2041 ucagaaucag uuuggagcau agacgaaagc ccguagggaa gguagagugg uuggagccuu 2101 gcguuccgau ugcuuguuac agcccugugg uuauacucgu gcucuggacu gaggccuaca 2161 gugcucgcuc ccauuccggg aguagugugg ugcuccguuu ucuugugcgu cgcguccuug 2221 gacagcaaag cugugucugg cguugugcgu uugcauugag guggcagccc aacagagcau 2281 ucgagacucu gacaaaaauu ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- gcucgaaccg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUAUAU GCGAGUAu-g -agggu---( ------guga 2641 aa)------- ---------- ---a-ccc-- ---------- ----auaaug cg(-aaa)ug 2701 a-[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 -----aggug aagg-uug-a uuu------- --g------- --uuuga--- -------cc- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 -------gag auca------ ---------- -------uau ccugucaccc uuucgggggu 3061 gaugggugcc ug---aucgg ccaacccagc cucguguugg ggaugag--- ---------- 3121 ---------- -c-------- ---------- -]-------- ---------a agaGCAUAU- 3181 -CUG-UUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AG|C-AGGGU GAAGUCAGGG 3241 (GAAA----- -----)CUCU GAU-GGAAGC UCG-AA---G CG-AUACUGA (CGUGCAAA) 3301 UCG-U-UCGU CUGACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUG CGAAGUUUCC --(CUCA)GG 3421 AUAGC-ugga -acuc--|-- --acacgcag u--------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 -----uuuau -c|agg--ua aa-gcuaaug auuagaggc- ---a-c-cug aauu--(gaa 3721 a-c)--aauu u-gga-|ccu auuc-UCAAA CUUUA-aaug |gguaag-ac --gcccggu- 3781 guugcuu-ga uuugaacccg ggccuacg-- ---------- ---------- ---------- 3841 ---------- ---------- ----aaugcg u|ag-uucuu -AGU-GGGCC -CUU-UUUG( 3901 G-UAAG)CAG AAC-GGGC-G AUGCGG(GAU -GAA)CCG-- gacgcgu--- gaguaag--g 3961 u|gcca-aag g-u--guugg cucau----- ---uua--ga ccc-caug-- -AAAGG-UGU 4021 U--gguunaU AUAGACA-GC AGGACGGUGG UC(AUGG-AA GUC)GAAAUC CG|C(UAA)G 4081 |GAGUGC(GU AAC~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~(~~ ~~~-)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- (~~~~~)~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~~(~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS A.tepida 9262 bp RNA RNA 11-JAN-191 DEFINITION Ammonia tepida. ACCESSION No information KEYWORDS No information. SOURCE Ammonia tepida. ORGANISM Ammonia tepida. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: Z30146 LOCUS AT28SRRNA 1588 bp DNA INV 04-JAN-1995 DEFINITION A.tepida gene for 28S ribosomal RNA. ACCESSION Z30146 KEYWORDS 28S ribosomal RNA. SOURCE Ammonia tepida. ORGANISM Ammonia tepida Eukaryota; Animalia; Protozoa; Granuloreticulosa; Foraminifera; Rotaliina. REFERENCE 1 (bases 1 to 1588) AUTHORS Pawlowski,J., Bolivar,I., Guiard-Maffia,J. and Gouy,M. TITLE Phylogenetic position of foraminifera inferred from LSU rRNA gene sequences JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 1588) AUTHORS Pawlowski,J. TITLE Direct Submission JOURNAL Submitted (15-FEB-1994) to the EMBL/GenBank/DDBJ databases. Manolo Gouy, Universite Lyon I, 69622 Villeurbanne, France STANDARD full automatic COMMENT NCBI gi: 619063 FEATURES Location/Qualifiers source 1..1588 /organism="Ammonia tepida" rRNA <1..>1588 /product="28S ribosomal RNA" BASE COUNT 472 a 359 c 362 g 395 t ORIGIN BASE COUNT 472 a 359 c 362 g 395 t 7674 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~(~~~~~~ ~)~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~cacau cagcucga-g ugag---aau 481 ac|GCGCUAA -A--CU|UA( AGCA)UA-UC AGUCAG-C-G Cacguaaua- auAGAAACU( 541 AAC-C)AG-G AU|UCCCUUA GU---AAC(G GCGA)GUG-A A-----CUGG GAug------ 601 -------cca auauaaaaua uguaccucgc gugcauaaau uAGCCCG|uc gauacuaucc 661 uagcguau-- ---------- ---------- ---guaccgg ucuucggguc gguacucaaa 721 uacgcgggaa uuguagcauc guaauaaaau auacagcacg cacacacaca cacugccaac 781 augcguacca cuuguaaaca cacagcguc- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- --ucc-gcgu 901 ugaagcaagu u-a-uau-c( ---cucuug- --)gauau-- ---------- --------GC 961 --|C(AUA)G |AGUG-(UGA CAGC)-CACG UU|ucacccu uaguacgc-- acacacacau 1021 acacacggcu cgugcgagug caauacguau auauucuaua accu------ ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGAGUU AUU(----UG 1141 GGAC)UAUAG CUCUAA-uag uuUGGUuG(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- --------gu 1321 gguaaugaca ---------- ---------- ---------- )CAU-CAAAG GCU----AAA 1381 UAuugguuag ucgaug--ca uauug-cGGA GACCGAUAGC AUAC-AAGUA CC(GUAA)G- 1441 G--aacGAUG -AAA-AGcac ccu(au-ug- )aguu-cacg g-cgcagacu c-ugauac-u 1501 ucugu-auc< u------ugu ccagcgccaa caacuacagu gggagugaaa gagagag-ug 1561 aaau-cgccu auauauauaa cauaugcacu acacacagua acugcaugca guca---gcg 1621 u--u------ ---------- ---------- ------agua caau----cg gacag---ag 1681 ugu------- ---------- ---------- ------cgua uauaaca--u auggc-cgcc 1741 -uaa-u---- --acauau-- ccauacaaug uauuauggcc uggcccauag uggguucgcc 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 --cg-cua-- --------ua cgc-gac--a cgacuguacg >------ACC CGU(UUUGAA 2581 AC)ACGG|AC CAAGG-AGUU CAACUGGAUU ACGAGUCg-u -cgagcaua( uauauuuucc 2641 aa)------- ------uauu uaua-cuca- ---------- -cacGGCauA GC(GAAA)GC 2701 AA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------c 2881 cuuaauccuu uauacagugc uaggucggcc gucaaa-agc ucgaccgcag cacgcgc-ug 2941 a--------- ---------- ---------- ---------- ---------- ---------- 3001 -gugaguaua --uacgugcg gaccuccgcg ucaacgcgua uacc------ ---------- 3061 ---------- ---------- ---------- ---------u gcguu--u-- ---auuc--- 3121 ac-a---g-- --gaucacuc aagc--guuc a]-------- ---------a cgaGUAUAU- 3181 CUUG-UUGAG ACCCGAAAGA U-GGUG-AAC UAUG-CUCG- GA|U-AUGGC GAAGUCAGGU 3241 (GAAA----- -----)ACUU GAU-GGAAGC UUgcguuguG CG-GAACUGA (CGUGCAAA) 3301 UCGuuaCCGC CUAACCUGAG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-ucag -ugca--|-- ---auaaaaa aaauccaaug gcguag---- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 -----cacaa -a|ggg--ua aa-gc-aaug auacgcggua ucuguggguc uuau--(uua 3721 a--)--auga ccucgg|ccu ucuc-UCAAA CUUUAaaucu |-gugcg--- ----uaacu- 3781 auuauuuaua gcguguaccu aauacuuauu guggacacag caauauaaua gc-------- 3841 ---------- ---------- ----aaugac -|----ucgu -AGU-GGGCC -AUU-UCUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGAGG(GAU UCAA)CCU-- gacguuuuaa agauaagc-g 3961 g|gcuu-aau c-au-aucug cu---cuaac cuucc---ga uaaacgcg-- -AAAGGGUAU 4021 UCCAUGUGGU GUAGACA-GC AGGACGGUGG CC(AUGG-AA GUU)GGAAUC CG|C(UAA)G 4081 |GAGUGC(GU AAC~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~(~~ ~~~-)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- (~~~~~)~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~~(~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS R.vilardeb 9262 bp RNA RNA 11-JAN-191 DEFINITION Rosalina vilardeboana. ACCESSION No information KEYWORDS No information. SOURCE Rosalina vilardeboana. ORGANISM Rosalina vilardeboana. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: Z30148 LOCUS RV28SRRNA 1807 bp DNA INV 04-JAN-1995 DEFINITION R.vilardeboana gene for 28S ribosomal RNA. ACCESSION Z30148 KEYWORDS 28S ribosomal RNA. SOURCE Rosalina vilardeboana. ORGANISM Rosalina vilardeboana Eukaryota; Animalia; Protozoa; Granuloreticulosa; Foraminifera; Rotaliina. REFERENCE 1 (bases 1 to 1807) AUTHORS Pawlowski,J., Bolivar,I., Guiard-Maffia,J. and Gouy,M. TITLE Phylogenetic position of foraminifera inferred from LSU rRNA gene sequences JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 1807) AUTHORS Pawlowski,J. TITLE Direct Submission JOURNAL Submitted (15-FEB-1994) to the EMBL/GenBank/DDBJ databases. Manolo Gouy, Universite Lyon I, 69622 Villeurbanne, France STANDARD full automatic COMMENT NCBI gi: 619510 FEATURES Location/Qualifiers source 1..1807 /organism="Rosalina vilardeboana" rRNA <1..>1807 /product="28S ribosomal RNA" BASE COUNT 532 a 384 c 416 g 474 t 1 others ORIGIN BASE COUNT 532 a 384 c 416 g 474 t 7456 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~(~~~~~~ ~)~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~cacau cagcucga-g ugag---gau 481 ac|GCGCUAA -A--CU|UA( AACA)UA-UC AGUCGG-C-G Cacguaaca- auAGAAACU( 541 AAC-C)AG-G -U|UCCCUUA GU---AAC(G GCGA)GUG-A A-----GCGG GAag-uaaug 601 cauacgauca cguaagauuc gucucgcgug uuucguagcu aAGCCCA|-- ---------- 661 ---------- -------ucg auagaauccg uucuucagug ccucggccca ggggaggaau 721 uguagcaucg aaauuuaaaa caaaucaugu uguacugucu auuacuuaca auugacuaua 781 cuacuaaccu cugguaacua ucucucucac aauuuacacu uacauuaaac acagugagcg 841 cgcgccgaag uugucguacg uacaauacgu gagcaagc-- --------au ucaugucuua 901 uacauacaau caaagacaca gcguuuagcg cuggaaagca auucguaguu uuacugcaGC 961 --|C(AUA)G |AGUG-(UGA CAGC)-CACG UU|------- ------uuaa ugguuaugca 1021 ugaauacncu gccgcguaaa cuuuguacac gcauacguau acgucauuc- --------aa 1081 uagcacagua guuuuguaau ucgugauugu ugauaccu|G AGU-CGAGUU GUU(----UG 1141 GGAC)UACAG CUCAAA-uug uuUGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- --------gu 1321 gguaaugaca ---------- ---------- ---------- )CAU-CAAAG GCU----AAA 1381 UAaugguguu uaaucacaac augcaauGGA AACCGAUAGC AAAC-AAGUA CC(GUAA)G- 1441 G--aacGAUG -AAA-AGcac ccu(uc-au- )agca-cgca u-gcuacggc a-auguga-u 1501 uuaua-uuu< acgcauuaca gcaugcaagc uccaaaggga gugaaagaga gagugaaauc 1561 gccuuacagc gaaacaacaa uacuaacuuu guauaacaca gauuaacagc acgucgcgca 1621 ucguauugau cuuaacugua ucauacagau ucacgcgucg ugcgcaauac acauuuaauc 1681 uauauuucag cgaaguacaa ucggacagag cgcuuuugcu ucaauucuuu gaagguagcg 1741 ggcuauuaug caacguauac ugcauguaug ccacgcuauu ugucuucuga caaaa----- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- cga-ggc--g caacuaucca >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUU CAACUGGAUU GCGAGUCg-u -agagu---( uauacacaau 2641 aa)------- ---------- ---a-cuca- ---------- uugcGGCGAA GC(GAAA)GC 2701 AA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ------aauu gugccaa-cu c--------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( auuuaaacca ----)----- ---------- -------gag -ugcagcacg 3061 ggcugauugu gg---acaug cgcgugaacu cguacgua-u gcuuugaucu gucauucgug 3121 acuaa-uguc aaa-gaucaa ucaa---gcc a]-------- ---------g agaGCAUAU- 3181 -UAG-UUGAG ACCCGAAAGA U-GGUG-AAC UAUG-CUCG- GA|C-AUGGU GAAGCCAGGU 3241 (GAAA----- -----)ACUU GGU-GGAAGC UUgcguuguG CG-GAACUGA (CGUGCAAA) 3301 UCGuugCCGC CUGACCUGAG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC AUCUAGUAGC UGGUUCUCUC CGAAGUUUCU --(CUCA)GG 3421 AUAGC-ucga -auua--|-- --aucaauau caguaaagag u--------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 -----aacac -a|agg--ua aa-gc-aaug agacgcggua ucuguggguc uuau--(uua 3721 a--)--auga ccucgg|ccu ucuc-UCAAA CUUUAaaucu |-gugcgaca acugucugcc 3781 uucuuuaaag cgcuguauug cauuugugau gcgcgcgcga ggugacguuu ugu------- 3841 ---------- ---------- ----aucua- u|aa-uucgu -AGU-GGGCC uAUU-UCUG( 3901 G-UAAG)CAG AGC-UGGC-G AUGAGG(GAU UCAA)CCU-- gacguucuca agauaagccg 3961 g|gcuu-aau c-au-aucug cu---ccaac cuucc---ga uaaacgcg-- -AAAGGGUGU 4021 UCCGUGUGGU GCAGACA-GC AGGACGGUGG CC(AUGG-AA GUU)GGAAUC UG|C(UAA)G 4081 |GAGUGC(GU AAC~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~(~~ ~~~-)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- (~~~~~)~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~~(~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS G.mediterr 9262 bp RNA RNA 11-JAN-191 DEFINITION Glabratella mediterranensis. ACCESSION No information KEYWORDS No information. SOURCE Glabratella mediterranensis. ORGANISM Glabratella mediterranensis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: Z30149 LOCUS GM28SRRNA 1499 bp DNA INV 04-JAN-1995 DEFINITION G.mediterranensis gene for 28S ribosomal RNA. ACCESSION Z30149 KEYWORDS 28S ribosomal RNA. SOURCE Glabratella mediterranensis. ORGANISM Glabratella mediterranensis Eukaryota; Animalia; Protozoa; Granuloreticulosa; Foraminifera; Rotaliina. REFERENCE 1 (bases 1 to 1499) AUTHORS Pawlowski,J., Bolivar,I., Guiard-Maffia,J. and Gouy,M. TITLE Phylogenetic position of foraminifera inferred from LSU rRNA gene sequences JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 1499) AUTHORS Pawlowski,J. TITLE Direct Submission JOURNAL Submitted (15-FEB-1994) to the EMBL/GenBank/DDBJ databases. Manolo Gouy, Universite Lyon I, 69622 Villeurbanne, France STANDARD full automatic COMMENT NCBI gi: 619157 FEATURES Location/Qualifiers source 1..1499 /organism="Glabratella mediterranensis" rRNA <1..>1499 /product="28S ribosomal RNA" BASE COUNT 444 a 309 c 340 g 406 t ORIGIN BASE COUNT 444 a 309 c 340 g 406 t 7763 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~(~~~~~~ ~)~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ac|GCGCUAA -A--CU|UA( AACA)UA-UC AGUCGG-C-G Cacgcaau-- --AGAAACU( 541 AAC-C)AG-G AU|UCCCUUA GU---AAC(G GCGA)GUG-A A-----GUGG aGau------ 601 ---------- ---------- ---------- -auauaaguu cAGCCCA|ac gauaaaaucu 661 augguuagcu ggcuaggcuu cugucuucca gcugccagga auuguagcau cguaauacuu 721 aaaacacaca cacuauguuu --uaaaauau a--aaaucaa uguuguaucu gacucaacgu 781 augauaucau ug-caaucua ua-cauucuu accuaaacac acagcguuu- agcg------ 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 --uggaaa-- -----gcaa- ---gucuau- ---aucau-- ---------- --------GC 961 --|C(AUA)G |AGUG-(UGA CAGC)-CACG UU|-uaccuu gguaaacu-- ---------- 1021 ---------- ----cucauu agacacgcaa uuuuugauua caagauacg- ---------- 1081 uaaaucauuc gauuuaaaaa caaacacacc uuaacccu|G AGU-CGAGUU GUU(----UG 1141 GGAC)UACAG CUCAAA-uug uuUGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- --------gu 1321 gguaaugaca ---------- ---------- ---------- )CAU-CAAAG GCU----AAA 1381 UAuugguguu uuauac--ga uugcaacGGA GACCGAUAGC AAAC-AAGUA CC(GUAA)G- 1441 G-gaacGAUG -AAA-AGcac ccu(uu-uu- )agca-cgug c-gucacucu g-uguacg-c 1501 acaag-cuc< c-----aucg ggagugaaag agagagugaa aucgccugaa cuuuuuuaaa 1561 ucaacacaca cugauuuuua auaaauucag cgaaguacaa ucggacagag ugucuuuggc 1621 ucuuuuuuga gcguggcggg cugcuaugug ucgacucaca uugcaugcuu ugcuuucauu 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- caa-gac--a uaacuauucg >------ACC CGU(UUUGAA 2581 AC)ACGG|AC CAAGG-AGUU CAACUGGAAU GCGAGUCg-u -agagu---( ------uauc 2641 aa)------- ---------- ---a-cucu- ---------- -uucGGCGAA GC(GAAA)GC 2701 AA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -----auuuu gcgcgaa-uc u--------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( uuu------- ----)----- ---------- -------aga -ugcagcgcg 3061 ggcugauaau gu---augcu acguagagcu u--------g cugugcgugc accugcuaac 3121 uucug-uugg cag-gacuua ucaa---gcu a]-------- ---------a agaGCAAUU- 3181 -UAG-UUGAG ACCCGAAAGA UcGGUG-AAC UAUG-CUCG- GA|C-AUGGU GAAGCCAGGU 3241 (GAAA----- -----)ACUU GGU-GGAAGC UUgcguuguG CG-GAACUGA (CGUGCAAA) 3301 UCGuuaCCGC CUGACCUGAG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-ucga -uaau--|-- ---auaaccg agu------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 -----aacac -a|agg--ua aaggc-aaug agacgcggua ucuguggguc uuau--(uuu 3721 a--)--auga ccucgg|ccu ucuc-UCAAA CUUUAaaucu |-gugcg-aa aacauauugu 3781 uuacuuaaaa gcauuuuuaa ugcgugaaac uauguuucau ---------- ---------- 3841 ---------- ---------- ----aucuaa c|aa-uucgu -AGU-GGGCC -AUU-UCUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGAGG(GAU UCAA)CCU-- gacguuuuca agauaagccg 3961 g|gcuu-aau c-au-aucug cu---ccaac cuucc---ga uaaacgcg-- -AAAGGGUGU 4021 UCCGUGUGGU GCAGACA-GC AGGACGGUGG CC(AUGG-AA GUU)GGAAUC CG|C(UAA)G 4081 |GAGUGC(GU AAC~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~(~~ ~~~-)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- (~~~~~)~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~~(~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Trocham.sp 9262 bp RNA RNA 11-JAN-191 DEFINITION Trochammina sp.. ACCESSION No information KEYWORDS No information. SOURCE Trochammina sp. ORGANISM Trochammina sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: Z30147 LOCUS TS28SRRNA 1748 bp DNA INV 04-JAN-1995 DEFINITION T.sp. gene for 28S ribosomal RNA. ACCESSION Z30147 KEYWORDS 28S ribosomal RNA. SOURCE Trochammina sp. ORGANISM Trochammina sp. Eukaryota; Animalia; Protozoa; Granuloreticulosa; Foraminifera; Textulariina. REFERENCE 1 (bases 1 to 1748) AUTHORS Pawlowski,J., Bolivar,I., Guiard-Maffia,J. and Gouy,M. TITLE Phylogenetic position of foraminifera inferred from LSU rRNA gene sequences JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 1748) AUTHORS Pawlowski,J. TITLE Direct Submission JOURNAL Submitted (15-FEB-1994) to the EMBL/GenBank/DDBJ databases. Manolo Gouy, Universite Lyon I, 69622 Villeurbanne, France STANDARD full automatic COMMENT NCBI gi: 619567 FEATURES Location/Qualifiers source 1..1748 /organism="Trochammina sp." rRNA <1..