LOCUS E.coli.ref 9262 bp RNA RNA 11-JAN-1980 DEFINITION Escherichia coli. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS No information JOURNAL E.coli:who:Published STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 9262) Corresponding GenBank entry: J01695 Phylo:Eubacteria,Purple,gamma,3 Phylo:Eubacteria,Purple,gamma,3 BASE COUNT 762 a 639 c 912 g 591 t 6358 others ORIGIN 1 |--------- ---------- ---GGUUAAG CGACUAAGCG UACACGGUGG AUG|CCCUGG 61 |CAGUCAG|A G|GCGAUGAA GGA|CGUG(- -CUAA-UC)U |GC-GAUAAG CGUCGGU|-- 121 ---------- ---------- ---------- ---------- ---------- --------AA 181 GGU(GAUAUG A)ACCGUUAU AACCGGCG|- auuUCC-GAA UGGG(-GAAA )CC-C|AGUG 241 UGU------- -(-------- ---------- ---------- -----UUCG- ---)------ 301 --AC-ACACU ---AUCAUUA -A-CU-GA-- ------(--- ---AUC---- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --------CA )-------UA GGU-UAAU-G AGG----CGA 481 AC|CGGGGGA -A--CU|GA( AACA)UC-UA AGUACC-C-C G-AGGAAA-- --AGAAAUC( 541 AAC-C)GA-G AU|UCCCCCA GU---AGC(G GCGA)GCG-A A-----CGGG GAGC------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------GAG CCU-G---AA 841 UCAG------ ---------- ---------- ---------- ---------- UGUGU-GUGU 901 UAGUGGAA-- --G-CGU-C( U---GGAA-- -A)GGCGC-- ---------- --------GC 961 --|G(AUA)C |AGGG-(UGA CAGC)-CCCG UA|--CACAA AAAUGCACAU G-----CUGU 1021 GAGCUCGAU- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGGGCG GGA(CA-CGU 1141 GGUA)UCCUG UCUGAA---U AUGGGG-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 G-ACCAU--- ---------- ---------- ---------- )CCU-CCAAG GCU----AAA 1381 UA-------- ---------- CUCCU-GACU GACCGAUAGU GAAC-CAGUA CC(GUGA)G- 1441 G-GAAAGGCG -AAA-AGAAC CCC(GGCGA- )GGGG-AGUG A-AAAAGAAC C-UGAAAC-C 1501 GUGUA-CGU< AC-AAGCAGU GGGAGCACGC ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- (UU-AG)-GC GUGUGACUGC >------GUA CCU(UUUGUA 2581 UA)AUGG|GU CAGCG-ACUU AUAUUCUGUA GCAAGGUU-A ACC------( -------GAA 2641 UA)------- ---------- ------GGG- ---------- --GAGCCGAA GG(GAAA)CC 2701 G-[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- -]AGUCU(UA ACU)GGGCGU UAAGUUGCA- 3181 -GGG-UAUAG ACCCGAAACC C-GGUG-AUC UAGC-CAUG- GG|C-AGGUU GAAGGUUGGG 3241 (UAAC----- -----)ACUA ACU-GGAGGA CCG-AA---C CG-ACU-AAU (GUUGAAAA) 3301 AUU-A-GCGG AUGACUUGUG GCUGGGG--G U--------- ---------- ---(GAAA-- 3361 --G)G---CC AAU-CAAACC GGGAGAUAGC UGGUUCUCCC CGAAAGCUAU --(UUAG)GU 3421 AGCGC-CUCG -UGAAUU|CA U|-------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 -----CUCCG -G|GGG--UA GA-GC-ACUG UUUCGGCAA- -------GGG GGUC--(AUC 3721 CC-)--GACU UACCA-|ACC CGAU-GCAAA CUGCG-AAUA |CCGGAG--- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ----AAUGUU A|UC-ACGGG -AGA-CACAC -GGC-GGGU( 3901 GCUAAC)GUC CGU-CGUG-A AGAGGG(AA- ACAA)CCC-- AGACCGCC-- AGCUAAG--G 3961 U|CCCA-AAG U-C--AU-GG UUAAG-UG-- ---------- ----GG---- -AAACGAUGU 4021 G--GGAAGGC CCAGACA-GC CAGGAUGUUG GC(UUAG-AA GCA)GCCAUC AU|U(UAA)A 4081 |GAAAGC(GU AAUA)GC|-- -UCACUGGUC -GAGUCGGCC UGC|GC-GGA AGA--UGUAA 4141 CG-GGG-C-- UAAACCAUG| C|-------- --ACCGAA-- --GCUGCGG| (- UUAU-)-GCG UUGUU-GGGU AGGG------ 4441 --GAG|-CG- UU-CU-GU-- --------aa -G-C-CUg-- c------GAA GGUG------ 4501 U-GCU(GUGA -)GGCAUGC- UGG|A-GGU| A--UCAGAA- GUGC-GAA-U GCUGAC|AU- 4561 AAGUAACGAU -AAAGCGGG- U(GAAAA--- ---------- ---------- ---------- 4621 --)GCCCGCU |CGCCGGAA- G-ACC|AAGG GUU|CCUGUC CA-ACG(-UU AAU)CG|GGG 4681 CAGGGUGAGU |-CGACCCCU AAGGCGAGGC C(GAAA)<-- ------(--- ----)----- 4741 ---------- ---------- ---(------ -------)-- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>GGC 4921 GUAGUC-GAU -GGGA-AA-C AGG(UUAAUA UU-)CCUGU| -AC----UUG GU-GUUA-CU 4981 --[------- ---------- ---------- ---------- --------(- -------)-- 5041 ---------- ---------- ---------- ---------- ---------] GCG-AAGGGG 5101 GGAC-----G GAG--AAGGC UA-U-GUUG- -GC-CGGG(C GACGGUUGU) CCCGGU-|UU 5161 AAGCGUGUA- ---------- GGC|-----U GGUU--UUCC ---AGG(CAA AU-)CCGGA- 5221 AA-AU-CAA- GGCUGA---- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- -----GGC-G UGA-----UG 5341 ACGAGGCAC( --UACG--)G UGCUGAAG-C AACAAA---U -GCCCU--GC UUC--CAGGA 5401 AAA-GCCUCU -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ----AAGC-- ---------- ----AUCAGG --UA-ACA-- UC-AAAUCGU 5581 A|CC--CCAA ACC(GACACA )GG|UGG-UC AGGUA(GAGA A)UACCAA-| GGCGC-||U- 5641 UG-A--GAGA AC-UCGG-GU G-AAGGAACU AGGCAA-AAU -GGUGCCGUA AC(UUCG)GG 5701 AGAAGGCAC| GCUGAUAUGU AGGUGAGGUC C(CUCGC)<- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------- ---------- ----->GGAU GGAGCUG-AA AUCAGU|C(- --GAA)GAUA 6601 CCAGCUGGCU G|-CAACUGU UU(AUUAA)A AACACAGCAC UGUG|C--AA A|CAC(---- 6661 gaaa)GUG-- ---------- --G-ACGUAU ACGGUGUG-- ACGCCUGCCC GGU|GCCG-G 6721 AA-GGUUAAU UGAUGGGGUU AGC-(GCAA) GCGAAGCUCU UGAUCGAAGC C|CCGGUAAA 6781 C|GGC|GGCC GU(AAC-UAU A)ACGGUC|C (UAA)GGUAG CGAAAUUCCU U|GUCGG-G( 6841 UAAGU)UCCG AC|CUGCACG AAUGGCGUAA UGAUGGCCAG GCUGU-CUCC ACCCGAGACU 6901 CA|GUGAAAU U|GAACUCGC UG(UGAA-GA UG)CAGUGUA -C-CCG-CGG CAAGACGGAA 6961 AGACCCCGUG A|ACCUUUAC UAU-|AGCUU G---ACA-CU |GAACAUUGA GCCUUGAUGU 7021 GUAGGAUAGG UGGGAGGCUU UGAAGUGUGG AC-------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- --------(- -GCCA)GUCU 7141 GCAU-GGAGC C-GACCUUGA AA-UACCACC |CUUUAAUG- --UUUG-AUG UUCUAACGUU 7201 GACCCG(UAA UC)CGGGUU| GC-------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- ---------- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- ---------G GACAG-UGUC U-GGUG-GGU AG-UUUGACU G(GGG)CGGU 7561 --C|UCCUCC (UAAAGAGUA AC-)GGAG-G A|G|C|ACG- AAGGU-UGGC |UAAUC-CUG 7621 -G(UCG---- GACA)UCAGG AGGUUA|GU( G|C--AAUG) GCAUAAG-CC A-GCUUGACU 7681 -GCGAGCG(U G---ACGG-- )CGCGAGCAG GUGC(-GAAA )GCAGGU|CA --UAG|UGA- 7741 UCCGGUGG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---UUCUG(- --AAU-G--G A---)----- ---------- 7861 -----AGG|G CCAUCGCUCA AC|GGAUAAA AGGUACUC|C GGG|GAUAAC AG|GCUGAUA 7921 CCGCCCAAGA G(UUCAU)AU CGACGGCGGU GUUUGGCACC UCGAUGUC|G GC-U|C|AUC 7981 AC|AUCC|UG G-GGCUG(AA -GU-)AGGUC CCAA-GGGU| AUGGC(UGUU C)GCCAUUUA 8041 AAGUGGUACG CGAGCUGGGU UUAGAAC--- ---------G UC(GUGA)GA CAGUUCGGUC 8101 CCUAUCUGCC GUGGG-C--- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- -----GCUGG AG-AA-CU-G AGGGGGGCUG CUCC(UAGUA 8281 C(GAGA)GGA CC-)GGAGUG G|ACGCAUCA CUGGUGUUCG GGU|-UGUCA U(GCCA)AUG 8341 GCACUGCCCG GUAGCUAA-- AU-GCGGAAG AGAUAAGUGC U(GAAAGCAU C-U-A)AGCA 8401 CGAAACUU-G CCCCGAG-AU GAGU--UCUC C<-------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------- ---------> CU|GACCCU( UUA)AGGGUC 8701 -CUGAAGGAA |CGUUG(-AA GACGA)CG-A CGUUG---AU A-G|G-CCGG GUGUGUAAGC 8761 GC--A----- ------(GCG A--------- ---------- ---------- ---------- 8821 ----)----- ------UG-C GU-|UGAGCU A|A----CCG G----UAC-U AAU-GAA-CC 8881 GUGAG|GCUU AACCuu|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (1)-Eukary 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS (2)-Amoebi 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS A.proteus 9262 bp RNA RNA 30-SEP-1988 DEFINITION Amoeba proteus.; 28S ribosomal RNA. ACCESSION M19222 J03648 KEYWORDS 28S ribosomal RNA. SOURCE Amoeba proteus. ORGANISM Amoeba proteus. REFERENCE 1 (bases 1 to 419) AUTHORS Baroin,A., Perasso,R., Qu,L.-H., Brugerolle,G., Bachellerie,J.-P .P. and Adoutte,A. TITLE Partial phylogeny of the unicellular eukaryotes based on rapid sequencing of a portion of 28S ribosomal RNA JOURNAL Proc. Natl. Acad. Sci. U.S.A. 85, 3474-3478 (1988) STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: M19222 Draft entry and printed copy of sequence for [1] kindly provided by A.Baroin, 26-APR-1988. NCBI gi: 173717 BASE COUNT 92 a 118 c 139 g 66 t 8847 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~(~~~~~~ ~)~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~nncg )---accucg gau-cagu-c acg----gcc 481 ac|CCGCUGA -A--UU|UA( AGCA)UA-UU AAUAAG-C-G G-AGGAAG-- --AGAAACC( 541 AAC-C)GG-G AU|ACCCCCA GU---AAU(G GCGA)AUG-A A-----GAGG GUAG------ 601 ---------- ---------- ---------- ---------- -agcuca|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 --aaccgaau ccgucguccc --gcggcggc g--gcagucg gggcccccgg ucccggaggu 781 cgucgucgcc cc-cgagugg gc-ggccgag cugugguu-- ugcagacugg cg-------- 841 --uucgcg-- ---------- ---------- ---------- ---------g cgagc-ccgg 901 cggc-caa-- --g-ugu-g( u-(uggaac- )a)cuc-c-- ---------- --------GC 961 --|C(CUA)G |AGGG-(UGA GAGC)-CCCG UU|--guuug ccggcgcgag c-----ccgg 1021 accgu----c cgccaguc-c ca-------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GCU(----UG 1141 AGAG)UGCAG CCUcca---a -agGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 guaggucc-- ---------- ---------- ---------- )CAU-CCAAa gcu----aaa 1381 ua-------- ---------- CGGCG-GGGA GACCGAUAGU ACAA-AAGUA CU(GUGA)A- 1441 G-GAAAnn~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~------ -~~~~~~~-- -----~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~]~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~----- ----~)~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~-- 3361 --~)~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ --(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~-|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~--~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~-~~~~~ ~~~~~~~~~~ ~~~~-~~~~( 3901 ~~~~~~)~~~ ~~~-~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~-- ~~~~~~~--~ 3961 ~|~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---- ~~~~~~~~~~ 4021 ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~-~~~ ~~~--~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~-- -~~~~~~~~~ ~~~~~~~~~~ ~----~-~~~ ~~~~---~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~- ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-----~-- -~---~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~----~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ---~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ----~~~~~~ ~~~----~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~(~~ ~~~-)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~-~~~ ~|~~~(~--~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~-~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-->(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ -~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(- -~~~~~~~~~ ~~~-)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~-)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (2)-Dictyo 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS D.discoide 9262 bp RNA RNA 09-JAN-1985 DEFINITION Dictyostelium discoideum 5.8S and 26S. ACCESSION No information KEYWORDS No information. SOURCE Dictyostelium discoideum 5.8S and 26S. ORGANISM Dictyostelium discoideum 5.8S and 26S. REFERENCE 1 (bases 1 to 419) AUTHORS No information JOURNAL 4171-4184(1984) STANDARD No information COMMENTS Organism information Culture collection: ? and M19231 Sequence information (bases 1 to 9262) Corresponding GenBank entry: X00601 V00189 Phylo:Eukaryotes,Protozoan This one and M19231 are the same through all of M19231 BASE COUNT 984 a 612 c 861 g 946 t 5859 others ORIGIN 1 |--------- ---------- ---------- ---UUAAGCA UAAACGGUGA AUA|CCUCGA 61 |CUCCUAA|A U|-CGAUGAA GAC|CGUA(- -GCAA-AC)U |GC-GAUAAU UC-acuu|[- 121 gaauugcag- ccuacuggga u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---aguug|A AAUGUU-GAA Cgc-(acau- )-gau|gaca 241 ucggu----c c(-------- ---------- ---------- -----uuuc- ---)gg---a 301 uuag-guguu ---auacuug -g-gu-gaga gugg--(--- ---uc----/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------u )--ccgccuc acc-uuug-u aAG----AUU 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UC AGUAAG-C-G G-AGGAAA-- --AGAAACC( 541 AAC-U)AG-G AU|UCCGUCA GU---AAC(G GCGA)GUG-A A-----GACG GAAU------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------aggu ucaaaccugg 781 aucuc-(uuc ---)---gag gc-uagguga ugugaccu-- -----a---- --uggacuga 841 ugg------- -ag-ccc-gc ---------- ---------- ---------- uguug-ug-a 901 cugc-uaau- --u-ccg-u( u-(uggaau- )u)ucg-a-- ---------- --------GU 961 --|C(GUA)G |AAGG-(UGA UAAC)-CCUG UU|--cgcag uaucacaaca g-----uugg 1021 acuuug---- --ccauua-g cuccac---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGGAAU GUC(----UG 1141 AAAU)UGCAU UCUGAA---- -uGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 AUAAGAUU-- ---------- ---------- ---------- )CAU-CCAAG GCU----AAA 1381 UA-------- --------u- AUGUU-AGGA GAUCGAUAGC AUAC-AAGUA CC(GUGA)G- 1441 G-GAAAGGUG -AAA-AGAAC UUU(ga-aa- )AAAG-GUUU --AAAAGUAU U-UGACAC-C 1501 GUUUA-UGU< gg---aagcg uuuacuug-g accccgau-u aaugacgucg guuuagcucu 1561 aauucuuagg uggccaaagu agagu--guu acgugcugau ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ----caaaag guaacggaca uuugauucau 2101 ugguuaucga cgaggaaggu acucuaaauc ggccaguuac uaacggguga gaucugaugu 2161 uuauaaaaug ggggaugagg cuuaucggcu ugcugguggc ucgcucucaa uaa--uggau 2221 auuggguuuc aucaagagu- gcaaaaugg- -uggcaauuc acua---uua gugguuauua 2281 auuuuguuug cguggc---- -uuggccuug ucuacagguu auc--(uucg -)--gauggc 2341 uu---guagc uuuguuga-- ------acgc gu-gggcuua auguu----- ----gugauu 2401 c-u------- -----(agu- ----)----- ----agcguu acc------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- --------au 2521 aucg-uua-- --------ga gug-ggu--u caa-uaaaug >------UCC CGU(CUUGAA 2581 AC)ACGG|AU CAAGG-AGGC CGUUUUGUGU GCGAGUGu-a agagu----( ----a-auua 2641 aa)------- ---------- ---a-cucu- ---------- --gaCGCGUA UU(GAAA)GA 2701 AA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -----gaaua cuccaaa-ag aucguaac-- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----uacg-- ----)----- ---------g uuac-cuucu -guaaggagu 3061 g--------- ---------- ---------- ---------- -------ccc gaauc-auga 3121 gaa(c-ucug u)uucgaaag -gau-uugcg g]-------- ---------U UGAGCACCU- 3181 -AGA-AUGGG ACCCGAAAGG U-UGUG-AAC UAUG-CCUG- AG|G-AAGGC GAAGUCAGGG 3241 (GAAA----- -----)CUCU GAU-GGAAAC UUG-UC---G CA-AUGCUGA (CGUGCAAA) 3301 UCG-C-UUGU CUAACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACA ACCUAGUAGC UGGUUCCUUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-uGGA -GCa---|-- -|-guau--- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------uc 3661 u-aguUCCAU -C|UuG--UA AA-GACAAUG AUUAGCAGU- -----UUCGG GGGC--(gua 3721 a-u)--GCUC U-CAG-|CUG AUUC-UCAAA CUCUG-AACG |GGUGGGuau -cauuuuaa- 3781 uucacuuaau uggauuuuaa aauuaaauug cacaugugca -------aug ---------a 3841 aa-------- ---------- ----AAUa-g g|aG-CUCUu -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGUGG(GU- UGAA)CCA-- AAUAUUG--- GGAUAAG--A 3961 C|GUCU-AAC --A--UU-CA CUAAU-ag-- --------au -accac---- -AAAAGGUGU 4021 U--AGUUCAU UAAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGUAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -AAAUGGACU AGC|CC-UGA AAA--UGGAU 4141 G--ACg-cua gcAGUGGAU| G|-------- --GUCGAU-- --GCCCAAU| (- -----)-cuu uuaac-gUGU AGGA------ 4441 --AGG|-CG- UG-AA-GG-- --------u- -a-a-cgu-- a------GAA GCUU------ 4501 G-AAU(GUGA -)AUUCGAG- UGG|A-GUU| G--UCUUUA- GUGC-AGA-U CUUGAU|GG- 4561 UAGUAGCAAA -UAUUCAAA- A(gaauuua- ---------- ---------- ---------- 4621 --)CUUUGAA |GGCCGAAGU G-GGA|AAGG GUU|CCAUAA CA-AUG(-GA AUU)CA|CUU 4681 AUGGGUGAGU |-CGA-UCCU AAGG------ ---------- 4921 ----CC-GAA AGGGA-AG-C GGG(UUAAAA UU-)CCUGC| -AC----cau cg-aaug-gg 4981 au[auua--- ---------- ---------- ---------- ------gg(- -guaa--)cc 5041 ---------- ---------- ---------- ---------- -----ga-u] cgu-aauccg 5101 ggac-----a uca--auugg cg-g-ucga- -gg-aaga(G UUAUCUUU-) ucucgu-|UA 5161 A-cauuguc- ------u-ug ggg|u---cc uccg--aauc ----gg(guc aa-)cugga- 5221 ga-cg-agg- auucauc--- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- -------gc- ----acaa-u gGA-----AG 5341 AGCACAGUC( -cuuug--)G AUUGGGUC-u cgcauc---c -gcuaa--au gguC-CUUGA 5401 AAA-ccggau -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------u augguauu-- ---------- ----uaaucc --ua-uuu-- gg-uguUCGU 5581 A|CC--AAUA ACC(ACAUCA )AG|UCU-CC AAAGU(AAAU A)ACCUCU-| AGUCA-||Aa 5641 UA-U--AUUA AU-AUAA-AU A-AAGGGAAU CAACAA-AAC -CAGUCUAUA AC(UUCA)GG 5701 GUAAAGGUU| AGCUCUAAA- ---------- ------------ -------UUU AGAACU|G(- --UGA)CGAU 6601 CACCGGGAAU C|-CAACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--UA A|GCU(---- 6661 uaaa)AGC-- ---------- --U-UUUGAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaga) -----uucaa ----CCUAGC A|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUCAA UGAGAUUCCC ACUGU-CCCU AACUACUAUA 6901 CA|GCGAAAC C|acu-gCAA GG(GGAA-CG GG)CCUUGCA -A-AAA-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCU G---AUA-UU |GCAUAGUGA CCUAAAAGGU 7021 GUAGAAUAGG UGGGAGGG-- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -GCAA)---- 7141 --------CC C-GACGGUGA AA-UACCACC |CCUUUUGG- -CGUUA-CUU UGCUAAc--- 7201 ---------- ---------| --g AACAG-UUUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUUUGU (UAAAAGAUA AC-)GCAA-G U|G|U|CCA- AAGGC-AGGC |UCAGU-GAG 7621 -A(ACA---- GAAA)UCUCA CGUAGA|GU( A|A--AAGG) GCAAAAG-CC U-GCUUGAUU 7681 -CUGAUUU(u c--aguaac- )uAAUCGGAA CUGG(-GAAA )CCAAGG|CC --UAU|CGA- 7741 UCCUUUA--- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- uguG-CUU(- -AAAU-C--U U---)----- ---------- 7861 -----AAG|C cUAGAG-GUG UC|aGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(CUCAU)AG CGACGCUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 UU|AUCA|UU G-UGAAG(CA -GA-)AUU~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~- ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~~ ~~~~~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (2)-Diplom 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS G.ardeae 9262 bp RNA RNA 11-JAN-191 DEFINITION Giardia ardeae. ACCESSION No information KEYWORDS No information. SOURCE Giardia ardeae. ORGANISM Giardia ardeae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X58290 Giardia ardeae, Harry van Keulen Sequence of G. ardeae; 1 - 10 3' end 18S 48 start 5.8 S 240 start "28S" 2924 end "28S" BASE COUNT 489 a 953 c 1041 g 343 t 6436 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~c augcagaccc agaccggcGG AUG|CCUGGG 61 |CUCGGGC|C U|-CGAGGAA GGA|CGCG(- -GCGG-AC)A |GC-GAGAug cggugc-|[- 121 -agcccggc- --ac------ gaa------- ---------- ---------- -------]-- 181 ---------- ---------- ---gcacc|G GUUUCC-GAA cgc-(-ucg- )-g-c|cucc 241 ---------- -(-------- ---------- ---------- -----cccg- ---)------ 301 ------ggag ---accggcc -g-cu-cggc ggg---(--- ---------/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------gac )--ucccccg agc-ggcc-g gGG----ACG 481 AC|GGGCGGG -A--CU|UA( AGCA)UA-UC AGUACG-C-C C-AGGAGG-- --AGACACC( 541 AAC-A)GG-G AU|UCCCG-- GU---AGC(G GCGA)GCG-A C-----GCGG GAGG------ 601 ---------- ---------- ---------- ---------- -AGCCCG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --------cc 781 ccgaag(ggc cg-)cugugg g--------- ---------- ---------- ---------- 841 --gcgugg-- ---------- ---------- ---------- ---------- ccgag-ccgg 901 ggggagaa-- --g-uga-g( g-(gggagc- )c)cuc-c-- ---------- --------GC 961 --|C(GGA)G |CGGG-(UGA GAGC)-CCCG UC|--uccc- --cgggcgcg ------ggcc 1021 acgc------ ---------- -ggg------ ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGCGCC GCU(----UG 1141 AGAG)UGCAG CGCGAA---- -cGGGA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUGAUGCC-- ---------- ---------- ---------- )CUU-CCAAG GCU----GAA 1381 UA-------- ---------- CCGGC-CCGA GACCGAUAGC GGACCAAGUA GU(GCGA)A- 1441 C-GAACGGUG -AAA-AGGAC GCC(cccgag )GGCC-GCUC --AAAAG-AC C-UGAAcc-c 1501 ggcug-gcg< ------cccc gagggcccag g--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- (gc-ga)ccu gg-ccgucgg >------GCC CGU(CUCGAA 2581 AC)ACGG|AC CGAGG-AGCC GCCCCCCGGC