>1748 /product="28S ribosomal RNA" BASE COUNT 549 a 301 c 358 g 539 t 1 others ORIGIN BASE COUNT 549 a 301 c 358 g 539 t 7515 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~(~~~~~~ ~)~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~cacau cagcucga-g ugag---gau 481 ac|GCACUAA -A--CU|UA( AACA)UA-UC AGUCGG-C-G Cacggcaaca auAAAAACU( 541 AAC-C)AG-G AU|UCCCUUA GU---AAC(G GCGA)GUG-A A-----GUGG GGag---aua 601 agugaauaca ucguguaauc uuuuuuacgc guuuguagca aAGCCCG|-- ---------- 661 ---------- ---------- --ucgauaaa auccauuguu nauugauaac uucgguuauu 721 caauaacaag gaauuguagc --aucgaaaa u--aauauca uucaaguugu uauaauuuau 781 uuauacugua aa-uuauuuu ac-acacacu agugcaacaa uuauuuuugc cguuuguaau 841 uauuaaca-- ---------- ---------- ---uaaua-- --------uu uuaauaucaa 901 ccaauuga(a acacacagcg )uuuagcgcu ggaaagcaau uuuuguaguu uaucugcaGC 961 --|C(AUA)G |AGUG-(UGA CAGC)-CACG UU|---uuau ggauuaaaau auuauuauua 1021 caauuuaaca cgcauuaaua uuaauugucc aucuuauuac aguuauaaa- ---------- 1081 uuauaaacgu aauucgugaa uguugaaccu --------|G AGU-CGAGUU GUU(----UG 1141 GGAC)UACAG CUCAAA-uag auUGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- --------gu 1321 gguaaugaca ---------- ---------- ---------- )CAU-CAAAG GCU----AAA 1381 UAuugguguu uauuuu--ac augcaacGGA AACCGAUAGC AAAC-AAGUA CC(GUAA)G- 1441 G-gaacGAUG -AAA-AGcac ccu(uc-au- )agca-cgca u-gcagcgca u-uuaguc-u 1501 ucggg-cca< uuugcauuuu gcuugcaagc ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- -uccaaaggg 1681 agugaaagag agagugaaau cgccuuacag aaaauauaau uucugcuuua uaauauuuug 1741 aauauuuaca cacaauugau uaauauuauu aauuauuaug ugaagcauuc --uuuauuua 1801 uuuauucagc guaauacaau cggacag--- agcgucuuug caucuuuuug augguaacga 1861 acuauuaugu aaauauuuau uacauuguau guuuuguuau auuuaaagg- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- -----ac--g caacuauccg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUU CAACUGGAUU GCGAGUCg-u -agagu---( uuaac-acaa 2641 a-)------- ---------- ---a-cucau uauauauaua auacGGCauA GC(GAAA)GC 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ------aauc gugugau-gu aucau----- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( gcaaca---- ----)----- ---------- --gu-gauac -ugcaacaca 3061 ggcugaucau gg---auaug cgcugugucu uagauagagc guauacguaa cuuuauuuuu 3121 cgaaa-uuua uuuacgauug guua-a-gcu a]-------- ---------a agaGCACUU- 3181 -UAG-UUGAG ACCCGAAAGA U-GGUG-AAC UAUG-CUCG- GA|C-AUGGU GAAGUCAGGA 3241 (GAAA----- -----)UCUU GAU-GGAAGC UUgcguuguG CG-GAACUGA (CGUGCAAA) 3301 UCGuuaCCGC CUGACCUGUG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-ucga -auuu--|-- --auaucaug agua------ ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ------acac -a|aggg-ua aaggc-aaug agacgcggua ucuguggguc uuau--(uua 3721 a--)--auga ccucgg|ccu ucuc-UCAAA CUUUAaaucu |-gugcgauu acgcaugcuu 3781 acuuagaaug uauaaaauuu cuuauauuuu auacagugaa guugcguuua uuuauauuau 3841 ---------- ---------- ----aucaaa -|aa-uucgu -AGU-GGGCC -AUU-UCUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGAGG(GAU UCAA)CCU-- gacguuuuca agauaagccg 3961 g|gcuu-aau c-au-aucug cu---ccaac cuucc---ga uaaacgcg-- -AAAGGGUGU 4021 UCCGUGUGGU GCAGACA-GC AGGACGGUGG CC(AUGG-AA GUU)GGAAUC CG|C(UAA)G 4081 |GAGUGC(GU AAC~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~(~~ ~~~-)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- (~~~~~)~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~~(~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (2)-Micros 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS Nos.apis.1 9262 bp RNA RNA 02-JAN-1998 DEFINITION Nosema apis.; . ACCESSION U76706 KEYWORDS . SOURCE Nosema apis. ORGANISM Nosema apis. REFERENCE 1 (bases 1 to 2650) AUTHORS Rice,R.N. TITLE Direct Submission JOURNAL Submitted (30-OCT-1996) Botany and Zoology, School of Life Sciences, Australian National University, Canberra, ACT 0200, Australia STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U76706 BASE COUNT 834 a 337 c 562 g 822 t 6707 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~aguuu uauauuuGCC CACACAUGGG AUC|AAUAGG 61 |GUACCAU|A A|-CGAGGAA GAU|CGUA(- -GCGG-AA)U |AC-GAAAg- -------|[- 121 ---------- ---------- ---------- ---------- ---------- -------]-- 181 ---------- ---------- -----auu|A UUUAUC-GCA U---(----- )----|---- 241 ---------- -(-------- ---------- ---------- ---------- ---)------ 301 ---------- ---------- --------au auua--(--- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ------aua- )--uaaua-- ---------- --G----AUU 481 AC|CCUUUGA -A--CU|UA( AGCA)UA-UC AUUAAA-A-G G-AGGAGA-- --AGAAACU( 541 AAC-U)AG-G AU|UUCUUUA GU---AGC(A GCGA)GUGuA A-----CAAG AAAC------ 601 ---------- ---------- ---------- ---------- -AACCCU|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ------(--- ---)------ ---------- ---------- ---------- ---------- 841 ---------- ---------- --------ug auuguaau-- --------cc uuua--ugga 901 gcuguaaa-- --u-cau-a( u-(auuuua- )u)uucuua- ---------- ------u-UU 961 --|C(GUA)G |AGGA-(UGU -AUA)-UCCG UU|--auaaa ugagauauau a-----aaag 1021 uaauu----- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGGGCU GCU(----UG 1141 GUAG)UGCAG UUUGAA---U AUAGGU-A(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 G-AAUGAGA- ---------- ---------- ---------- )UAU-CUAAG GUU----AAA 1381 UA-------- ---------- -UAAU-GGUA CACCGAUAGC AAAU-AAGUA CU(GCGA)A- 1441 G-GAACUU-- ---------- ---(------ )--------- ---------- G-UGAAAA-U 1501 GUGUG-GGU< ua--uag-cc uua------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- (uu-uu)--- -----uaagg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGAU UAUAAUUAUA GCGAgaua-- ac-------( -------aau 2641 --)------- ---------- -------gu- ---------- ---agucguu au(uagc)uu 2701 g-[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------a 2881 u--------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ---------- ----)----- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---(------ -)-------- ---------- -]-------- ---------- -AAGUUAUA- 3181 -AUU-AUAAG ACCCGAAACA C-AGUG-AAC UAUA-CAUG- UU|C-UGGUU GAAGAUAAGC 3241 (AACA----- -----)GUUU AUU-GGAAGA CCA-ua---A UC-AUUCUGA (CGUGCAAA) 3301 UCG-A-UGAU UUAAGAUGUG UAUAGUG--G C--------- ---------- ---(GAAA-- 3361 --G)G---CC AAU-CGAACU GUGUGGUAGC UGGUUCACAG CGAAAUGUCU --(CUAA)GG 3421 ACAGC-AGUC -AU-uuu|uu a|-----gga ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ------caua -g|aug--ua gg-ac-acug ---------- ------uuau acua--(uuu 3721 a--)--uagu a-uga-|g-- -------aaa uuacggaauu |cuaugga-a -cauuguaa- 3781 au--uaa-gu uua---cgau gugu------ ---------- ---------- ---------- 3841 ---------- ---------- --aucuaaga g|uA-UGACU -AGU-GGGCA -CAU-GAUU( 3901 G-UAAG)AAU GAU-GUGC-A AAAAGG(GA- UGAA)CCU-- UAUGAAA--- CAUUAAA--U 3961 A|UUcu-a-A --Au-AG-UA Gacac----- --------ua uaccau---- -AAAUAUGAU 4021 G--AAUACAU UGAGACA-GU AGGGCGGUUG UU(AUGG-AA GUA)GAAAUC CG|C(UAA)G 4081 |AAACGU(GU UACA)AC|-- -GUACCUACC -GAAUGUAUU AUU|GU-AUA AAA--UGGAA 4141 G--AAG-Au- ua-CUACUU| U|-------- --UAUgag-- --AUGUUUC| (- -agu-)---- -auuc-AGGU AGCU------ 4441 --GUG|-CA- AU-UU-GU-- --------U- -U-g-uau-- u------GAA GUAU------ 4501 G-CAU(GUGA -)GUGUGUA- UUG|A-AGA| A--ACAAAU- GAGC-CGA-U CUUGGA|GG- 4561 CAGUAACAAU -AU------- -(auuug--- ---------- ---------- ---------- 4621 --)------- |uauaGAUAU UAGAC|UAGG GUU|uucaau ------(-ua cu-)--|-au 4681 ugaaGUGAAU |-CGG-aguu augu------ -------<-- ------(--- ----)----- 4741 ---------- ---------- ---(------ -------)-- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 -----u-aaa aacAA-AG-A AGA(UUAAUA AU-)UCUUC| -AU----uuu ac-uacg-a- 4981 --[------- ---------- ---------- ---------- -c---aag(- -gcga--)cu 5041 ua-------- ---------- ---------- ---------- ---------] ------auua 5101 ugac-----g gu----auau uu-u--uug- -ca-uaa-(g aaaaaugaa) -uuaug-|ug 5161 a-uguuu--- ---------- ---|---agc uaug--gauu ----gu(cau g--)auaag- 5221 aa-au-agc- u--------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------( --------)- ---------- -------uuu -uauau--au gcc--ugaua 5401 aaa-aaga-- -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ---------- ---------- ---------- --cg-uag-- ug-aauCCGU 5581 A|CC---uau aCC(GCAUCA )GG|UGU-CA AUGUU(uaca -)AACAaa-| uauu--||u- 5641 ua-a--aaua ac-GUAA-GU A-AGGGAAUU CGGCAA-AUU -AGAUCUGUA AC(UUUG)GG 5701 AUAAAGAUU| GGCUCUAG-- ---------- --------<- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 -------(-- ----)----- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 -(cau-g)-- ---------- ----->---- --------CU AGAACU|u(- --uua)cuau 6601 gu-aAGGAAU C|-UGACUGU UU(AUUAA)A AACAUAGCUU uuu-|----- -|-gu(---- 6661 auuu)ac--- ---------- ---------- aagAAGUG-- AAUUCUGCCC AGU|GCAUUU 6721 AU-UGUUAA- ---------- ---a(guug) u--------- ----guaaGC G|AAUGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-U( 6841 UAAUU)GGUG AC|GCGCAUG AAUGGAGCAA CGAGAUUCCU ACUGU-CCCU ACUUACAAUU 6901 UU|GUGAAAC C|ACGAAACA AG(GGAA-CG GG)CUUGUUA -U-AAAuCAG CGAGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC CUU-|AGUAU G---ucc-ua |AUGAAUAUU CGAUAUAu-u 7021 guagcg-aGG UGGGA----- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -gga-)---- 7141 ---------- ----aagugu ga-aaCCACU |AGUAUAUU- -UGAAU-AUU UGUUUAc--- 7201 ---------- ---------| --<------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- -(------)- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- ---------- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- -------->- --aau-ggau a-UAUG-GGG AG-UUUGGCU G(GGG)CGGU 7561 A-C|AGCUGU (UAAAAAGUA AC-)ACAG-C U|G|U|CCU- AAGGU-AGAU |GAAUG-AUG 7621 -G(AUG---- GUAA)CCAUC AGUUUA|UU( A|U--AAGG) GAAUAAA-UC U-GCUUUACU 7681 -UUAUAUA(g a--ugag--- )UAUAUUUAG UAGG(-GAAA )CCUUGG|CC --UUG|CGA- 7741 UCCCAAUU-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---a-cau(- ---uc-a--u u---)----- ---------- 7861 -----aug|u -AUUGG-gug uu|ugA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUA 7921 GCAGGCAAGC G(AUCAU)AG CGACUCUGCU UUUUGAUUCU UCGAUGUC|G UC-U|C|UUC 7981 UG|AACA|UC G-UAGUG(UA -UA-)UUUGA CGAA-GUGU| UGGAU(UGUU C)ACCCGgua 8041 augGGAAACG UGAGCUAGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GUaa---<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->----- gu-au-uu-u ugagUGAACU UUGA(UAGUA 8281 C(GAGA)GGA AC-)UCUAAG U|GAUGACCA Cuggu-agug cga|-uuaac u(auua)agu 8341 uau-guugcu u-agcuac-- gu-cguu--u cgauUAAGGC U(GAAAGCCU CUU-A)AGCC 8401 UGaagcgu-a gcuc-----a aaga--uaca u --|------- ---------- 8701 ----gaauga |aggug(uau gccga)ca-u uuug--aggu uac|ugcuuu uuauguguug 8761 gaguagguua au----(uuu aau------- ---------- ---------- ---------- 8821 ----)----a uuguaa---g uu-|ugauuu a|uuc--uua u--uua-gua au--uuu-ga 8881 uua--|---- ------|uaa uuuguuuauu agugag~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Nos.apis.2 9262 bp RNA RNA 27-MAR-1998 DEFINITION Nosema apis.; . ACCESSION U97150 KEYWORDS . SOURCE Nosema apis. ORGANISM Nosema apis. REFERENCE 1 (bases 1 to 4864) AUTHORS Gatehouse,H.S. and Malone,L.A. TITLE DNA Sequence for Small and Large Subunit rRNA Genes and Evidence of a Large Tandem Repeat Unit Size The Ribosomal RNA Gene Region of Nosema apis (Microspora): JOURNAL J. Invertebr. Pathol. 71, 97-105 (1998) STANDARD No information REFERENCE 2 (bases 1 to 4864) AUTHORS Gatehouse,H.S. TITLE Direct Submission JOURNAL Submitted (10-APR-1997) Horticulture and Food Research Institute of New Zealand Limited, Palmerston North Research Centre, Private Bag 11030, Palmerston North, New Zealand STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U97150 BASE COUNT 814 a 335 c 552 g 780 t 6781 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~uuuGCC CACACAUGGG AUC|AAUAGG 61 |GUACCAU|A A|-CGAGGAA GAU|CGUA(- -GCGG-AA)U |AC-GAAAg- -------|[- 121 ---------- ---------- ---------- ---------- ---------- -------]-- 181 ---------- ---------- -----auu|A UUGAUC-GAA U---(----- )----|---- 241 ---------- -(-------- ---------- ---------- ---------- ---)------ 301 ---------- ---------- --------au auua--(--- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ------aua- )--uaaua-- ---------- --G----AUU 481 AC|CCUUUGA -A--CU|UA( AGCA)UA-UC AUUAAA-A-G G-AGGAGA-- --AGAAACU( 541 AAC-U)AG-G AU|UUCUUUA GU---AGC(A GCGA)GUG-A A-----CAAG AAAC------ 601 ---------- ---------- ---------- ---------- -AACCCU|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ------(--- ---)------ ---------- ---------- ---------- ---------- 841 ---------- ---------- --------ug auuguaau-- --------cc -uua--ugga 901 gcuguaaa-- --u-cau-a( u-(auuuua- )u)uucuua- ---------- ------u-UU 961 --|C(GUA)G |AGGA-(UGU -AUA)-UCCG UU|--auaaa ugagauauau a-----aaag 1021 uaauu----- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGGGCU GCU(----UG 1141 GUAG)UGCAG UUUGAA---U AUAGGU-A(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 G-AAUGAGA- ---------- ---------- ---------- )UAU-CUAAG GUU----AAA 1381 UA-------- ---------- -UAAU-GGUA CACCGAUAGC AAAU-AAGUA CU(GCGA)A- 1441 G-GGACUU-- ---------- ---(------ )--------- ---------- G-UGAAAA-U 1501 GUGUU-GGU< ua--uag-cc uua------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- (uu-uu)--- -----uaagg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGAU UAUAAUUAUA GCGAgaua-- ac-------( -------aau 2641 --)------- ---------- -------gu- ---------- ---agucguu au(uagc)uu 2701 g-[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------a 2881 u--------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ---------- ----)----- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---(------ -)-------- ---------- -]-------- ---------- -AAGUUAUA- 3181 -AUU-AUAAG ACCCGAAACA C-AGUG-AAC UAUA-CAUG- UU|C-UGGUU GAAGAUAAGC 3241 (AACA----- -----)GUUU AUU-GGAAGA CCA-ua---A UC-AUUCUGA (CGUGCAAA) 3301 UCG-A-UGAU UUAAGAUGUG UAUAGUG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CC AAU-CGAACU GUGUGGUAGC UGGUUCACAG CGAAAUGUCU --(CUCA)GG 3421 ACAGC-AGUC -AU-uuu|uu a|-----gga ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ------caua -g|aug--ua gg-ac-acug ---------- ------uuau acua--(uuu 3721 a--)--uagu a-uga-|g-- -------aaa uuacg-aauu |cuaugga-a -cauuguaa- 3781 au--uaa-gu uua---cgau gugu------ ---------- ---------- ---------- 3841 ---------- ---------- --aucuaaga g|uA-UGACU -AGU-GGGCA -CAU-GAUU( 3901 G-UAAG)AAU GAU-GUGC-A AAAAGG(GA- UGAA)CCU-- UAUGAAA--- CAUUAAA--U 3961 A|UUcu-a-A --Au-AG-UA Gacac----- --------ua uaccau---- -AAAUAUGAU 4021 G--AAUACAU UGAGACA-GU AGGGCGGUUG UU(AUGG-AA GUA)GAAAUC CG|C(UAA)G 4081 |AAACGU(GU UACA)AC|-- -GUACCUACC -GAAUGUAUU AUU|GU-AUA AAA--UGGAA 4141 G--AAG-Au- ua-CUACUU| U|-------- --UAUgag-- --AUGUUUC| (- -agu-)---- -auuc-AGGU AGCU------ 4441 --GUG|-CA- AU-UU-GU-- --------U- -U-g-uau-- u------GAA GUAU------ 4501 G-CAU(GUGA -)GUGUGUA- UUG|A-AGA| A--ACAAAU- GAGC-CGA-U CUUGGA|GG- 4561 CAGUAACAAU -AU------- -(auuug--- ---------- ---------- ---------- 4621 --)------- |uauaGAUAU UAGAC|UAGG GUU|uucaau ------(-ua cu-)--|-au 4681 ugaaGUGAAU |-CGG-aguu augu------ -------<-- ------(--- ----)----- 4741 ---------- ---------- ---(------ -------)-- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 -----u-aaa aacAA-AG-A AGA(UUAAUA AU-)UCUUC| -AU----uuu ac-uacg-a- 4981 --[------- ---------- ---------- ---------- -c---aag(- -gcga--)cu 5041 ua-------- ---------- ---------- ---------- ---------] ------auua 5101 ugac-----g gu----auau uu-u--uug- -ca-uaa-(g aaaaaugaa) -uuaug-|ug 5161 a-uguuu--- ---------- ---|---agc uaug--gauu ----gu(cau g--)auaag- 5221 aa-au-agc- u--------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------( --------)- ---------- -------uuu -uauau--au gcc--ugaua 5401 aaa-aaga-- -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ---------- ---------- ---------- --ag-uag-- ug-aauCCGU 5581 A|CC---uau aCC(GCAUCA )GG|UGU-CA AUGUU(uaca -)AACAaa-| uauu--||u- 5641 ua-a--aaua ac-GUAA-GU A-AGGGAAUU CGGCAA-AUU -AGAUCUGUA AC(UUUG)GG 5701 AUAAAGAUU| GGCUCUAG-- ---------- --------<- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 -------(-- ----)----- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 -(cau-g)-- ---------- ----->---- --------CU AGAACU|u(- --uua)cuau 6601 gu-aAGGAAU C|-UGACUGU UU(AUUAA)A AACAUAGCUU uuu-|----- -|-gu(---- 6661 auuu)ac--- ---------- ---------- aagAAGUG-- AAUUCUGCCC AGU|GCAUUU 6721 AU-UGUUAA- ---------- ---a(guug) u--------- ----guaaGC G|AAUGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-U( 6841 UAAUU)GGUG AC|GCGCAUG AAUGGAGCAA CGAGAUUCCU ACUGU-CCCU ACUUACAAUU 6901 UU|GUGAAAC C|ACGAAACA AG(GGAA-CG GG)CUUGUUA -U-AAAuCAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UUU-|AGUAU G---ucc-ua |AUGAAUAUU CGAUAUAu-u 7021 guagcg-aGG UGGGA----- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -gga-)---- 7141 ---------- ----aagugu ga-aaCCACU |AGUAUAUU- -UGAAU-AUU UGUUUAc--- 7201 ---------- ---------| --<------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- -(------)- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- ---------- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- -------->- --aau-ggau a-UAUG-GGG AG-UUUGGCU G(GGG)CGGU 7561 A-C|AGCUGU (UAAAAAGUA AC-)ACAG-C U|G|U|CCU- AAGGU-AGAU |GAAUG-AUG 7621 -G(AUG---- GUAA)CCAUC AGUUUA|UU( A|U--AAGG) GAAUAAA-UC U-GCUUUACU 7681 -UUAUAUA(g a--ugag--- )UAUAUUUAG UAGG(-GAAA )CCUUGG|CC --UUG|CGA- 7741 UCCCAAUU-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---a-cau(- ---uc-a--u u---)----- ---------- 7861 -----aug|u -AUUGG-gug uu|ugA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUA 7921 GCAGGCAAGC G(AUCAU)AG CGACUCUGCU UUUUGAUUCU UCGAUGUC|G UC-U|C|UUC 7981 UG|AUCA|UC G-UAGUG(UA -UA-)UUUUA CGAA-GUGU| UGGAU(UGUU C)ACCCGgua 8041 augAGGAACG UGAGAUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GUga---<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->----- gu-au-au-u ugagUGAACU UUGA(UAGUA 8281 C(GAGA)GGA AC-)UCUAAG U|GAUGACCA Cuggu-ggug cga|-uuaac u(auuc)agu 8341 uau-guugcu u-agcuac-- gu-cauu--u cgauUAAGGC U(GAAAGCCU CUU-A)AGCC 8401 UGaagcgu-a gcuc-----a aaua--uaua a --|------- ---------- 8701 ----ggauga |aggug(uau accga)ca-u cuug--aggu uac|ugcuuu u-auaacuua 8761 gaguagguuu gguaua~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Nos.distri 9262 bp RNA RNA 11-JAN-191 DEFINITION Nosema distriae. ACCESSION No information KEYWORDS No information. SOURCE Nosema distriae. ORGANISM Nosema distriae. REFERENCE 1 (bases 1 to 4864) AUTHORS Baker,M.D., Vossbrinck,C.R., Maddox,J.V. and Undeen,A.H. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L28963 LOCUS NMERRLSC 248 bp rRNA RNA 08-AUG-1995 DEFINITION Nosema distriae ribosomal RNA large subunit. ACCESSION L28963 KEYWORDS ribosomal RNA large subunit. SOURCE Nosema distriae spore rRNA. ORGANISM Nosema distriae Eukaryotae; Microsporidia; Microsporea; Microsporida; Apansporoblastina; Nosematidae; Nosema. REFERENCE 1 (bases 1 to 248) AUTHORS Baker,M.D., Vossbrinck,C.R., Maddox,J.V. and Undeen,A.H. TITLE Phylogenetic relationships among Vairimorpha and Nosema species (Microspora) based on ribosomal RNA sequence data JOURNAL J. Invertebr. Pathol. 64 (2), 100-106 (1994) MEDLINE 95052762 COMMENT NCBI gi: 940259 FEATURES Location/Qualifiers source 1..248 /organism="Nosema distriae" /dev_stage="spore" /sequenced_mol="rRNA" rRNA 1..248 /partial /note="large subunit; putative" BASE COUNT 100 a 21 c 45 g 73 t 9 others ORIGIN BASE COUNT 100 a 21 c 45 g 73 t 9023 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~a g-----aaag aacu------ 601 ---------- ---------- ---------- ---------- -cauuau|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------g 781 un-aucuaua uu--cauunu ag-------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- --------ag 901 auguuaaa-- --a-guu-a- u-(uguuguc )a-uuc-a-- ---------- --------aa 961 u-|c(aua)g |auaca(uua aauu)-guag ua|--aauga ugacgauaaa ua----aaca 1021 augun----- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-aCGAUU GCU(----UG 1141 GUAG)UGCAA UUGGAA---U AUAGAU-A(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 g-aauaaaa- ---------- ---------- ---------- )UAU-CUAAA GUU----AAA 1381 UA-------- ---------- -UAAauGACA UACCGAUAGA GAAU-AAGNA CU(GCGA)A- 1441 G-GAAC---- ---------- ---(------ )--------- --------uu g-UGAAAA-U 1501 GGNAG-nnu< ua--gcuuan agna~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~(~-~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~]~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 3361 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Nos.pyraus 9262 bp RNA RNA 11-JAN-191 DEFINITION Nosema pyrausta. ACCESSION No information KEYWORDS No information. SOURCE Nosema pyrausta. ORGANISM Nosema pyrausta. REFERENCE 1 (bases 1 to 4864) AUTHORS Baker,M.D., Vossbrinck,C.R., Maddox,J.V. and Undeen,A.H. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L28968 LOCUS NMERRLSH 222 bp rRNA RNA 08-AUG-1995 DEFINITION Nosema pyrausta ribosomal RNA large subunit. ACCESSION L28968 KEYWORDS ribosomal RNA large subunit. SOURCE Nosema pyrausta spore rRNA. ORGANISM Nosema pyrausta Eukaryotae; Microsporidia; Microsporea; Microsporida; Apansporoblastina; Nosematidae; Nosema. REFERENCE 1 (bases 1 to 222) AUTHORS Baker,M.D., Vossbrinck,C.R., Maddox,J.V. and Undeen,A.H. TITLE Phylogenetic relationships among Vairimorpha and Nosema species (Microspora) based on ribosomal RNA sequence data JOURNAL J. Invertebr. Pathol. 64 (2), 100-106 (1994) MEDLINE 95052762 COMMENT NCBI gi: 940264 FEATURES Location/Qualifiers source 1..222 /organism="Nosema pyrausta" /dev_stage="spore" /sequenced_mol="rRNA" rRNA 1..222 /partial /note="large subunit; putative" BASE COUNT 84 a 22 c 42 g 71 t 3 others ORIGIN BASE COUNT 84 a 22 c 42 g 70 t 9044 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~(~~u u---)cauua uag------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- --------ag 901 auguucaa-- --a-guu-a- u-(uguuguc )a-uuc-c-- ---------- --------aa 961 u-|c(aua)g |nuaca(uuc aauu)-guag ua|--aauga ugacgauaaa ua----aacc 1021 augua----- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-aCGAUU GCU(----UG 1141 GUAG)UGCNA UUGGAA---U AUAGAU-A(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 g-aaunaaa- ---------- ---------- ---------- )UAU-CUAAA GUU----AAA 1381 UA-------- ---------- -UAAauGACA UACCGAUAGA GAAU-AAGUA CU(GCGA)A- 1441 G-GAAC---- ---------- ---(------ )--------- --------uu g-UGAAAA-U 1501 G-GUA-gua- uu--agcuua uagu~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~(~-~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~]~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 3361 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS E.cuniculi 9262 bp RNA RNA 17-AUG-1998 DEFINITION Encephalitozoon cuniculi.; 16S ribosomal RNA; 16S rRNA gene; 23S ribosomal RNA; 23S rRNA gene; 5.8S ribosomal RNA; 5.8S rRNA gene; IGS; intergenic spacer; internal transcribed spacer 1; ITS1; large subunit; small subunit. ACCESSION AJ005581 KEYWORDS 16S ribosomal RNA; 16S rRNA gene; 23S ribosomal RNA; 23S rRNA gene; 5.8S ribosomal RNA; 5.8S rRNA gene; IGS; intergenic spacer; internal transcribed spacer 1; ITS1; large subunit; small subunit. SOURCE Encephalitozoon cuniculi. ORGANISM Encephalitozoon cuniculi. REFERENCE 1 (bases 1 to 8871) AUTHORS ,G., Gouy,M., Michot,B. and Vivares,C.P. Peyretaillade,E., Biderre,C., Peyret,P., Duffieux,F., Metenier TITLE genes and a LSU rRNA reduced to the universal core Microsporidian Encephalitozoon cuniculi, a unicellular eukaryote, with a unusual chromosomal dispersion of ribosomal JOURNAL Nucleic Acids Res. 26, 3513-3520 (1998) STANDARD No information REFERENCE 2 (bases 1 to 8871) AUTHORS Peyretaillade,E. TITLE Direct Submission JOURNAL Submitted (16-APR-1998) Peyretaillade E., LBCP UPESA CNRS 6023, Laboratoire de Protistologie Mol. et Cell., Universite Blaise Pascal Clermont Ferrand II, 63177 Aubiere cedex, FRANCE STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AJ005581 BASE COUNT 551 a 469 c 868 g 618 t 6756 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~GUUUCUC UGUUCACGGG AUu|GAUUGG 61 |CAUUAGC|G G|-CGAUGAA GGA|CGUG(- -CAGG-AG)G |AC-GAUAug c-guug-|[- 121 uuguug---- ---------- ---------- ---------- ---------- -------]-- 181 ---------- ---------- ---ugac-|g gugucu-gaa uu--(----- )----|---- 241 ---------- -(-------- ---------- ---------- ---------- ---)------ 301 ---------- ---------- --------gu gugc--(--- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ------ggu- )--gugcac- ---------- --G----GGG 481 AC|CCCUUGG -A--CU|UA( AGCA)UA-UC AGUAAA-G-G G-AGGAGA-- --AGAAACC( 541 AAA-U)GG-G AU|UGCCUGA GU---AGC(G GCGA)GUG-A A-----AUGG CAUG------ 601 ---------- ---------- ---------- ---------- -AGCCUG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ugugguaacu gc-guuuggc g--------- ---------- ---------- ---------- 841 ---------- -gg------- ---------- ---uugug-- --------uu ugugg-cagc 901 agcggcga-- --g-ugc-g( a-(uugaaa- )u)cgg-a-- ---------- --------ug 961 --|C(GGA)G |AGGG-(CGA UGUG)-CCUG UA|-ggcgcg gcggcuuuuu u-----ugu- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGUGUU GCU(----UG 1141 GUAG)UGCAG CGCGAA---u g-CGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 G-UGGAUG-- ---------- ---------- ---------- )CAC-CGAAG GCU----AAA 1381 UA-------- ---------- -UGGC-UGAU GACCGAUAGC GGAU-AAGUA GA(GUGA)U- 1441 U-GAAGU--- ---------- ---(------ )--------- ---------- G-UGAAAA-G 1501 GAGGA-uga< ug----agaa augaaaguga auggagugaa ugggggaugu uccc------ 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- >------GCC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGAC GACGGCAGGA UUGU------ uuucc----( -------gag 2641 a-)------- ---------- ---g-ggga- ---------- ---------- ---------- 2701 --[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- -]-------- ---------- -UGGAUGCU- 3181 -GCG-GUCGG ACCCGAAAGA U-GGUG-AGC UAUG-UGUG- UG|U-UGAUU GAAGGGAUGC 3241 (GAAA----- -----)GUGU UCU-GGAGGA UCU-AA---G CC-GUUCUGA (CGUGCAAC) 3301 UCG-A-UGGC AUGACAUGUG CAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CC AAA-CGAACC AUCUGGUAGC UGGUUCCCUC UGAAAUGUCU --(CUCA)GG 3421 ACAGC-ggcg -ac----|-- -|-------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ------gggg -a|gug--u- aa-gauguug uaaagca--- ---------- cuaa--(ugc 3721 gc-)--uugc g-----|--- -----uuaaa cuuugaagau |gucuuu--- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- -----uaagu g|ug-uugcc -AGU-GGGCA -UAC-UGUG( 3901 G-UAAG)CAU GGU-GUGC-G AGAAGG(GA- UGAA)CCU-- UUAAGCG--- GGCUAag--g 3961 a|gucuuaug --c--aa-gg uga------- ---------- ----gu---- -GAAUCCGGC 4021 G--GCCUGAU UUUGACA-GU UGGACGGUGG CC(AUGG-AG GUU)GGCAUC CG|C(UAA)G 4081 |AAACGU(GU UGCA)AC|-- -GUACCUACC -GAAUUGGGC GGC|GG-AGA AAA--UGGAA 4141 G---gg-au- u--gaauug| c|-------- --auuccg-- --augccug| (- ggagu)---- -aucu-GAGU AAGG------ 4441 --GGG|-CG- GU-AU-CG-- --------u- -u-c-ugc-- u------GAA GGUC------ 4501 C-UGC(GUGA -)GCGGGGG- UGG|A-GGG| G--CGAUAU- GUGC-AGA-U CUUGGU|AG- 4561 CAGUAACAA- -ggaaaug-- -(auuug--- ---------- ---------- ---------- 4621 --)--cg--- |cugu----- G-GAC|GAGG GUU|cccug- ------(-ug ugg)--|--c 4681 agggGUGAAU |-cga-cugu ggau------ -------<-- ------(--- ----)----- 4741 ---------- ---------- ---(------ -------)-- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ---------- acGGA-GG-U GCA(UUGAUA GU-)UGUGU| -GU----auu gc-ggcu-g- 4981 --[------- ---------- ---------- ---------- -g---gag(- -gcga--)cu 5041 ug-------- ---------- ---------- ---------- ---------] ------gcug 5101 ugac-----g ga----uggg gg-c-ggccc ugu-ccag(g auagcagaa) cuggaug|-- 5161 --cuguc--- ---------- ---|---ugc ugcg--gauu ----gu(uau g--)augcg- 5221 aa-gc-agc- g--------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------( --------)- ------a--u uguggg---c -gagcc--ug uuc--cgaug 5401 aaa-aaga-- -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ---------- ---------- ---------- --gg-cug-- cu-uugUCGU 5581 A|CC---uag aCC(GCAUCU )GG|UGU-CC ACUGU(UUGC C)GCGGaa-| GUGU--||u- 5641 uu-g--ugcA ag-GGCC-GU A-AGGGAAGU CGGCAA-GAU -UGAUGUGUA AC(UUCG)GG 5701 AGAAGGAUU| GGCUCUAG-- ---------- --------<- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 -(cgu-g)-- ---------- ----->---- --------CU AGAACU|g(- --uuu)-guu 6601 gu-gGGGAAU C|-UGACUGU UU(ACUAA)A AACAUAGCUU ugu-|----- -|-gu(---- 6661 gugg)ac--- ---------- ---------- gcaAAGUG-- AAUUCUGCCC AGU|GCACUU 6721 UU-AGUUA-- -----cggcc -----ugug- -----uggg- ----cuaaGC G|AGUGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-G( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAGCAA CGAGAUUCCC ACUGU-CCCU ACGGCCUGUC 6901 UU|GUGAACC U|aca-gCCA AG(GGAA-CG GG)CUUGGGC -U-GAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGCAU G---ugu-ga |AGUGCUGGG UGUGGGca-u 7021 gcagcg-aGG UGGGga---- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -----)---- 7141 ---------- ---ugagugc ga-uaCCACU |AUGUCUUC- -CGCCC-AGU GCUUUG---- 7201 ---------- ---------| --<------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- ---------- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- -------->- --ugg-augg a-UGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|GACUGC (UAAAGACUA AC-)GCAG-A C|G|U|CCU- AAGGC-GGGC |UCAGC-GGG 7621 -G(AAG---- GAAA)CCACG CGUGGA|GC( A|C--AAGG) GCACAAG-CC U-GCUUGAGA 7681 -CUGUUCC(u a--u-ugc-- )GGGACUGUU UGGG(gGAAA )CCCUGG|CC --UAG|AGA- 7741 UCCCAUGU-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --cc-uau(- ---ug-u--g c---)----- ---------- 7861 ----gugg|g ACAUGG-gug aC|aGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUA 7921 GCAGCCGAGC G(ACCAU)AG CGACGCUGCU UUUUGAUUCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UC G-CGAAG(CA -GA-)GAUUG CGAA-GUGU| UGGAU(UGUU C)ACCCAcca 8041 acaGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GUGU---<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->----- gg-ac-ug-u gcagCAGAUC UUGA(UAGUA 8281 C(GAGA)GGA AC-)UCUUGA U|UGCGACCU Cuggu-ggag cgg|-cgugc c(ugcu)ggc 8341 --u-gcugcg g-agcuac-- gu-cggg--a guauaauGGC U(GAAGGCCU C-U-A)AGCC 8401 UGaagacc-g acugc----- gcgg--ugug u<-------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- -guggcggaa 8641 gacgaccgcu gu-gug-ugc a-agcu-gug c--------> --|------- ---------- 8701 ----ggaugg |aggag(gau uccga)ca-u uuug--aggc ugu|gcauuu gcgcgagugu 8761 guguggagag cucuua(uug cac------- ---------- ---------- ---------- 8821 ----)----u gugucu---u cug|-ccccu u|cugcuu~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS E.hellem 9262 bp RNA RNA 11-JAN-191 DEFINITION Encephalitozoon hellem. ACCESSION No information KEYWORDS No information. SOURCE Encephalitozoon hellem. ORGANISM Encephalitozoon hellem. REFERENCE 1 (bases 1 to 8871) AUTHORS Vossbrinck,C.R., Baker,M.D., Didier,E.S., DeBrunner-Vossbrinck,B.A. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L13331 LOCUS EZORGDNA 724 bp DNA INV 02-AUG-1993 DEFINITION Encephalitozoon hellem small ribosomal RNA, 3'end; non-transcribed spacer; large ribosomal RNA, 5'end. ACCESSION L13331 KEYWORDS large ribosomal RNA; nontranscribed spacer; small ribosomal RNA. SOURCE Encephalitozoon hellem DNA. ORGANISM Encephalitozoon hellem Eukaryota; Animalia; Protozoa; Microspora; Haplophasea; Glugeida; Encephalitozoonidae. REFERENCE 1 (bases 1 to 724) AUTHORS Vossbrinck,C.R., Baker,M.D., Didier,E.S., DeBrunner-Vossbrinck,B.A. and Shadduck,J.A. TITLE Ribosomal DNA sequences of Encephalitozoon hellem and Encephalitozoon cuniculi: species identification and phylogenetic construction JOURNAL J. Eukaryot. Microbiol. 40, 354-362 (1993) MEDLINE 93284247 COMMENT NCBI gi: 290700 FEATURES Location/Qualifiers source 1..724 /organism="Encephalitozoon hellem" /cell_type="spore" /sequenced_mol="DNA" rRNA <1..219 /standard_name="small subunit ribosomal RNA" misc_feature 220..265 /standard_name="non-trascribed spacer" rRNA 266..>724 /standard_name="large subunit ribosomal RNA" BASE COUNT 184 a 91 c 215 g 233 t 1 others ORIGIN BASE COUNT 119 a 51 c 146 g 142 t 8804 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~UUUCUC UAUCCAUGGG AUU|GAUUGG 61 |CAUUAUC|U G|-CGAUGAA GGA|cgug(- -cugg-ag)g |ac-gauaug c-cguu-|[- 121 uuuuuu---- ---------- ---------- ---------- ---------- -------]-- 181 ---------- ---------- ---agcg-|g augucu-gaa uu--(----- )----|---- 241 ---------- -(-------- ---------- ---------- ---------- ---)------ 301 ---------- ---------- --------ag gugu--(--- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -----uugu- )--gcgccu- ---------- --G----UGG 481 AC|CCCUUUG -A--CU|UA( AGCA)UA-UU ACUAAA-G-G G-AGGAGN-- --AGAAACU( 541 AAA-U)AG-G AU|UAUCUGA GU---AGC(G GCGA)GUG-A A-----AGGA UAUG------ 601 ---------- ---------- ---------- ---------- -AGCCUG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ugugguaauc ac-gugugug a--------- ---------- ---------- ---------- 841 ---------- guu------- ---------- ---gugaa-- --------uu aggau-gacg 901 augcugaggc --a-cgg-a( u-(ugga--- )a)ucugu-- ---------- -------uuu 961 --|c(uua)g |gggg-(uga uagg)-ccug ua|--agugu ugucuuu-uu u-----ugug 1021 au-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGGGUU GUU(----UG 1141 GUAG)UGCAG CCUGAA---U GUGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 G-UAUGUG-- ---------- ---------- ---------- )CAU-CCAAG GCU----AAA 1381 UA-------- ---------- UGUGA-UGAU GACCGAUAGC GAAU-AAGUA GA(GUGA)U- 1441 U-GAAG---- ---------- ---(------ )--------- ---------u g-ugaaaa-g 1501 auuaa-uga< ug---agaaa ugaaaaugga uugaguga-g auggg~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~(~-~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~]~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 3361 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Vai.ephist 9262 bp RNA RNA 11-JAN-191 DEFINITION Vairimorpha ephistiae. ACCESSION No information KEYWORDS No information. SOURCE Vairimorpha ephistiae. ORGANISM Vairimorpha ephistiae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L28972 LOCUS VAIRRLSC 267 bp rRNA RNA 09-AUG-1995 DEFINITION Vairimorpha ephistiae ribosomal RNA large subunit. ACCESSION L28972 KEYWORDS ribosomal RNA large subunit. SOURCE Vairimorpha ephistiae spore rRNA. ORGANISM Vairimorpha ephistiae Eukaryotae; Microsporidia; Microsporea; Microsporida; Pansporablastina; Burenellidae; Vairimorpha. REFERENCE 1 (bases 1 to 267) AUTHORS Baker,M.D., Vossbrinck,C.R., Maddox,J.V. and Undeen,A.H. TITLE Phylogenetic relationships among Vairimorpha and Nosema species (Microspora) based on ribosomal RNA sequence data JOURNAL J. Invertebr. Pathol. 64 (2), 100-106 (1994) MEDLINE 95052762 COMMENT NCBI gi: 940321 FEATURES Location/Qualifiers source 1..267 /organism="Vairimorpha ephistiae" /dev_stage="spore" /sequenced_mol="rRNA" rRNA 1..267 /partial /note="large subunit; putative" BASE COUNT 92 a 25 c 54 g 93 t 3 others ORIGIN BASE COUNT 92 a 25 c 54 g 92 t 8999 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~u|uucuuua gu---agc(a gcga)gug-a a-----caag aaau------ 601 ---------- ---------- ---------- ---------- -aacccu|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------c 781 ca-uug(uaa uccu)uaauu gg-------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- --------ag 901 -uuguaaa-- --u-ggu-u- u-(auucua- )u-uuauua- ---------- --------ua 961 uu|u(aua)g |agaa-(uau uaua)-uucg uu|--auua- auagaauaga au----aaug 1021 uc-uu----- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-aGAGCU GCU(----UG 1141 GUAG)UGCAG UUUGAA---U AAAGGU-A(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 g-aaugaaa- ---------- ---------- ---------- )UAU-CUAAG GUU----AAA 1381 UA-------- ---------- -UAAu-GGUA UACCGAUAGA AAAU-AAGUA CU(GCGA)A- 1441 G-GAAC---- ---------- ---(------ )--------- --------uu g-UGAAAA-U 1501 GUGUG-gng- uu--uagccn nauu~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~(~-~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~]~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 3361 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Vai.hetero 9262 bp RNA RNA 11-JAN-191 DEFINITION Vairimorpha heterosporum. ACCESSION No information KEYWORDS No information. SOURCE Vairimorpha heterosporum. ORGANISM Vairimorpha heterosporum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L28973 LOCUS VAIRRLSD 338 bp rRNA RNA 09-AUG-1995 DEFINITION Vairimorpha heterosporum ribosomal RNA large subunit. ACCESSION L28973 KEYWORDS ribosomal RNA large subunit. SOURCE Vairimorpha heterosporum spore rRNA. ORGANISM Vairimorpha heterosporum Eukaryotae; Microsporidia; Microsporea; Microsporida; Pansporablastina; Burenellidae; Vairimorpha. REFERENCE 1 (bases 1 to 338) AUTHORS Baker,M.D., Vossbrinck,C.R., Maddox,J.V. and Undeen,A.H. TITLE Phylogenetic relationships among Vairimorpha and Nosema species (Microspora) based on ribosomal RNA sequence data JOURNAL J. Invertebr. Pathol. 64 (2), 100-106 (1994) MEDLINE 95052762 COMMENT NCBI gi: 940322 FEATURES Location/Qualifiers source 1..338 /organism="Vairimorpha heterosporum" /dev_stage="spore" /sequenced_mol="rRNA" rRNA 1..338 /partial /note="large subunit; putative" BASE COUNT 123 a 33 c 67 g 114 t 1 others ORIGIN BASE COUNT 123 a 33 c 67 g 113 t 8926 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~uu--(--- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ------uau- )--aauguau u--------- --ga---uaa 481 cc|cuuugaa -c--au|ua( agcg)ua-uc guuaaa-a-g g-aggaaa-- --agaaacu( 541 aac-u)ag-g au|uucuuua gu---agc(a gcga)gug-a a-----caag aaau------ 601 ---------- ---------- ---------- ---------- -aacccu|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------c 781 ca-uug(uaa uccu)uaauu gg-------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- --------ag 901 -uuguaaa-- --u-ggu-u- u-(auucua- )u-unauua- ---------- --------ua 961 uu|u(aua)g |agaa-(uau uaua)-uucg uu|--auua- auagaauaga au----aaug 1021 uacuu----- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-aGAGCU GCU(----UG 1141 GUAG)UGCAG UUUGAA---U AAAGGU-A(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 g-aaugaaa- ---------- ---------- ---------- )UAU-CUAAG GUU----AAA 1381 UA-------- ---------- -UAAu-GGUA UACCGAUAGA AAAU-AAGUA CU(GCGA)A- 1441 G-GAAC---- ---------- ---(------ )--------- --------uu g-UGAAAA-U 1501 GUGUG-gag- uu--uagccu uauu~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~(~-~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~]~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 3361 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Vai.lymant 9262 bp RNA RNA 11-JAN-191 DEFINITION Vairimorpha lymantriae. ACCESSION No information KEYWORDS No information. SOURCE Vairimorpha lymantriae. ORGANISM Vairimorpha lymantriae. REFERENCE 1 (bases 1 to 8871) AUTHORS Baker,M.D., Vossbrinck,C.R., Maddox,J.V. and Undeen,A.H. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L28974 LOCUS VAIRRLSE 339 bp rRNA RNA 09-AUG-1995 DEFINITION Vairimorpha lymantriae ribosomal RNA large subunit. ACCESSION L28974 KEYWORDS ribosomal RNA large subunit. SOURCE Vairimorpha lymantriae spore rRNA. ORGANISM Vairimorpha lymantriae Eukaryotae; Microsporidia; Microsporea; Microsporida; Pansporablastina; Burenellidae; Vairimorpha. REFERENCE 1 (bases 1 to 339) AUTHORS Baker,M.D., Vossbrinck,C.R., Maddox,J.V. and Undeen,A.H. TITLE Phylogenetic relationships among Vairimorpha and Nosema species (Microspora) based on ribosomal RNA sequence data JOURNAL J. Invertebr. Pathol. 64 (2), 100-106 (1994) MEDLINE 95052762 COMMENT NCBI gi: 940323 FEATURES Location/Qualifiers source 1..339 /organism="Vairimorpha lymantriae" /dev_stage="spore" /sequenced_mol="rRNA" rRNA 1..339 /partial /note="large subunit; putative" /product="Ribosomal RNA" BASE COUNT 117 a 36 c 63 g 116 t 7 others ORIGIN BASE COUNT 117 a 36 c 63 g 115 t 8931 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~aauauau uuau---aua uug----aua 481 uc|ccuuu-g -a--cu|ua( agca)ua-uc auuaaa-a-g g-aggaaa-- --agaaacu( 541 aac-u)ag-g au|uucuuua gu---agc(g gcga)gug-a a-----caag aauc------ 601 ---------- ---------- ---------- ---------- -aacccu|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------u 781 ga-uug(uaa uccu)uaaau gg-------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- --------ag 901 -auguaaa-- --u-cnu-u- u-(auucua- )u-uauuua- ---------- --------ua 961 u-|c(aua)g |agaa-(uuu uaaa)-uucg uu|--acuug auagaauaga au----nauu 1021 ucuuu----- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-aGGGCN NCU(----UG 1141 GUAG)UGCAG UUUGAA---U ACAGGU-A(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 g-aaugaga- ---------- ---------- ---------- )UAU-CUAAG GUU----AAA 1381 UA-------- ---------- -UAAu-GGUA UACCGAUAGC AAAU-AAGUA CU(GCGA)A- 1441 G-GAAU---- ---------- ---(------ )--------- --------uu g-UGAAAA-U 1501 GUGUN-nnu- gu--uagccu uauu~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~(~-~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~]~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 3361 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Vair.sp.SA 9262 bp RNA RNA 11-JAN-191 DEFINITION Vairimorpha sp.. ACCESSION No information KEYWORDS No information. SOURCE Vairimorpha sp. ORGANISM Vairimorpha sp. REFERENCE 1 (bases 1 to 8871) AUTHORS Baker,M.D., Vossbrinck,C.R., Maddox,J.V. and Undeen,A.H. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L28970 LOCUS VAIRRLSA 318 bp rRNA RNA 09-AUG-1995 DEFINITION Vairimorpha sp. ribosomal RNA large subunit. ACCESSION L28970 KEYWORDS ribosomal RNA large subunit. SOURCE Vairimorpha sp spore rRNA. ORGANISM Vairimorpha sp. Eukaryotae; Microsporidia; Microsporea; Microsporida; Pansporablastina; Burenellidae; Vairimorpha. REFERENCE 1 (bases 1 to 318) AUTHORS Baker,M.D., Vossbrinck,C.R., Maddox,J.V. and Undeen,A.H. TITLE Phylogenetic relationships among Vairimorpha and Nosema species (Microspora) based on ribosomal RNA sequence data JOURNAL J. Invertebr. Pathol. 64 (2), 100-106 (1994) MEDLINE 95052762 COMMENT NCBI gi: 940319 FEATURES Location/Qualifiers source 1..318 /organism="Vairimorpha sp." /dev_stage="spore" /sequenced_mol="rRNA" rRNA 1..318 /partial /note="large subunit; putative" BASE COUNT 111 a 36 c 61 g 101 t 9 others ORIGIN BASE COUNT 111 a 36 c 61 g 101 t 8953 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~c|ccuuuga -a--cu|ua( agca)ua-uc auuaaa-a-g g-aggaaa-- --agaaacu( 541 aac-u)ag-g au|uucuuua gu---agc(g gcga)gug-a a-----caag aauc------ 601 ---------- ---------- ---------- ---------- -aacccu|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------u 781 ga-uug(uaa uccu)uaaau gg-------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- --------ag 901 -auguaaa-- --u-cau-u- u-(auucua- )u-uauuua- ---------- --------ua 961 u-|c(aua)g |agaa-(uuu uaaa)-uucg uu|--acuug auagaauaga au----aauu 1021 ucuuu----- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-aGGGCN NCU(----UG 1141 GUAG)UGCAG UUUGAA---U ACAGGU-A(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 g-aaugaga- ---------- ---------- ---------- )UAU-CUAAG GUU----AAA 1381 UA-------- ---------- -UAAu-GGUA UACCGAUAGC AAAU-AAGUA CU(GCGA)A- 1441 G-GAAU---- ---------- ---(------ )--------- --------uu g-UGAAAA-U 1501 GUGNN-nnn- nu--uagccu nauu~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~(~-~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~]~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 3361 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Vair.sp.SB 9262 bp RNA RNA 11-JAN-191 DEFINITION Vairimorpha sp.. ACCESSION No information KEYWORDS No information. SOURCE Vairimorpha sp. ORGANISM Vairimorpha sp. REFERENCE 1 (bases 1 to 8871) AUTHORS Baker,M.D., Vossbrinck,C.R., Maddox,J.V. and Undeen,A.H. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L28971 LOCUS VAIRRLSB 337 bp rRNA RNA 09-AUG-1995 DEFINITION Vairimorpha sp. ribosomal RNA large subunit. ACCESSION L28971 KEYWORDS ribosomal RNA large subunit. SOURCE Vairimorpha sp spore rRNA. ORGANISM Vairimorpha sp. Eukaryotae; Microsporidia; Microsporea; Microsporida; Pansporablastina; Burenellidae; Vairimorpha. REFERENCE 1 (bases 1 to 337) AUTHORS Baker,M.D., Vossbrinck,C.R., Maddox,J.V. and Undeen,A.H. TITLE Phylogenetic relationships among Vairimorpha and Nosema species (Microspora) based on ribosomal RNA sequence data JOURNAL J. Invertebr. Pathol. 64 (2), 100-106 (1994) MEDLINE 95052762 COMMENT NCBI gi: 940320 FEATURES Location/Qualifiers source 1..337 /organism="Vairimorpha sp." /dev_stage="spore" /sequenced_mol="rRNA" rRNA 1..337 /partial /note="large subunit; putative" BASE COUNT 124 a 33 c 64 g 104 t 12 others ORIGIN BASE COUNT 124 a 33 c 64 g 104 t 8937 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~aauauau uuauaaugua uug----aua 481 ac|ccuuuga -a--cu|ua( agca)na-uc uuuaaa-a-g g-aggaaa-- --agaaacu( 541 nac-u)ng-g au|uucuuua gu---agc(a gcga)gug-a a-----caag aaau------ 601 ---------- ---------- ---------- ---------- -aacccu|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------c 781 ca-uug(uaa uccu)uaauu gg-------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- --------ag 901 -uugunaa-- --u-ggu-u- u-(auucun- )u-unauua- ---------- --------ua 961 uu|u(aua)g |agaa-(uau uaua)-uucg uu|--auua- auagaauaga au----aaug 1021 uacuu----- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-aGAGCU GCU(----UG 1141 GUAG)UGCAG UUUGAA---U AAAGGN-A(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 g-aangaaa- ---------- ---------- ---------- )UAU-CUAAG GUU----AAA 1381 UA-------- ---------- -UAAu-GGUA UACCGAUAGA AAAU-AAGUA CU(GCGA)A- 1441 G-GAAC---- ---------- ---(------ )--------- --------uu g-UGAAAA-U 1501 GNGAN-nag- ng--aagcc. ....~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~(~-~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~]~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 3361 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Vair.sp.SF 9262 bp RNA RNA 11-JAN-191 DEFINITION Vairimorpha necatrix. ACCESSION No information KEYWORDS No information. SOURCE Vairimorpha necatrix. ORGANISM Vairimorpha necatrix. REFERENCE 1 (bases 1 to 8871) AUTHORS Baker,M.D., Vossbrinck,C.R., Maddox,J.V. and Undeen,A.H. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L28975 LOCUS VAIRRLSF 341 bp rRNA RNA 09-AUG-1995 DEFINITION Vairimorpha necatrix ribosomal RNA large subunit. ACCESSION L28975 KEYWORDS ribosomal RNA large subunit. SOURCE Vairimorpha necatrix spore rRNA. ORGANISM Vairimorpha necatrix Eukaryotae; Microsporidia; Microsporea; Microsporida; Pansporablastina; Burenellidae; Vairimorpha. REFERENCE 1 (bases 1 to 341) AUTHORS Baker,M.D., Vossbrinck,C.R., Maddox,J.V. and Undeen,A.H. TITLE Phylogenetic relationships among Vairimorpha and Nosema species (Microspora) based on ribosomal RNA sequence data JOURNAL J. Invertebr. Pathol. 64 (2), 100-106 (1994) MEDLINE 95052762 COMMENT NCBI gi: 940324 FEATURES Location/Qualifiers source 1..341 /organism="Vairimorpha necatrix" /dev_stage="spore" /sequenced_mol="rRNA" rRNA 1..341 /partial /note="large subunit; putative" BASE COUNT 116 a 33 c 66 g 121 t 5 others ORIGIN BASE COUNT 116 a 33 c 66 g 120 t 8927 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~aauauau uuauaaugua uug----auu 481 ac|ccuuuga -a--cu|ua( agca)ua-uc uuunaa-a-g g-aggaaa-- ---gaaacu( 541 uac-u)ug-g au|uucuuua gu---agc(a gcga)gug-a a-----cuag aaau------ 601 ---------- ---------- ---------- ---------- -uacccu|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------c 781 cn-uug(uaa uccu)uaauu gg-------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- --------ag 901 -nuguaaa-- --u-ggu-u- u-(auucua- )u-unauuau ---------- -------uu- 961 --|u(aua)g |agaa-(uau uaua)-uucg uu|--auua- auagaauaga au----aaug 1021 uacuu----- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-aGAGCU GCU(----UG 1141 GUNG)UGCAG UUUGAA---U AAAGGU-A(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 g-aaugaaa- ---------- ---------- ---------- )UAU-CUAAG GUU----AAA 1381 UA-------- ---------- -UAAu-GGUA UACCGAUGGA AAAU-AAGUA CU(GCGA)A- 1441 G-GAAC---- ---------- ---(------ )--------- --------uu g-UGAAAA-U 1501 GUGUG-gag- uu--uagccu uauu~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~(~-~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~]~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 3361 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Vair.sp.SG 9262 bp RNA RNA 11-JAN-191 DEFINITION Vairimorpha sp.. ACCESSION No information KEYWORDS No information. SOURCE Vairimorpha sp. ORGANISM Vairimorpha sp. REFERENCE 1 (bases 1 to 8871) AUTHORS Baker,M.D., Vossbrinck,C.R., Maddox,J.V. and Undeen,A.H. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L28976 LOCUS VAIRRLSG 339 bp rRNA RNA 09-AUG-1995 DEFINITION Vairimorpha sp. ribosomal RNA large subunit. ACCESSION L28976 KEYWORDS ribosomal RNA large subunit. SOURCE Vairimorpha sp spore rRNA. ORGANISM Vairimorpha sp. Eukaryotae; Microsporidia; Microsporea; Microsporida; Pansporablastina; Burenellidae; Vairimorpha. REFERENCE 1 (bases 1 to 339) AUTHORS Baker,M.D., Vossbrinck,C.R., Maddox,J.V. and Undeen,A.H. TITLE Phylogenetic relationships among Vairimorpha and Nosema species (Microspora) based on ribosomal RNA sequence data JOURNAL J. Invertebr. Pathol. 64 (2), 100-106 (1994) MEDLINE 95052762 COMMENT NCBI gi: 940325 FEATURES Location/Qualifiers source 1..339 /organism="Vairimorpha sp." /dev_stage="spore" /sequenced_mol="rRNA" rRNA 1..339 /partial /note="large subunit; putative" BASE COUNT 120 a 36 c 67 g 115 t 1 others ORIGIN BASE COUNT 120 a 36 c 67 g 115 t 8924 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~aauauau uuau---aua uug----aua 481 ac|ccuuuga -a--cu|ua( agca)ua-uc auuaaa-a-g g-aggaaa-- --agaaacu( 541 aac-u)ag-g au|uucuuua gu---agc(g gcga)gug-a a-----caag aauc------ 601 ---------- ---------- ---------- ---------- -aacccu|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------u 781 ga-uug(uaa uccu)uaaau gg-------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- --------ag 901 -auguaaa-- --u-cau-u- u-(auucua- )u-uauuua- ---------- --------ua 961 u-|c(aua)g |agaa-(uuu uana)-uucg uu|--acuug auagaauaga au----aauu 1021 ucuuu----- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-aGGGCU GCU(----UG 1141 GUAG)UGCAG UUUGAA---U ACAGGU-A(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 g-aaugaga- ---------- ---------- ---------- )UAU-CUAAG GUU----AAA 1381 UA-------- ---------- -UAAu-GGUA UACCGAUAGC AAAU-AAGUA CU(GCGA)A- 1441 G-GAAU---- ---------- ---(------ )--------- --------uu g-UGAAAA-U 1501 GUGUG-ggu- gu--uagccu uauu~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~(~-~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~]~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 3361 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Vair.sp.SH 9262 bp RNA RNA 11-JAN-191 DEFINITION Vairimorpha sp. ACCESSION No information KEYWORDS No information. SOURCE Vairimorpha sp. ORGANISM Vairimorpha sp. REFERENCE 1 (bases 1 to 8871) AUTHORS Baker,M.D., Vossbrinck,C.R., Maddox,J.V. and Undeen,A.H. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L28977 LOCUS VAIRRLSH 232 bp rRNA RNA 09-AUG-1995 DEFINITION Vairimorpha sp. ribosomal RNA large subunit. ACCESSION L28977 KEYWORDS ribosomal RNA large subunit. SOURCE Vairimorpha sp spore rRNA. ORGANISM Vairimorpha sp. Eukaryotae; Microsporidia; Microsporea; Microsporida; Pansporablastina; Burenellidae; Vairimorpha. REFERENCE 1 (bases 1 to 232) AUTHORS Baker,M.D., Vossbrinck,C.R., Maddox,J.V. and Undeen,A.H. TITLE Phylogenetic relationships among Vairimorpha and Nosema species (Microspora) based on ribosomal RNA sequence data JOURNAL J. Invertebr. Pathol. 64 (2), 100-106 (1994) MEDLINE 95052762 COMMENT NCBI gi: 940326 FEATURES Location/Qualifiers source 1..232 /organism="Vairimorpha sp." /dev_stage="spore" /sequenced_mol="rRNA" rRNA 1..232 /partial /standard_name="large subunit rRNA; partial sequence" /note="putative" BASE COUNT 80 a 21 c 47 g 82 t 2 others ORIGIN BASE COUNT 80 a 21 c 47 g 82 t 9032 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~cccu|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------c 781 ca-uug(uaa uccu)uaauu gg-------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- --------ng 901 -uuguaaa-- --u-ggu-u- u-(auucua- )u-uuauua- ---------- --------ua 961 uu|u(aua)g |agaa-(uau uaua)-uucg uu|--auua- auagaauaga au----aaug 1021 uacuu----- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-aGAGCU GCU(----UG 1141 GUAG)UGCAG UUUGAA---U AAAGGU-A(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 g-aaugaaa- ---------- ---------- ---------- )UAU-CUAAG GUU----AAA 1381 UA-------- ---------- -UAAu-GGUA UACCGAUAGA AAAU-AAGUA CU(GCGA)A- 1441 G-GAAC---- ---------- ---(------ )--------- --------uu g-UGAAAA-U 1501 GUGUG-gag- uu--uagccu na..~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~(~-~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~]~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 3361 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS A.michaeli 9262 bp RNA RNA 11-JAN-191 DEFINITION Ameson michaelis. ACCESSION No information KEYWORDS No information. SOURCE Ameson michaelis. ORGANISM Ameson michaelis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L20293 LOCUS AMXRRNA 468 bp ds-DNA INV 04-JAN-1994 DEFINITION Ameson michaelis large subunit ribosomal RNA gene sequence. ACCESSION L20293 KEYWORDS ribosomal RNA. SOURCE Ameson michaelis muscles DNA. ORGANISM Ameson michaelis Eukaryota; Animalia; Protozoa; Microspora; Microsporea; Microsporida; Pereziidae. REFERENCE 1 (bases 1 to 468) AUTHORS Zhu,X., Wittner,M., Tanowitz,H., Cali,A. and Weiss,L. TITLE Ribosomal DNA phylogeny of three microsporidia species: Enterocytozoon bieneusi, Septata intestinalis and Ameson michaelis JOURNAL Unpublished (1994) FEATURES Location/Qualifiers rRNA <36..>468 /standard_name="large subunit rRNA partial sequence" /label=LSU-rRNA misc_feature 1..35 /standard_name="intergenic spacer" /note="putative" source 1..468 /organism="Ameson michaelis" /sequenced_mol="DNA" /tissue_type="muscles" BASE COUNT 158 a 67 c 126 g 117 t ORIGIN BASE COUNT 147 a 65 c 117 g 104 t 8829 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---|------ 61 |-------|- -|-------- -----uca-a uuggu-uc-u |--------- --ucggu-u- 121 ga-------- ---------- --ga------ ---------- ---------- ----aaggau 181 gggcacaagg gaccacaauu ggucucuugg gagaaa-gga uggg-agagu acc-c-acaa 241 ugg------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------a uu-ugagugc aaacua-uga -gaauc---- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --------c- ---------- -gu-cucu-g aca----AGU 481 AC|UCCUUGA -A--UU|GA( AGCC)UC-UU AGUAAA-G-G A-AGGAAA-- --AGAAACU( 541 AAC-A)AG-G AU|ACCCGUA GU---AGU(- GCGA)ACG-A A-----CUGG AUAG------ 601 ---------- ---------- ---------- ---------- -AGUCUG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cua uguaauccgc 841 aaggagau-- ---------- ---------- ---------- ---------g uuaag-gcug 901 caaaggaa-- --g-uca-g( u-(uggaau- )g)cug-c-- ---------- --------GA 961 --|A(AGA)U |AAGG-(UGA UAUC)-CCUU AC|-aaacgu uagaaaa--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|a AGU-AGCCAU ACU(----UG 1141 GUAG)UGGAU GGUGAA---- -gcggu-g(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 guuuuuuc-- ---------- ---------- ---------- )cau-cgAAG ACU----AAA 1381 UA-------- ---------- -cagg-aaga gACCGAUAGC GAAU-AAGUA GA(GUGA)U- 1441 C-GAAA---- ---------- ---(------ )--------- --------GU G-ugaaau-u 1501 guaga-cuu- ac-auuauua u~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~--~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 2281 ~~~~~~~~~- -~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~(~-~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~]~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 3361 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~-~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ -~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~-~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Micr.57864 9262 bp RNA RNA 29-DEC-1998 DEFINITION Microsporidium 57864.. ACCESSION No information KEYWORDS No information. SOURCE Microsporidium 57864. ORGANISM Microsporidium 57864. REFERENCE 1 (bases 1 to 8871) AUTHORS Rice,R.N. TITLE Direct Submission JOURNAL Submitted (25-FEB-1997) Botany and Zoology, School of Life Sciences, Australian National University, Canberra, ACT 0200, Australia STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U90885 LOCUS M5U90885 7292 bp DNA INV 29-DEC-1998 DEFINITION Microsporidium 57864 16S ribosomal RNA gene, partial sequence, internal transcribed spacer, 5.8S, 23S and 5S ribosomal RNA genes, complete sequence. ACCESSION U90885 NID g4063830 KEYWORDS . SOURCE Microsporidium 57864. ORGANISM Microsporidium 57864 Eukaryotae; Microsporidia. REFERENCE 1 (bases 1 to 7292) AUTHORS Rice,R.N. TITLE Direct Submission JOURNAL Submitted (25-FEB-1997) Botany and Zoology, School of Life Sciences, Australian National University, Canberra, ACT 0200, Australia FEATURES Location/Qualifiers source 1..7292 /organism="Microsporidium 57864" /strain="Anderson" /db_xref="taxon:57864" /dev_stage="spore resting-stage" rRNA <1..1245 /product="16S ribosomal RNA" misc_RNA 1246..1274 /note="internal transcribed spacer" rRNA 1275..1364 /note="covalently linked" /product="5.8S ribosomal RNA" rRNA 1365..3818 /product="23S ribosomal RNA" rRNA 4098..4216 /product="5S ribosomal RNA" BASE COUNT 2477 a 839 c 1276 g 2700 t BASE COUNT 843 a 319 c 540 g 842 t 6718 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~u aaauuuuGCC CACACAUGGG AUC|AAUAGG 61 |AUACCAU|A A|-CGAUGAA GGU|CGUA(- -AAAG-AA)U |AC-GAAAg- -------|[- 121 ---------- ---------- ---------- ---------- ---------- -------]-- 181 ---------- ---------- ----ag-u|a uuuacc-gAA U---(----- )----|---- 241 ---------- -(-------- ---------- ---------- ---------- ---)------ 301 ---------- ---------- -------uaa uaua--(--- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -----uuua- )--uauauu- ---------- --G----AUA 481 AC|CCUUUGA -A--CU|UA( AGCA)UA-UC AUUAAA-A-G G-AGGAAA-- --AGAAACU( 541 AAC-U)AG-G AU|UUCUUUA GU---AGC(G GCGA)GUG-A A-----CAAG AAUC------ 601 ---------- ---------- ---------- ---------- -AACCCU|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ------(--- ---)------ ---------- ---------- ---------- ---------- 841 ---------- ---------- --------ug auuguaau-- --------cc uuaac-ugga 901 gauguaaa-- --u-cau-u( u-(auucua- )u)uauuua- ---------- --------ua 961 u-|C(AUA)G |AGAA-(uuu uaaa)-UUCg uu|-aguuga uagaauagaa u-----aauu 1021 ucuuu----- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGGGCU GCU(----UG 1141 GUAG)UGCAG UUUGAA---U ACAGGU-A(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 G-AAUGAGA- ---------- ---------- ---------- )UAU-CUAAG GUU----AAA 1381 UA-------- ---------- -UAAU-GGUA UACCGAUAGC AAAU-AAGUA CU(GCGA)A- 1441 G-GAAUUU-- ---------- ---(------ )--------- ---------- G-UGAAAA-U 1501 GUGUG-GGU< gu--uag-cc uua------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- (uu-uu)--- -----uaagg >------ACC CGU(CUUGAA 2581 GC)ACGG|AC CAAGG-AGAU UAUAAUUAUA GCAAgaua-a aaa------( -------cua 2641 --)------- ---------- -------uu- ---------- --uaaucguu au(uaau)uu 2701 g-[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------a 2881 u--------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ---------- ----)----- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---(------ -)-------- ---------- -]-------- ---------- -AAGUUAUA- 3181 -AUU-AUAAG ACCCGAAACA C-AGUG-AAC UAUA-CAUG- UU|C-UGGUU GAAGAUAAGC 3241 (AACA----- -----)GUUU AUU-GGAAGA CCA-ua---A UC-AUUCUGA (CGUGCAAA) 3301 UCG-A-UGAU UUAAGAUGUG UAUAGUG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CC AAU-CGAACU GUGUGGUAGC UGGUUCACAG CGAAAUGUCU --(CUCA)GG 3421 ACAGC-AGUC -AU-uuu|au a|---uagga ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ------caua -g|aug--ua gg-ac-acug ---------- ------uuau agua--(uuu 3721 a--)--uauu a-uga-|g-- -------aaa ucuuu-aauu |cuaugga-a -gucuauaa- 3781 au--uaa-uu uua---uagg guga------ ---------- ---------- ---------- 3841 ---------- ---------- --aucuau-u g|uA-UGACU -AGU-GGGCA -CAU-GAUU( 3901 G-UAAG)AAU GAU-GUGC-A AAAAGG(GA- UGAA)CCU-- UAUGAAA--- CAUUAAA--U 3961 A|UUcu-a-A --Au-AG-UA Gauau----- --------ua uaccau---- -AAAUAUGAU 4021 G--AAUACAU UGAGACA-GU AGGGCGGUUG UU(AUGG-AA GUA)GAAAUC CG|C(UAA)G 4081 |AAACGU(GU UACA)AC|-- -GUACCUACC -GAAUGUAUU AUU|GU-AUA AAA--UGGAA 4141 G--AAG-Au- ua-CUACUU| U|-------- --UAUgag-- --AUGUUUC| (- -auu-)---- -auuu-AGGU AGCU------ 4441 --GUG|-CA- AU-UU-GU-- --------U- -U-g-uau-- u------GAA GUAU------ 4501 G-UAU(GUGA -)GUACAUA- UAG|A-AGA| A--ACAAAU- GAGC-CGA-U CUUGGA|GG- 4561 CAGUAACAAU -AU------- -(auuug--- ---------- ---------- ---------- 4621 --)------- |uauaGAUAU A-GAC|UAGG GUU|uucaau ------(-ua uu-)--|-au 4681 ugaaGUGAAU |-CGG-Uguu auuu------ -------<-- ------(--- ----)----- 4741 ---------- ---------- ---(------ -------)-- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----au-aaa aacAA-AG-A AGA(UUAAUA AU-)UCUUC| -AU----uaa au-uacu-g- 4981 --[------- ---------- ---------- ---------- -u---aag(- -guga--)cu 5041 ug-------- ---------- ---------- ---------- ---------] ------auga 5101 ugac-----a gu----auau uu-a--caa- -gu-uuaa-g aaaaaugaa) uuaaac-|uu 5161 u-aauau--- ---------- ---|---agc uaug--gauu ----gu(cau g--)auaag- 5221 aa-au-agu- u--------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------( --------)- ---------- -------auu -uauau--au gcu--ugaua 5401 aaa-auua-- -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ---------- ---------- ---------- --ug-uaa-- uuuuagCCGU 5581 A|CC---uau aCC(GCAUCA )GG|UGU-CU UUGUA(ucau -)AACAaa-| uauu--||u- 5641 ua-a--auua aa-GUAA-GU A-AGGGAAUU CGGCAA-AUU -AGAUCUGUA AC(UUUG)GG 5701 AUAAAGAUU| GGCUCUAG-- ---------- --------<- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 -------(-- ----)----- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 -(cau-g)-- ---------- ----->---- --------CU AGAACU|u(- --uua)cuau 6601 gu-aAGGAAU C|-UGACUGU UU(AUUAA)A AACAUAGCUU uuu-|----- -|-gu(---- 6661 auuu)ac--- ---------- ---------- aagAAGUG-- AAUUCUGCCC AGU|GCAUUU 6721 AU-UGUUAA- ---------- ---a(guug) u--------- ----guaaGC G|AAUGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-U( 6841 UAAUU)GGUG AC|GCGCAUG AAUGGAGCAA CGAGAUUCCU ACUGU-CCCU ACUUACAAUU 6901 UU|GUGAAAC C|ACGAGACA AG(GGAA-CG GG)CUUGUUG -A-AUAuCAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UUU-|AGUAU G---uuc-ua |AUAAUUAUU CGGUAUAu-u 7021 guagag-aGG UGGGA----- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -gau-)---- 7141 ---------- ---guauugu ga-aaCCACU |AGUAUGUU- -UGAAU-AUU UAUUUAu--- 7201 ---------- ---------| --<------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- -(------)- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- ---------- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- -------->- --uau-gaau a-UAUG-GGG AG-UUUGGCU G(GGG)CGGU 7561 A-C|AGCUGU (UAAAAAGUA AC-)ACAG-C U|G|U|CCU- AAGGU-AGAU |GAAUG-AUG 7621 -G(AUG---- GUAA)CCAUC AGUUUA|UU( A|U--AAGG) GAAUAAA-UC U-GCUUUACU 7681 -UUAUGCA(u a--uaac--- )UGUAUUUAG UAGG(-GAAA )CCUUGG|CC --UAG|CGA- 7741 UCCCAAUU-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---a-cau(- ---uc-a--u u---)----- ---------- 7861 -----aug|u -AUUGG-gug au|ugA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUA 7921 GCAGGCAAGC G(AUCAU)AG CGACUCUGCU UUUUGAUUCU UCGAUGUC|G UC-U|C|UUC 7981 UG|AUCA|UC G-UAGUG(UA -UA-)UGUUA CGAA-GUGU| UGGAU(UGUU C)ACCCGgua 8041 augGGGAACG UGAGAUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GUAA---<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->----- gu-au-uu-u ugagUGAACU UUGA(UAGUA 8281 C(GAGA)GGA AC-)UCUAAG U|GAUGACCA Cuggu-agug cga|-uuaac u(auua)agu 8341 uau-guugcu u-agcuac-- gu-cguu--u cgauUAAGGC U(GAAAGCCU CUU-A)AGCC 8401 UGaagcgu-a gcuc-----a aaga--uaca u --|------- ---------- 8701 ----gaauga |aggug(uau gccga)ca-u uuug--aggu uac|ugcuuu uuauguguug 8761 gaguagguua au----(uuu aau------- ---------- ---------- ---------- 8821 ----)----a uuguaa---g uu-|ugauuu a-uua--uua u--uua-uua gu--gua-au 8881 uua~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (2)-Myxomy 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS D.iridis 9262 bp RNA RNA 11-JAN-191 DEFINITION Didymium iridis. ACCESSION No information KEYWORDS No information. SOURCE Didymium iridis. ORGANISM Didymium iridis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X60210 LOCUS DIDLSURNA 6482 bp ds-DNA PLN 12-MAR-1992 DEFINITION D.iridis LSU rRNA gene ACCESSION X60210 KEYWORDS 26S ribosomal RNA; 5.8s ribosomal rna; large subunit rRNA; large subunit ribosomal