GCGAGUCa-g aggac----( -------ggg 2641 --)------- ---------- -----gucc- ---------- -uguGGCGGA GC(GACG)GC 2701 G-[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------A 2881 ---------- -------gau cc(-ccc-)g ga-------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- --gccc-(-- 3121 ugcg---)-- --gggcc--- ---------- -]-------- ---------- -GAGCGGCG- 3181 -GGG-GGCGG GCCCGAAAGG C-GGUG-AUC UACG-CCCG- GC|C-AGGGC GAAGCCAGGC 3241 (GAAA----- -----)GCCU GGU-GGAGGC CCG-CC---G CG-GUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU CCGAGCCGGG CGUGGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC GCCUGGUAGC UGGUUGCCUC CGAAAUUUCU --(CCCA)GG 3421 AUAGC-CGCC -ACC--c|-- -|-ggc---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 --agcuGCGG -C|CGG--UA GG-GC-CGCG ACCGGCGGG- -----AGCGG GGGA--(ccu 3721 g--)--UCCC U-CGU-|CCG CCCC-UCGAA CUCCG-AACG |GCCGCgc-c -ac-ggggc- 3781 c-gcuuggcu g--ggcgccg uggggc---- ---------- ---------- ---------- 3841 ---------- ---------- ----agug-c g|GG-UGGCG -UGU-GGGCC -UCU-CCUG( 3901 G-UAAG)CAG GAC-GGGC-G AGACGG(GA- UGAU)CCG-- GAAGCCG--- GGCCAGA--G 3961 U|GCGG-GAC --C--CA-GG CGgagc---- ---------- -----g---- -AAACGGCGU 4021 C--GGUCGGU CCUGACA-GC UGGAAGGUGG CC(CUAG-UA GUC)GGAAUC CU|C(CAA)G 4081 |GAGUGU(GU AACA)AC|-- -CCACCAGCC -GAAUCGACG GGC|CC-GGA AAA--UGGAA 4141 C--GCA-CG- CGAGCCUGG| G|-------- --ACUCAC-- --GCCCGGC| (- cgcg-)---- -uggc-GGGU AGGA------ 4441 --GGC|-CG- CG-GC-GC-- --------u- -c-g-ggu-- c------GAA GGCG------ 4501 G-GGG(GCGA -)CCCGCGC- UGG|A-ccg| g--GCGCCG- GUGC-AGA-U CUCGGU|AG- 4561 CAGUAGCCAC -UACUCCG-- -(ucacc--- ---------- ---------- ---------- 4621 --)--CGGAG |GCCUggg-u G-GAG|AAGG GUU|CCGUGG CG-CCC(-GG CGU)GG|ACC 4681 ACGGGUGACU |-CGG-CCCU AAGC------ -------<-g cguggu(--g ucg-)a-cca 4741 gag------- ------gacg uac(cccc-- -------)gu acg-cccg-- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA AGGGG-AA-C CGG(CGAAGA CU-)CCGGU| -AG----agc gc-agga-uc 4981 --[------- ---------- ---------- ---------- -g---ccg(- -gcga--)cg 5041 c--------- ---------- ---------- ---------- ------g-u] ccg-cccgag 5101 -cac-----g ugc--acggg cc-a-ggcg- -au-ggga(G CCGCCGCG-) ucccag-|cc 5161 cccgcucc-- ---------- ---|-cgcgu gccc-ccgag ----ac(cuu gc-)guggcg 5221 ccggg-gcac g--------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----ggag-c guc-----u- 5341 ---------( --------)- ---------c gccgc----g -gcccg--gu cacC-CCUGA 5401 AAC--cucgg g<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- -----cgg-- ---------- ------ggcg --ug-cug-- cg-cugCCGU 5581 A|CC-----C ACC(GCAGCA )GG|ACU-CC GAGGU(GAGC A)GCCUCU-| GGGC--||g- 5641 gg-a--gAGA CC-GUGA-CU C-AGGGAAGU CGGCAA-GUU -AGCUCCGUA AC(CUCG)GG 5701 AUAAGGAGU| GGCUCUGAU- ---------- --------<- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------c 6541 c(gcc--)gg a--------- ----->---- -------CUC AGAACU|G(- --GAA)CGGA 6601 CucGGGGAUC C|-CGACUGU CU(AAUAG)C AACACAGCGU CGUG|C--GA G|uc-(c--u 6661 gauc)-ga-- ---------- --U-GCGGAC ACGACGUG-- AUUUCUGCCC AGU|GCCACG 6721 AC-CGUCAC- ---cgugaa- ----(gagg) -----uucac ----CCAAGC C|CUGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCGG-G( 6841 UAAUU)UCCG AC|GUGCAUG AAUGGACCAA CGAGGAUCCC ACUGU-CCCG AGUCACGCcu 6901 cc|gcgaacc u|aca-gACC CG(GGAA-CG GG)CGGGUGC -C-GGU-CGG CGGGGCAAGA 6961 AGACCCUUUU G|AGCUUGAC UCC-|AGCCC G---GCC-CU |GGGGGGCGG GGUCACCGGC 7021 GCACGGUACA GGGGAG---- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -GCCG)---- 7141 ---------- C-GCCCAUGA GA-CACCCUG |ACGGUGAC- -CACCG-CCC CACUUAc--- 7201 ---------- ---------| --g GACAC-GGCC G-GGCG-GGG AG-UUUGGCU G(GGG)CGGC 7561 G-C|GCCUGC (UAGACAGCA CC-)GCAG-G C|G|U|CCC- ACGGC-GAGC |UCAGC-GAG 7621 -G(ACG---- GAAA)CCUCC CGUGGA|GC( A|G--AAGG) GCAAAAG-CU C-GCCCGACC 7681 -CGCGCCA(c c--agucc-- )cGGCGCGCg g-GC(-GAAA )GCGCGG|CC --UAC|CGA- 7741 UCCUUCGG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --cG-CUC(- -GGGC-A--U C---)----- ---------- 7861 -----GAG|C GCGGAG-gug aC|aGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCCGCCAAGC G(CCCGC)AG CGACGCGGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|ACCG|UC C-GCGCG(CA -UC-)GGCGC GGAA-GCGU| CGGAU(UGUU C)ACCCGcuc 8041 c-AGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUAUCCUACC GACC---<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->----c cg-gg-gc-G AGAGCACGGC GGGU(CAGUA 8281 C(GAGA)GGA AC-)GCCCGC C|GCGGGCCG CCGGu-cuCG CGG|-UUGCC C(GGCA)GGG 8341 CAGCGCCGCU C-CGCCGC-- GC-CCGg--G GGCCUAGCGC U(GAACGCCU C-U-A)AGCG 8401 CGCACCCC-g CCUCg----- gacc--ccgu c<-------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- --cgacgcc( 8641 ccacccuagc cccgcg-cac --cccg-c)g gcgucg---> --|------- ---------- 8701 ------ccgg |ccggg(-ua gacga)cc-c gccgc----- agc|gcuccu -gu-acgcgg 8761 cg-g-agc-- ------(ccc gcgcgacc-- ---------- ---------- ---------- 8821 ----)----- --gccugag- gaa|-cgccc -|-------- ----cu-gc- -cc-gcc-gc 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS G.intest.1 9262 bp RNA RNA 11-JAN-191 DEFINITION Giardia intestinalis. ACCESSION No information KEYWORDS No information. SOURCE Giardia intestinalis. ORGANISM Giardia intestinalis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X52949 ID GIRRNATR standard; DNA; INV; 5566 BP. AC X52949; DE Giardia intestinalis DNA for rRNA tandem repeat unit OC Eukaryota; Protozoa; Flagellata; Polymastigina. BASE COUNT 457 a 1111 c 1192 g 278 t 6224 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AACGCC CCGCCGGCGG AUG|CCUCGG 61 |CCCGGGC|G G|-CGACGAA GAG|CGCG(- -GCGG-AG)C |GC-GAGAcg cggugc-|[- 121 ggacccgcc- cgccccg--a gaa------- ---------- ---------- -------]-- 181 ---------- ---------- ---gcacc|G ACCCUC-GAA Cgc-(-agc- )-g-c|gc-- 241 ---------- -(-------- ---------- ---------- -----cccg- ---)------ 301 --------gc ---gccgccg -c-cu-cggc gccc--(--- ---------/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------gcg )--cggcccg agg-cggc-g gGG----GCG 481 AC|GGGCGGA -A--CU|UA( AGCA)UA-UC AGUACG-C-C C-CGGAGG-- --AGAAACC( 541 AAC-C)GG-G AU|UCCCC-- GU---AGC(G GCGA)GCG-A C-----GCGG GAgr------ 601 ---------- ---------- ---------- ---------- -AGCCCG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 --cccc(gaa ---)gg-cgc ---------- ---------- gcugug---- ---------- 841 gggcgcag-- ---------- ---------- ---------- ---------- gcgca-ggcc 901 cgccgcga-- --g-ggg-g( c-(ccgagg- )g)ccc-c-- ---------- --------GC 961 --|C(CGA)G |AGGG-(UGC AAGC)-CCCG UA|--cggc- --ggccgccg g-----gccu 1021 ---------- ------gc-g cggc------ ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGCGCU GCU(----UG 1141 AGCG)UGCAG CGCGAA---- --GGGA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GCGCGGCC-- ---------- ---------- ---------- )CUU-CCAAG GCU----AAA 1381 UA-------- ---------- -CGCC-CCGG GACCGAUAGC GGACCAAGUA GC(GCGA)G- 1441 C-VAACGGUG -AAA-AGGAC GCC(cu-gc- )GGCC-GCUC --AAAAG-AC C-UGAACC-C 1501 GGCCG-GCC< gc---cggcc ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- (cg-cc)--- --------gg >------CCC CGU(CUCGAA 2581 AC)ACGG|AC CGAGG-AGCC ACGCGCCGCG GCGAGCCc-g aggg-----( -------agc 2641 c-)------- ---------- ------ccc- ---------- --gcGGCGGA GC(GAGC)GC 2701 G-[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------A 2881 ----gacgcc ccgggcccgc cg(cgccc)c ugcgggcgug cgcgggcc-- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- -------(-- 3121 -------)-- ---------- ---------- -]-------- ---------- -GAGCCGCG- 3181 -GCG-CGUGG GCCCGAAAGG C-GGUG-AUC UAUG-CCCG- GC|G-AGGGC GAGGCCGGGC 3241 (GAAA----- -----)GCCU GGU-GGAGGC CCG-CC---G CG-GUGCUGA (CGCGCAGA) 3301 UCG-C-UCGU CGGAGCCGGG CAUGGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC GCCUGGUAGC UGGUUGCCUC CGAAAUGUCU --(CCCA)GG 3421 ACAGC-CGCC -GCC--c|-- -|-cgc---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 --aguuGCGG -C|CCG--UA GA-GC-GCUG GCCGGCGGG- -----AGCGG GGGG--(ccu 3721 g--)--CCCC U-CGC-|CCG CCCC-CCAAA CUCCG-AAGG |GCCGCgc-c -gc-cccgc- 3781 c-gcuggccu g--ggcgggg cgggcg---- ---------- ---------- ---------- 3841 ---------- ---------- ----AAUg-c g|GG-CGGCG -CGU-GGGCC -CCU-CCUG( 3901 G-UAAG)CAG GAC-GGGC-G AGGCGG(GA- CGAU)CCG-- GACGCCG--- GGCCAGG--G 3961 U|GCGC-CGC --C--GG-GG CCcgc----- ---------- -----g---- -GAACGGCGU 4021 C--GGCCGGU CCCGACA-GC UGGAAGGUGG CC(CCAG-AA GUC)GGCAUC CU|C(CAG)G 4081 |GAGUGU(GU AACA)AC|-- -CCACCAGCC -GAAUCGGCC GGC|CC-GGA AAA--UGGAG 4141 C--GCG-CC- GGAGCCCCG| G|-------- --ACCCGC-- --GCCCGGC| (- cgcg-)---- -cggc-GGGU AGGA------ 4441 --GGC|-CG- CA-GA-GG-- ------ccc- -c-g-gggg- c------GAA GGCG------ 4501 G-CGC(GCAG -)GCCCCGC- CGG|A-CCG| G--CCUCUG- GUGC-AGA-U CUCGGC|AG- 4561 CAGUAGCCGC -UACUCCG-- -(cgccc--- ---------- ---------- ---------- 4621 --)--CGGAG |GACUGAGGG G-GAG|ACGG GUU|CCGCGG CG-CCU(-GC AUC)UG|GCC 4681 GCGGGUGACU |-CGG-GCCU AAGC------ -------<-g gcgggu(--g aag-)a-ccg 4741 gga------- ------aggg gcg(ugcc-- -------)cg ccc-g----- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA cGGGG-AG-C CGG(CGGAGA CU-)CCGGC| -AG----gcg cg-gccc-cc 4981 --[------- ---------- ---------- ---------- -----gcg(- -gaga--)cg 5041 c--------- ---------- ---------- ---------- ------c-c] gcc-ccccgg 5101 cgac-----g cgc--acggg ga-c-cgcg- -gc-gggc(G GCGCCCCG-) gcccgc-|GA 5161 Acgcccc--- ---------- ---|-gcagc cccc-gga-c ----gc(cuu gc-)gcggag 5221 ag-gg-gggc ccg------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- -----ggg-g cgg-----ac 5341 cc-------( --------)- ---------c gc-gcg---u -ccccg--gc cgcC-CCUGA 5401 AAA-gccggg g<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- -----ggc-- ---------- ------gc-- --cg-gcc-- gc-gcgCCGU 5581 A|CC-----G ACC(GCAGCA )GG|ACU-CC GGGGU(CAGC A)GCCUCU-| AGCGc-||g- 5641 gg-a--gCGA AC-GCGG-CU C-AGGGAAGU CGGCAA-GCC -GGCUCCGUA AC(CUCG)GG 5701 AAAAGGAGU| GGCUCUGAC- ---------- --------<- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------g 6541 g(cgc-g)cc gg-------- ----->---- -------GUC AGAACU|G(- --GAA)CGGA 6601 CGCGGGGAUC C|-CGACUGU UU(ACUAG)A AACACAGCGU CGCG|A--GG G|CCG(---- 6661 cacc)CGG-- ---------- --C-GCUGGC GCGACGUG-- AUUUCUGCCC AGU|GCCACG 6721 AC-CGUCAC- ---cgugaa- ----(gcga) -----uccgc ----CGAAGC C|CUGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCGG-G( 6841 CAAUU)UCCG AC|GUGCAUG AAUGGACCAA CGAGGAUCCC ACUGU-CCCG AGCCGCgccu 6901 cc|g-gagcc u|cca-gCCU CG(GGAA-CG GG)CGAGGGC -C-GGC-CAG CGGGGCAAGA 6961 AGACCCUUUU G|AGCUUGAC UCC-|AGCCC G---GGC-CU |GUGGGGCGG GGCGGCCGGC 7021 GCAGCGCACA GGGGAG---- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -GCCG)---- 7141 ---------- C-GCCCCUGA GA-CACCCUG |ACGGCCGC- -CGCCG-CCC CGCUCAc--- 7201 ---------- ---------| --g GACCC-GCCC G-GGCG-GGG AG-UUCGGCU G(GGG)CGGC 7561 G-C|GCCUGC (UACACCGGA CC-)GCAG-G C|G|U|CCC- ACGGC-GGGC |UCAGC-GAG 7621 -G(ACG---- GAGA)CCUCC CGCGGA|GC( A|G--AAGG) GCACAAG-CC C-GCCCGACC 7681 -CGCGCCC(c c--cgugc-- )CGGCGCGGG CCGC(-GAAA )GCGGGG|CC --UAC|CGA- 7741 UCCUUCGC-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --cG-CCC(- -CGGC-C--G C---)----- ---------- 7861 -----GGG|C GCGGAG-gug gC|aGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCCGCCGAGC G(CCCGC)AG CGACGCGGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|ACCG|UC C-GCGCG(CA -CC-)GGCGC GGAA-GCGU| CGGAU(UGUU C)ACCCGuuc 8041 a-AGGGAUCG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GGCC---<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->----c cg-gg-gc-C AGAGCACGGC GGGC(CAGUA 8281 C(GAGA)GGA AC-)GCC-GC C|GCGGGCCG CCAGc-ccCG CGG|-UUGCC C(GGCC)GGG 8341 CAGCGCCGCG C-CGCCGC-- GC-CCGg--G GGCCCUGCGC U(GACCGCCU C-U-A)AGCG 8401 CGCACCCC-g CCUCg----- cgcc--ccgc c<-------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------c ggccgcgcg( 8641 ---ccccagc cccgug-ccc c-gucg-c)c gagcggccc> --|------- ---------- 8701 ------ccgc |ccggg(-ga gacca)cc-c ggcgc----- ggc|gcuccu -gu-acggcg 8761 ca-g-agc-- ------(ccu gc--gauc-- ---------- ---------- ---------- 8821 ----)----- --gccugag- gga|-cgcgc c|---ugcag a--gcg-cg- --g-ggc-gg 8881 ggcg-|---- ------|cgc ggcccacuug cu----cugg gggggugcgg ggcagacaga 8941 caggcagagc gcggaaagag aagauugagg gagugcaggg ugccccaagg gguggccagg 9001 gggcagugca cgcccaccac cgggucugcc uugcacagag agacgcccgu gugcgcaggg 9061 gggcggcgca ggaccgcagg gggcccgggg gaggcggccc ggggga~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS G.intest.2 9262 bp RNA RNA 06-JAN-1988 DEFINITION Giardia intestinalis. ACCESSION No information KEYWORDS No information. SOURCE Giardia intestinalis. ORGANISM Giardia intestinalis. REFERENCE 1 (bases 1 to 419) AUTHORS No information JOURNAL June 6, 1988 STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 9262) Corresponding GenBank entry: X05396 Y00331 This sequence is a compilation of Gen-Bank entries GLARRN58S and GLARRNALS LOCUS GLARRN58S 651 bp ds-DNA INV 15-MAR-1988 DEFINITION Giardia lamblia rDNA for 5.8S rRNA and part of LSRNA and SSRNA. ACCESSION X05396 Y00331 BASE COUNT 96 a 252 c 260 g 46 t 8608 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AACGCC CCGCCGGCGG AUG|CCUCGG 61 |CCCGGGC|G G|-CGACGAA GAG|CGCG(- -GCGG-AG)C |GC-GAGAcg cggugc-|[- 121 ggacccgcc- cgccccg--a gaa------- ---------- ---------- -------]-- 181 ---------- ---------- ---gcacc|G ACCCUC-GAA Cgc-(-agc- )-g-c|gc-- 241 ---------- -(-------- ---------- ---------- -----cccg- ---)------ 301 --------gc ---gccgccg -c-cu-cggc gcccg-(--- ---cc----/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --------cg )--cggcccg agg-cggc-g gGG----GCG 481 AC|GGGCGGA -A--CU|UA( AGCA)UA-UC AGUACG-C-C C-CGGAGG-- --AGAAACC( 541 AAC-C)GG-A AU|U...... ........(. ....)...-. .-----.... .......... 601 .......... .......... .......... .......... .......|-- --------.. 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .....---.. 841 ........-- ---------- ---------- ---------- ---------- .....-.... 901 .........- --.-...-.( .-(......- ).).....-- ---------- -.-.-..... 961 --|.(...). |....-(... ....)-.... ..|--..... .......... .-----.... 1021 .......... ........-. .......... ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|. ...-...... ...(..-... 1141 ....)..... ......---. ......-.(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- )...-..... ...----... 1381 ..-------- --------.. .....-.... .......... ....-..... ..(....).- 1441 .-........ ....-..... ...(.....- )....-.... .-........ .-........ 1501 .........< ..---..... .......... ........-. .......... .......... 1561 .........- .......... .....--... .......... .......... .......... 1621 .......... .......... ......-... .......... .......... .....-.... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... --........ 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... ...--..... 2221 .......... .........- .........- -......... .....-.... ..-....... 2281 .......... ....-..... ..-....... .......... .......... .......... 2341 ...-...... .........- .......... .......... .......... ---....... 2401 .-...-.... ....-..... --........ ....--.... .......... .......... 2461 .-........ .......... .....----- ----...... .----..... .......... 2521 ....-..... .......... ...-...... .......... >......... ...(...... 2581 ..)....|.. .....-.... .......... ........-. .....----( .....-.... 2641 ..)------- ---------- ---......- ---------- .......... ..(....).. 2701 .[.------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---....... .......... .......... .......... .......... .......... 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---....... .........- ---------- -------... .......... 3061 ...------- -----...-. .....----- -......... .......... ......-.-- 3121 -....-..-- --......-. ....-..... -]........ .......... .........- 3181 .......... .......... .-....-... ....-....- ..|.-..... .......... 3241 (....----- -----).... ...-...... ......---. .......... (........) 3301 ...--..... .......... .......--. .--------- ---------- ---(....-- 3361 --.).---.. ...-...... .......... .......... .......... --(....).. 3421 .....-.... -......|.. .|........ ........-. ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.|...--.. ..-....... .........- -......... ..GG--(ccu 3721 gcc)--CCUC G-CCC-|G-C GCCC-CCAAA CUCCG-AAGG |GCCGCcg-c -gccccgcc- 3781 -gcuggccug ggcggggc-g ggcg------ ---------- ---------- ---------- 3841 ---------- ---------- ----AAUg-c g|gg-cggcg -cGU-GGGCC -CCU-CCUG( 3901 G-UAAG)CAG GAC-GGGC-G AGGCGG(GA- CGAU)CCG-- GACGCCG--- GGCCAGG--G 3961 U|GCGC-CGC --C--GG-GG CCcgc----- ---------- -----g---- -GAACGGCGU 4021 C--GGCCGG- CCCGACA-GC UGGAAGGUGG CC(CCAG-AA GUC)GGCAUC CU|C(CAG)G 4081 |GAGUGU(GU AACA)AC|-- -CCACCAGCC -GAAUCGGCC GGC|CC-GGA AAA--UGGAG 4141 C--GCG-CC- GGAGCCCCG| G|-------- --ACCCGC-- --GCCCGGC| (- cgcg-)---- -cggcgGUUC GGGA------ 4441 --GGC|-CG- CA-GA-GG-- ------ccc- -c-g-gggg- c----g-cgA GGCG------ 4501 G-CGC(GCAG -)GCCCCGC- CGG|A-CCG| G--CCUCUG- GUGC-AGA-U CUCGGC|AG- 4561 CAGUAGCCGC -UACUCCG-- -(cgccc--- ---------- ---------- ---------- 4621 --)--CGGAG |GACUGAGGG G~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(-~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~---- ---------- --------~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~- -----~~~~~ ~~~~~~~~~~ ~~-----~-- -~---~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~----~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~-|-~~~ ~~~~~~~~-- ------~~~~ ---~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~~~~~~ 5281 ~~~~~~~~~- ---------- ---------- ---------- ---------- -~~----~~~ 5341 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ 5581 ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~~~~~~-~ ~~~~~~~~~~ ~~~--~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~-~~~ 5701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~-~~~~~~~~ ~-~~~~~~~~ ~-~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ -~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ---~~~~~~~ ~~~~~~~~~~ 6601 ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~-~~~~ ~~~~~~-~~~ ~~~~~~~--~ 6661 ~~~~~~|~~~ ~~|~~~~~~~ ~~~-~~~~-- ---------- -~~~~~~~~~ ~-~~~~-~~~ 6721 ~~-~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 6781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~(~-~ ~)~~~~~~~~ 6841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ 6901 ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~-~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~-~~~-~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~--~~- ~~~~~~~~~~ 7141 ~~~~~~~~~- ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ -~~~~~-~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~----~~~~ ~~-~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7561 ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~|~~~~~ 7621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~--~~~~~~ 7681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~------ ---------- ---~~~~~~~ 7741 ~~~~~~~~~~ ~~~|~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~- -~~~~~~~~~ ~~~-~~~~~~ ~~~~~-~~~~ 7861 ~~~~----|- ---------- -----~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~|~~~ 7921 ~|~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7981 ~~~~~~|~~~ ~~|~~~~~~~ ~~~-~~~|~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---- -------~~~ 8101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 8281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8401 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8701 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~---~~~ 8761 ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ |~~~~~~~~~ 8881 --~~~|~~~~ ~~-~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS G.intest.3 9262 bp RNA RNA 31-DEC-1994 DEFINITION Giardia intestinalis.; . ACCESSION U09492 KEYWORDS . SOURCE Giardia intestinalis. ORGANISM Giardia intestinalis. REFERENCE 1 (bases 1 to 3818) AUTHORS van Keulen,H., Homan,W.l., Erlandsen,S.l., Shields,J.M. and Jarroll,E.L. TITLE spacer DNA sequences: evidence for two major subgroups of human Giardia Two types of Giardia lamblia small subunit ribosomal RNA and JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 3830) AUTHORS van Keulen,H. TITLE Direct Submission JOURNAL Submitted (09-MAY-1994) Harry van Keulen, Cleveland State University, Biology, 1983 East 24th Street, Cleveland, OH 44115, USA STANDARD full automatic COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U09492 NCBI gi: 606646 BASE COUNT 17 a 68 c 59 g 6 t 9112 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AGCCCC GCGCCGGCGG AUG|CCUCGG 61 |CCCGGGC|G G|-CGACGAA GAG|CGCG(- -GCGG-AG)C |GC-GAGAcg cggugc-|[- 121 ggacccgcc- cgccccg--a gaa------- ---------- ---------- -------]-- 181 ---------- ---------- ---gcacc|G GCCCUC-GAA Cgc-(-agc- )-g-c|gc-- 241 ---------- -(-------- ---------- ---------- -----cccg- ---)------ 301 --------gc ---gccgccg -c-cu-cggc gcccg-(--- ---ccgcgug ---------- 361 ---------- ---------- ---------- ---------- ---------- --ccgc~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~---~~~ 481 ~~|~~~~~~~ ~~--~~~~~~ ~~~~~~~-~~ ~~~~~~-~-~ ~~~~~~~~-- --~~~~~~~~ 541 ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~-----~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- --------~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ --~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~-~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~-- ---------- ---------- ---------- ---------~ ~~~~~-~~~~ 901 ~~~~~~~~~~ --~-~~~-~( ~-~~~~~~~~ ~~)~~~~~-- ---------- -~~~-~~~~~ 961 --~~~~~~~~ ~~~~~-~~~~ ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~-----~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~------- ~--------- ---------- 1081 ---------- ---------- ---------- --------~~ ~~~-~~~~~~ ~~~~~~-~~~ 1141 ~~~~~~~~~~ ~~~~~~---~ ~~~~~~-~~- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ~~~~~~~~-- ---------- ---------- ---------- ~~~~~~~~~~ ~~~----~~~ 1381 ~~-------- --------~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1441 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ --~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~--~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~- -~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~-~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~(~-~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~]~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 3361 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS G.muris 9262 bp RNA RNA 11-JAN-191 DEFINITION Giardia muris. ACCESSION No information KEYWORDS No information. SOURCE Giardia muris. ORGANISM Giardia muris. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X65063 Sequence of Giardia muris rDNA repeat. H. van Keulen small subunit: 2098 - 3527 5.8S: 3555 ~ 3676 large subunit:3733 - 6421 BASE COUNT 640 a 753 c 856 g 562 t 6451 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~u gagaugacgc gacccgguGG AUG|CCUUGG 61 |CUCGGGG|G A|-CGAUGAA GGA|CGUG(- -GCUG-AC)G |AC-GAUAcu cgaugu-|[- 121 gg-uccaa-- gcacgug--- ---------- ---------- ---------- -------]-- 181 ---------- ---------- ---acauc|G AUCUUC-GAA U---(----- )----|---- 241 ---------- -(-------- ---------- ---------- ---------- ---)------ 301 --------gg ---aucaucg -g-gg-uggu gg-------- ---------/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ------uccc )---ccccca cuc-cgau-g aAG----AUG 481 AC|GGGUGGA -A--CU|UA( AGCA)UA-UC AGUACG-C-C C-AGGAGA-- --AGACACC( 541 AAC-C)GG-G AU|UCCUUGA UU---AGC(G GCGA)GCG-A U-----CCAG GAGU------ 601 ---------- ---------- ---------- ---------- -AGUCCG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- -----accuc 781 gaagcg(aug ag-)cguugu ga-gg----- ---------- ---------- ---------- 841 acuggggg-- ---------- ---------- ---------- ---------- gaugu-ccua 901 aacccgaa-- --g-aug-g( g-(uugaaa- )c)cca-c-- ---------- --------AC 961 --|C(AAG)G |AGGG-(UGC CAGU)-CC-G UA|--gggau --ggacac-- -------aac 1021 cccaac---- ---------- -gac------ ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-ACCUCU GCU(----UG 1141 AGAG)-GUAG AGGGAA---- -gAGGA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUGGUACC-- ---------- ---------- ---------- )CUU-CUAAG GCU----AAA 1381 UA-------- ---------- CCGCC-CCGA GACCGAUAGA GGACCAAGUA GU(GCGA)A- 1441 C-GAAAGGUG -AGA-AGGAU GCC(gaccca )GGCA-cguC --AAAAG-AC CCUGAAcc-c 1501 gggag-gcg< -a----cucc cgaccugucg a--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- (-u-ga)ucg auuggucgg- >------GCC CGU(CUCGAA 2581 AC)ACGG|AC CGAGG-AGUU AGGACCGAUC GCGAGUC--- ---------( -------aug 2641 u-)------- ---------- ---------- ---------- ----GGCaaa gg(gaag)uc 2701 a-[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------A 2881 ---------- -------gac uu(-caa-)g gg-------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- --gccc-(cu 3121 -uaca-a)-- --gggca--- ---------- -]-------- ---------- -GAGCGAUC- 3181 -GGU-CCUAG ACCCGAAAGG U-GGUG-AUC UACA-CUUG- AC|C-AGGGU GAAGCCAGAC 3241 (GAAA----- -----)GCCU GGU-GGAGGC CCA-UC---C CG-GUGCUGA (CGUGCAAA) 3301 UCG-C-UCGG UCGAGUUGAG UGUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUGGUAGC UGGUUACCUC CGAAAUGUCU --(CCCA)GG 3421 AUAGC-CGAC -AUC--a|-- -|-ugaac-- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 --agcuGCCC -U|AGG--UA AG-GC-CACG AUCGGUGGG- -----AGUAG GGAG--(guc 3721 a--)--CUCC U-UAU-|CCA CCCC-UCGAA CCAUG-AACA |AGGGUg--g -agcggggc- 3781 c-aacuugug ug-ggccccc ucaac----- ---------- ---------- ---------- 3841 ---------- ---------- ----agug-u u|GA-UGUCG -AGU-GGGCC -UCU-CCUG( 3901 G-UAAG)CAG GAC-GGGC-A AGACGG(GA- UGAA)CCG-- ACAGUCG--- GGGGAAG--G 3961 U|GUGGaagU --G--UA-UG CUcgau---- ---------- -----c---- -AAACGGUGU 4021 C--CGUCGAU CGUGACA-GC UGGAAGGUGG CC(UUAA-CA GUA)GGAAGC CU|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -CCACCAGCC -GAAUCGAGG GGC|CC-GGA AAA--UGGAA 4141 C--ACG-CC- GAAGCAUAC| G|-------- --AUCGGA-- --ACCCGAC| (- ugug-)---- -ucuc-GGGU AGGA------ 4441 --GGU|-CG- UC-AU-GA-- --------u- -c-g-agu-- c------GAA GCCA------ 4501 U-GGG(GUGA -)CACGUGG- UGG|A-ucg| ag-UCAUGA- UUGC-UGA-U CUCGGU|AG- 4561 UAGUAGCCAU -UACUCC--- -(aucu---- ---------- ---------- ---------- 4621 --)---GGAG |GCCUGACGU G-GAG|AUGG GUU|CCGUAU CC-CUG(-UC GAU)CA|GAU 4681 ACGGGUGACA |-CGA-UCCU AAGU------ ---------- 4921 ----AC-GAU AGGGcugA-C CGG(UUAACA UC-)CCGGU| --G----gua ug-augg-gg 4981 --[------- ---------- ---------- -------u-- -c---uug(- -guga--)ca 5041 u--------- ---------- ---------- ---------- -----cc-u] uuc-acaacg 5101 guac-----a uga--acgaa gc-a-caug- -gu-ggga(G UCAUCCCG-) uccuac-|cc 5161 caguccccc- ---------- ---|---cau ggcc-aguag ---uac(uuc ag-)gucgug 5221 caugg-ccau g--------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----augg-a uca------- 5341 ---------( --------)- ---------c au--gu---c -cuucg--gu cauC-CAUGA 5401 AAC-ccguug u<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- -------g-- ---------- ----uccccc --cc-auc-- cu-ga-UCGU 5581 A|CC---ACA ACC(GCAACA )GG|ACU-CC AAGGU(GAUC A)GCCUCU-| AGGC--||g- 5641 gg-a--gAGA CC-AUGA-CU C-AGGGAAGU CGGCAA-ACU -AGCUCCGUA AC(CUCG)GG 5701 AGAAGGAGU| GGCUCUGA-- ---------- --------<- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 -(ucg-a)-- ---------- ----->---- --------UC AGAACC|G(- --GCA)CGGA 6601 CcgAGGGAUC C|gCGACUGU CU(ACUAA)C AACAUAGCGU CGUG|C-CAG U|CGU(---c 6661 augg)AUG-- ---------- --A-GCGUAC ACGACGUG-- AUUUCUGCCC AGU|GCCAUG 6721 AC-CGUCAC- ---caugaa- ----(gagg) -----uucau ----CCAAGC C|CUGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCGG-G( 6841 UAAUU)UCCG AC|GUGCAUG AAUGGAUCAA CGAGGAUCCC ACUGU-CCCA AGUCAUGCCU 6901 CC|guGAACC U|aca-gACC CG(GGAA-CG GG)CGGGUGU -U-GGU-CGG CGGGGCAAGA 6961 AGACCCUUUU G|AGCUUGAC UCC-|AAUCC G---AUC-CU |GGGGGAUGG GAUCAUCGGU 7021 GCAGCAUACA GGGGAG---- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -GCCG)---- 7141 ---------- C-UUCCAUGA GA-UACCCUG |ACGUUGUU- -CACCA-UCC CACUCAc--- 7201 ---------- ---------| --g CACAC-GGUC G-GAUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 G-C|GCCUGC (UAGAUCACA CG-)GCAG-G C|G|U|CCU- AUGGU-AAGC |UCAGU-GAG 7621 -G(UCG---- GAAA)CCUCA CGUGGA|GC( A|U--AAGG) GCAUAAG-CU U-ACUUGACU 7681 -AGUACC-(c c--ugucc-- )-GGUACUUG CCGU(-GAAA )GCGUGG|CC --UAA|CGA- 7741 UCCUUCA--- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- accG-CUC(- -CGGU-AauC C---)----- ---------- 7861 -----GAG|C gUGGAG-gug aC|aGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCCGCCAAGC G(CCCAU)AG CGACGUGGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|ACCG|UC C-GCAUG(CA -UC-)GGUGC GGAA-GCGU| CGGAU(UGUU C)ACCCGucu 8041 a-AGGGAUCG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUAUCCUACC GACC---<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->aucuc ca-ug-cg-U CCAGUACGUC GGGU(CAGUA 8281 C(GAGA)GGA AC-)ACCCGU C|GCGAGCCU CCGAu-cuCC CGG|-UUGUU U(GACU)UGA 8341 CAGUGCCGGU C-UGUCGC-- GC-UCGg--G GGACUAGCAC U(GAACGCCU C-U-A)AGUG 8401 UCCAUCCC-a CCUAc----- ucgc--augg g<-------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- -uugagggg( 8641 ---------- cuu------- --------)c cccucga--> --|------- ---------- 8701 -----uucgc |ccggg(-uu gacga)cc-c uuuuc---uc cga|ccuacu -gu-acggcg 8761 ug-g-agc-- ------(uuc uugcgacc-- ---------- ---------- ---------- 8821 ----)----- --gccugag- guu|-ugguu c|-ggguugg c--auu-cc- -cc-ccg-ag 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS D.tigrina 9262 bp RNA RNA 03-DEC-1996 DEFINITION Dugesia (Girardia) tigrina.; . ACCESSION U78718 KEYWORDS . SOURCE Dugesia (Girardia) tigrina. ORGANISM Dugesia (Girardia) tigrina. REFERENCE 1 (bases 1 to 3387) AUTHORS Shimmin,L.C. and Tran,H.N. TITLE Characterization of the ribosomal RNA operon of the planarian Dugesia tigrina JOURNAL Unpublished (1996) STANDARD No information REFERENCE 2 (bases 1 to 3387) AUTHORS Shimmin,L.C. and Austin,D.J. TITLE Direct Submission JOURNAL Submitted (17-NOV-1996) Human Genetics Center, University of Texas Houston Health Science Center, 6901 Bertner Room S 250, Houston, TX 77030, USA STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U78718 BASE COUNT 925 a 611 c 904 g 947 t 5875 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~--~~|~~( ~~~~)~~-UC AUUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-A)AGGG AU|UUCCAUG GU---AGU(G GCGA)ACG-A C-----CUGG AAAA------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -----gcacc g--aauccu- 781 -gugcc(uuu ---)g-guac u--aggaauu gugguguaa- agguu-gugu cuuua---uu 841 g--------- ---------- ---------- ---------- ---------- guuga-gugu 901 acucc-aa-- --a-uuc-a( c-(uugauu- )g)uga-u-- ---------- -aa---agUC 961 --|C(AUA)G |AGGG-(UGU UAGA)-CCCG UG|--ggagu augcgaggcu u-----uua- 1021 ---------- uugacgc--u uccuau---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGAUU GCU(----UG 1141 AGAA)UGCAG UCCAAA---- UCGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAACUC-- ---------- ---------- ---------- )CAU-CUAAG GCU----AAA 1381 UA-------- ---------- CUUGU-GUGA GUCCGAUAGC AAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGUUG -AAA-AGAAC UUU(GA-AG- )AGAG-AGUU A-AAUAGUAC G-UGAAAU-C 1501 GCUUA-GAG< gu---aaacg agugg-agcc gaagcuggug uauggaauuc aguuguuugu 1561 auuuuauucg gauuuggaua caaauuuuuu ugaaagugcc cggauucgau uuuuuacuuu 1621 uacaaucaau gcacuuucca uacaccaaaa cugcgaccaa uagaacgguu ucucugucgu 1681 uuggggaagc ugaccaguuc uucggaaucg guuguauagc ccugagcacg guugaaucca 1741 uguauuggua uuggcgauuu gcaaauuuug auugauuauc gauguuggug guucggauuc 1801 gagcucuuuc cgagaucggg uuugauu--- uguugauguc guagauuauc aaaguguaaa 1861 uccaaagucu gcagugu--- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- -------aua 2521 uguagguu-- --------a- ---------- --ccuacuug >------UCC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUU UUAUAUGAUC GCGAGUCa-a agggc----( --uuuacgaa 2641 a-)------- ---------- -----cccc- ---------- --acGGCGAA AU(UAAU)GU 2701 A-[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---aagguuc au(uucg-)g ugagcu---- ------guga ugugaccuug 2941 u--------- ---------- ---------- ---------- ---------- ---------c 3001 cgg------( ----uuuuc- ----)----- -------ccg gacgagugca acauc----- 3061 ---------- ---------- ---------- ---------- ------aacc cgucugaagg 3121 ug-(u-ucg- -)-caucu-- -ggg-cggag u]-------- ---------U UGAGCGAUC- 3181 -GUG-UAAAG ACCCGAAAGA U-GGUG-AAC UAUG-CUUG- UG|C-AGGUU GAAGUCAGAG 3241 (GAAA----- -----)CUCU GAU-GGAGGA CCG-CC---G CG-GUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU CGGACAUGAG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCUUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGC -GUUU--|-- -|-augau-- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- -------ucc 3661 guaguUGAAC -C|AGG--UA AA-GCGAAUG AUUAGAAGU- -----auugg gggc--(gaa 3721 au-)--gcuc u-caa-|CUU AUUC-UCAAA CUUUA-AAUG |GGUUCGAag -ug-cgccu- 3781 cucuuuaaua uuuuuguugg agguguacau ---------- ---------- ---------- 3841 ---------- ---------- --cgAAUA-c A|AA-UGCCU -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGUGG(GA- UGAA)CCA-- AACAUCC--- GGUUAAG--G 3961 U|GCCU-AAC A-U--CA-CG CUCAU-ga-- --------ga aaccac---- -AAAAGGUGU 4021 U--GGUUGAU AAAGACA-GC AGGACGGUGG AC(AUGG-AA GUC)GUCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACA AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- GUAGCGUGG| G|-------- --ACCUAU-- --ACCGGAU| (- -----)-acg auacc-gUGU AGGA------ 4441 --AGG|-UG- CU-GU-GA-- --------U- -U-G-CCA-- A------GAA GCAU------ 4501 U-AGC(GUGA -)GUUGGUG- UGG|A-GCG| G--UCACGG- GUAC-AGA-U CUUGGU|AG- 4561 UAGUAGCAAU -UAUUCAAG- u(gagau--- ---------- ---------- ---------- 4621 --)CCUUGAA |GACUGAAGU G-GAG|AAGG GUU|CCAUGU GA-ACA(-GU AUU)UG|AAC 4681 AUGGGUUAGU |-CGG-UCCU AAGC------ -(----)<-- --gaucu-gg uaauuc-agu 4741 uaucagaagg aggugauuga caaguaaaa- -------uug ucugauuuuu uuuu-aguag 4801 ccuccugaa- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----GC-GAA AGGGA-AU-C AGG(UUAACA UU-)CCUGA| -AC----uug a--------- 4981 --[auacgga aauuugguua uuucgguaac acaag----- -----gug(- -guaa--)ca 5041 c--------- ---------- ---------- ---------a ag-------] cga-ucucag 5101 agac-----g uca--ucaag ug-u-uucg- -gg-aaga(g uucucuuu-) ucu-uu-|gu 5161 auacauac-- ---------- ---|------ ---caugucc ----cu(aga auc)ag-g-- 5221 -uuaucu--- ---------g gagaaaggga ugu------- ---------- ---------- 5281 ---------- ---------- ---------- --------g- ----aaau-g uca-----aa 5341 agcaccgcg( -guucu--)u gugguguc-c gaag-----c -gccccuggu ggcc-cuuga 5401 aaa-ucugag -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- --ggagca-- ---------- ----guuaua aauuucgu-u uc-aagCCGU 5581 A|CC--GAUA UCC(GCAGCA )GG|UCU-CC AAGGU(GAGC A)GCCUAU-| AGUCU-||-- 5641 UA-G--AACA AU-GUAG-GU A-AGGGAAGU CGGCAA-AUU -AGAUCCGUA CC(UUCG)GU 5701 AAAAGGAUU| GGCUCU---A GG-------- -(-----)---- ----CCU--- AGAACU|G(- --GCA)UGGA 6601 CUAGAGGAAU C|-CGACUGU CU(AAUUA)A AACAAAGCAU UGCG|a--ug g|CUG(---g 6661 ugaa)CGG-- ---------- --C-UUUGAC GCAAUGUG-- AUUUCUGCCC AGU|GCCAUG 6721 AA-UGUCAA- ---ugugaa- ----(gaaa) -----uucaa ----UCAAGC G|CUGGUUAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UCA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GUGCAUG AAUGGAUUAA CGAGAUUCCU ACUGU-CCCU AUCUACUAUC 6901 UA|GCGAAAC U|aca-gCCA AG(GGAA-CG GG)CUUGGAA -U-GUA-UAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCC G---ACU-UU |GUGAGGAAA CAUUAAAGGU 7021 GUAGUAUAAG UGGGAGAC-- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -UUCG)---- 7141 --------GU C-AGCAAUGA AA-UACCACU |ACUUUGAU- -CGUUU-CUU UACUAAC--- 7201 ---------- ---------| -- ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Tre.agilis 9262 bp RNA RNA 11-SEP-1997 DEFINITION Trepomonas agilis.; . ACCESSION AF015455 KEYWORDS . SOURCE Trepomonas agilis. ORGANISM Trepomonas agilis. REFERENCE 1 (bases 1 to 4294) AUTHORS Morin,L. TITLE of the nucleotide signatures in relation to other diplomonads, Microsporidia and trichomonads The phylogeny of basal eukaryotes: I. The ribosomal cluster of the free-living diplomonad Trepomonas agilis: secondary structure of the 18S, 5.8S, and 28S molecules, and analysis JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 4294) AUTHORS Morin,L. TITLE Direct Submission JOURNAL Submitted (22-JUL-1997) Biologie cellulaire 4, Universite Paris-Sud, Orsay 91305, France STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF015455 BASE COUNT 769 a 538 c 695 g 688 t 6572 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~aaa auuaucaUGA GUAUCAGUGG AUC|CCUAGG 61 |CACAGAU|A U|-CGACGAA GAG|CGUU(- -AAUC-AA)A |GC-GAAUuu u-guug-|[- 121 cuaucaauc- uuagcuuaau gcga------ ---------- ---------- ----a--]-- 181 ---------- ---------- ---uaguc|A AUACUC-GAA Uacu(-uca- )gg-c|auuu 241 au-------- -(-------- ---------- ---------- -----gcac- ---)------ 301 ---a-ugugu u--ucagcgu -u-------- ------(------GCC CGU(CUUGAA 2581 AC)ACGG|AU UAAGG-AGUU ACUUUACAUU GCGAGCCa-a cacgu----( -------gau 2641 aa)------- ---------- ---g-cgug- ---------- --agggcgua GA(GAAA)UC 2701 U-[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------G 2881 ----auuuau ucaauca--- --ugccgcua uagggaga(u uua)ucgaac uauagucuca 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- -]-------- ---------- -UAGUAAUG- 3181 -UGA-UGUAA ACCCGAAAGG U-AGUG-AUC UUUA-UCUA- GC|UgAUACC GAAGCCGGUC 3241 (GAAA----- -----)GGUU GGU-GGAAGG UAG-CC---G CA-GUACUGA (CGUGCAAA) 3301 UCG-U-UUGU CGGAGCCGGA UAAAGGGucG uc-------- ---------- --c(GAAA-- 3361 --G)A---CU CAU-CGAACU AC--aGUAGC UGGUUACGUU CGAAAUUUCU --(CUCA)GG 3421 AUAGC-AACA -ACA--A|-- -|-uannnnn ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ------GCAG -C|-gg--ua GA-GAGAAUG AUUGGUAGA- -----uagug gaac--(cua 3721 ---)--guuc u-gca-|CUA ACUC-UCAAA CUCCG-AAUA |GCUGUga-a -cauugguac 3781 uaccgcaaga gua-gcuauu guc------- ---------- ---------- ---------- 3841 ---------- ---------- ----gagcaa U|CG-UUGUU -AGU-GGGCC -ACU-CUGG( 3901 G-UAAG)CCG GAU-UGGC-A AGGAGG(AU- UCAG)CCU-- UAAGUCA--- GGUUACG--G 3961 U|GCGC-AAC --A--AA-GG Cgcau-ga-- ---------- --gacu---- -AAACGACGU 4021 A--UGUUGAU GUUGACA-GC AGGAAGGUGG CC(AUAA-AA GUC)GGAAGC CU|C(UUA)G 4081 |GAGUGU(GU UACU)AC|-- -UCACUUGCC -GAAUCAAUA UGC|UC-GGA AAA--UGGAU 4141 C--GCG-CU- ACAGCCUUU| G|-------- --ACCUAC-- --ACCUGAC| (u cuugu)-guu gUGCU-AGGU AGAA------ 4441 --CGU|-GG- UG-GA-GA-- --------G- -C-G-CUU-- U------GAA GCCU------ 4501 U-UGC(GUGA -)CGUCAGG- UGG|A-gca| c--UCUCUA- AGUC-CAG-U CUUAAU|UG- 4561 AAGUAGUGCU -UAGUCCA-- -(acua---- ---------- ---------- ---------- 4621 --)--UGAAC |CACUUACC- G-GAG|AAGG UUU|CCAAGG CC-ACU(-AA AU-)AG|UCC 4681 UUGGGUUACU |-CGG-UCCU AAGc------ -------<-g uu-acu(--g aac-)g-cca 4741 cuuaaacg-- ---------- ---(------ -------)-- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----uC-GAA AGGGA-AG-U AGG(UUAAAA UU-)CCUAC| aAG----gcu ca-caua--- 4981 --[------- ---------- ---------- ---------- -u---gcg(- -gcga--)cg 5041 cg-------- ---------- ---------- ---------- ---------] --ugugcuuc 5101 ucau-----u ga----guuc cg-aucggu- aucccugg(G CUUUCGUC-) ccaguc-|ug 5161 a-uguaaucu cuaguugcga agcaguagag ucuu-uc--a ----gc(gua uc-)gcu-a- 5221 gagaa-gaca guaua----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- --------ca 5341 ggaaggcag( -uguauu-)c ugcuuguu-g aaccaguu-u -ggaac---- ucgcuaaaaa 5401 aug-ggaauc g<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ---------- ---------- ------cgcu a-au-ugu-- ga-gcaCCGU 5581 A|CUaaguaa ACC(GCAUCA )GG|UCU-CC AGGUU(AAGC -)AACCuca| AGUG--||A- 5641 GA-A--GAUA GC-GUGA-GC G-UGGGAACU CGGCAA-AAU -AGCUAUGAA AG(UUAG)CG 5701 AAAAAUAGU| GGCUCUGAA- ---------- --------<- cguucgucca agggca---- 5761 ---------- ---------- ---------a aaucauagaa gaugug---u gagagcgcug 5821 guggagca-a sus-uuugcg cu-ggaacuu cg-------- ---------- --gaagggug 5881 gagaucu--- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 ---------g -cgggcaaac aucau>---- -------uuu agaac-|G(- --CUU)CCAG 6601 CUAGGAGAAU C|-CGACUGU AU(AAUUA)A AACAUAGUUA AUGG|A--CU G|uca----- 6661 cugc-agg-- ---------- --U-GCAGUU CAUUGUUG-- AAUCCUGCCC AGU|GCUAUG 6721 AC-UGUUAA- ---aaucga- ----(gaga) -----uugau ----UUAAGC U|CUGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUU|U (UAA)GGUAG CCAAAUGCCU C|GUCCA-G( 6841 UAAUU)UUGG AC|GUGCAUG AAUGGAUUAA UGGGGUUCUC ACUGU-CCUC GCUCACAUCU 6901 UC|GCGAAAC C|aca-gACU CG(GGAA-CG GG)CGAGUgc uacUCU-CAG CGGGGCAAGA 6961 AGACCCUGUU G|AGCUUGAC UCC-|AGCUU U---GGAACU |GUAGAACGG UGAUGGUGGU 7021 AUAGCGUACA GGGgaga--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -uucg)---- 7141 ---------u c-aacaaugu aa-caCCCUG |ACACUAUU- -CAUUG-UUC UGCUAAc--- 7201 ---------- ---------| --g -ACAC-UUCU A-GGUG-GGG AG-UUUGUCU G(GG-)CGGA 7561 GaC|GCCUGC (UAAAGUUUA AC-)GCAG-G A|G|U|CCA- AUAGU-AAGC |UCAGU-AUA 7621 -U(UCA---- GAAA)UUAUA CGUAGA|GC( A|A--AAGA) GUAAAAG-CU U-AUCUGACU 7681 -GAGUUCA(u c--agugg-- )UGAACUCAG ACGU(-GAAA )GCGUGG|UC --UAU|CGA- 7741 UCCUUUAc-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -aua-ugc(- -AUGU-A--A U---)----- ---------- 7861 -----GCA|U CUAGAG-gug aC|aGA--AA AGUnnnnn|n nnn|nnnnnn nn|nnnnnnn 7921 nnnnnnnnnn n(nnnnn)nn nnnnnnnnnn nnnnnnnnnn nnnnnnnn|n nn-n|n|nnn 7981 nn|nnnn|nn n-nnnnn(nn -nn-)nnnnn nnnn-nnnn| nnnnn(nnnn n)nnnnnnnn 8041 n-nnnnnnnn nnnnnnnnnn nnnnnnn--- ---------n nn(nnnn)nn nnnnnnnnnn 8101 nnnnnnnnnn nnnn---<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->-nnnn nn-nn-nn-n nnnnnnnnnn nnnn(nnnnn 8281 n(nnnn)nnn nn-)nnnnnn n|nnnnnnnn nnnnnnnnnn nnn|-nnnnn n(nnnn)nnn 8341 nnnnnnnnnn n-nnnnnnn- nn-nnnn--n nnnnnnnnnn n(nnnnnnnn n-n-n)nnnn 8401 nnnnnnnn-n nnnnn----- nnnn--nnnn n<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~)~ ~~~~~~~~~> ~~|~~~~~~~ ~~~~~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (2)-Entamo 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS E.histol.1 9262 bp RNA RNA 11-JAN-191 DEFINITION Entamoeba histolytica. ACCESSION No information KEYWORDS No information. SOURCE Entamoeba histolytica. ORGANISM Entamoeba histolytica. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X65163 ID EHRRNA standard; RNA; INV; 6331 BP. XX AC X65163; XX DT 25-APR-1993 (Rel. 35, Created) DT 25-APR-1993 (Rel. 35, Last updated, Version 2) XX DE E.histolytica rRNA XX KW 18S ribosomal RNA; 28S ribosomal RNA; 5.8S ribosomal RNA; KW ribosomal RNA. XX OS Entamoeba histolytica OC Eukaryota; Animalia; Protozoa; Sarcomastigophora; Sarcodina; OC Rhizopoda; Lobosa; Gymnamoeba; Schizopyrenida; Tubulina; OC Entamoebidae. XX RN [1] RP 1-6331 RA Bhattacharya S.; RT ; RL Submitted (17-MAR-1992) on tape to the EMBL Data Library by: RL S. Bhattacharya, Jawaharlal Nehru University, School of RL Enviromental Sciences, New Dehli, 110067, INDIA XX RN [2] RP 1-6331 RA Ramachandran S., Bhattacharya A., Bhattacharya S.; RT "Nucleotide sequence analysis of the rRNA transcription unit of a RT pathogenic Entamoeba histolytica strain HM-EIMSS"; RL Nucleic Acids Res. 21:2011-2011(1993). XX FH Key Location/Qualifiers FH FT source 1..6331 FT /organism="Entamoeba histolytica" FT /strain="HM 1-IMSS" FT /dev_stage="trophozoites" FT /clone="p(ssrnag),pHM-a,pLSrnaE1,plsrnaE2,plsrnaE3" FT /isolate="Clone-6" FT rRNA 522..2467 FT /product="18S ribosomal RNA" FT misc_feature 2468..2590 FT /note="transcribed spacer sequence 1" FT rRNA 2591..2740 FT /product="5.8S ribosomal RNA" FT misc_feature 2741..2865 FT /note="transcribed spacer sequence 2" FT rRNA 2866..6331 FT /product="28S ribosomal RNA" XX SQ Sequence 6331 BP; 2415 A; 813 C; 1302 G; 1792 T; 9 other; BASE COUNT 1355 a 480 c 744 g 1036 t 5647 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~AAAU AUUACUUUGG AUA|GUUUAG 61 |UUUCCUG|G G|-CGAUGAA GAA|CGCA(- -AUGA-AU)U |GC-GAUAAG UG-auag|[- 121 gaacaauaaa a---ugugaa ---------- ---------- ---------- -------]-- 181 ---------- ---------- ---uaucc|A AAAUUU-GAA Ugcu(ugaa- )ag-u|auac 241 uua-----ug a(-------- ---------- ---------- -----acu-- ---)uc---- 301 --aa-gguau ---auaugau -a-uu-caau auc---(--- -----c---/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- )---gauuug agu-aucg-u aAG----AGG 481 AC|UCCCUUA -A--CU|UA( AGCA)UA-UC AAUAAG-G-G A-AGGAAG-- --AAAAAAU( 541 AAC-A)AU-G AU|UUCUUAA GU---AAU(G GCGA)AUG-A A-----AAAG AAAA------ 601 ---------- ---------- ---------- ---------- -AGACCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---aguugau aagaauggau --aauuguaa a--aggguua gaagaauaca (gcaa)ugua 781 ugaggcuagu cu-uaaauua uu-cagagug uaacuaau-- agaaaagcua uauuu----- 841 --aaaagg-- ---------- ---------- ---------- ---------- gauaa-uuua 901 aauu-gaa-- --u-uca-g( a-(acgaau- )a)uug-a-- ---------- --------GC 961 --|C(AGA)G |AGAG-(UGA AAGC)-CUCG UC|--aauuu agauauaucu u-----gaaa 1021 agaau----- -augguuu-a gaaaa----- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-Aaauuu auU(----UG 1141 GAAG)Uauaa aucGAA---- -aaGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 AUaguauu-- ---------- ---------- ---------- )CAU-CAAAG UCU----AAA 1381 UA-------- ---------- UUACA-GGAA AACUGAUAGC AAAG-AAGUA CU(GUGA)A- 1441 G-GAAAACUU -AAA-AGAAC UUU(gg-aa- )AAAG-AGUG --AAAAGAGC U-UGAAAG-A 1501 GUAAU-AUG< ug---aacgg auaauuuaua agaaaaau-a guggaa---- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- -uauguuaua aauaaagaug ugaaaagauu agauauauau aag--uagua 2221 uauuuaauaa gauuauguu- gaaauuuau- -aauauaaga aauuauuaag agcaa-gaga 2281 auuauuucau uuauagugau ua-uuaauaa acgaggauau uagga(gaaa -)ucuuagua 2341 uucaauugug aauuaaaa-- ----guaaaa auccgauaau aau-ggaaug ---auaaaag 2401 c-uauuuaag guaa-gauua --auaaauuu aaucc----- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---cgagaau 2521 agaa-acu-- --------cu uga-agaa-g uaaauuaucu >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUGGAU GCGAAUGa-g aauagc---( ------agga 2641 aa)------- ---------- ---g-cuau- ---------- --aacauGAA GA(GAAA)AC 2701 kA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ------aaaa cuauga--ga gugua----- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----gaaa-- ----)----- ---------- --ua-cauuu -agcaauagu 3061 a--------- ---------- ---------- ---------- -------ucu ---------u 3121 ucaau----- ---------- -------a-g a]-------- ---------A GAAGUAAAU- 3181 -AUG-UUAGG ACCCGAAAGA U-GGUG-AAC UAUA-CUUG- AA|C-GGAUU GAAGCCGAAG 3241 (-AAA----- -----)CUUU GGU-GGAAGA UUC-AC---G CA-GUGUUAA (CGUGCAAA) 3301 UUA-C-UUGU CAUAUUUGAG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACU AUCUAGUAGC UGGUUCCACC UGAAUAUUCC --(CUUA)GG 3421 AAGGU-CAAA -GUA--u|-- -|-uaa---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------u 3661 --aguAUUGA -U|UGG--UA AA-GAUAAUG AUUAGGUGU- -----AAUGG GUGA--(gua 3721 uau)--UCAC U-CAA-|CAU CUUG-UCAAA CUAUG-AAUA |AACAAAgaa -gaauucuc- 3781 aguguuaaau acacuucagg aauuuaaaua ---------- ---------- ---------- 3841 ---------- ---------- ----uaaac- a|UA-CUUUG -AAU-CGGCC -AAG-UCUG( 3901 G-UAAG)CAG GAC-UGGC-G AUGCGG(GA- UGAA)CCG-- AACGUCG--- AGAUAAA--G 3961 U|GCCA-AAA --A--GA-AA CAUAA-cg-- --------ag uaccac---- -AAAAGGUAU 4021 U--CAUUCAU AUUGACA-AU AGGACGGUGG CC(AUGG-AA GUC)GGAAAC CG|C(UAA)G 4081 |GAAUGU(GU AACA)AC|-- -UCACCUAUC -GAAUGAAUG AGU|CC-UGA AAA--UGGAU 4141 G--GCA-UU- AUAAUUUCU| U|-------- -aACUGAU-- --ACUCGAC| (- -----)cauu uuaac-gAGU AAGGaaacga 4441 aaUGG|-CG- UA-AG-GA-- -ca---acaa aA-G-Uag-- u------AAA GAUU------ 4501 U-AAA(GUAA -)UUUAGAU- UGA|A-ACU| G--UCCUUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UACUAAGA- A(gaggaaaa aaac------ ---------- ---------- 4621 --)AUCUUAG |AACUGAAGA G-GAG|AAAG GUU|CCUAAA CA-ACA(-UU ACU)UG|GAU 4681 UAGGGUGAAU |-CGA-UCCU AAau------ -------<-u acagau(-gg aa)auc-cuu 4741 a---agaaa- --uauauaag ugac------ ---------- (auaua---) guca-auaua 4801 agg------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----auuGAA AGGGA-AU-A AGA(UUAAUA GU-)UCUUA| -AU----caa ga-gaau-ua 4981 au[gauua-- ---------- ---------- aa-----u-- -c---uua(- -gaaa--)ua 5041 agauu----- --aaaucgaa ua----aaau g(guaa)cau a----uc-a] uga-acuuua 5101 aaau-----g gag--uguga aaau-cuac- -GG-AAGA(G UUCUCUUU-) UCUUCU-|UA 5161 A-caaaag-- --------ua aau|u---cc acug--aaau ----ga(auc aa-)ucaga- 5221 ga-ag-ugg- aauuu----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- -----auug- ----gcuu-u gUA-----AG 5341 aaAUUCAAC( -auaug--)A UUGAAUu--g ugguau---u -uuugc--ag ucuu-cauaA 5401 AAA-uuaaag -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 --ggaaucuu agcauaaagc uaau------ ----uaaaga --au-ucu-- uu-ugCUCGU 5581 A|CU--AAUA ACC(GCAACA )GG|UCU-CC AAGAA(GCAA A)AUCUUU-| AGUUA-||Aa 5641 UA-G--AAUA AC-GCAG-GU A-AGGGAAGU CGGCAA-CAU -AGCUCUGUA AG(UUAG)CA 5701 AGAAAGAGU| AGCUCUGGU- ---------- -(-----)---- -------AUC AGAACU|U(- ---UA)AAGG 6601 UUAGGGGAAU C|-CGACUGU UU(AAUAA)A AACAUAGCAU UCUG|A--UA A|AUC(---u 6661 aaaa)GGU-- ---------- --U-CAUUAC AGAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---gguaau- ----(gaaa) -----uuuac ----UUAAGC G|CGGGUUAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUCAC CGUGAUUCCC ACUGU-CCCU AUCUGCAAUC 6901 UA|GUGAAAC C|aca-gUCA AG(GGAA-CG GG)CUUGAUU -G-GAA-CGG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AAUUU A---UCA--U |GUGAAAUCG AUUUUUUGGU 7021 AUAGGCUAGG UGGGAGAc-- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- --uuu)---- 7141 --------gu c-AAACGUGU AA-UACCACC |ACUAGAAA- -UacUA-UUU CACUCAu--- 7201 ---------- ---------| --u GAAAG-AGAU A-GACG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UACAAGAUA AC-)GCAG-G U|G|U|CCA- AAGAU-GAAC |UCAAU-GAG 7621 -G(ACA---- GAAA)CCUCA UGUAGA|AU( A|U--AAGG) GUAUAAG-UU C-AUUUGAUU 7681 -AUUGAUU(c c--aguac-- )AAUCAAUAA CUCU(-GAAA )UGAUGG|CC --UAA|CGA- 7741 UCCCUAAGau uuuuaauuag aaagaauuua aaacauauua gauuuaucug augugugaga 7801 ccguaaggug auuucuaguu aauc-cuu(- -uaau-a--a u---)----- ---------- 7861 -----aag|g CUUGGG-GUG UC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(CUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCC|AU U-UCAAG(CA -GA-)AUUGA AAAA-AGGU| AUGAU(UGUU C)ACCAUUUA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACC GUUUC-g-aaag ua-uu-ua-G AUAGUAGCAC AACU(CAGUA 8281 C(GAGA)GGA AC-)CGUUGU G|UCACGCCA CUGGAUUAUU CAA|-UUAUU U(GAUC)AAA 8341 UAGUGUUGAG A-AUCUAAC- AC-GUGU-uG AAAUAAUGGC U(GAAAGCCU CUC-A)AGCC 8401 AGAAUUUC-G UCUA-----g auga--auac u<---uuguc uuuuuc-u-u guuacuuuag 8461 uacaauugaa -aauuauaua cguuguauuu auuaucucgu gu-------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---auuacuc uaucaaaagg guagugaa-- 8641 ------uacu gaguua-aca a--------- aauuuaaag> --|------( ---)------ 8701 cauaacuguu |gcuua(-ua gacga)ug-g cauc-----a gaa|aucggu g---uwguaa 8761 gc-u-unnnn nn-nn----- ---------- -----nnn-n nnn--nnnnn ---------- 8821 -------nnn nnnnnnnnnn -nn|n-nnnn -|----nnnn n--nn--nn- nnn-nnnnnn 8881 n----|---- ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS E.histol.2 9262 bp RNA RNA 15-SEP-1989 DEFINITION Entamoeba histolytica. str. HM-1:IMSS; 25S ribosomal RNA; ribosomal RNA. ACCESSION M21126 J04003 KEYWORDS 25S ribosomal RNA; ribosomal RNA. SOURCE Entamoeba histolytica. str. HM-1:IMSS. ORGANISM Entamoeba histolytica. REFERENCE 1 (bases 1 to 273) AUTHORS Huber,M., Koller,B., Gitler,C., Mirelman,D., Revel,M., Rozenblatt,S. and Garfinkel,L. TITLE Entamoeba histolytica ribosomal RNA genes are carried on palindromic circular DNA molecules JOURNAL Mol. Biochem. Parasitol. 32, 285-296 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: M21126 Draft entry and computer readable copy of sequence [1] kindly provided by M.Huber (10-24-88). NCBI gi: 158981 BASE COUNT 94 a 40 c 62 g 77 t 8989 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~G ACCCGAAAGA U-GGUG-AAC UAUA-CUUG- AA|C-GGAUU GAAGCCGAAG 3241 (GAAA----- -----)CUUU GGU-GGAAGA UUC-AC---G CA-GUGUUAA (CGUGCAAA) 3301 UUA-C-UUGU CAUAUUUGAG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACU AUCUAGUAGC UGGUUCCACC UGAAUAUUCC --(CUUA)GG 3421 AAGGU-CAAA -GUA---|-- -|uuaa---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------u 3661 --aguAUUGA -U|UGG--UA AA-GAUAAUG AUUAGGUGU- -----AAUGG GUGA--(gua 3721 uau)--UCAC U-CAA-|CAU CUUG-UCAAA CUAUG-AAUA |AACAAAgaa -gaauuc~~- 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ---------~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~-~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ 3901 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~~--~ 3961 ~~~~~~~~~~ ~-~~-~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---- ~~~~~~~~~~ 4021 ~--~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~-~~~ ~~~--~~~~~ 4141 ~~~~~~-~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~-- -~~~~~~~~~ ~~~~~~~~-~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|-~~~ ~~~~~~~~-- -~~~~~~~~~ ~~-~~~~~~~ ~----~-~~~ ~~~~----~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ -~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~-~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~---- ---------- --------~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~-~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~- -----~~~~~ ~~~~~~~~~~ ~~-----~-- -~---~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 5101 ~~~~----~~ ~~~-~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-|~~ 5161 ~~~~~~~~~- ------~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ---~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ---------- ---------- ---------- 5281 ---------- ---------- -------~~~ ~~~~~~~~~- ----~~~~~~ ~~~-----~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~--~~ ~~~~-~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~-~~~~~~~ 5581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 5641 ~~~~--~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ -~~~~~~~~~ ~~~~~~~~~~ 5701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 5821 ~~~~~~~~-~ ~~~-~~~~~~ ~~-~~~~~~~ ~~-------- ---------- ---~~~~~~~ 5881 ~~-~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~---~>~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~-~~~ ~|~~~~~--~ 6661 ~~~~~~~~-- ---------- --~-~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 6721 ~~-~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6841 ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~-~~~-~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~-|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~--~~- -~~~~~~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ -~~~~~-~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7561 ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~--~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~|~~~- 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~-~~~~ ~~~-~----- ---------- 7861 -----~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ 7981 ~~~~~~~|~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 8281 ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 8701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~- ~~~|-~~~~~ ~|~~~~~~~~ ~--~~~-~~~ ~~~-~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (2)-Euglen 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS C.fascic.1 9262 bp RNA RNA ~?~???? DEFINITION Crithidia fasciculata. ACCESSION No information KEYWORDS No information. SOURCE Crithidia fasciculata. ORGANISM Crithidia fasciculata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: Y00055 BASE COUNT 1043 a 934 c 1146 g 957 t 5182 others ORIGIN 1 |--------- ---------- ---------- -----AACGU GUCGCGAUGG AUG|ACUUGG 61 |CUUCCUA|U C|uCGUUGAA GAA|CGCA(- -GUAA-AG)U |GC-GAUAAG UGguau-|[- 121 caauugcaga a-ucauucaa u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---uaccg|A AUCUUU-GAA CGC-(aaacg )-g-c|gcau 241 gggagaagcu c(-------- ---------- ---------- -----uuuu- ---)gaguca 301 uccc-cgugc ---augccau -a-uu-cuca guguc-(--- ---gaac--/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------aca )--gac-cug agu-gugg-c aGG----ACU 481 AC|CCGCCGA -A--CU|UA( AGCA)UA-UU ACUCAG-C-G G-AGGAAA-- --AGAAAAC( 541 AAC-C)GU-G AU|UCUCUCA GU--gAGC(G GCGA)GCG-A A-----GAGG GAAa------ 601 ------g--- ---------- ---------- ---------- -AACUCG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----uugcc gaaucggguc ---(uuacaa )---ggccuu gaguuguggc aaugauauca 781 ---------u uu-cgugguu gg-ugcagga auggcgaaau ucaagcgcaa agcaaa--cc 841 cguugcug-- ---------- ---------- ---------- ---------- aa-------u 901 a----caacc cuu-c-a-u( g-(-ugag-- )u)auuga-- ---------- --------GC 961 --|C(AAA)G |AAGG-(UGU UAGC)-CCAU UG|------- ---agccaua ------aacc 1021 ugagcgccuc a---ugaa-c uguauuaaga ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGCACU GUU(----UG 1141 GGAA)UGCAG UGUCAA---G UUGGCA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAUUUGU-- ---------- ---------- ---------- )CUG-CUAAA GUU----AAA 1381 UA-------- --------CA GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUUU GAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-AAUAGAAC C-UGAAGU-C 1501 GUGACAACG< ac---aaugg aaguaccucc a--uuucg-u ------uuuu gccagaacca 1561 gcccuacu-- -------gca u--uaucucg ucgga(cguc aaac-)ucc- ggcgggcaac 1621 g---aagugc aagaacaaac au-ugggugu uggug----- aaaugggcgg aguauauggg 1681 cugugcacgg c-(gcaa--- ----)-gccg cgagcacggu uucuucucu- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------gug au-ucuc--- caugcuggcg 2521 -cag------ ---------- aaa-aug--- gggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCAAGGGa-g aagaua---( u-ggu-ugcc 2641 ag)------- ---------- ---u-acuu- ---------- --cuCUCGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcaaaau -gcaucugu- ggugugcaca cgucaaaucc guuuga---- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -------uuu gcccaacacc ga-cc----- 3121 --ggc-ccuc cgug------ -gg--uugcg u]-------- ---------U GGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CCCA GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU AUGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACAU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUa--|-- -|-gua---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------g 3661 a-aguAUUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGA- -----CUUGG UGUU--(cuu 3721 a-g)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAAAcaa -accguacc- 3781 uuagccaacu ---------- ----gcaagg u---cggaaa gaaaag---- ---------- 3841 ---------- ---------- ----AAUuag a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGG--- AUAUGUG--G 3961 C|GUCA-AAA C-uuaUG-GG CUCAUucu-- ------cgau acguga---- -AAAGGGUGU 4021 U--GGUGGAU AUGGACA-GU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GGC|CC-CGA AAA--UGGAU 4141 G--ACG-CU- UAAGCCCAA| U|-ua-guga uuGCCCAU-- --UAUUCCU| (- -----)gccc uuccg-aUGU AGAU------ 4441 --GUG|GC-C UG-GA-GG-- --------u- -c-A-GGa-- c------GAA GCUU------ 4501 AuGGC(GUGA -)GCCUAAGa UGG|A-CCG| G--CCUCUA- GUGC-AGA-U CUUGGU|UG- 4561 GCGUAGCAAA -GAUCUAAC- G(gaga---- ---------- ---uau---a cucaacaugc 4621 aa)CGUUGGA |UACUGGAGC G-GGG|AAGG AUU|UCGUGC CA-ACG(-GC ACU)CG|UAC 4681 ACGAGUUGUU |-CGGaaacu gagc------ --------------- ---------- ---------- --------cc --ca-acu-- gc-agaCCGU 5581 A|CU--CAUC ACC(GCAUCA )GG|UCC-CC AAGCA(UAGA A)UGCUCU-| GGUAC-||A- 5641 UA-G--AGAA AG-GUACaCU C-AGGGAAGU CGGCAA-AAU -AGAUGCGUA AG(UUCG)CA 5701 AGAAGCAUU| GGCUCUGAG- ---------- -(-----)---- -------CUC AGAACU|G(- ----c)uuac 6601 ggcGGGGAAU C|-CAACUGU AU(AAUUA)A AACAUAGGUU UGUG|A--UG C|AUC(---c 6661 aagu)GGU-- ---------- --G-UAUGUC GCAAACUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---cgugac- ----(gaga) -----uucac ----CGACGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCUU-C( 6841 CAAUU)AGAG AC|GCGCAUG AAUGGAUUAA UGAGAUUCCC UCUGU-CCCG AGUUACUAUC 6901 UA|GCGAAAC G|ACA-GUCA AG(GGAA-CG GA)CUUGAAG -G-GCU-AAG CGGGGAAAGA 6961 AGACCCUGUU G|AGUUUGAC UCC-|AGUCU G---GCU-CU |GUACGGCGA CAUCUGAGGU 7021 GUAGUAUAGG UGGAAGC--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -GCGA)---- 7141 ---------G C-ACAAAUGA AA-UACCACC |ACUCGGAA- -CGUUG-CUU UACUUAu--- 7201 ------(--- --)------| --a GACAucUGCC A-GAUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-U|AUCUGU (UACACGACA AC-)GCAG-G U|G|U|CCU- AAGGC-GAGC |UCAGU-GGG 7621 -A(ACA---- GAAA)UCUCA CGUAGA|AC( A|C--AAGC) GUAAAAG-CU U-GCUUGAUU 7681 aACGAUUU(c c--aguac-- )GAAUCGAGA CUGC(-GAAA )GCAAG-|GC --CAG|CGA- 7741 UCCUUUGc-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- gaagaauagg aaau-aug(- -aACA-A--A U---)----- ---------- 7861 -----cau|a cCAGAG-gug uC|AGA--AU AAUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCGGCCAAGC G(UUCAU)AG CGACGUCGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AACC|UA G-CGCCG(CA -GA-)AGACG CUAA-GGGU| UGGAU(UGUU C)ACCCACUG 8041 ACAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUGGUU 8101 UUACCCUACU UAGCU-ggcaGG CA-UC-gu-G AGGGAAGUAU GGGG(UAGUA 8281 C(GAGA)GGA AC-)UCCCAU G|CCGUGCCU CUAGUUUCUG GGG|-UUUGU C(GAAC)GGC 8341 AAGUGCCCCG A-AGCCAUC- GC-ACGG--U GGUUCUCGGC U(GAACGCCU C-U-A)AGCC 8401 AGAAGCCA-A UCCC-aa-ga ccaG--AUGC C --|------( ---)------ 8701 -acaacgucc |cucuc(-ca aacga)ga-g aauau----g cau|gggcug gcaugagc-- 8761 -g-g-caugc uu-ca----- -cuccggugg ggcucgag(g ggca)cuu-a cgucccgagg 8821 cgc---ugaa ----ccuug- agg|-ccuga -|--aauuuc a--u-g-cuc ug----g-ga 8881 cuaaa|---- ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS C.fascic.2 9262 bp RNA RNA 30-SEP-1988 DEFINITION Crithidia fasciculata.; 28S ribosomal RNA. ACCESSION M19223 J03648 KEYWORDS 28S ribosomal RNA. SOURCE Crithidia fasciculata. ORGANISM Crithidia fasciculata. REFERENCE 1 (bases 1 to 409) AUTHORS Baroin,A., Perasso,R., Qu,L.