RNA; subtelomeric sequence. SOURCE Didymium iridis DNA. ORGANISM Didymium iridis Eukaryota; Fungi; Myxomycota; Myxomycetes; Myxogastromycetidae; Physarales; Didymiaceae. REFERENCE 1 (bases 1 to 6482) AUTHORS Johansen,S., Johansen,T. and Haugli,F. TITLE Extrachromosomal ribosomal DNA of Didymium iridis: sequence analysis of large subunit ribosomal RNA gene and sub-telomeric region JOURNAL Unpublished (1992) COMMENT *source: strain=Pan 2-16; From EMBL entry DILSURNA; dated 04-FEB-1992. FEATURES Location/Qualifiers rRNA join(587..2971,3545..4226,4915..5550) /gene="26S" rRNA 1..154 /gene="5.8S" prim_transcript 1..5550 /gene="Large subunit rRNA" misc_feature 155..586 /note="transcribed spacer" misc_feature 5551..6104 /note="sub-telomeric region" misc_feature 6105..6482 /note="telomeric region" BASE COUNT 1422 a 1460 c 2069 g 1531 t ORIGIN BASE COUNT 895 a 924 c 1153 g 885 t 5405 others ORIGIN 1 |--------- ---------- ---------- -----ACCGU UAGGCGAUGG AUU|GCUGGG 61 |UACCCGC|U U|-CGACGAA GAG|CGCA(- -GUGA-AA)C |GC-GAUAAC GC-uugu|[- 121 gauucgca-c ucucugugau ---------- ---------- ---------- -------]-- 181 ---------- ---------- ---caacg|U CACCUC-GAA Cau--cgau- --g-c|ggcc 241 uug------c c(-------- ---------- ---------- -----uucg- ---)gg---- 301 --cacuggcc ---ccccugg -u-uu-gccu ugccu-(--- ---u-----/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --------aa )--aggcggc agg-ucag-g gUG----UUC 481 AC|CCGCUCA -A--UU|UA( AGCA)UA-UA AGUCAG-C-G G-AGGAAA-- --AGAAAUC( 541 AAU-A)GA-G AU|UCUCUCA GU---AGC(U GCGA)GCG-A A-----CAGG GAAU------ 601 ---------- ---------- ---------- ---------- -AGCCCG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -----agacc gaaucccagc 781 uccu--(cuc cg-)---ggg gg-gcg-gga ccuguagucu aaaggggugc ucu------- 841 ---gcaag-- ---------- ---------- ---------- ---------g gaa----ggg 901 uucauugcau --u--gg-g( a-(ugauc-- )u)cccgg-- ---------- --------cg 961 --|c(aua)g |ggcg-(uua uacg)-cgac cg|-----ug gauccga--- ---------- 1021 -----ccugc gaagggug-u uccugc---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGGCUA GCU(----UG 1141 AAAG)UGCUG GCUGAA---U AUGGGG-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUGCUGGC-- ---------- ---------- ---------- )CCU-CCAAG GCU----AAA 1381 UA-------- --------ug AAAGCguGGU AACCGAUAGC GAAC-AAGUA CC(GUAA)G- 1441 G--AAAGCUG -AAA-AGCAC CUC(gu-cu- )GAGG-AGCU --AAAAGAGC A-UGAAAUCC 1501 GUCUA-AUG< ug---aacgg gacauccg-- -ggcuc---- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- -guag-aacg gcguc----g 2221 gugggg-(ua gcu)-cccu- gcc--auacg gcgcuuagua -cuac--acg gcuu--cggg 2281 -gaggcuccg cuggggaggg cugccuuugu uguuucuggg ccuac----- -gggcggggg 2341 ggcacuggug gu-uucg-a- uccguagggc uucuccgccu agcuug---- ----cgacgg 2401 u-------ag gggg-a(uuc g)ucuucccu ------gccu ugu------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 aag-gugu-- ---------- aag-agc--u ugg-uuuccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACGUACAU GCAAGUCU-u -ccagc---( ------cuuc 2641 au)------- ---------- ---g-cugg- ---------- c--cGGCGAA GC(UCAU)GC 2701 AA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------aaa gcaccaa-gg ggcc------ 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----ccc--- ----)----- ---------- ---g-ggccc --gcacugcu 3061 c--------- ---------- ---------- ---------- --uccuaacu gg-gucc--- 3121 -ucgg-gcuu ---------g gau--uggag u]-------- ---------U UGAGCAUGU- 3181 cAUG-UUAGG UCCCGAAAAA C-GACG-AGC UAUG-CUUG- AG|U-AGGCU GAAGCCAGGA 3241 (GAAA----- -----)UCUU GGU-GGAAGG CCG-UC---G CA-GUACUGA (CGUGCAAA) 3301 UCG-U-UUGU CAAACUUGAG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CC AAU-CGAGUC GUUUAGUAGC UGGUUUCCAC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-AAAG -GAA---|-- -|gguu---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ------auaa 3661 agaguGCGGG -G|CGG--UA AA-GACAAUG AUUAGGAGC- -----ACCAG GGAC--(uau 3721 c-g)--GUCU U-UGG-|CUC AUUC-UCAAA CUUUU-AAUG |CUCUGUacg -gg---ccc- 3781 c-ucguccua aacgcggggg g--uccauuc ---------- ---------- ---------- 3841 ---------- ---------- ----aucuag g|UU-CCUUU -AGU-GGGCC -ACG--UUG( 3901 G-UAAG)CAA GGA-UGGC-A AAAAGG(GU- UCAA)ACU-- UAUGCCC--- GGUUAGG--C 3961 U|CUCG-AAA G-C--AU-CG GCACU--c-- ---------a ccaguu---- -AAAAGGUGU 4021 U--GCCCCAU GACGACA-GC UGGGCAGUGG CC(AUGG-AA GCC)GGCAUC UG|C(UAA)G 4081 |GAGUGC(GU AACA)GC|-- -UCACCAGCC -GAAUGGGGU AGC|CC-UGA AAA--UGGAC 4141 G--AGG-UU- CAACCGGUG| U|-------- --AGCCAU-- --ACCGGG-| (- -----)---- ------gAGU AGGG------ 4441 -cGGA|-UA- CC-CU-GG-- --------U- -C-G-GGU-- u------GAA GCGU------ 4501 G-UUG(ccgc -)c--c-ca- UGG|A-CCG| G--CCUGGG- CAGC-AGA-U CUUGGU|AG- 4561 UAGUAGCAAG -UAUUCAUA- U(gcaa---- ---------- ---------- ---------- 4621 ca)CUCUGAA |GGCCGUAGU G-GAG|GAGG GUU|CCUCAA CA-ACA(-GC AGU)UG|CUU 4681 GGGGGUUAGU |-CGGaaUCU AAGC------ -------<-g ccaggg(-ga aa--)ccucg 4741 guaga----- ---------- ---------- ---------- -------cc- -ugg-gaagg 4801 a-ccuauuc- ---gucggg( g-caa-)cuc ggc----ggg ugggaaucuc ccacggc--- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----GC-GAC AGAGA-AG-C AGG(UUAAUA UU-)CCUGC| -AC----uag gc-ugau-ga 4981 g-[cagu--- ---------- ---------- ---------- ------gg(- -gcga--)cc 5041 ---------- uuaaugcaaa ---------- ---------- -----au-c] cga-aacugg 5101 ugac-----g uag---cugg gacc-cggg- -ag-aggg(- aauuuccc-) uccuug-|UU 5161 Acggggguu- ---------a acu---acuc uggu-cagua ---ugc(auu gc-)gcagag 5221 agccagguaa ccu------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----accc-c uAA-----AG 5341 AGUAUGCCG( -uucuu--)C GGUGUAUU-c cuggaa---u ccuucc--gc ugcC-CUAGA 5401 AAA-gccagu -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->ggcugggu aaaaagcg-- ---------- ----uugcgc --uu-cgg-- cc-uaaCCGU 5581 A|CC--Uaa- uCC(GCAUCA )GG|UCU-CC AAGAU(GAGC A)GUCUCU-| GGCGC-||A- 5641 UA-G--AACA AA-GUAGcGU A-AGGGAAUU CGGCAA-GCC -GGAUUCGUA AC(UUUG)GG 5701 AUAAGGAUU| GGCUCUAUA- ---------- -(-----)---- -------CAU AGAACU|U(- --AUA)AAGG 6601 CAAGGGGAAU C|-CAACUGU AU(AAUUA)A AACAUAGCGA UUUG|U--UG G|UGC(---- 6661 caaa)GUG-- ---------- --U-GUAAAC GAAUCGUG-- AUUUCUGCCC AGU|GCUCUG 6721 GA-UGUUAA- ---aauggc- ----(gaaa) -----uccaa ----CCAAGC U|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU+U( 6841 UAAUU)UGUG AC|GCGCAUG AAUGGAUUAA UGAGAUUCCC ACUGU-CCCU ACCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -C-AAU-UAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGGCA C---AAA--C |GCGAGGUGA UUCUAAAGGU 7021 GUAGCAUAGG UGGGAGGc-- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -cugg)---- 7141 --------cC C-GACCUUGA AA-UACCACC |ACUUUCGA- -CAUUG-CCU UGCUAau--- 7201 ---------- ---------| --a AACUA-UUUG U-GUUA-GGG AG-UUUGGCU G(GGG)CGGA 7561 A-A|ACUGCU (-ACACGGCA AC-)GGCA-G U|C|U|CCU- AAGGU-UCAC |UCAGA-GAC 7621 -G(ACA---- GAAA)CGUCU CGUAGA|GC( A|U--AAGG) GCAAAAG-UG A-GCUUAACU 7681 -CACAUUU(u c--aguag-- )UAAUGUGAA GCAA(-GAAA )UUGAGG|CC --UAA|CGA- 7741 UCCUUAA--- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- cggc-ggg(- -uGCC-A--G Cc--)----- ---------- 7861 -----cac|G UUUGAG-GUG AG|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCCGCCAAGC G(UUCAU)AG CGACGUGGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UA C-UAAAG(CA -GA-)AUUCA GUAA-GUGU| UGGAU(UGUU C)ACCC-UCU 8041 UAAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUCCU ACUUG-agucgg auuuu-cu-G ACAGUAGAUC ACCU(CAGUA 8281 C(GAGA)GGA AC-)CGGUGA U|UCGAGCCA CUGGUGUAAG GGC|-UGCUC -(GAGA)-GG 8341 GCAGUGUUCU AACGCUAC-- GC-UCGU--U GGAUGAAGGC U(GGAAGCAU C-U-A)AGCC 8401 CGAAGCCA-U GCUGaa---u aCGA--ACUU U --|------- ---------- 8701 -uguaucgug |uguga(-ca gacga)uc-a cgua-----u uug|uacggg uccugugcgc 8761 u-aau---aa gc-uu----- ---------- -----ucc(g caa-)ggguc ---------- 8821 ---------- -uugcgagu- ugu|ugaggg a|acc--ucu g--ua-cccc c----ca-ug 8881 guuuu|aggc ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS P.flavicom 9262 bp RNA RNA 11-JAN-191 DEFINITION Physarum flavicomum str. UFF6. ACCESSION No information KEYWORDS No information. SOURCE Physarum flavicomum str. UFF6. ORGANISM Physarum flavicomum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X78959 ID PFLSRR standard; DNA; FUN; 3052 BP. XX AC X78959; XX DT 26-APR-1994 (Rel. 39, Created) DT 26-APR-1994 (Rel. 39, Last updated, Version 1) XX DE P.flavicomum (UFF6) large subunit rRNA gene. XX KW large subunit ribosomal RNA. XX OS Physarum flavicomum OC Eukaryota; Plantae; Thallobionta; Myxomycota; Myxomycetes; OC Myxogastromycetidae; Physarales; Physaraceae. XX RN [1] RL Vader A., Naess J., Haugli K., Haugli F., Johansen S.; RL "Nucleolar introns from Physarum flavicomum contain insertion RL elements that may explain how mobile group I introns gained their RL open reading frames"; RL Unpublished. RL RN [2] RP 1-3052 RL Johansen S.; RL ; RL Submitted (18-APR-1994) to the EMBL/GenBank/DDBJ databases. RL S. Johansen, Institute of Medical Biology, University of Tromsoe, RL MH-building Breivika, 9037 Tromsoe, NORWAY XX FH Key Location/Qualifiers FH FT source 1..3052 FT /organism="Physarum flavicomum" FT /strain="UFF6" FT rRNA join(1..450,1088..1780,2965..3052) FT /product="large subunit ribosomal RNA" FT exon 1..450 FT /number=1 FT exon 1088..1780 FT /number=2 FT exon 2965..3052 FT /number=3 FT intron 451..1087 FT /number=1 FT /note="group I intron" FT intron 1781..2964 FT /number=2 FT /note="group I intron" XX SQ Sequence 3052 BP; 741 A; 811 C; 929 G; 571 T; 0 other; BASE COUNT 298 a 289 c 358 g 286 t 8031 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~(~~~~~~ ~)~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~--~~|~~( ~~~~)~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 901 ~~~~~~~~~~ ~~~-~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 --|~(~~~)~ |~~~~-(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~-~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~-~(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~-------- --------~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~------ -~~~~~~~-- -----~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~]~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~----- ----~)~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~-- 3361 --~)~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ --(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~-|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~--~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~-~~~~~ ~~~~~~~~~~ ~~~~-~~~~( 3901 ~~~~~~)~~~ ~~~-~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~-- ~~~~~~~--~ 3961 ~|~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---- ~~~~~~~~~~ 4021 ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~-~~~ ~~~--~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~-- -~~~~~~~~~ ~~~~~~~~~~ ~----~-~~~ ~~~~---~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~- ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-----~-- -~---~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~----~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ---~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ----~~~~~~ ~~~----~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~GAAUU CGGCAA-GCC -GGAUUCGUA AC(UUCG)GG 5701 AUAAGGAUU| GGCUCUAUA- ---------- -(-----)---- -------CAU AGAACU|U(- --ACA)AAGG 6601 CUAGGGGAAU C|-CAACUGU AU(AAUUA)A AACAUAGCGA UUUG|U--UG G|UGC(---- 6661 caaa)GCG-- ---------- --U-GUAAAC GAAUCGUG-- AUUUCUGCCC AGU|GCUCUG 6721 GA-UGUUAA- ---aauggc- ----(gaaa) -----uccaa ----CCAAGC U|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU+U( 6841 UAAUU)UGUG AC|GCGCAUG AAUGGAUUAA UGAGAUUCCC ACUGU-CCCU ACCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -C-AAU-UAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGGCA U---AGA--A |GCGAGGUGA UUCUAAAGGU 7021 GUAGCAUAGG UGGGAGAGC- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- -----acauu uaucc-->(- -----)---- 7141 -------GCU C-GCCAAUGA AA-UACCACC |ACUUUCGA- -UAUUG-CUU UGCUAau--- 7201 ---------- ---------| --a GACUA-UCUA U-GUUG-GGG AG-UUUGGCU G(GGG)CGGA 7561 A-A|ACUGCU (-ACACGGCA AC-)GGCA-G U|C|U|CCU- AAGGU-CCGC |UCAGA-GAC 7621 -G(ACA---- GAAA)CGUCU CGUAGA|GC( A|U--AAAG) GCAAAAG-CG G-GCUUAACU 7681 -CGCAUUU(u c--aguag-- )UAAUGUGAA GCAA(-GAAA )UUGCGG|CU --UAA|CGA- 7741 UCCUUAG--- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- cggc-ggg(- -uGCC-A--G Cc--)----- ---------- 7861 -----cac|G CUUGAG-GUG AG|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCCGCCAAGC G(UUCAU)AG CGACGUGGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UA C-UAAAG(CA -GA-)AUUC~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS P.polyce.1 9262 bp RNA RNA 28-JAN-1983 DEFINITION Physarum polycephalum 5.8S & 26S. ACCESSION No information KEYWORDS No information. SOURCE Physarum polycephalum 5.8S & 26S. ORGANISM Physarum polycephalum 5.8S & 26S. REFERENCE 1 (bases 1 to 8871) AUTHORS No information JOURNAL 3163-3167(1983) checked 6/28/83 STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 9262) Corresponding GenBank entry: V01159 Phylo:Eukaryotes,Protozoan BASE COUNT 975 a 950 c 1161 g 857 t 5319 others ORIGIN 1 |--------- ---------- ---------- -----ACCGU UGGGCGAUGG AUU|GCUUGG 61 |UGCCUGC|U U|-CGACGAA GAG|CGCA(- -GUGA-AA)C |GC-GAUAAC UU-uugu|[- 121 gacucgca-c ucucugugau ---------- ---------- ---------- -------]-- 181 ---------- ---------- ---caacg|U CUCCUU-GAA Cau--uagu- --g-c|ggcc 241 uug------c c(-------- ---------- ---------- -----uucg- ---)gg---- 301 --cacuggcc ---cccuugg -g-au-gccu ugucc-(--- ---uu----/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --------cg )--ggauggc aga-ccag-g gCG----UUC 481 AC|CCGCUCA -A--UU|UA( AGCA)UA-UU AGUCAG-C-G G-AGGAAA-- --AGAAAUC( 541 AAU-C)GA-G AU|UCCCGUA GU---AGC(U GCGA)GCG-A A-----CAGG GAAA------ 601 ---------- ---------- ---------- ---------- -AGCCCG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -----agacc gaaucccuuc 781 cccc--(cua gc-)---ggg gg-ucgcgga ccuguagucu aaggguuggg acc------- 841 ---gcgag-- ---------- ---------- ---------- ---------u caaag-acuu 901 a-cagcaca- --c--ag-g( c-(uaaga-- )u)ccugg-- ---------- --------ag 961 --|c(aca)g |ggcg-(uua cacg)-cgac c-|-----ug guagggc-gg c--------- 1021 -----gacga gagggacu-g acccgc---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGGCCA GCU(----UG 1141 AAAG)UGCUG GCUGAA---G AUAGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUGCUGGC-- ---------- ---------- ---------- )CAU-CUAAG GCU----AAA 1381 UA-------- --------ug AAAGC-AGGC AACCGAUAGC AAAC-AAGUA CC(GUAA)G- 1441 G-GAAAGCUG -AAA-AGCAC CUC(g--uu- )GAGG-AGUU --AAAAGAGC A-UGAAAUCC 1501 GCCCA-AUG< ag---aacgg uaaaucuaua cggcuc---- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- -gucg-aaag gcgcu---gg 2221 gcgggg-(uu cgu)-ccccu gcc--auacg gcgcugagua -cggc--aca gcug--cggc 2281 ugaggcgacg cugggaaagg ugaccuaacg gccaaucucg cuuac----- -gggcgagga 2341 cggucaagga c--accgga- accgcgggac cucuccgucu aggcu----- ----uacacu 2401 c-acgcguga augg-g(uuc g)ccccauaa ccgugagacg ua-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 cagcgugu-- ---------- cag-agc--u uag-uuuacc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACGUACAU GCAAGUCg-a acagc----( ------uuuc 2641 ac)------- ---------- -----gcug- ---------- agacGGCGAA GC(UAAU)GC 2701 AA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------aaa gcaccca-gg gcgagcc--- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----uau--- ----)----- ---------g gcgg-acccc --gcaaugcu 3061 c--------- ---------- ---------- ---------- --uccuaacc gg-gcuc--- 3121 -ucgg-gcuu ---------g gau--uggag u]-------- ---------U UGAGCAUGU- 3181 cAUG-UUAGG UCCCGAAAAA C-GACG-AGC UAUG-CUUG- AG|U-AGGCC GAAGCCAGGA 3241 (GAAA----- -----)UCUU GGU-GGAAGG UCGuAC---G CA-GUACUGA (CGUGCAAA) 3301 UCG-U-UUGU CAAACUUGAG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CC AAU-CGAGUC GUUUAGUAGC UGGUUUCCAC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-AAAG -GAA--a|-- -|-aag---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ------uguc 3661 g-aguAUGGG -G|CGG--UA AA-GACAAUG AUUAGGAGC- -----ACCGG GCGG--(uuu 3721 g-a)--CCGU U-CGG-|CUC AUUC-UCAAA CUUUU-AAUG |CUCUAAagc -cauugacc- 3781 acgcgucgua gcagcgcugg uc-ugggcag u--------- ---------- ---------- 3841 ---------- ---------- ----aucggg