-H., Brugerolle,G., Bachellerie,J .-P.P. and Adoutte,A. TITLE Partial phylogeny of the unicellular eukaryotes based on rapid sequencing of a portion of 28S ribosomal RNA JOURNAL Proc. Natl. Acad. Sci. U.S.A. 85, 3474-3478 (1988) STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: M19223 Draft entry and printed copy of sequence for [1] kindly provided by A.Baroin, 26-APR-1988. NCBI gi: 176247 BASE COUNT 121 a 84 c 113 g 90 t 8854 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~nca )--gac-cug agu-gugg-c agg----ACU 481 AC|CCGCCGA -A--CU|UA( AGCA)UA-UU ACUCAG-C-G G-AGGAAA-- --AGAAAAC( 541 AAC-C)GU-G AU|UCUCUCA GU--gAGC(G GCGA)GCG-A A-----GAGG GAAa------ 601 ------g--- ---------- ---------- ---------- -AACUCG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----uugcc gaaucggguc ---(uuacaa )---ggccuu gaguuguggc aaugauaucc 781 ---------u uu-cgugguu gg-ugcagga auggcgaaau ucaagcgcaa agcaaa--cc 841 cguugcug-- ---------- ---------- ---------- ---------- aa-------u 901 a----caacc cuu-c-a-u( c-(-guga-- )u)auuga-- ---------- --------GC 961 --|C(CAA)G |AAGG-(UGU UAGC)-CCAU UG|------- ---agccaua ------aacc 1021 ugagcgccuc c---ugaa-c uguauucaga ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGCACU GUU(----UG 1141 GGAA)UGCAG UGUCAA---G UUGGCA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAUUUGU-- ---------- ---------- ---------- )CUG-CUAAA GUU----AAA 1381 UA-------- --------CA GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGU~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~]~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 3361 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.vivax 9262 bp RNA RNA 26-OCT-1995 DEFINITION Trypanosoma vivax.; . ACCESSION U22316 KEYWORDS . SOURCE Trypanosoma vivax. ORGANISM Trypanosoma vivax. REFERENCE 1 (bases 1 to 4645) AUTHORS Urakawa,T. and Majiwa,P.A. TITLE inferred from the sequences of ribosomal RNA genes Phylogenetic relationships among Salivarian trypanosomes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 4645) AUTHORS Urakawa,T. TITLE Direct Submission JOURNAL Submitted (06-MAR-1995) Toyohiko Urakawa, Molecular Biology, International Livestock Research Institute (ILRI), Naivasha Road, Nairobi, Kenya STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U22316 NCBI gi: 1040857 BASE COUNT 458 a 650 c 671 g 350 t 7133 others ORIGIN 1 |--------- ---------- ---------- -----AACGU GUCGCGAUGG AUG|ACUUGG 61 |CUUCCCG|G U|uCGUUGAA GAA|CGCA(- -GCAA-AG)C |GC-GAUAGU ugguau-|[- 121 gaccugcaga a-ccacucga u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---uaccc|A GUCUUU-GAA CGC-(aaacg )-g-c|gcau 241 gggagcagcc c(-------- ---------- ---------- -----cccg- ---)ggguca 301 uccc-cgugc ---augccgc -a--gucuca guguc-(--- ---ga----/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------aca )--gac-cug agu-gcgg-c agg----ACC 481 AC|CCGCCAA -A--CU|UA( AGCA)UA-UU ACUCAG-C-G G-AGGAAA-- --AGAAAAC( 541 AAC-C)GU-G AU|UCCCUCA GU--cAGC(G GCGA)GCG-A A-----CAGG GAca------ 601 ------c--- ---------- ---------- ---------- -AACUCG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----cugcc gaaucgcgcc ---(ucaag- )---ggcgcc gaccuguggc acgcaacgcg 781 gcgcac-gg- --------cu gg-cagcggc gcggcgcaau ucaagcgcaa agcaaa--cg 841 cguugcug-- ---------- ---------- ---------- ---------- -------gcc 901 a----caccc cuu-c-a-u( g-(-ugag-- )u)auuga-- ---------- --------GC 961 --|C(AGG)G |AAGG-(UGA GAGC)-CCAC UG|-caccgc cgccccccgc c-----gcca 1021 ccgcgcgccg cccacc---- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGCACU GCU(----UG 1141 GGAG)UGCAG UGUCAA---G C-GGCA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAUUUGC-- ---------- ---------- ---------- )CUG-CCAAG GUU----AAA 1381 CA-------- --------CA GAGCG-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUUU GAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-CAUAGAAC C-UGAAAU-C 1501 GCGACAACG< ac---aaugg aagcgccucc c--ucaca-c cggccagccc cgcgccccca 1561 ccucauccuc ugugccagcc acuccgcgcg gggcagcauc cgcgcggcag cggcacaccc 1621 ggggcgcggg cgagccugcg gagcgugggg cgcgucgaca cgcggcgugc ccgcucc--- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------gcg cccucuc--- ggcgcuggcg 2521 -acg------ ---------- gcg-acgg-- -ggcgccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCaagggc-a gaggc----( a-cgc-cuca 2641 g-)------- ---------- -gcc-ucuc- ---------- --cgcccGCA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -acgcgcucc -gcguccgu- ggcgcgcgca c--------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ------gcgu gcucagcgcc gg-cc----- 3121 --ggc-cccc cgcg------ -gg--cugcg c]-------- ---------U CGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGC GAAGCCCGGG 3241 (GAAA----- -----)CCCG GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU ACGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACGU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUc--|-- -|-gccg--- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------ug 3661 a-aguACUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGC- -----aUUGG UGUU--(cuu 3721 g-c)--AGCA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAGCgcg cgcgcccuuc 3781 gc--ccgcc- ---------- ------gcaa gg--gcgcgc cucggccgag ---------- 3841 ---------- ---------- ----uuauug g|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCC-- GUUAGGG--- AUAUGUG--G 3961 C|GUCC-AAG C-uuccG-GG CUCAUucu-- ------cgau acguaa---- -aaAGGGUGU 4021 U--GGUGGAU AGGGACAUGU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GGC|CC-CCA AAA--UGGAU 4141 G--ACG-CU- CAAGcccga| c|-ac-gcga ugGCCCAU-- --UAUUCCU| (- -----)gccc cucca-aUGU AGAC------ 4441 --GUG|GC-G UG-GG-GG-- --------u- -cag-g-c-- c------GAA GCCG------ 4501 AUGGC(GCGA -)GCCGCGg- UGC|A-ccg| G--CCCCCA- GUGC-AGA-U CUUGGU|UG- 4561 GCGUAGCAAU -GAUCCAAC- G(gcacgca- ---------- ---------- -cacgcacac 4621 aa)CGUUGGA |UGCUGGAGC G-GGG|AAGG AUU|UCGUGC CA-ACG(-GC ACU)CG|CAC 4681 ACGAGUUGUU |-CGGacaCU GAGC------ -------~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Leptomo.sp 9262 bp RNA RNA 11-JAN-191 DEFINITION Leptomonas.sp. ACCESSION No information KEYWORDS No information. SOURCE Leptomonas.sp. ORGANISM Leptomonas.sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L19409 LOCUS TRLRR24S 993 bp ss-rRNA RNA 12-JUN-1993 DEFINITION Leptomonas sp. 24S ribosomal RNA alpha subunit ACCESSION L19409 KEYWORDS 24S ribosomal RNA; 24S ribosomal RNA alpha-subunit. SOURCE Leptomonas sp. rRNA. ORGANISM Leptomonas sp. Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 993) AUTHORS Fernandes,A.S., Nelson,K. and Beverley,S.M. TITLE Molecular evolutionary comparisons suggest multiple origins of vertebrate parasitism in trypanosomatid protozoa JOURNAL Unpublished (1993) FEATURES Location/Qualifiers rRNA <1..>993 /product="24S ribosomal RNA alpha subunit" /gene="24S rRNA" /evidence="EXPERIMENTAL" source 1..993 /organism="Leptomonas sp." /sequenced_mol="rRNA" BASE COUNT 277 a 214 c 289 g 213 t ORIGIN BASE COUNT 277 a 214 c 289 g 213 t 8269 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~|~(~~~)~ |~~~~~(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~A GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUuu gAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-AAUAGAAC C-UGAAGU-C 1501 GUGACAAAG< ac---aaugg aa--guaccu ccauuuca-a cggccagaa- -ccaacccua 1561 cu-------- -------gca u--ua-ucua ccggg(gguc aaaa-)ucc- ggugggcaac 1621 g---aagugc aagaacaacc a--ugggucu uggug----- aaaugggcgg aguuauuggg 1681 cuaugcacgg c-(gcaa--- ----)-gccg cgagcauggu uucuucucc- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------gug au-gcuc--- cauguuggcg 2521 cau------- ---------- ggaaaug--- gggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCAAGGGa-g gagaua---( u-ggu-ugcc 2641 ag)------- ---------- ---u-acuu- ---------- --cuCUCGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcaaaau -gcaucugu- ggugugcaca cgucaaaucc guuuga---- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -------uuu gcccaacacc ga-cc----- 3121 --ggc-ccuc cgug------ -gg--uugcg u]-------- ---------U GGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CCCA GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU AUGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACAU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUa--|-- -|gua----- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------g 3661 a-aguAUUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGA- -----CUUGG UGUU--(cuu 3721 a-g)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAAAcaa -accguacc- 3781 uuagccaacu ---------- ----gcaagg u---cggaaa gaaaagaauu aa-------- 3841 ---------- ---------- ---------- a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(GA- UGAA)CCG-- CUUAGGG--- AUAUGUG--C 3961 G|GUCAAAAC u-ua-ug-gg cuCAUucu-- ------cgau acguga---- -AAAGGGUGU 4021 U--GGUGGAU AUGGACA-GU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GG~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS E.monterog 9262 bp RNA RNA 11-JAN-191 DEFINITION Endotrypanum monterogei. ACCESSION No information KEYWORDS No information. SOURCE Endotrypanum monterogei. ORGANISM Endotrypanum monterogei. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L19407 LOCUS ENORR24S 991 bp ss-rRNA RNA 10-JUN-1993 DEFINITION Endotrypanum monterogeii 24S ribosomal RNA alpha-subunit. ACCESSION L19407 KEYWORDS 24S ribosomal RNA; 24S ribosomal RNA alpha-subunit. SOURCE Endotrypanum monterogeii rRNA. ORGANISM Endotrypanum monterogeii Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 991) AUTHORS Fernandes,A.S., Nelson,K. and Beverley,S.M. TITLE Molecular evolutionary comparisons suggest multiple origins of vertebrate parasitism in trypanosomatid protozoa JOURNAL Unpublished (1993) FEATURES Location/Qualifiers rRNA <1..>991 /product="24S ribosomal RNA alpha subunit" /gene="24S rRNA" /evidence="EXPERIMENTAL" source 1..991 /organism="Endotrypanum monterogeii" /sequenced_mol="rRNA" BASE COUNT 274 a 215 c 288 g 214 t ORIGIN BASE COUNT 274 a 215 c 288 g 214 t 8271 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~|~(~~~)~ |~~~~~(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~A GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUuu gAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-AAUAGAAC C-UGAAGU-C 1501 GUGACAAAG< ac---aaugg aa--guaccu ccauuuca-a cggccagaa- -ccagcccua 1561 cu-------- -------gca u--uaucccg ucggg(gguc aaaa-)ucc- ggcgggcaac 1621 g---aagugc aaaaacuu-- ---ugggucu uggug----- aaaugggcgg aguauuugag 1681 cugugcacga c-(gcaa--- ----)-gucg caagcacggu uucuucucc- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------gug au-gcuccau guuggcgau- 2521 ---------- ---------- ggaaaug--- gggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCAAGGGa-g gagaua---( u-ggu-ugcc 2641 ag)------- ---------- ---u-acuu- ---------- --cuCUCGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcaaaau -gcaucuguu ggugugcaca cgucaaaucc guuuga---- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -------uuu gcccaacacc ga-cc----- 3121 --ggc-ccuc cgug------ -gg--uugcg u]-------- ---------U GGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CCCA GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU AUGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACAU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUa--|-- -|gua----- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------g 3661 a-aguAUUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGC- -----AUUGG UGUU--(cuu 3721 a-g)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAAAcaa -accgugcc- 3781 uuagccaacu ---------- ----gcaagg c---cggaaa gaaaagaauu ag-------- 3841 ---------- ---------- ---------- a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGG--- AUAUGUG--G 3961 C|GUCAAAAC u-ua-ug-gg cuCAUucu-- ------cgau acguga---- -AAAGGGUGU 4021 U--GGUGGAU AUGGACA-GU UGGACCGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GG~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS L.donovani 9262 bp RNA RNA 11-JAN-191 DEFINITION Leishmania donovani. ACCESSION No information KEYWORDS No information. SOURCE Leishmania donovani. ORGANISM Leishmania donovani. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L19408 LOCUS LEIRR24S 993 bp ss-rRNA RNA 11-JUN-1993 DEFINITION Leishmania donovani 24S ribosomal RNA alpha subunit. ACCESSION L19408 KEYWORDS 24S ribosomal RNA; 24S ribosomal RNA alpha-subunit. SOURCE Leishmania donovani (strain HU3) rRNA. ORGANISM Leishmania donovani Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 993) AUTHORS Fernandes,A.S., Nelson,K. and Beverley,S.M. TITLE Molecular evolutionary comparisons suggest multiple origins of vertebrate parasitism in trypanosomatid protozoa JOURNAL Unpublished (1993) FEATURES Location/Qualifiers rRNA <1..>993 /product="24S ribosomal RNA alpha subunit" /gene="24S rRNA" /evidence="EXPERIMENTAL" source 1..993 /organism="Leishmania donovani" /strain="HU3" /sequenced_mol="rRNA" BASE COUNT 273 a 213 c 293 g 214 t ORIGIN BASE COUNT 273 a 213 c 293 g 214 t 8269 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~|~(~~~)~ |~~~~~(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~A GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUuu gAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-AAUAGAAC C-UGAAGU-C 1501 GUGACAAAG< ac---aaugg aa--guaccu ccauuuca-a cggccagaa- -ccagcccua 1561 cu-------- -------gca u--uauccug ucggg(gguc aaaa-)ucc- ggcgggcaac 1621 g---aagugc aagaauuu-- ---ugggucu uggug----- aaaugagcgg aguauuugag 1681 cugugcacgg c-(gcaa--- ----)-gccg cacgcacggu uucuucucc- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------gug au-gcuc--- cauguuggcg 2521 -au------- ---------- ggaaaug--- gggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAgggAGUC AAACAGACGC GCAAGGGa-g gagaua---( u-ggu-ugcc 2641 ag)------- ---------- ---u-acuu- ---------- --cuCUCGUA CU(GGAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcaaaau -gcaucugu- ggugugcaca cgugaaaucc guuuga---- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -------uuu gcccaacacc ga-cc----- 3121 --ggc-ccuc cgug------ -gg--uugcg u]-------- ---------U GGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CCCA GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU AUGAUUUGGG AUUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACAU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUa--|-- -|gua----- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------g 3661 a-aguAUUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGC- -----AUUGG UGUU--(cuu 3721 a-g)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAAAcaa -accgugcc- 3781 uuagccaacu ---------- ----gcaagg c---cggaaa gaaaagaaau uag------- 3841 ---------- ---------- ---------- a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGGa-- AUAUGUG--G 3961 C|GUCAAAAC u-ua-ug-gg cuCAUucu-- ------cgau acguga---- -AAAGGGUGU 4021 U--GGUGGAU AUGGACA-GU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GG~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Phytomo.sp 9262 bp RNA RNA 11-JAN-191 DEFINITION Phytomonas sp.. ACCESSION No information KEYWORDS No information. SOURCE Phytomonas sp. ORGANISM Phytomonas sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L19410 LOCUS PMNRR24S 981 bp ss-rRNA RNA 12-JUN-1993 DEFINITION Phytomonas sp. 24S ribosomal RNA alpha subunit. ACCESSION L19410 KEYWORDS 24S ribosomal RNA; 24S ribosomal RNA alpha-subunit. SOURCE Phytomonas sp. rRNA. ORGANISM Phytomonas sp. Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 981) AUTHORS Fernandes,A.S., Nelson,K. and Beverley,S.M. TITLE Molecular evolutionary comparisons suggest multiple origins of vertebrate parasitism in trypanosomatid protozoa JOURNAL Unpublished (1993) FEATURES Location/Qualifiers rRNA <1..