u|cU-CCUUU -AGU-GGGCC -ACG--UUG( 3901 G-UAAG)CAA GGA-UGGC-A AAAAGG(GU- UCAA)ACU-- UGUGCCC--- GGUUAGG--U 3961 U|CUCG-AAG A-C--AU-UG GCAAU--g-- ---------a ccacuc---- -AAAAGGUAU 4021 U--GCCUCAU GAUGACA-GC UGGACAGUGG CC(AUGG-AA GCC)GGCAUC UG|C(UAA)G 4081 |GAGUGC(GU AACA)GC|-- -UCACCAGCC -GAAUGGGGU AGU|CC-UGA AAA--UGGAC 4141 G--AGG-UU- CAACCAGUG| C|-------- --AACCAU-- --ACC-GGC| (- -----)---- ------gAGU AGGG------ 4441 -cGGA|-UA- CC-CCaGG-- --------U- -C-G-GGU-- u------GAA GCGU------ 4501 G-CUG(UUGA -)CAGCACG- UGG|A-CCG| G--CCGGGG- CAGC-AGA-U CUUGGU|AG- 4561 UAGUAGCAAG -UAUUCAUA- U(gcaa---- ---------- ---------- ---------- 4621 ca)CUCUGAA |GGCCGAAGU G-GAG|GAGG GUU|CCUCAA CA-ACA(-GC AGU)UG|AUU 4681 GGGGGUUAGU |-CGGaaUCU AAGC------ -------<-g ucaagg(-ga aa--)ccuag 4741 guuaa----- ---------- ---------- ---------- -------ccu cggg-cucuc 4801 guccgcgguc -cugacggg( guaaca)ccc gucucguacc guggcuuggg cucggac--- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----GC-GAC AGAGA-AG-C GGG(UUAAUA UU-)CCUGC| -AC----uca acucgau-gu 4981 ga[cagu--- ---------- ---------- ---------- ------gg(- -gcga--)cc 5041 ---------- uuaaagcgau ---------- ---------- -----au-c] cga-aaccag 5101 ugac-----g uaa---cugg gaac-cgug- -ag-aggg(- auuuuccc-) uccuug-|UU 5161 Acgggaguu- ---------a acu---gcuc uggu-aagcu ---ugc(auu gu-)gcagau 5221 gcccaggcaa ccu------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----acuc-c ucg-----AG 5341 AGCAUGUCG( -uucuu--)C GAUGUGUU-c gcgguc---u ccuucc--gu ugcC-CUAGA 5401 AAA-gcuggc -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->agaugggu gaaacgug-- ---------- ----uugucc --uu-cgg-- uu-gaaCCGU 5581 A|CC--Uaa- uCC(GCAGCA )GG|UCU-CC AAGAU(GAGC A)GUCUCU-| GGCGC-||A- 5641 UA-G--AACA AA-GUAGcGU A-AGGGAAUU CGGCAA-GCC -GGAUUCGUA AC(UUCG)GG 5701 AUAAGGAUU| GGCUCUAUA- ---------- -(-----)---- -------CGU AGAACU|U(- --ACA)AAGG 6601 CUAGGGGAAU C|-CAACUGU AU(AAUUA)A AACAUAGCGA UUUG|U--UG G|UGC(---- 6661 caaa)GCG-- ---------- --U-GUAAAC GAAUCGUG-- AUUUCUGCCC AGU|GCUCUG 6721 GA-UGUUAA- ---aauggc- ----(gaaa) -----uccaa ----CCAAGC U|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-U( 6841 UAAUU)UGUG AC|GCGCAUG AAUGGAUUAA UGAGAUUCCC ACUGU-CCCU ACCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -C-AAU-UAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGGCA U---AGA--C |GCGAGGUGA UUCUAAAGGU 7021 GUAGCAUAGG UGGGAGGGC- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -CCAU)---- 7141 -------GCC C-GUCAAUGA AA-UACCACC |ACUUUCGA- -CAUCG-CUU UGCUAau--- 7201 ---------- ---------| --a GACUA-UCUA U-GUUG-GGG AG-UUUGGCU G(GGG)CGGA 7561 A-A|ACUGCU (-ACACGGCA AC-)GGCA-G U|C|U|CCU- AAGGU-CCAC |UCAGA-GAC 7621 -G(ACA---- GAAA)CGUCU CGUAGA|G-( A|U--AAAG) GCAAAAG-UG G-GCUUAACU 7681 -CGCAUUU(u c--aguag-- )UAAUGUGAA GCAA(-GAAA )UUGCGG|CU --UAA|CGA- 7741 UCCUUAG--- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- cggc-ggg(- -uGCC-A--G Cc--)----- ---------- 7861 -----cac|G CUUGAG-GUG AG|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCCGCCAAGC G(UUCAU)AG CGACGUGGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UA C-UAAAG(C- -GA-)AUUCA GUAA-GUGU| UGGAU(UGUU C)ACCC-ucu 8041 uaAGGGAACG UGAGCUGGGU UUAGAC---- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUCCU ACUUG-agcgGU GUgCC-CU-G AUAGUAGAUC ACUU(CAGUA 8281 C(GAGA)GGA AC-)CAGUGA U|UCAGACCA AUGGUGUAAG CGC|-UGCUC -(GAAC)-GG 8341 GCAGAGCGCU AGAGCUAC-- GU-CUGU--U GGAUGAAGGC U(GGAAGCAU C-U-A)AGCC 8401 CGAAGCCA-U GCUAga---u aGGG--GACG U --|------- ---------- 8701 -cguaaacca |cacag(-ca uacga)cu-g ugcg------ uag|cggaaa ugguguuagu 8761 g-auc---aa gc-ug----- ---------- ---gcugg(c cgu-)cuagc a--------- 8821 ---------- -uugcgaga- cgc|ugagcc a|gug--uuu g--cg-uuuu u----uu-gu 8881 c----|-ggc ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS P.polyce.2 9262 bp RNA RNA 11-JAN-191 DEFINITION Physarum polycephalum. ACCESSION No information KEYWORDS No information. SOURCE Physarum polycephalum. ORGANISM Physarum polycephalum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X60211 LOCUS SLM26SRNA 2675 bp ds-DNA PLN 12-MAR-1992 DEFINITION P.polycephalum 26S rRNA ACCESSION X60211 KEYWORDS 26S ribosomal RNA. SOURCE Physarum polycephalum DNA. ORGANISM Physarum polycephalum Eukaryota; Fungi; Myxomycota; Myxomycetes; Myxogastromycetidae; Physarales; Physaraceae. REFERENCE 1 (bases 1 to 2675) AUTHORS Johansen,S. TITLE Strain-dependent sequence heterogeneity in the nuclear group I introns and large subunit ribosomal RNA in Physarum polycephalum JOURNAL DNA Sequence 2, 193-196 (1991) COMMENT *source: strain=M3C; From EMBL entry PP26SRNA; dated 04-FEB-1992. FEATURES Location/Qualifiers rRNA join(1..402,899..1584,2588..2675) /gene="26S" BASE COUNT 652 a 651 c 805 g 567 t ORIGIN BASE COUNT 295 a 275 c 339 g 267 t 8086 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~(~~~~~~ ~)~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~--~~|~~( ~~~~)~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 901 ~~~~~~~~~~ ~~~-~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 --|~(~~~)~ |~~~~-(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~-~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~-~(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~-------- --------~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~------ -~~~~~~~-- -----~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~]~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~----- ----~)~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~-- 3361 --~)~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ --(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~-|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~--~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~-~~~~~ ~~~~~~~~~~ ~~~~-~~~~( 3901 ~~~~~~)~~~ ~~~-~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~-- ~~~~~~~--~ 3961 ~|~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---- ~~~~~~~~~~ 4021 ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~-~~~ ~~~--~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~-- -~~~~~~~~~ ~~~~~~~~~~ ~----~-~~~ ~~~~---~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~- ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-----~-- -~---~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~----~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ---~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ----~~~~~~ ~~~----~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~GAAUU CGGCAA-GCC -GGAUUCGUA AC(UUCG)GG 5701 AUAAGGAUU| GGCUCUAUA- ---------- -(-----)---- -------CGU AGAACU|U(- --ACA)AAGG 6601 CUAGGGGAAU C|-CAACUGU AU(AAUUA)A AACAUAGCGA UUUG|U--UG G|UGC(---- 6661 caaa)GCG-- ---------- --U-GUAAAC GAAUCGUG-- AUUUCUGCCC AGU|GCUCUG 6721 GA-UGUUAA- ---aauggc- ----(gaaa) -----uccaa ----CCAAGC U|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU+U( 6841 UAAUU)UGUG AC|GCGCAUG AAUGGAUUAA UGAGAUUCCC ACUGU-CCCU ACCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -C-AAU-UAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGGCA U---AGA--C |GCGAGGUGA UUCUAAAGGU 7021 GUAGCAUAGG UGGGAGGGC- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -CCAU)---- 7141 -------GCC C-GUCAAUGA AA-UACCACC |ACUUUCGA- -CAUCG-CUU UGCUAau--- 7201 ---------- ---------| --a GACUA-UCUA U-GUUG-GGG AG-UUUGGCU G(GGG)CGGA 7561 A-A|ACUGCU (-ACACGGCA AC-)GGCA-G U|C|U|CCU- AAGGU-CCAC |UCAGA-GAC 7621 -G(ACA---- GAAA)CGUCU CGUAGA|GC( A|U--AAAG) GCAAAAG-UG G-GCUUAACU 7681 -CGCAUUU(u c--aguag-- )UAAUGUGAA GCAA(-GAAA )UUGCGG|CU --UAA|CGA- 7741 UCCUUAG--- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- cggc-ggg(- -uGCC-A--G Cc--)----- ---------- 7861 -----cac|G CUUGAG-GUG AG|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCCGCCAAGC G(UUCAU)AG CGACGUGGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UA C-UAAAG(CA -GA-)AUUC~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (2)-Paraba 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS P.hominis 9262 bp RNA RNA 09-NOV-1992 DEFINITION Pentatrichomonas hominis.; 28S ribosomal RNA. ACCESSION Z18259 KEYWORDS 28S ribosomal RNA. SOURCE Pentatrichomonas hominis. ORGANISM Pentatrichomonas hominis. REFERENCE 1 (bases 1 to 291) AUTHORS Viscogliosi,E., Philippe,H., Baroin,A., Perasso,R. and Brugerolle,G. TITLE Molecular phylogeny of Trichomonads based on partial sequences of large subunit rRNA and comparison with cladistic analysis of morphological data JOURNAL J. Protozool. 0, 0-0 (1992) STANDARD No information REFERENCE 2 (bases 1 to 291) AUTHORS Perasso,R. TITLE Direct Submission JOURNAL Submitted (02-NOV-1992) Perasso R., Universite Paris XI, Biologie Cellulaire 4, Bat. 444, ORSAY, FRANCE, 91405 cedex STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: Z18259 NCBI gi: 9988 BASE COUNT 92 a 54 c 80 g 65 t 8971 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~AAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-U)AG-G AU|UCCCUUA GU---AAA(G GCGA)UCG-A A-----GAGG GAAG------ 601 ---------- ---------- ---------- ---------- -agccca|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- -auaucuuaa 781 uccc---gca a------ggg a--------- --------ca uguagacauu gaucuua--- 841 ---------- ---------- ---------- ---------- ---------- --uug-ccac 901 aguc-uaagc --a--cg-u( u-(-gaau-- )a)au-gc-- ---------- --------GC 961 --|G(AUA)C |AGAG-(UGA UAGC)-CUCG UU|--agacu accg--gcaa g-----uuuc 1021 gg-------- ---------u acauuggagu ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUA CUU(----UG 1141 AGAG)UGGUG CCCUAA---G UAgg-u-g(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 guaugccc-- ---------- ---------- ---------- )cau-ccaag gcu----aaa 1381 ua-------- --------cu g--UG-AGGA GACCGAUAGA UUAC-AAGUA GU(GUGA)A- 1441 C-GAAAG~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~]~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 3361 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.vaginali 9262 bp RNA RNA 30-SEP-1988 DEFINITION Trichomonas vaginalis.; 28S ribosomal RNA. ACCESSION M19224 J03648 KEYWORDS 28S ribosomal RNA. SOURCE Trichomonas vaginalis. ORGANISM Trichomonas vaginalis. REFERENCE 1 (bases 1 to 341) AUTHORS .P. and Adoutte,A. Baroin,A., Perasso,R., Qu,L.-H., Brugerolle,G., Bachellerie,J.-P TITLE sequencing of a portion of 28S ribosomal RNA Partial phylogeny of the unicellular eukaryotes based on rapid JOURNAL Proc. Natl. Acad. Sci. U.S.A. 85, 3474-3478 (1988) STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: M19224 Draft entry and printed copy of sequence for [1] kindly provided by A.Baroin, 26-APR-1988. NCBI gi: 176248 BASE COUNT 107 a 70 c 90 g 70 t 8925 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~nnu )--agu-cug cca-uacg-c agg----aag 481 AC|CCGCUGA -A--CU|GA( AGCA)UC-UC AUUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-U)AG-G AU|UCCCUUA GU---AAA(G GCGA)UCG-A A-----AAGG GAAC------ 601 ---------- ---------- ---------- ---------- -agccca|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- -acgucuuaa 781 uccc---gca a------ggg a--------- --------aa uguagucggu ucaccua--- 841 ---------- ---------- ---------- ---------- ---------- --uug-cacu 901 gguc-uaa-- --g-uca-g( a-(uggaa-- )u)cu-gc-- ---------- --------GC 961 --|G(AUU)C |AGAG-(UAA AAGC)-CUCG UA|--ugacc aaccgcaagc u-----uac- 1021 ga-------- ---------u ggaccgggga ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGAUA CUU(----UG 1141 AGAG)UAGUG UCUUAA---G -ggggu-g(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 guaugucc-- ---------- ---------- ---------- )cau-ccaag gcu----aaa 1381 ua-------- --------ac g--UG-AGGA GACCCAUAGA UUAC-AAGUA GU(GUGA)A- 1441 C-GAAAnn~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~]~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 3361 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.augusta 9262 bp RNA RNA 09-NOV-1992 DEFINITION Tritrichomonas augusta.; 28S ribosomal RNA. ACCESSION Z18261 KEYWORDS 28S ribosomal RNA. SOURCE Tritrichomonas augusta. ORGANISM Tritrichomonas augusta. REFERENCE 1 (bases 1 to 288) AUTHORS Viscogliosi,E., Philippe,H., Baroin,A., Perasso,R. and Brugerolle,G. TITLE Molecular phylogeny of Trichomonads based on partial sequences of large subunit rRNA and comparison with cladistic analysis of morphological data JOURNAL J. Protozool. 0, 0-0 (1992) STANDARD No information REFERENCE 2 (bases 1 to 288) AUTHORS Perasso,R. TITLE Direct Submission JOURNAL Submitted (02-NOV-1992) Perasso R., Universite Paris XI, Biologie Cellulaire 4, Bat. 444, ORSAY, FRANCE, 91405 cedex STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: Z18261 NCBI gi: 10366 BASE COUNT 91 a 55 c 78 g 64 t 8974 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~AAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-U)AG-G AA|UCUCUUA GU---AAG(U GCGA)CCG-A A-----GAGA GGAA------ 601 ---------- ---------- ---------- ---------- -aguucg|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- -ucgaccuaa 781 ucc----cuc g-------gg a--------- --------aa ugugguugag gggucuu--- 841 ---------- ---------- ---------- ---------- ---------- --uua-ccug 901 gcau-uaa-c --u--gg-a( g-(ucaaau- )c)uc-cg-- ---------- --------GC 961 --|U(AUA)A |AGAG-(UUU AAGC)-CUCG UU|--gcuaa u--g--guaa g-----cua- 1021 gg-------- ---------u cccuguaaac ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGCA GCU(----UG 1141 AGAA)UGCUG CCUUAA---G ACgggu-u(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 gaacgucc-- ---------- ---------- ---------- )ccu-cagaa acu----aaa 1381 ua-------- --------cu g--UA-AGAA GACCCAUAGA GCAC-AAGUA GU(GUGA)A- 1441 G-GAAAG~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~]~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 3361 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.foetus 9262 bp RNA RNA 08-NOV-1992 DEFINITION Tritrichomonas foetus.; 28S ribosomal RNA. ACCESSION Z18239 KEYWORDS 28S ribosomal RNA. SOURCE Tritrichomonas foetus. ORGANISM Tritrichomonas foetus. REFERENCE 1 (bases 1 to 287) AUTHORS Brugerolle,G. Viscogliosi,E., Philippe,H., Baroin,A., Perasso,R. and TITLE cladistic analysis of morphological data Molecular phylogeny of Trichomonads based on partial sequences of large subunit rRNA and comparison with JOURNAL J. Protozool. 0, 0-0 (1992) STANDARD No information REFERENCE 2 (bases 1 to 287) AUTHORS Perasso,R. TITLE Direct Submission JOURNAL Submitted (02-NOV-1992) Perasso R., Universite Paris XI, Biologie Cellulaire 4, Bat. 444, ORSAY, FRANCE, 91405 cedex STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: Z18239 NCBI gi: 10702 BASE COUNT 91 a 53 c 82 g 61 t 8975 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~AAG-C-G G-AGGGAA-- --AGAAACU( 541 AAC-U)AG-G AA|UCUCUUA GU---AAG(U GCGA)CCG-A A-----GAGA GUCA------ 601 ---------- ---------- ---------- ---------- -aguucg|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- -uugaccuaa 781 ucc----cuc g-------gg a--------- --------aa ugugguugag agguucu--- 841 ---------- ---------- ---------- ---------- ---------- --cug-ccau 901 agcg-uaa-c --u--gg-a( g-(ucgaau- )c)uc-cg-- ---------- --------GC 961 --|U(AUA)A |AGAG-(UUU AAGC)-CUCG UA|--gcuau g--g--gcaa g-----cua- 1021 gg-------- ---------u ccuuguaaac ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGCA GCU(----UG 1141 AGAA)UGCUG CC-UAA---G AUgggu-g(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 guacgccc-- ---------- ---------- ---------- )cau-cagaa acu----aaa 1381 ua-------- --------au g--UA-AGAA GACCGAUAGA GCAC-AAGUA GU(GAGA)A- 1441 G-GAAAG~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~]~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 3361 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.muris 9262 bp RNA RNA 09-NOV-1992 DEFINITION Tritrichomonas muris.; 28S ribosomal RNA. ACCESSION Z18255 KEYWORDS 28S ribosomal RNA. SOURCE Tritrichomonas muris. ORGANISM Tritrichomonas muris. REFERENCE 1 (bases 1 to 286) AUTHORS Brugerolle,G. Viscogliosi,E., Philippe,H., Baroin,A., Perasso,R. and TITLE Molecular phylogeny of Trichomonads based on partial sequences of large subunit rRNA and comparison with cladistic analysis of morphological data JOURNAL J. Protozool. 0, 0-0 (1992) STANDARD No information REFERENCE 2 (bases 1 to 286) AUTHORS Perasso,R. TITLE Direct Submission JOURNAL Submitted (02-NOV-1992) Perasso R., Universite Paris XI, Biologie Cellulaire 4, Bat. 444, ORSAY, FRANCE, 91405 cedex STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: Z18255 NCBI gi: 10747 BASE COUNT 82 a 50 c 88 g 66 t 8976 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~AAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-U)AG-G AA|UCUCUUA GU---AAG(U GCGA)CCG-A A-----GAGA GGAA------ 601 ---------- ---------- ---------- ---------- -agucgg|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- -ucgacccaa 781 ucc----uuu u-------gg a--------- --------aa ugugguugag aggcuuu--- 841 ---------- ---------- ---------- ---------- ---------- --uug-cuag 901 agcg-uaa-c --u--ug-u( g-(augguu- )c)ac-ag-- ---------- --------GC 961 --|U(AUA)A |AGAG-(UUU AAGC)-CUCG UA|--gcuuu ---u--gcaa g-----cua- 1021 gg-------- ---------u cccuguaaac ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGCA GCU(----UG 1141 AGAA)UGCUG CCUUAA---G -uaggu-g(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 guacgccc-- ---------- ---------- ---------- )cau-cagaa acu----gga 1381 ug-------- --------cu g--UG-AGAA GACCGAUGGA GCGC-GAGUG GU(GUGA)A- 1441 G-GAAAG~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~]~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 3361 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (2)-Crown 9262 bp RNA RNA ~?~???? DEFINITION Eukaryote crown group. ACCESSION No information KEYWORDS No information. SOURCE Eukaryote crown group. ORGANISM Eukaryote crown group. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS (3)-Alveol 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS (4)-Apicom 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS (5)-Coccid 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS E.tenella 9262 bp RNA RNA 30-OCT-1997 DEFINITION Eimeria tenella.; . ACCESSION AF026388 KEYWORDS . SOURCE Eimeria tenella. ORGANISM Eimeria tenella. REFERENCE 1 (bases 1 to 8502) AUTHORS Littlebury,P.L. and Tomley,F.M. TITLE Direct Submission JOURNAL Submitted (23-SEP-1997) Mol. Biol, Institute for Animal Health, Compton, Newbury, Berkshire RG20 7NN, UK STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF026388 BASE COUNT 904 a 756 c 1019 g 964 t 5619 others ORIGIN 1 |--------- ---------- ---------- ----AAACUU UCAGCAAUGG AUG|UCUUGG 61 |CUCACGC|A U|-CGAUGAA GGA|CGCA(- -GCGA-AA)U |GC-GAUACG CA-uugu|[- 121 gaauugcaga uuucagugaa c--------- ---------- ---------- -------]-- 181 ---------- ---------- ---cauca|G AUUUCU-GAA Cgc-(acaug )-g-c|--gc 241 ugc----ugg u(-------- ---------- ---------- -----auuuu ---)gccc-- 301 -----gcagc ---acgucug -u-uu-cagu gucu--(--- ---cu----/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------au- )--agaccug aaaucagu-c gAG----GUU 481 AC|CCGCUGA -A--UU|UA( AGCA)UA-UU AUUAAG-C-G G-AGGAAA-- --AGAAAAU( 541 AAC-A)AU-G AU|UCCCUCA GU---AAC(G GCGA)GUG-A A-----GCGG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------a agugaaaauc gug------a 781 gucccu(uug uu-)uggc-- cu----cacg aauugua--- ----gccucu agaag-cgug 841 gccagugg-a gg-g------ ---------- ---------- ---------- gcagg-u--- 901 ----ccaa-- --g-uuu-c( u-(uggaac- )a)gaa-c-- ---------- --------AU 961 --|C(AGA)G |AGGG-(UGA CAGU)-CCCG UC|--cuuug -uccugcuug u----uaggu 1021 cuccacgua- cggugcgc-u uuuauu---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGCGUU CAU(----UG 1141 GGAU)UUGAG CGCAAA---- auGUGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 AUAAGUUU-- ---------- ---------- ---------- )CAC-AUAAA GCU----AAA 1381 UA-------- ---------- UUGGC-GUGA GACCGAUAGU GAAC-AAGUA CU(GUGA)A- 1441 G-GAAAGAUG -AAA-AGGAC UUU(gg-aa- )AGAG-AGUU --AAAAGUGU C-UGAAAU-U 1501 GCUGA-AAG< gg---aagcg auugaaacuu --uagcgu-c ucuggggug- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------c cg-auugggu acuuguagug 2221 uugugcuucc acacuuccgu ua-cagg-gg uagggggcgu ucaguacugc uuuuguccag 2281 uucgaucccu ggagguuggu ca-gcaucag -ugaacugac -ugacuauac uccccgagga 2341 agguaggucu cucgugggc- uguuauagcc ucuggguuug uguucaguug uucacugagg 2401 uguguuuuuu uuugcguucg --ucagcuuc acu(-uucg) aguacugacg uucu------ 2461 ---------- ---------- ---------- ---------- ---------- ---------g 2521 cgau-gcu-- --------gu ccu-uaac-g guuucaaccg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUAUGU GCGAGUAu-- gcggg----( ----c-cgaa 2641 cc)------- ---------- ---c-cugu- ---------- ---aUGCACA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------gag uaggga--ga gguuuguu-- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ---uuuuu-- ----)----- ---------- ggcaugccuc --gcaccuac 3061 g--------- ---------- ---------- ---------- -------acc ga-cc-acga 3121 gc-(u-uu-- -)-gcgaga- -ggu-uugag u]-------- ---------U GUAGCACAU- 3181 -CUG-UUAGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AG|U-AGGGU GAAGUCAGGC 3241 (GAAA----- -----)GCCU GAU-GGAGGC UCG-UA---G CG-AUACUGA (CGUGCAAA) 3301 UCG-U-UCGU CAAACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC GUCUAGUAGC UGGUUUCUUC CGAAGUUUCU --(CUCA)GG 3421 AUAGC-UGGA -GUUc--|-- -|-aa----- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------u 3661 u-aguUUUAU -C|AGG--UA AA-GCGAAUG AUUAGAGGc- -----cucgg gggcg-(cgu 3721 ---)-ugccc u-cga-|CCU AUUC-UCAAA CUUUA-AAUG |GGUAAGauc -ca-guggu- 3781 u-acuucacu g--aacugcu gggguu---- ---------- ---------- ---------- 3841 ---------- ---------- ----AAUa-u g|AA-CUCCA -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGAGG(GA- UGCU)CCU-- AACGCUU--- GGUUAAG--G 3961 U|GCCC-AAA U-A--CU-CG CUCAU-ga-- --------ga uaccau---- -AAAAGGUGU 4021 U--GGUUCAU UUUGACA-GC AGGACGGUGG UC(AUGG-AA GUC)GAAAUC CG|C(UAA)G 4081 |AAGUGU(GU AACA)AC|-- -UUACCUGCC -GAAUGAACC AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- GCAGCG-GU| U|-------- --ACCGAU-- --ACCAGGC| (- -----)-gcg guaau-gAGU AGGA------ 4441 --AGA|-CG- UG-GG-GA-- --------u- -c-g-uag-- c------GAA GCAU----UC 4501 G--GC(GUGA G)CCU-GUG- UGG|A-ACG| G--UCUCUA- GUGC-AGA-U CUUGGU|GG- 4561 CAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GACUGAAGU G-GAG|AAGG GUU|CCAUGU GA-ACA(-GC AAU)UG|GAC 4681 AUGGGUUAGC |-CGG-UCCU AAGC------ -------<-- --gacag-c- -uuaa--cug 4741 cgua-aauuu c--------- -gggg-cuu- -------uuu guccucguuu auc------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----GC-GAA AGGGA-AUAC AGG(AUAAUA UU-)CCUGA| -GC----cag gacgugg-au 4981 --[acugu-- ---------- ---------- ---------- -----acg(- -guaa--)cg 5041 u--------- ---------- ---------- ---------- -----aa-a] uga-acu-cu 5101 cgac-----g cag--gcggg ug-c--cug- -GG-AAGC(G UUGUCUUU-) GCUUUU-|UA 5161 A-cagccu-- --cauuugaa ac-|a-uacc cugg--aauc ----ag(auu au-)cugga- 5221 ga-ua-ggg- uugac----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----uggu-u gGU-----AA 5341 AGCUUCCUG( -gcuuc--)C AGGGAGUC-c ggugcg---c -uccug--ac ugcC-CUUGA 5401 AAA-gaggag -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaaaguu-- ---------- ----guuauu u-gc-acc-- cc-uggCCGU 5581 A|CC--AUUA ACC(GCAUCA )GG|UCU-CC AAGGU(UAGC A)GCCUCU-| GGUCG-||A- 5641 UA-G--AAGA AA-GUAG-AU A-AGGGAAGU CGGCAA-AAU -GGAUCCGUA AC(UUCG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- ------------ -------CUC AGAACU|G(- --GAG)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--UG G|CCG(---- 6661 caaa)CGG-- ---------- --U-GUUGAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---ugugau- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUUAA 6781 C|GGC|GGAC GU(AAC-UAU G)ACGUUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GUGCAUG AAUGGAUUAA UGAGAUUCCC ACUGU-CCCU AUCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCG -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCC G---ACU-UU |GUGGAAC-G CUUGGGGGGU 7021 GUAGCAUAGG UGGGAGC--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -UUCG)---- 7141 ---------G C-GAUCGUGA AA-UACCACU |ACCCUCAG- -UGUCG-UUU UACUUAu--- 7201 ---------- ---------| --a GACAU-AGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (GAAACAAUA GC-)GCAG-G U|G|U|CCU- AAGGC-AAGC |UCAAU-GAG 7621 -A(ACA---- GAAA)UCUCA UGUUGA|CC( A|A--AAGG) GGAAAAG-CU U-GCUUGAUU 7681 -UUGAUUU(u c--aguac-- )GAAUACAAA CUGU(-GAAA )GCAUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -GUC-UGA(- -gaaa-c--u u---)----- ---------- 7861 -----UCA|G CUAGAG-GUG UC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-AGACG(CA -GA-)AGUCU CAAA-GUGU| CGGAU(UGUU C)ACCCGCCA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-a<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->uugga ua-cu-gc-G ACAGUAAUCC AACU(UAGUA 8281 C(GAGA)GGA AC-)AGUUGG U|UCAGAUAC UUGGUUAAUG CGG|-CUAGC U(GAAA)AGC 8341 UAGUGCCGCG A-CGCUACC- AU-CUGU--G GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCA-U GCUG--gcua agca--gugu u<--ucucau cgccucau-u uguu-acuug 8461 cauguuuuuu -uagugccuc uugugcacaa ca-------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- -ucucaccaa cguccuc-ug cggcacggaa 8641 -gggcgauaa ucgcaa-uuu c-c-ca-cau uuggggcgc> --|------- ---------- 8701 ----uacauc |cauug(-ca gacga)cu-u uggc-----g c-a|accagg uauuguaagu 8761 gc-gagagua gg----(cuu -g-------- ---------- ---------- ---------- 8821 ----)---uc cuacgauc-c ac-|uaagau u|uag--ccu g--cgu-u-g ca--cga-ug 8881 uguu-|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS I.felis 9262 bp RNA RNA 17-JUL-1998 DEFINITION Isospora felis.; . ACCESSION U85705 KEYWORDS . SOURCE Isospora felis. ORGANISM Isospora felis. REFERENCE 1 (bases 1 to 3227) AUTHORS Amaro,N., Johnson,A.M. and Luton,K. TITLE Phylogeny of the Apicomplexa as determined from 28S rRNA sequence comparisons JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 3227) AUTHORS Amaro,N., Johnson,A.M. and Luton,K. TITLE Direct Submission JOURNAL Submitted (16-JAN-1997) Cell and Molecular Biology, University of Technology, Sydney, Westbourne St., Gore Hill, NSW 2065, Australia STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U85705 BASE COUNT 832 a 658 c 917 g 820 t 6035 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~U 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UU AUUAAG-C-G G-AGGAGA-- --AGAAAAU( 541 AAC-A)AU-G AU|CCCCUCA GU---AAC(G GCGA)GUG-A A------CGG GGGCc----- 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------a aguggaaauc g-g------a 781 gguucu(uga uu-)gagc-- cu-----ucg acuugua--- ----gccucg agagg-cgcu 841 gccagugg-a gg-c------ ---------- ---------- ---------- gcaga-g--- 901 ----auaa-- --g-uuu-c( u-(uggaaa- )a)gaa-c-- ---------- --------GU 961 --|C(AGA)G |AGGG-(UGA GAAU)-CCCG UC|--cuu-g -cucugc-gu u----uugug 1021 guccacgua- cgguacgc-c uuuaua---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGCGUU CAU(----CG 1141 GGAU)UUGAG CGCAAA---- auGUGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 AUAAGUUU-- ---------- ---------- ---------- )CAC-AUAAA GCU----AAA 1381 UA-------- ---------- UUGGC-GCGA GACCGAUAGC AAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAUG -AAA-AGUUC UUU(gg-aa- )AGAG-AGUU --AAAAGUGC C-UGAAAU-U 1501 GCUGG-AAA< gg---aagcg auuggaacuu ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---guuucau 1861 uccaaugagu gaggcuggug uagc------ ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---auug--a ucccucugcu 2221 uuucccacuc uuuuacggau gg-ga-g-gg uagggg-uug gcauuagaug ugagaccugu 2281 ggaucucuuu ggag-a-ggu ca-gcaucag -u-uacgaag -aagggauuc cgggcggaaa 2341 agguaggu-- ucccugcgg- acugcuuuau aguuucgucu ggcggcuuuc uuuguggcug 2401 gaaugugauu ccga-gu--u --cgggccac acu(-uucg) aguacucgaa uucu------ 2461 ---------- ---------- ---------- ---------- ---------- ---------g 2521 ugau-gcu-- --------ga cag-ucac-g guuucaaccg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUAUGU GCAAGUAu-- gcggg----( ----u-gcca 2641 gu)------- ---------- ---c-cugu- ---------- ---aUGCGUA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------gag uaggga--g- ---uug---- 2941 ---------- ---------- ---------- ---------- ----ggug-- --------cg 3001 cugccgcu-- ---------- ---------- ---------- ------ccuc --gcaccuac 3061 g--------- ---------- ---------- ---------- -------acc ga-cc-acga 3121 uc-(u-ca-- -)-gagaga- -ggu-uugag u]-------- ---------U AUAGCAUAU- 3181 -CUG-UUAGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- GG|U-AGAAU GAAGUCAGGG 3241 (GAAA----- -----)CCCU GAU-GGAGGU UCG-UA---G CG-AUACUGA (CGUGCAAA) 3301 UCG-U-UCGU CAAACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUUCUUC CGAAGUUUCU --(CUCA)GG 3421 AUAGC-UGGA -GUUu--|-- -|-ga----- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------u 3661 u-aguUUUAU -C|AGG--UA AA-GCGAAUG AUUAGAGGc- -----aucgg gg-cg-(ugu 3721 ---)-cgccc u-cga-|CCU AUUC-UCAAA CUUUA-AAUG |GGUAAGauc -ca-gcggu- 3781 u-acuucauu g--aacugcu gggauu---- ---------- ---------- ---------- 3841 ---------- ---------- ----AAUa-u g|AA-CUCCA -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGAGG(GA- UGCU)CCU-- AACGCUU--- GGUUAAG--G 3961 U|GCCA-AAA U-G--CU-CG CUCAU-ca-- --------ga uaccau---- -AAAAGGUGU 4021 U--GGUUCAU UUUGACA-GC AGGACGGUGG UC(AUGG-AA GUC)GAAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAACC AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- GAAGCGGGc| U|-------- --ACCGAU-- --ACCAGGC| (- -----)-gua gcaau-gAGU AGGA------ 4441 --AGA|-CG- UG-GG-GA-- --------u- -c-g-uga-- c------GAA GCGU----UC 4501 G--GC(GUAA G)CCU-GCG- UGG|A-ACG| G--UCUCUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GACUGAAGU G-GAG|AAGG GUU|CCAUGU GA-ACA(-GC AAU)UG|GAC 4681 AUGGGUUAGC |-CGG-UCCU AAGC------ -------<-- --gauag-c- -uuaa--cug 4741 cgua-----g acgucagguu ucugguaaa- ---------- --ccucg-cu -uc------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----GC-GAA AGGGA-GU-C GGG(UUAAUA UU-)CCCGA| -GC----cag gacgugg-au 4981 --[acugu-- ---------- ---------- ---------- -----acg(- -guaa--)cg 5041 u--------- ---------- ---------- ---------- -----aa-g] uga-acuucu 5101 cgac-----g cag--gcagg ug-c-uccg- -GG-AAGC(G UUGUCUUU-) GCUUUU-|UA 5161 A-cagccu-- --ca-aacuu au-|a-uacc cugg--aaac ----ag(uuu ag-)cugga- 5221 ga-ua-ggg- uuggc----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----uggc-u gGU-----AG 5341 AGCACCUUG( -guuuc--)C AAGGUGUC-c ggugcg---c -uccug--ac ugcC-CUUGA 5401 AAA-gaggag -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaaaauu-- ---------- ----guuauu u-gc-acc-- cc-uggCCGU 5581 A|CC--AAUA ACC(GCAUCA )GG|UCU-CC AAGGU(UAGC A)GCCUCU-| GGUCG-||A- 5641 UA-G--AAUA AU-GUAG-AU A-AGGGAAGU CGGCAA-AAU -AGAUCCGUA AC(UUCG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- ------------ -------CUC AGAACU|G(- --GAG)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--UG G|CCA(---- 6661 aaau)UGG-- ---------- --U-GUUGAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---ugugau- ----(gaaa) -----uucaa ----UCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU AUCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCC G---ACU-UU |GUGAAAUGA CUUAGGAGGU 7021 GUAGCAUAAG UGGGAGC--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -UUCG)---- 7141 ---------G C-GCUCGUGA AA-UACCACU |ACUCUUAA- -UGUCG-UUU UACUUAu--- 7201 ---------- ---------| --a GACAC-AGUC A-GGUU-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (GAAACAAUA GC-)GCAG-G U|G|U|CCU- AAGGC-AAGC |UCAAU-GAG 7621 -A(ACA---- GAAA)UCUCA UGUUGA|CC( A|A--AAGG) GGAAAAG-CU U-GCUUGAUU 7681 -UUGAUUU(u c--aguac-- )GAAUACAAA CUGU(-GAAA )GCAUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -GUC-UGA(- -gaaa-c--u u---)----- ---------- 7861 -----UCA|G CUAGAG-GUG UC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-AGACG(CA -GA-)AGUCU CAAA-GUGU| CGGAU(UGUU C)ACCCGCCA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA--<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->uugga ua-cu-gc-G ACAGUAAUCC AACU(UAGUA 8281 C(GAGA)GGA AC-)AGUUGG G|UCGGAUAC UUGGUAAAUG CGG|-CUAGC U(GAAA)AGC 8341 UAGUGC-GCG A-CGCUACC- AU-CCGU--U GGAUUAUGAC U(GAACGCCU C-U-A)AGU~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~~ ~~~~~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS N.caninum 9262 bp RNA RNA 02-MAY-1998 DEFINITION Neospora caninum.; . ACCESSION AF0019 6 KEYWORDS . SOURCE Neospora caninum. ORGANISM Neospora caninum. REFERENCE 1 (bases 1 to 3499) AUTHORS Ellis,J.T. and Amoyal,G. TITLE Neospora caninum large subunit ribosomal DNA JOURNAL Unpublished ST