>981 /product="24S ribosomal RNA alpha subunit" /gene="24S rRNA" /evidence="EXPERIMENTAL" source 1..981 /organism="Phytomonas sp." /sequenced_mol="rRNA" BASE COUNT 278 a 205 c 282 g 216 t ORIGIN BASE COUNT 278 a 205 c 282 g 216 t 8281 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~|~(~~~)~ |~~~~~(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~A GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUuu gAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-CAUAGAAC C-UGAAAU-C 1501 GUGACAAUG< ac---aaugg aa--guaccu ccauuuca-a cggccaaaa- -ccaacuccc 1561 ua------ua gcaaac-gca u--uaucccg gcagg(guuc aaaa-)ucu- gcugggcacc 1621 uuu----ugc guugucca-- ---ggaguca uggug----- -aaugggcgg agagua-agg 1681 ucagcguuca ag(uucg--- ----)cuugg ---cguuggc cuucuuc--- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------gug au-------- cauguuggcg 2521 -au------- ---------- ggaaaug--- gggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCAAGGGa-g gagaaa---( uuuca-acug 2641 aa)------- ---------- ---a-ucuu- ---------- --cuCUCGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcgaacg -g-aucugu- ggugugcaca cguaaaa--- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- --------au gcccaacacc ga-cc----- 3121 --ggc-ccuc cgug------ -gg--uugag u]-------- ---------U GGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUggAAG UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CCCA GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU AUGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACAU CGAAGUUUCC --(CUCA)GG 3421 AUAGU-CGGU -GCUu--|-- -|gauacaa- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------g 3661 a-aguAUUGU -G|CUG--UA AA-GCAAAUG AUUAGAGGC- -----AUUGG UGUU--(cuu 3721 a-g)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAAAc-a aacug-ucc- 3781 uuagccaaau ---------- ----gcaagg a---uggaaa gaaaagaauu a--------- 3841 ---------- ---------- ---------- a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGG--- AUAUGUG--C 3961 G|GUCAAAAC u-ua-ug-gg cuCAUucu-- ------cgau acguga---- -AAAGGGUGU 4021 U--GGUGGAU AUGGACA-GU UGGGCGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GG~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS B.culicis 9262 bp RNA RNA 11-JAN-191 DEFINITION Blastocrithidia culicis. ACCESSION No information KEYWORDS No information. SOURCE Blastocrithidia culicis. ORGANISM Blastocrithidia culicis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L19404 LOCUS BLHRR24S 990 bp ss-rRNA RNA 10-JUN-1993 DEFINITION Blastocrithidia culicis 24S ribosomal alpha subunit RNA. ACCESSION L19404 KEYWORDS 24S ribosomal RNA; 24S ribosomal RNA alpha-subunit. SOURCE Blastocrithidia culicis rRNA. ORGANISM Blastocrithidia culicis Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 990) AUTHORS Fernandes,A.S., Nelson,K. and Beverley,S.M. TITLE Molecular evolutionary comparisons suggest multiple origins of vertebrate parasitism in trypanosomatid protozoa JOURNAL Unpublished (1993) FEATURES Location/Qualifiers rRNA <1..>990 /product="24S ribosomal RNA alpha subunit" /gene="24S rRNA" source 1..990 /organism="Blastocrithidia culicis" /sequenced_mol="rRNA" BASE COUNT 247 a 239 c 306 g 198 t ORIGIN BASE COUNT 247 a 239 c 306 g 198 t 8272 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~|~(~~~)~ |~~~~~(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~A GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGc)a- 1441 a-ggAAGUuu gAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-CAUAGAAC C-UGAAGU-C 1501 GUGACAAUG< ac---aaugg aaggcugccu ccauuuca-g cggccagaa- -ccagcccgc 1561 agc------- -------gca ugcuc-ccug gcggu(gcuc ucggc)aucg gccgggugaa 1621 caaucagugc gggucgcg-- ---cgggucu uggug----- aaaugggcgg agauuc--ag 1681 ggcgcg-gc- --(accagcg cg--)---gc g--cgcgcu- ---gcucc-- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------gug au-gcuc--- caugcuggcg 2521 -aug-gau-- --------c- ccaaaug--- gggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCAAGGGa-g gagcua---( u-ggu-ugcc 2641 ag)------- ---------- ---u-acuc- ---------- --uuCUCGcg CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -acgcgaa-g -gc-uc-gu- ggugugcaca uucuauguga ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -------uuu gcccaacacc ga-cc----- 3121 --ggc-ccuc cgug------ -gg--uugcg u]-------- ---------U GGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CCCA GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU AGGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACAU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUu--|-- -|gugacgac a--------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------c 3661 a-aguAUUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGC- -----AUUGG UGUU--(cuu 3721 a-c)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAAAcac -gccgcgcc- 3781 uuacccaucc a--------- ----ggaagg c---cgacga gaacagcauu a--------- 3841 ---------- ---------- ---------- a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAA-)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGG--- AUAUGUG--G 3961 C|GUCAAAAC u-ua-ug-gg cuCAUucu-- ------cgau acguga---- -AAAGGGUGU 4021 U--GGUGGAU A-GGACA-GU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GG~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS E.gracilis 9262 bp RNA RNA 11-JAN-191 DEFINITION Euglena gracilis. ACCESSION No information KEYWORDS No information. SOURCE Euglena gracilis. ORGANISM Euglena gracilis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X53361 BASE COUNT 876 a 1051 c 1244 g 881 t 5210 others ORIGIN 1 |--------- ---------- ---------- ------ACCU GUUGUGGUGG AUG|UCUUGG 61 |CCCAGGU|U C|-UGAGGAA GGA|CACA(- -gcagccu)U |GC-GAUACG UU-cggu|[- 121 gauacgcaga gucuugugau cugg------ ---------- ---------- ----aca]-- 181 ---------- ---------- --aaggaa|C AGCUUC-GAA Cgc-(aacug )-g-c|cagc 241 aagg-----g g(-------- ---------- ---------- -----uucc- c--)cc---- 301 -ccg-agcug ----ccugug -c-gc-cag- ------(--- --uguug--/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -----gugac )------cug gcg-caca-u gGA----AUG 481 AC|CCACCGA -A--CU|UA( AGCA)UA-UC ACUCAG-U-G G-AGGAAC-- --AGCAAGC( 541 AAC-C)UC-G AU|UGCUGCA GU---AAU(G GCGA)AUG-A A-----CGAG CAGG------ 601 ---------- ---------- ---------- ---------- --ACCCA|-- ---------c 661 ggcucuuccu gaaaaugggc uu//------ ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -----cucga ucggcuuucg 781 uugg--(aau ---)----cc ag-caaaccc ugu-gggcua uggagcaguu ggcug---ug 841 ucucggug-- ---------- ---------- ---------- ---------- cuucc-cagu 901 accaaGAA-- --g-agu-c( c-(uggaau- )g)gaccc-- ---------- --------AC 961 --|G(AAA)C |AGGG-(AGA CUGU)-CCCG UA|--uggcu gaaccgugug c-----uggg 1021 aucacuggga uguggcug-g cuguaucccc ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGAGUG GCU(----UG 1141 GGAC)UGCAG UUUGAA---- gaGUGA-C(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUGUAUCC-- ---------- ---------- ---------- )GUC-ACAAG GUG----GCA 1381 UA-------- ---------- CAGAC-CUGG GACCGAUAGU GCAC-AAGUA GA(GUGA)U- 1441 C-GAAGGAUG -CAA-AGAAC UCC(gc-ga- )AGAG-GGUU --AAAAGUCC C-UGAAGC-C 1501 GCAAC-AGG< au--cggugg ugugcagugc uguauc---- -//--ugacc aagcgucucu 1561 gggucagccc agggcuggcc accga--gcc ccugucuccg gacagggaug acuaucgugg 1621 cagccccgug guggcagcuc cgccug-cca ggaccuggag uuug---//- -ucgc-uggu 1681 gguugggcug gauucggggu gugcuuggcu gcaccggggg cugcaccguu cugacggugg 1741 uccccuugcu ggcugcaccg ucccccagcc ugaccccagu ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- -------gag aaauuggcag cagagcuugg 2461 caccccuccu ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ----ugcagu gcugcucucu >------GCC CGU(CUCGAA 2581 AC)ACGG|AC CAAGG-AGUC UAAGGAGCUU GCCAGUCg-g auggc----- ugauc-caaa 2641 ac-------- ---------- ---c-ucuu- ---------- cugaGGCGUG GU(GAAG)GC 2701 AA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---cuauccu uccagau-gg gg-------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----cuagu- ----)----- ---------- ------cucu --gcauggaa 3061 c--------- ---------- ---------- ---------- ------gacc gg-acccgaa 3121 gucc(--agu -)ggaca--g gguu-ucgag u]-------- ---------G CuuGCAAGG- 3181 -UCC-UUGGG ACCCGAAAGG U-GGUG-AAC UAUA-CCGU- UC|U-ACGGU GAAGCCAUGG 3241 (GAAA----- -----)CUGU GGU-GGAAGC CGG-UC---G CU-GUUCUGA (CGUGCAAA) 3301 UUGUG-UAGC CUGAGUGCGG CAUAGGG--G U--------- ---------- ---(GAAA-- 3361 --G)G---CC AAU-CGAGCC ACCUAGUAGC UGGUUCCCUU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGG -AUC--c|-- ---aaugaug caaagcuu-g ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- uaugug--ac 3661 u-gguUGCAU -C|CGG--UA AA-GCAACGC AUGAGAGGC- -caacccUGG GGAG--(ccc 3721 a-g)--CUCC U-CAA-|CCU AUCC-UCGAA CUGUG-AAUG |GGUGCGgac -aacccagg- 3781 caugcuucuu ugccacgaca ggaggcugug uaacagcagu -------ucu ---------c 3841 cccgucuucu gagcauguuc guugaacaau g|GA-UCCUA -CGU-GGACC -AUG-ACUG( 3901 G-UAAG)CAG UGC-UGGU-G AUGCGG(GG- UGCU)CCG-- AGAGCAG--- ACUUAca--g 3961 a|ucccgagu --G--CU-GG CUCAUacu-- ------caga ucccac---- -AAAGGAUGU 4021 U--GCUUACU ACGGAUA-GC AGGUCGGUGG CC(AUGA-AG GUU)GGAACC CG|C(UGA)G 4081 |GAAUGU(GU AACA)AC|-- -UCACCUGCC -GAAGUGCGC AGC|UC-CGA AAA--UGGAU 4141 G--GUG-CC- CAAGUCAGU| G|-------- ugucuCCCUU AcAGUCUGC| (- -----)-gca ucguu-gUGU AGAA------ 4441 -aGGG|-CA- UG-GA-CA-- --------a- -cag-cug-- a------ucg uGUU------ 4501 G-GGA(UUGA -)UCCCGGC- UUG|Aggcg| u--uGCCCA- GAGC-AGA-U CUUGGU|UG- 4561 UAGUAGCGAG -UACUCCAC- C(uggagagg a----gug(g caa)cacaac cccgcugugu 4621 gc)GGUUGAG |GACUGGAGU G-GAG|CAGG UUU|CCACAC CAaACA(-GC CGU)UG|AAU 4681 GUGGGUCAAC |-CGA-CCGU GAGC------ ---------- 4921 ----GC-AAG UGCGA-GC-A AGA(UUCUAC UG-)UCAUG| -GG----cua ga-ggu-ccc 4981 uu[cggguc- ---------- ---------- ---------- -g---gug(- -gcga--)ca 5041 cc-------- cc-caa-ggc ---------- ---------- -----ag-c] ccc-uccagg 5101 cauc-----g aac--cagug aa-u-cccc- -ug-ugga(G UUCUCGUU-) uccucc-|UG 5161 A-ugcagac- ------u-ca cgc|gggcua ucga-ucggc ----au(gac ag-)auggug 5221 gu-guaugcc cuuc------ ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----gcu--c aGC-----AA 5341 gGCGGUGUG( -gucuc--)C ACACCGAU-g gcaaguggca gucacu--gg uucC-AAUGA 5401 ACA-gccuga -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->---aggau ucucgugc-- ---------- ----cucagg --ac-ccu-- ug-uguCCGU 5581 A|CU-gCAUC ACC(GCAGCC )GG|UCU-CC UCGAC(UAGA C)GUCGCU-| UGUCC-||A- 5641 CG-G--ACGA AAUGCAG-CU A-AGGGAAGU CGGCAA-ACU -GGCCGUGCA CC(UUUG)GA 5701 AGAUACGGU| GGCUCCAGA- ---------- ------------ -------UGU GGAACU|G(- --UUG)CUGU 6601 GCAGGGGAAU C|-UGACUGU UU(AAUUG)A AACCCAGCUU UGUG|A--AG G|GAC(---c 6661 agcu)GGC-- ---------- --U-GGUUCC GUGAGGUG-- ACUUCUGCCC AGU|GCUCUG 6721 AU-UGUCAA- ---ugcgaa- ----(gaga) -----uucag ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAA-C( 6841 CAAUU)AUUG AC|GCGCAUG AAUGGAUCAA CGAGAUUCCU GCUGU-CCCU AGUCGCUGUC 6901 UG|GUGAACC A|aca-aCCA AG(GGAA-CG GG)CUUGGAU -G-UGU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGUUUGAC UCU-|AGUUU G---AUA-CU |GUGCAACAA CAUGUGGGGC 7021 GUAGCAUAGG UGGGAGGug- ---------- --<------- ---------- ----agugcc 7081 (a---//--- )ggugcg--- ---------- ---------- ------->(- -----)---- 7141 -------agC C-UGCAGUGA AA-UACCACU |ACCUUCAC- -CGUUG-UUU UACUCAu--- 7201 ---------- ---------| --a ACAUC-GAUC A-GUUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|GCCUUU (UACAACACA AC-)GAAG-G C|G|U|CCUG AAGCA-UUGC |UCAGG-CAG 7621 -A(ACA---- GAAA)UCUCC CAGGGA|GG( A|G--AAGG) CCAAAGG-UG C-UGCUGAUG 7681 -CUGCGAC(u cucaguac-- )GAGUCCGAA ACGU(-GCAA )UCGUGG|CC --UAA|CGA- 7741 UCCUUUGGuc aa-------- ---------- ---------- ---------- ---------- 7801 ---------- ---gugugcg a--a-uuc(- -uGGA-U--A Uc--)----- ---------- 7861 -----gaa|g CCAGAG-GUG UC|AGA--AA AAUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCUGCCAAGC G(UUCAA)AG CGACGUCGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AGCU|UC CCACCCG(CA -GC-)CGAGU GGAA-GAGU| UGGAU(UGUU C)ACCCACCA 8041 ACAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUGGUU 8101 UUACCCUCCU GCCAC-a<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- gaug>---GG CG-UG-ac-A AUGGCAUCAC AUGG(UAGUA 8281 C(GAGA)GGA AC-)CCUUGU G|GCACUCCC CUGGUUUCCA CCG|-UGAGU C(GAGC)GAC 8341 UGGUGUAGUG A-AGCUACC- AA-GUGA--C GGAUACUGAC U(GGACGCAU CUU-A)AGCC 8401 UGAAUCCGAG ACCAggccua cagC--AUGC C --|------( ---)------ 8701 --ccaacacc |ccgcc(-ca gacca)gg-c ugg------- a-u|cugcg- gcgaguguaa 8761 gu-guucaga gguuau---- --//uguccg auccguug(a gcuc)caa-g gccgggcuuc 8821 ugcagggagu ggcuucggc- ugc|-cccug c|uggggccg a--ccu-gac aga-gugggu 8881 g----|---- ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS B.caudat.1 9262 bp RNA RNA 11-JAN-191 DEFINITION Bodo caudatus. ACCESSION No information KEYWORDS No information. SOURCE Bodo caudatus. ORGANISM Bodo caudatus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L19405 LOCUS BODRR24S 962 bp ss-rRNA RNA 10-JUN-1993 DEFINITION Bodo caudatus 24S ribosomal RNA alpha subunit. ACCESSION L19405 KEYWORDS 24S ribosomal RNA; 24S ribosomal RNA alpha-subunit. SOURCE Bodo caudatus rRNA. ORGANISM Bodo caudatus Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Bodonidae; Bodoninae. REFERENCE 1 (bases 1 to 962) AUTHORS Fernandes,A.S., Nelson,K. and Beverley,S.M. TITLE Molecular evolutionary comparisons suggest multiple origins of vertebrate parasitism in trypanosomatid protozoa JOURNAL Unpublished (1993) FEATURES Location/Qualifiers rRNA <1..>962 /product="24S ribosomal RNA alpha subunit" /gene="24S rRNA" /evidence="EXPERIMENTAL" source 1..962 /organism="Bodo caudatus" /sequenced_mol="rRNA" BASE COUNT 267 a 210 c 274 g 211 t ORIGIN BASE COUNT 267 a 210 c 274 g 211 t 8300 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~|~(~~~)~ |~~~~~(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~A GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUAA)G- 1441 C-GAAAGUuu gAAA--GCAC UUU(gg-aa- )AGAG-AGUG A-CAUAGACC C-UGAAAU-C 1501 GUGACAAUG< ac---aauga aa--gcaccu ccauuuca-u uggccagaa- -ccagcccgc 1561 aa-------- -------gca u--ua-uc-g cggg-(-ucc c----)-cc- ugc-ggcaua 1621 c---aagugc au-gguuu-- ---cggguau uggug----- --augggacc aggacc---- 1681 cgcggcaccc cc(caauaaa a---)ggggg cgagccgcgg cgucuuccc- cc-------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------aag au--cucaaa ca-uuuggcg 2521 -aua------ ---------- ggaaaug--- gggugucuuc >------a-C CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCAAGGGa-g aagaua---( u-ugu-ugcc 2641 ag)------- ---------- ---u-acuu- ---------- --cuCUCGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcgaacu ------cau- ggugugcauu uuuu------ ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- --------aa acucaacacc ga-cc----- 3121 --ggc-ccga uuuuag---- -gg--uugag u]-------- ---------u cGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AGGGU GAAGCC--gg 3241 (GAAA----- -----)cuc- GGU-GGAGGC CUG-UA---G CG-GUGCUGA (CGUGCAAA) 3301 UCG-C-UCGC AUGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACAU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUu--|-- -|guuugaa- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------a 3661 a-aguAUUGU -G|CGG-gUA AA-GCAAAUG AUUAGAGGA- -----AUUGG UGUU--(cuu 3721 a-g)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAGAaaa -cccg-acc- 3781 uucgcuagcu ---------- ----gcaag- u---cggaua aaaaagaauu a--------- 3841 ---------- ---------- ---------- a|GG-CACCA -AGU-GGGCC -UUc-uUCG( 3901 G-UAAG)CGG --C-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGG--- AUAUGUG--G 3961 C|GUCAAAAC u-ua-ug-gg cuCAUucu-- ------cgau acguga---- -AAAGGGUGU 4021 U--AGUGGAU AGGGACA-GU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AAC-)AC|-- -UCACCAACC -GAAUCCACC GG~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS B.caudat.2 9262 bp RNA RNA 11-JAN-191 DEFINITION Bodo caudatus. ACCESSION No information KEYWORDS No information. SOURCE Bodo caudatus. ORGANISM Bodo caudatus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L19406 LOCUS BODRR24SA 980 bp ss-rRNA RNA 10-JUN-1993 DEFINITION Bodo caudatus 24S ribosomal RNA large subunit. ACCESSION L19406 KEYWORDS 24S ribosomal RNA; 24S ribosomal RNA alpha-subunit. SOURCE Bodo caudatus rRNA. ORGANISM Bodo caudatus Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Bodonidae; Bodoninae. REFERENCE 1 (bases 1 to 980) AUTHORS Fernandes,A.S., Nelson,K. and Beverley,S.M. TITLE Molecular evolutionary comparisons suggest multiple origins of vertebrate parasitism in trypanosomatid protozoa JOURNAL Unpublished (1993) FEATURES Location/Qualifiers rRNA <1..>980 /product="24S ribosomal RNA alpha subunit" /gene="24S rRNA" /evidence="EXPERIMENTAL" source 1..980 /organism="Bodo caudatus" /sequenced_mol="rRNA" BASE COUNT 271 a 217 c 279 g 213 t ORIGIN BASE COUNT 271 a 217 c 279 g 213 t 8282 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~|~(~~~)~ |~~~~~(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~A GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUuu gAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-CAUAGACC C-UGAAAU-C 1501 GUGACAAUG< ac---aauga aa--gcaccu ccauuuca-u uggccagaa- -ccagc--gc 1561 aa-------- -------gca u--ua-uccg cgggg(-ucc -----)ccc- ugccggcaua 1621 c---aagugc auugguuu-- ---cggguau uggua----- --augggacc aggacc---- 1681 cgcggcaccc cu(ucguaaa acaa)ggggg cgagccgcgg cgucuucccc cc-------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------aag au-cuucaaa ca-uuuggcg 2521 -aua------ ---------- ggaaaug--- gggugucuuc >------a-C CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCAAGGGa-g aagaua---( u-ugu-ugcc 2641 ag)------- ---------- ---u-acuu- ---------- --cuCUCGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcgaac- -gcauccau- ggugugcauu uuuu------ ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- --------aa acucaacacc ga-cc----- 3121 --ggc-ccga uuuuag---- -gg--uugag u]-------- ---------u cGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CCCG GGU-GGAGGC CUG-UA---G CG-GUGCUGA (CGUGCAAA) 3301 UCG-C-UCGC AUGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGU CGGUUCACAU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUu--|-- -|guauaua- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------g 3661 a-aguACUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGA- -----AUUGG UGUU--(cuu 3721 a-g)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AGUG |UGCAGAaaa -cccg-acc- 3781 uucgcuagcu ---------- ----gcaaga u---cggaua aaaaagaauu a--------- 3841 ---------- ---------- ---------- a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGGcG AUGCGG(AA- UGA-)CCG-- CUUAGGG--- AUAUGUG--G 3961 C|GCUAAAAC u-ua-ug-gg cuCAUucu-- ------cgau acguga---- -AAAGGGUGU 4021 U--AGUGGAU uaGGACA-GU UGGACGGUGG CC(AUGG-AA GUC)GGCACC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GG~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.borreli 9262 bp RNA RNA 11-JAN-191 DEFINITION Trypanoplasma borreli. ACCESSION No information KEYWORDS No information. SOURCE Trypanoplasma borreli. ORGANISM Trypanoplasma borreli. REFERENCE 1 (bases 1 to 4645) AUTHORS Maslov,D.A., Lukes,J., Jirku,M. and Simpson,L. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U39581 LOCUS TBU39581 984 bp rRNA INV 26-NOV-1995 DEFINITION Trypanoplasma borreli large subunit ribosomal RNA. ACCESSION U39581 KEYWORDS . SOURCE Trypanoplasma borreli. ORGANISM Trypanoplasma borreli Eukaryotae; mitochondrial eukaryotes; Euglenozoa; Kinetoplastida; Bodonidae; Trypanoplasma. REFERENCE 1 (bases 1 to 984) AUTHORS Maslov,D.A., Lukes,J., Jirku,M. and Simpson,L. TITLE Phylogeny of trypanosomes as inferred from the small and large subunit rRNAs: implications for the evolution of parasitism in the trypanosomatid protozoa JOURNAL Unpublished REFERENCE 2 (bases 1 to 984) AUTHORS Lukes,J. TITLE Direct Submission JOURNAL Submitted (27-OCT-1995) J. Lukes, Institute of Parasitology, Dept. of Molecular Parasitology, Branisovska 31, Ceske Budejovice, 37005, Czech Republic COMMENT NCBI gi: 1073253 FEATURES Location/Qualifiers source 1..984 /strain="Pg-JH (ATCC 50433)" /organism="Trypanoplasma borreli" /specific_host="Piscicola geometra" rRNA 1..984 /product="large subunit ribosomal RNA" BASE COUNT 274 a 212 c 280 g 218 t ORIGIN BASE COUNT 274 a 212 c 280 g 218 t 8278 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~|~(~~~)~ |~~~~~(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~UA GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUuu gAAA-AGCAC UUU(gg-ag- )AGAG-AGUG A-CGUAGAAC C-UGAAGU-C 1501 GUGAUAAUG< au---aauga aa--gcaccu ccauuuca-g uggccaaaa- -ccagcccua 1561 ca-------- -------gca u---uaucc- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- -aggaggg-u cuuuugacu- uucuucu--- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- --------gg 2101 caaccaagug caauacuggg guauugguga aaugggcggg uacaguggcg gugacacuca 2161 cgggcaaguc gccguucauu cccgugaugc acaaug---- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ----uuggcg 2521 -a-----u-- --------a- ggaaaug--- gggugucuuc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCAAGAGa-g aagaua---( u-ugu-ugcc 2641 ag)------- ---------- ---u-acuu- ---------- --cuCUCGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -cugc-cuac -gcagccau- ggugugcaca c----aacac gaa------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------u gcccaacacc gg-ccg---- 3121 ---gc-cccc cg-------- cgg--cugag c]-------- ---------U UGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCGGGG 3241 (GAAA----- -----)CCCA GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU AUGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACAU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUu--|-- -|-gu-caaa ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------g 3661 a-aguACUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGC- ----uuuugg uucu--(cuu 3721 a-g)--AGUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGUAGAaaa --acugguu- 3781 uucgcuaacu ---------- ---gucaaga u---cagaaa gaaaagaauu a--------- 3841 ---------- ---------- ---------- a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGG--- AUAUGUG--G 3961 C|GUCAAAAC u-ua-UG-GG CUCAUUCU-- ------cgau acguga---- -AAAGGGUGU 4021 U--GGUGGAU GAGGACA-AU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAAUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GGu|ac-c~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.congol.1 9262 bp RNA RNA 26-OCT-1995 DEFINITION Trypanosoma congolense.; . ACCESSION U22315 KEYWORDS . SOURCE Trypanosoma congolense. ORGANISM Trypanosoma congolense. REFERENCE 1 (bases 1 to 6991) AUTHORS Urakawa,T. and Majiwa,P.A. TITLE Physical and transcriptional organization of the ribosomal RNA genes of Trypanosoma (Nannomonas) cogolense JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 6991) AUTHORS Urakawa,T. TITLE Direct Submission JOURNAL Submitted (06-MAR-1995) Toyohiko Urakawa, Molecular Biology, International Livestock Research Institute (ILRI), Naivasha Road, Nairobi, Kenya STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U22315 NCBI gi: 1040856 BASE COUNT 552 a 550 c 674 g 552 t 6934 others ORIGIN 1 |--------- ---------- ---------- -----AACGU GUCGCGAUGG AUG|ACUUGG 61 |CUUCCUA|U U|uCGUUGAA GAA|CGCA(- -GCAA-AG)U |GC-GAUAAG ugguau-|[- 121 caauugcaga a-ucaucaca u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---ugccc|A AUCUUU-GAA CGC-(aaacg )-g-c|gcau 241 gggagaagcu c(-------- ---------- ---------- -----uucc- ---)gaguca 301 uccc-cgugc ---augccac -a--uucuca guguc-(--- ---ga----/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------aca )--gac-cug agu-gugg-c agg----ACC 481 AC|CCGCUAA -A--CU|UA( AGCA)UA-UU ACUCAG-C-G G-AGGAAA-- --AGAAAAC( 541 AAC-C)GU-G AU|UCUCUCA GU--cAGC(G GCGA)GCG-A A-----GAGG GAac------ 601 ------g--- ---------- ---------- ---------- -AACUCG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----uugcc gaaucggguc ---(ugaau- )---ggccuc gaguuguggc augacgugcc 781 gcc------u u--gggggcu gg-ugcgggc guggcugaau ucaaucgaaa agcaaa--cc 841 cguugcug-- ---------- ---------- ---------- ---------- aa-----ucu 901 a----caacc cuu-c-a-u( g-(-ugag-- )u)auuga-- ---------- --------GC 961 --|C(AAA)G |AAGG-(UGU CAGC)-CCau uu|-auucua u---gccacc c----accc- 1021 ---gcgccuc cucgggcg-g c---ccaaga ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGCACU GUU(----UG 1141 GGAA)UGCAG UGUCAA---G CCGGCA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAUUUGU-- ---------- ---------- ---------- )CUG-CCAAG GUU----AAA 1381 UA-------- --------CA GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUUU GAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-CAUAGAAC C-UGAAAU-C 1501 GUGACAACG< ac---aaugg aaguaccucc a--uuuc--- ----gacggc cagacccagc 1561 cgcgcgugug cauguguuua uucuuugccu ugggg(guuc aaaa-)ucc- cuuggcuuuu 1621 uccauugcgc gucgcggcgu ggcgugugug agugagcgga uuugcugggu gcgcuuugca 1681 ugccucccuu uuugguggua ugcauggugu gcucuuucc- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- --------gu gccucuc--- gacgcuggcg 2521 -aag------ ---------- gga-augg-- -ggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCaaggga-g ggguguuau( u-ucu-cuuu 2641 u-)------- -------gug agaa-ccuc- ---------- --uucucGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcgaa-u -gcauccgu- ggcgugcgcu uuuucuuuug uggau----- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ----uauaug gcccaacgcc gg-cc----- 3121 --ggc-cccg uuuugu---- -gg--cugcg c]-------- ---------G UGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CCCC GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU ACGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACGU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUc--|-- -|-gugucc- ggcaugcuuu uucug----- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- -------aaa 3601 aagagaggag cugcccgcgc cccacagcac acuguguuug uguguggcgu gauacga--a 3661 a-aguAUUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGC- -----aUUGG UGUU--(cuu 3721 g-u)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAAGaag cucggccuua 3781 gc-----cau uuuuuaua-- ------gcaa gg--ccggca gacaa----- ---------- 3841 ---------- ---------- ----gaauug a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGG--- AUAUGUG--G 3961 C|GUCG-AAA C-ucguG-GG CUCGUucu-- -------gau acguga---- -aaAGGGUGU 4021 U--GGUGGAU AGGGACA-GU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GGC|CC-CGA AAA--UGGAU 4141 G--ACG-CU- UAAGccccg| u|--gcguga uaGCCCAU-- --UAUUCCU| (- -----)gccc uuccg-aUGU AGAC------ 4441 --GUG|GC-G UG-GG-GG-- --------u- -gag-g-a-- c------GAA GCCG------ 4501 AUGGC(GUGA -)GCCUCGGa UGG|A-ccc| G--CCUCUA- GUGC-AGA-U CUUGGU|UG- 4561 GCGUAGCAAA -GAUCUAAC- G(gaaacau- ---------- ------auuc uaugaaaugc 4621 aa)CGUUGGA |UACUGGAGC G-GGG|AAGG AUU|UCGUGC CA-ACG(-GC ACU)CG|UAC 4681 ACGAGUUGUU |-CGGucaCU GAGC------ --------------- ---------- ---------- --------cc --ca-acu-- gc-agaCCGU 5581 A|CU--CAUC ACC(GCAUCA )GG|ucc-cc aagca(ucga a)u~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.congol.2 9262 bp RNA RNA 26-OCT-1995 DEFINITION Trypanosoma congolense.; . ACCESSION U22317 KEYWORDS . SOURCE Trypanosoma congolense. ORGANISM Trypanosoma congolense. REFERENCE 1 (bases 1 to 7635) AUTHORS Urakawa,T. and Majiwa,P.A. TITLE inferred from the sequences of ribosomal RNA genes Phylogenetic relationships among Salivarian trypanosomes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 7635) AUTHORS Urakawa,T. TITLE Direct Submission JOURNAL Submitted (06-MAR-1995) Toyohiko Urakawa, Molecular Biology, International Livestock Research Institute (ILRI), Naivasha Road, Nairobi, Kenya STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U22317 NCBI gi: 1040858 BASE COUNT 577 a 580 c 717 g 594 t 6794 others ORIGIN 1 |--------- ---------- ---------- -----AACGU GUCGCGAUGG AUG|ACUUGG 61 |CUUCCUA|U U|uCGUUGAA GAA|CGCA(- -GCAA-AG)U |GC-GAUAAG ugguau-|[- 121 caauugcaga a-ucaucaca u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---ugccc|A AUCUUU-GAA CGC-(aaacg )-g-c|gcau 241 gggagaagcu c(-------- ---------- ---------- -----uucc- ---)gaguca 301 uccc-cgugc ---augccac -auauucuca guguc-(--- ---ga----/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------aca )--gac-cug agu-gugg-c agg----ACC 481 AC|CCGCUAA -A--CU|UA( AGCA)UA-UU ACUCAG-C-G G-AGGAAA-- --AGAAAAC( 541 AAC-C)GU-G AU|UCUCUCA GU--cAGC(G GCGA)GCG-A A-----GAGG GAac------ 601 ------c--- ---------- ---------- ---------- -AACUCG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----uugcc gaaucggguc ---(ugaag- )---ggccuc gaguuguggc augacgcgcc 781 gccuuggggg --------cu gg-ugcgggc guggcugaau ucaaucgaaa agcaaa--cc 841 cguugcug-- ---------- ---------- ---------- ---------- aa-------u 901 c----caacc cuu-c-a-u( g-(-ugag-- )u)auuga-- ---------- --------GC 961 --|C(AAA)G |AAGG-(UGU CAGC)-CCau uu|-auucca u---gccacc g----auacc 1021 c--gcgccuc cucgggcg-g c---ccaaga ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGCACU GUU(----UG 1141 GGAA)UGCAG UGUCAA---G CCGGCA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAUUUGU-- ---------- ---------- ---------- )CUG-CCAAG GUU----AAA 1381 UA-------- --------CA GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUUU GAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-CAUAGAAC C-UGAAAU-C 1501 GUGACAACG< ac---aaugg aaguaccucc auuucgac-g gccagaccca gccgcgcgug 1561 ugcaugugug ---------- ---uuugccu cgggg(guuc aaaa-)ucc- cguggcuuug 1621 uuacuuauug cgcgucgcgg cguggcgugu gugagugagc ggaauagcag ggcucaugca 1681 uauaucuagc ccucucucua guggggaggg cgugugugug cu-------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- --cuuuccgu gcgucuc--- gacgcuggcg 2521 -aag------ ---------- gga-augg-- -ggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCaagggagg gguauugu-- augaguucuu 2641 ucucuuggg- ---------- -aga-accuc ---------- --uucccGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcgaaug caucuguggu gugcgccuuc uuuuuugaua u--------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------g gcccaaugcc gg-cc----- 3121 --ggc-cccg uuugcgu--- -gg--cugcg c]-------- ---------G UGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CCCC GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU ACGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACGU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUc--|-- -|gucucagg cauguuuuua aaugaaaaag augcccgcgu 3481 cccucacuuu cucucgcgca cucuuuuucc cuuucgccuu ccuucuccuu cuucccuucu 3541 uccucucccu cuuucucucu gucacaggag agcgggugug gggugugugg uggguguuau 3601 gagggcuggg agguugggaa auauguggug uuguguggag uagugugugg cgugauacga 3661 aaaguAUUGU --|CGG--UA AA-GCAAAUG AUUAGAGGC- -----aUUGG UGUU--(cuu 3721 g-u)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAAGaag cgcggucuua 3781 gc--cauaua uaua------ ------gcaa gg--ccggca gacaa----- ---------- 3841 ---------- ---------- ----gaauug a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGG--- AUAUGUG--G 3961 C|GUCG-AAA C-ucguG-GG CUCAUucu-- ------gacu ucguga---- -aaAGGGUGU 4021 U--GGUGGAU AGGGACA-GU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GGC|CC-CGA AAA--UGGAU 4141 G--ACG-CU- UAAGccccg| u|---cguga uaGCCCAU-- --UAUUCCU| (- -----)gccc uuccg-aUGU AGAC------ 4441 --GUG|GC-G UG-GG-GG-- --------u- -gag-g-a-- c------GAA GCCG------ 4501 AUGGC(GUGA -)GCU-CGGa UGG|A-ccc| G--CCUCUA- GUGC-AGA-U CUUGGU|UG- 4561 GCGUAGCAAA -GAUCUAAC- G(gaaacau- ---------- ------auuc uaugaaaugc 4621 aa)CGUUGGA |UACUGGAGC G-GGG|AAGG AUU|UCGUGC CA-ACG(-GC ACU)CG|UAC 4681 ACGAGUUGUU |-CGGucaCU GAGC------ --------------- ---------- ---------- --------cc --ca-acu-- gc-agaCCGU 5581 A|CU--CAUC ACC(GCAUCA )GG|ucc-cc aagca(ucga a)u~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.congol.3 9262 bp RNA RNA 26-OCT-1995 DEFINITION Trypanosoma congolense.; . ACCESSION U22318 KEYWORDS . SOURCE Trypanosoma congolense. ORGANISM Trypanosoma congolense. REFERENCE 1 (bases 1 to 5365) AUTHORS Urakawa,T. and Majiwa,P.A. TITLE inferred from the sequences of ribosomal RNA genes Phylogenetic relationships among Salivarian trypanosomes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 5365) AUTHORS Urakawa,T. TITLE Direct Submission JOURNAL Submitted (06-MAR-1995) Toyohiko Urakawa, Molecular Biology, International Livestock Research Institute (ILRI), Naivasha Road, Nairobi, Kenya STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U22318 NCBI gi: 1040859 BASE COUNT 538 a 560 c 697 g 487 t 6980 others ORIGIN 1 |--------- ---------- ---------- -----AACGU GUCGCGAUGG AUG|ACUUGG 61 |CUUCCUA|U U|uCGUUGAA GAA|CGCA(- -GCAA-AG)U |GC-GAUAAG ugguau-|[- 121 caauugcaga a-ucauucca u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---uaccu|A AUCUUU-GAA CGC-(aaacg )-g-c|gcau 241 gggagaagcc c(-------- ---------- ---------- -----cacc- ---)gggcca 301 uccc-cgugc ---augccac -a--aucuca guguc-(--- ---gaac--/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------aca )--gac-cug agu-gugg-c agg----ACC 481 AC|CCGCUAA -A--CU|UA( AGCA)UA-UU ACUCAG-C-G G-AGGAAA-- --AGAAAAC( 541 AAC-C)GU-G AU|UCUCUCA GU--cAGC(G GCGA)GCG-A A-----GAGG GAcg------ 601 ------g--- ---------- ---------- ---------- -AACUCG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----uugcc gaaucuuguc ccc(gcga-- )gggggccuu gaguuguggc augacgcgcc 781 gucug----- -----gggca gg-ugcggau guggcggaau ucaaucggaa agcaaa--cc 841 cguugcug-- ---------- ---------- ---------- ---------- aa-------c 901 a----caacc cuu-c-a-u( g-(-ugag-- )u)auuga-- ---------- --------GC 961 --|C(AAA)G |AAGG-(UGU CAGC)-CCau ua|-cac--- ----gccacu c----ccc-- 1021 ---gugccuc cucuggcg-g c---ccaaga ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGCACU GUU(----UG 1141 GGAA)UGCAG UGUCAA---G CCGGCA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAUUUGU-- ---------- ---------- ---------- )CUG-CCAAG GUU----AAA 1381 CA-------- --------UA GAGUA-GGAA GACCGAUAUG UAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUUU GAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-CAUAGAAC C-UGAAAU-C 1501 GUGACAACG< gc---aaugg aaguaccucc auuucgac-g gccagaccca gccgcgcgug 1561 ugcaugaugc gccggggguu ucgaaucccg gcgcuucucc uguugcgcga cgcggcaugg 1621 cgugcgugag ugggcggaac gaagggugug cgugcuucgc acaucgugcg cuucugcgcg 1681 uggugugcgg cauugcgcgc ccugu----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ------ccgu gcgucuc--- gacgcuggcg 2521 -aag------ ---------- gga-augg-- -ggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCaagggagg ggugu----( g-cuaaggug 2641 ag)------- ---------- ---a-accu- ---------- --cucucGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcggaug cauccguggu gugcgcaugc gccgcgaggc gug------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ----uugacu gcccaacgcc gg-cc----- 3121 --ggc-cccg auugagu--- -gg--cugcg c]-------- ---------G GGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CCCC GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU ACGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACGU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUu--|-- -|-guuccuc uccucugug- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- -ggaggggag 3661 a-aguAUUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGC- -----aUUGG UGUU--(cuu 3721 g-u)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAAAaag cgcggucuua 3781 gcuagugugg uuuca--cau auucaugcaa gg--ccggcg gacaa----- ---------- 3841 ---------- ---------- ----gaauug a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGG--- AUAUGUG--G 3961 C|GUCG-AAA C-ucguG-GG CUGCUucg-- -------gau acguga---- -aaAGGGUGU 4021 U--GGUGGAU AGGGACA-GU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GGC|CC-CGA AAA--UGGAU 4141 G--ACG-CU- UAAGccccg| u|--gcguga ugGCCCAU-- --UAUUCCU| (- -----)gccc uuccg-aUGU AGAC------ 4441 --GUG|GC-G UG-GG-GG-- --------u- -gag-g-a-- c------GAA GCCG------ 4501 AUGGC(GUGA -)GCCUCGGa UGG|A-ccc| G--CCUCUA- GUGC-AGA-U CUUGGU|UG- 4561 GCGUAGCAAA -GAUCUAAC- G(gaaagcu- ---------- --------ua aucgaaaugc 4621 aa)CGUUGGA |UACUGGAGC G-GGG|AAGG AUU|UCGUGC CA-ACG(-GC ACU)CG|CAC 4681 ACGAGUUGUU |-CGGucaCU GAGC------ --------------- ---------- ---------- --------cc --ca-acu-- gc-agaCCGU 5581 A|CU--CAUC ACC(GCAUCA )GG|ucc-cc aagca(ucga a)u~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.congol.4 9262 bp RNA RNA 26-OCT-1995 DEFINITION Trypanosoma congolense.; . ACCESSION U22319 KEYWORDS . SOURCE Trypanosoma congolense. ORGANISM Trypanosoma congolense. REFERENCE 1 (bases 1 to 6969) AUTHORS Urakawa,T. and Majiwa,P.A. TITLE Phylogenetic relationships among Salivarian trypanosomes inferred from the sequences of ribosomal RNA genes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 6969) AUTHORS Urakawa,T. TITLE Direct Submission JOURNAL Submitted (06-MAR-1995) Toyohiko Urakawa, Molecular Biology, International Livestock Research Institute (ILRI), Naivasha Road, Nairobi, Kenya STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U22319 NCBI gi: 1040860 BASE COUNT 553 a 549 c 676 g 555 t 6929 others ORIGIN 1 |--------- ---------- ---------- -----AACGU GUCGCGAUGG AUG|ACUUGG 61 |CUUCCUA|U U|uCGUUGAA GAA|CGCA(- -GCAA-AG)U |GC-GAUAAG ugguau-|[- 121 caauugcaga a-ucaucaca u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---ugccc|A AUCUUU-GAG CGC-(aaacg )-g-c|gcau 241 gggagaagcu c(-------- ---------- ---------- -----uucc- ---)gagcca 301 uccc-cgugc ---augccac -a--uucuca guguc-(--- ---gacc--/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------aca )--gac-cug agu-gugg-c agg----ACC 481 AC|CCGCUAA -A--CU|UA( AGCA)UA-UU ACUCAG-C-G G-AGGAAA-- --AGAAAAC( 541 AAC-C)GU-G AU|UCUCUCA GU--cAGC(G GCGA)GCG-A A-----GAGG GAac------ 601 ------g--- ---------- ---------- ---------- -AACUCG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----uugcc gaaucggguc ---(ugaaa- )---ggccuc gaguuguggc augacgugcc 781 gccuuggggg --------cu gg-ugcgggc guggcugaau ucaaucgaaa agcaaa--cc 841 cguugcug-- ---------- ---------- ---------- ---------- aa-----uuu 901 a----caacc cuu-c-a-u( g-(-ugag-- )u)auuga-- ---------- --------GC 961 --|C(AAA)G |AAGG-(UGU CAGC)-CCau uu|-auucug u---gccacc c----accc- 1021 ---gcgccuc cucgggcg-g c---ccaaga ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGCACU GUU(----UG 1141 GGAA)UGCAG UGUCAA---G CCGGCA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAUUUGU-- ---------- ---------- ---------- )CUG-CCAAG GUU----AAA 1381 UA-------- --------CA GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUUU GAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-CAUAGAAC C-UGAAAU-C 1501 GUGACAACG< gc---aaugg aaguaccucc auuucgac-g gccagaccca gccgcgcgug 1561 ugcaugugug uauuc----- ---ucugccu cgggg(guuc aaaa-)ucc- cuuggcuuuu 1621 uuccauugcg cgucgcggcg uggcgugugu gagugagcgg auuuguuggg cacgcuuugc 1681 augccuuuuu cuuugguaug cauggugugc ucu------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ----uuccgu gccucuc--- gacgcuggcg 2521 -aag------ ---------- gga-augg-- -ggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCaagggagg gguauugu-- --gugauauu 2641 ucucauuugu g--------- -aga-accuc ---------- --uucucGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcgaaug caucuguggc gugcgcuuuu uucuuuugcg gauucuau-- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------g gcccaacgcc gg-cc----- 3121 --ggc-cccg uuuuguugu- -gg--cugcg c]-------- ---------G UGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CCCC GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU ACGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACGU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUc--|-- -|-guguccg gcaugcuuuu ucu-gaaaaa gagagaagcu 3481 gcccgcgucc caccguguuu guguguggcg ugauacga-- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------a 3661 a-aguAUUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGC- -----aUUGG UGUU--(cuu 3721 g-u)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAAGaag cgcggccuua 3781 gccauuuuuu au--a----- ------gcaa gg--ccggca gacaa----- ---------- 3841 ---------- ---------- ----gaauug a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGG--- AUAUGUG--G 3961 C|GUCG-AAA C-ucguG-GG CUCAUucu-- -------gau acguga---- -aaAGGGUGU 4021 U--GGUGGAU AGGGACA-GU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GGC|CC-CGA AAA--UGGAU 4141 G--ACG-CU- UAAGccccg| u|--gcguga uaGCCCAU-- --UAUUCCU| (- -----)gccc uuccg-aUGU AGAC------ 4441 --GUG|GC-G UG-GG-GG-- --------u- -gag-g-a-- c------GAA GCCG------ 4501 AUGGC(GUGA -)GCCUCGGa UGG|A-ccc| G--CCUCUA- GUGC-AGA-U CUUGGU|UG- 4561 GCGUAGCAAA -GAUCUAAC- G(gaaacau- ---------- ------auuc uaugaaaugc 4621 aa)CGUUGGA |UACUGGAGC G-GGG|AAGG AUU|UCGUGC CA-ACG(-GC ACU)CG|UAC 4681 ACGAGUUGUU |-CGGucaCU GAGC------ --------------- ---------- ---------- --------cc --ca-acu-- gc-agaCCGU 5581 A|CU--CAUC ACC(GCAUCA )GG|ucc-cc aagca(ucga a)u~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.simiae 9262 bp RNA RNA 26-OCT-1995 DEFINITION Trypanosoma simiae.; . ACCESSION U22320 KEYWORDS . SOURCE Trypanosoma simiae. ORGANISM Trypanosoma simiae. REFERENCE 1 (bases 1 to 5204) AUTHORS Urakawa,T. and Majiwa,P.A. TITLE Phylogenetic relationships among Salivarian trypanosomes inferred from the sequences of ribosomal RNA genes JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 5204) AUTHORS Urakawa,T. TITLE Direct Submission JOURNAL Submitted (06-MAR-1995) Toyohiko Urakawa, Molecular Biology, International Livestock Research Institute (ILRI), Naivasha Road, Nairobi, Kenya STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U22320 NCBI gi: 1040861 BASE COUNT 534 a 554 c 697 g 488 t 6989 others ORIGIN 1 |--------- ---------- ---------- -----AACGU GUCGCGAUGG AUG|ACUUGG 61 |CUUCCUA|U U|uCGUUGAA GAA|CGCA(- -GCAA-AG)U |GC-GAUAAG ugguau-|[- 121 caauugcaga a-ucauuuca u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---uaccu|A AUCUUU-GAA CGC-(aaacg )-g-c|gcau 241 gggagaagcc c(-------- ---------- ---------- -----cucc- ---)gggcca 301 uccc-cgugc ---augccac -a--aucuca guguc-(--- ---gaac--/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------aca )--gac-cug agu-gugg-c agg----ACC 481 AC|CCGCUAA -A--CU|UA( AGCA)UA-UU ACUCAG-C-G G-AGGAAA-- --AGAAAAC( 541 AAC-C)GU-G AU|UCUCUCA GU--cAGC(G GCGA)GCG-A A-----GAGG GAcg------ 601 ------g--- ---------- ---------- ---------- -AACUCG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----uugcc gaaucugguc ccc(augu-- )gggggccuu gaguuguggc augacgcgcc 781 gucug----- -----gggca gg-ugcggau gugguggaau ucaaucggaa agcaaa--cc 841 cguugcug-- ---------- ---------- ---------- ---------- aa-------c 901 a----caacc cuu-c-a-u( g-(-ugag-- )u)auuga-- ---------- --------GC 961 --|C(AAA)G |AAGG-(UGU CAGC)-CCau ug|-cac--- ----gccacu c----ccc-- 1021 ---gcgccuc cucuggcg-g c---ccaaga ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGCACU GUU(----UG 1141 GGAA)UGCAG UGUCAA---G CCGGCA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAUUUGU-- ---------- ---------- ---------- )CUG-CCAAG GUU----AAA 1381 CA-------- --------CA GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUUU GAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-CAUAGAAC C-UGAAAU-C 1501 GUGACAACG< gc---aaugg aaguaccucc auuucgac-g gccagaccca gccgcgcgug 1561 ugcauguggc gccggggguu ucgaaucccg gcgcuuuu-c uguugcgcga cgcggcgugg 1621 cgugcgugag ugggcggaau gaauggcgug cgugcucucg cauugug-ug cuugugugcg 1681 cg--gugcgg cgcgcgu-gc ccugu----- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ------ccgu gcgucuc--- gacgcuggcg 2521 -aag------ ---------- gga-augg-- -ggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCaagggagg gguguuu--( a-cgugugua 2641 ug)------- ---------- -aga-accu- ---------- --cucucGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcgaagg cauccguggu gugcgcaugc gccgcaaggc gug------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ----uugagu gcucaacgcc gg-cc----- 3121 --ggc-cccg aucgagu--- -gg--cugcg c]-------- ---------G CGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CCCC GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU ACGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACGU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUu--|-- -|-guuccuc ucucgcggg- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ----gaggag 3661 a-aguAUUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGC- -----aUUGG UGUU--(cuu 3721 g-u)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAAGaag cucggucuua 3781 gcuagugugg uuucac--au guucaugcaa gg--ccggcg ggcaa----- ---------- 3841 ---------- ---------- ----gaauua a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGG--- AUAUGUG--G 3961 C|GUCG-AAA C-ucguG-GG CUCAUucg-- -------gau acguga---- -aaAGGGUGU 4021 U--GGUGGAU AGGGACA-GU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GGC|CC-CGA AAA--UGGAU 4141 G--ACG-CU- UAAGccccg| u|--gcguga uaGCCCAU-- --UAUUCCU| (- -----)gccc uuccg-aUGU AGAC------ 4441 --GUG|GC-G UG-GG-GG-- --------u- -gag-g-a-- c------GAA GCCG------ 4501 AUGGC(GUGA -)GCCUCGGa UGG|A-ccc| G--CCUCUA- GUGC-AGA-U CUUGGU|UG- 4561 GCGUAGCAAA -GAUCUAAC- G(gaaagcu- ---------- --------aa aucgaaauuc 4621 aa)CGUUGGA |UACUGGAGC G-GGG|AAGG AUU|UCGUGC CA-ACG(-GC ACU)CG|CAC 4681 ACGAGUUGUU |-CGGucaCU GAGC------ --------------- ---------- ---------- --------cc --ca-acu-- gc-agaCCGU 5581 A|CU--CAUC ACC(GCAUCA )GG|ucc-cc aagca(ucga a)u~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.cruzi.1 9262 bp RNA RNA 11-JAN-191 DEFINITION Trypanosoma cruzi str. Y (clones EA3). ACCESSION No information KEYWORDS No information. SOURCE Trypanosoma cruzi str. Y (clones EA3). ORGANISM Trypanosoma cruzi. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: M28885 LOCUS TRBRRNAZ 2378 bp ds-DNA INV 15-SEP-1990 DEFINITION T.cruzi 24S-alpha and S1 rRNA genes, complete cds., and 24S-beta rRNA gene, 5' end. ACCESSION M28885 KEYWORDS 24S ribosomal RNA alpha-subunit; 24S ribosomal RNA beta-subunit; S1 ribosomal RNA. SOURCE T.cruzi (strain Y) epimastigote DNA, clones EA3. ORGANISM Trypanosoma cruzi Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 2378) AUTHORS Vieira de Arruda,M., Reinach,F.C., Colli,W. and Zingales,B. TITLE Sequence of the 24S-alpha ribosomal RNA gene and characterization ofa corresponding pseudogene from Trypanosoma cruzi JOURNAL Mol. Biochem. Parasitol. 40, 35-42 (1990) STANDARD full staff_review COMMENT Draft entry and printed sequence for [1] kindly submitted by B.Zingales, 06-OCT-1989. FEATURES Location/Qualifiers rRNA 87..2064 /note="24S-alpha ribosomal RNA" rRNA 2111..2325 /note="S1 ribosomal RNA" rRNA 2368..>2378 /note="24S-beta ribosomal RNA" BASE COUNT 674 a 484 c 619 g 601 t ORIGIN BASE COUNT 602 a 462 c 602 g 538 t 7058 others ORIGIN 1 |nnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnn|nnnnnn 61 |nnnnnnn|n n|nnnnnnnn nnn|nnnn(n nnn-----)- |--------- ---------- 121 ---------- ---------- ---------- ---------- ---------- -------]-- 181 ---------- ---------- --------|- ---------- ----(----- )----|---- 241 ---------- -(-------- ---------- ---------- ---------- ---)------ 301 ---------- ---------- ---------- ------(--- ---------/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------aca )--gac-cug agu-gugg-c aGG----ACU 481 AC|CCGCCGA -A--CU|UA( AGCA)UA-UU ACUAAG-C-G G-AGGAAA-- --AGAAAAC( 541 AAC-C)GU-G AU|UCUCUCA GUacauGC(G GCGA)GCG-A A-----GAGG -AUc------ 601 ------c--- ---------- ---------- ---------- -AACUCG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----uugcc gaaucgguuc ---(uuauag )---gaacuu gaguuguggc aagaaacgcg 781 ucgc-----u uc-gagggcu gg-ugcagga auggugaaau ucaauugcaa agcaaa--cc 841 cguugcug-- ---------- ---------- ---------- ---------- aa-------u 901 a----caacc cuu-c-a-u( g-(-ugag-- )u)auuga-- ---------- --------GC 961 --|C(AAA)G |AAGG-(UGU UAGC)-CCAU UG|------- ---agccaug ------aacc 1021 uaagcgccuc cuuaagcg-a a---ccaaga ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGCACU GCU(----UG 1141 GGAG)UGCAG UGUCAA---G CUGGCA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAUGUGU-- ---------- ---------- ---------- )CUG-CCAAA GUU----AAA 1381 UA-------- --------CA GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUUU GAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-CAUAGAAC C-UGAAGU-C 1501 GUGACAAUG< ac---aaugg aaguaccucc a--uuuca-a cggccaaaa- -ccagccucu 1561 uuuuucuuac ugauauu-au au-uauauua guagc(agag cuua-)ucc- gcugggguuu 1621 aaaauccagu ggguaacccu g--------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------a aa-agcaaga acgaggucau gguguacaaa auguguguau 2341 aag-cggaga guaagaagg- agcgugguuc auuguuuuuu cucucucuuu --ucccccuu 2401 c-gcggggag aggg-ggggg --agaggcaa agcgcuccuu -cuucuucgu guu--cucau 2461 auuu-ggcg- aa-------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ggaaaug--- gggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCAAGGGa-g aagaua---( u-cgu-ugcc 2641 ag)------- ---------- ---u-acuu- ---------- --cuCUCGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcaaauu -gcaucugu- ggugugcaca cuuaau-gaa uaauauauaa ccauauauua 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---uuuguu- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -------guu gcccaacacc ga-cc----- 3121 --ggc-cccc cgug------ -gg--uugag u]-------- ---------U GGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUggAAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CUCG GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGC AUGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACAU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUu--|-- -|guuugaa- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------a 3661 a-aguAUUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGC- -----AUUGG UGUU--(cuu 3721 a-g)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAAAcaa -accgcgcc- 3781 uuagccaaaa uuuug----- --uagcaagg u---cggaca gacaa----- ---------- 3841 ---------- ---------- ----gaauua a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGG--- AUAUGUG--G 3961 C|GUCA-AAA C-uuaUG-GG CUCAUucu-- ------cgau acguga---- -AAAGGGUGU 4021 U--GGUGGAU AGGGACA-GU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GGC|CC-CGA AAA--UGGAU 4141 G--ACG-CU- CAAGCCCAA| U|--uaguga uuGCCCAU-- --UAUUCCU| (- -----)gccc uuccg-aUGU AGAU------ 4441 --GUG|GC-G UG-GA-GG-- --------U- -A-A-GGa-- c------GAA GCUG------ 4501 AuGGC(GUGA -)GCCUCAGa UGG|A-CCA| G--CCUCUA- GUGC-AGA-U CUUGGU|UG- 4561 GCGUAGCAAA -GAUCUAAC- G(gaaaacu- ---------- ---------a uuuaacaugc 4621 aa)CGUUGGA |U-CUGGAGC G-GGG|AAGG AUU|UCGUGC CA-ACG(-GC ACU)CG|UAC 4681 ACGAGUUGUU |-CGGauacu gagc------ -(----)-------- ---------- ---------- --------cc --ca-acu-- gc-ag~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.cruzi.2 9262 bp RNA RNA 04-OCT-1994 DEFINITION Trypanosoma cruzi. str. La Cruz, Jalisco; 28S ribosomal RNA; 5.8S ribosomal RNA; internal transcribed spacer 1; internal transcribed spacer 2; internal transcribed spacer 3; internal transcribed spacer 4; internal transcribed spacer 5. ACCESSION L22334 KEYWORDS 28S ribosomal RNA; 5.8S ribosomal RNA; internal transcribed spacer 1; internal transcribed spacer 2; internal transcribed spacer 3; internal transcribed spacer 4; internal transcribed spacer 5. SOURCE Trypanosoma cruzi. str. La Cruz, Jalisco. ORGANISM Trypanosoma cruzi. REFERENCE 1 (bases 1 to 6362) AUTHORS Gomez,E., Martinez-Calvillo,S. and Hernandez,R. TITLE A model for the secondary structure of the large subunit ribosomal rna from trypanosoma cruzi JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L22334 NCBI gi: 556442 BASE COUNT 1188 a 997 c 1227 g 1167 t 4683 others ORIGIN 1 |--------- ---------- ---------- -----AACGU GUCGCGAUGG AUG|ACUUGG 61 |CUUCCUA|U U|uCGUUGAA GAA|CGCA(- -GCAA-AG)U |GC-GAUAAG UGguau-|[- 121 caauugcaga a-ucauucaa u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---uaccg|A AUCUUU-GAA CGC-(aaacg )-g-c|gcau 241 gggagaagcu c(-------- ---------- ---------- -----cuca- ---)gaguca 301 uccc-cgugc ---augccau -a-uuucuca guguc-(--- ---gaac--/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------aca )--gac-cug agu-gugg-c aGG----ACU 481 AC|CCGCCGA -A--CU|UA( AGCA)UA-UU ACUAAG-C-G G-AGGAAA-- --AGAAAAC( 541 AAC-C)GU-G AU|UCUCUCA GU--cAGC(G GCGA)GCG-A A-----GAGG GAUc------ 601 ------c--- ---------- ---------- ---------- -AACUCG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----uugcc gaaucgguuc ---(uuauag )---gaacuu gaguuguggc aagaaagcgu 781 cgc------u uc-gagggcu gg-ugcagga auggugaaau ucaauugcaa agcaaa--cc 841 cguugcug-- ---------- ---------- ---------- ---------- aa-------u 901 a----caacc cuu-c-a-u( g-(-ugag-- )u)auuga-- ---------- --------GC 961 --|C(AAA)G |AAGG-(UGU UAGC)-CCAU UG|------- ---agccaug ------aacc 1021 uaagcgccuc cuuaagcg-a a---ccaaga ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGCACU GCU(----UG 1141 GGAG)UGCAG UGUCAA---G CUGGCA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAUGUGU-- ---------- ---------- ---------- )CUG-CCAAA GUU----AAA 1381 UA-------- --------CA GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUUU GAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-CAUAGAAC C-UGAAGU-C 1501 GUGACAAUG< ac---aaugg aaguaccucc a--uuuc--- ------aacg gccaaaacca 1561 gccucuuuuu uuuuauagcc agcuuauccg cuggg(guuc aaaa-)ucc- agugggggua 1621 acccuuuaaa aaagcaagaa c--gagguca ugguguaca- aaaugugugg uguaag-cgg 1681 agaguaagag ggagcguggu uucauuguuc ucucucuuuu ccuuuuuccu ucgcggggag 1741 agagggggag gaggagggac aaagcgcucc uucuucuuc- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------gug uggucuc--- auauuuggcg 2521 -aag------ ---------- gaa-au---- -ggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCAAGGGa-g aagaua---( u-cgu-ugcc 2641 ag)------- ---------- ---u-acuu- ---------- --cuCUCGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcgaaau -gcaucugu- ggugugcaca cuuuucauuu uuugu----- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -------guu gcccaacacc ga-cc----- 3121 --ggc-cccc cgug------ -gg--uugag u]-------- ---------U GGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CUCG GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGC AUGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACAU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUu--|-- -|-guuugaa ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------a 3661 a-aguAUUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGC- -----AUUGG UGUU--(cuu 3721 a-g)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAAAcaa -accgcgcc- 3781 uuagccaaaa uuuuuu---- --uagcaagg c---cggaca gacaa----- ---------- 3841 ---------- ---------- ----gaauua a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGG---- AUAUGUG--G 3961 C|GUCA-AAA C-uuaUG-GG CUCAUucu-- ------cgau acguga---- -AAAGGGUGU 4021 U--GGUGGAU AGGGACA-GU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GGC|CC-CGA AAA--UGGAU 4141 G--ACG-CU- CAAGCCCAA| U|-ua-guga uuGCCCAU-- --UAUUCCU| (- -----)gccc uuccg-aUGU AGAU------ 4441 --GUG|GC-G UG-GA-GG-- --------U- -A-A-GGa-- c------GAA GCUG------ 4501 AuGGC(GUGA -)GCCUCAGa UGG|A-CCA| G--CCUCUA- GUGC-AGA-U CUUGGU|UG- 4561 GCGUAGCAAA -GAUCUAAC- G(gaaaacu- ---------- ---------a uuuaacaugc 4621 aa)CGUUGGA |UACUGGAGC G-GGG|AAGG AUU|UCGUGC CA-ACG(-GC ACU)CG|UAC 4681 ACGAGUUGUU |-CGGauacu gagc------ --------------- ---------- ---------- --------cc --ca-acu-- gc-agaCCGU 5581 A|CU--CAUC ACC(GCAUCA )GG|UCC-CC AAGCA(UACA A)UGCUCU-| GGUAC-||A- 5641 UA-G--AGAA AG-GUACaCU C-AGGGAAGU CGGCAA-AAU -AGAUGCGUA AG(UUCG)CA 5701 AGAAGCAUU| GGCUCUGAG- ---------- -(-----)---- -------CUC AGAACU|G(- ----c)uuac 6601 ggcGGGGAAU C|-CAACUGU AU(AAUUA)A AACAUAGGUU UGUG|A--UG C|AUC(---c 6661 aagu)GGU-- ---------- --G-UAUGUC GCAAACUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---cgugac- ----(gaga) -----uucac ----CGACGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCUU-C( 6841 CAAUU)AGAG AC|GCGCAUG AAUGGAUUAA UGAGAUUCCC UCUGU-CCCG AGUUACUAUC 6901 UA|GCGAAAC G|ACA-GUCA AG(GGAA-CG GA)CUUGAAG -G-GCU-AAG CGGGGAAAGA 6961 AGACCCUGUU G|AGUUUGAC UCC-|AGUCU G---GCU-CU |GUGCGGCGA CAUCUGAGGU 7021 GUAGUAUAGG UGGAAGC--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- -------~(- -GCAA)---- 7141 ---------G C-ACAAAUGA AA-UACCACC |ACUUGGAA- -cGUUG-CUU CACUUAu--- 7201 ------(--- --)------| --a GACAucUGCC A-GAUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-U|AUCUGU (UACACGACA AC-)GCAG-G U|G|U|CCU- AAGGC-GAGC |UCAGU-GGG 7621 -A(ACA---- GAAA)UCUCA CGUAGA|AC( A|C--AAGC) GUAAAAG-CU U-GCUUGAUU 7681 AACGAUUU(c c--aguac-- )GAAUCGAGA CUGC(-GAAA )GCAAG-|GC --CAG|CGA- 7741 UCCUUUGC-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- gaaauauagg aaau-aug(- -aACA-A--A U---)----- ---------- 7861 -----cau|a ccagag-gug uC|AGA--AU AAUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCGGCCAAGC G(UUCAU)AG CGACGUCGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AACC|UA G-CGCCG(CA -GA-)AGACG CUAA-GGGU| UGGAU(UGUU C)ACCCACUG 8041 ACAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUGGUU 8101 UUACCCUACU UAGCU-ggcagg ua-uc-gu-g agggaAGUAU GGGG(UAGUA 8281 C(GAGA)GGA AC-)UCCCAU G|CCGUGCCU CUGGUUUCUG GAG|-UUUGU C(GAAC)GGC 8341 AAGUGCUCCG A-CGCUAUC- GC-ACGG--U GGUUCUCGGC U(GAACGCCU C-U-A)AGCC 8401 AGAAGCCA-G uccc-aa-ga ccag--augc c --|------( ---)------ 8701 ---------- |--------- ---------- ---------- ---|------ ---------- 8761 ---------- ---------- -------aua ucgaaucgcc auccaaauca ucugguagcu 8821 cugccugccc ucgaaggcg- cca|-aguau c|uccaugau c--aca-aga ca---uuuau 8881 uuuug|aaac aagagaaaaa auaaauaggc cagugauaaa uauauauaua uacauaaaca 8941 ugcauauacu auguguuguu guguguuuug uuguuguguu gucucugcgc cauauauauu 9001 uauaagcaca ccucucucgc aucgugugua uguuguuguu guuguuguug uguugugugc 9061 guugugugug uguguguugu uguguuguug uugugugugu guguguguuu guauggacac 9121 acccacauuc cacacuauau uacacaccau cauacaucac auauaucaca uaauauaaau 9181 aauaacaaua auauaugugu gcacgugagc uccacggaag ggcaucccaa acgcggggag 9241 aagcggcguu ccugcag||| || // LOCUS T.cruzi.3 9262 bp RNA RNA 11-JAN-191 DEFINITION Trypanosoma cruzi. ACCESSION No information KEYWORDS No information. SOURCE Trypanosoma cruzi. ORGANISM Trypanosoma cruzi. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L19411 LOCUS TRBRR24S 1109 bp ss-rRNA RNA 12-JUN-1993 DEFINITION Trypanosoma cruzi 24S ribosomal RNA alpha subunit. ACCESSION L19411 KEYWORDS 24S ribosomal RNA; 24S ribosomal RNA alpha-subunit. SOURCE Trypanosoma cruzi (strain Peru) rRNA. ORGANISM Trypanosoma cruzi Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 1109) AUTHORS Fernandes,A.S., Nelson,K. and Beverley,S.M. TITLE Molecular evolutionary comparisons suggest multiple origins of vertebrate parasitism in trypanosomatid protozoa JOURNAL Unpublished (1993) FEATURES Location/Qualifiers rRNA <1..>1109 /product="24S ribosomal RNA alpha subunit" /gene="24S rRNA" /evidence="EXPERIMENTAL" source 1..1109 /organism="Trypanosoma cruzi" /strain="Peru" /sequenced_mol="rRNA" BASE COUNT 310 a 225 c 304 g 270 t ORIGIN BASE COUNT 310 a 225 c 304 g 270 t 8153 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~|~(~~~)~ |~~~~~(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~A GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUUU GAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-CAUAGAAC C-UGAAGU-C 1501 GUGACAAUG< ac---aaugg aaguaccucc a--uuuca-a cggccaaaa- -ccagccucu 1561 uuuuucuuac ugauauu-au au-uauauua guagc(--ag cuua-)ucc- gcugggguuu 1621 aaaauccagu ggguaacccu g--------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- -------aaa ag-caagaac gaggucaugg uguacaaaau guguguauac 2341 auaagcggag aguaagaag- gacgugguuc auuguuuuuu cucucuuuuc --ucccccuu 2401 c-gcggggag aggg-ggggg --agaggcaa agcgcuccuu -cuucuucgu guu--cucau 2461 auuu-ggcg- aa-------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ggaaaug--- gggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCAAGGGa-g aagaua---( u-cgu-ugcc 2641 ag)------- ---------- ---u-acuu- ---------- --cuCUCGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcaaauu -gcaucugu- ggugugcaca cuuaau-gaa uaauauauaa ccauauauua 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---uuuguu- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -------guu gcccaacacc ga-cc----- 3121 --ggc-cccc cgug------ -gg--uugag u]-------- ---------U GGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CUCG GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGC AUGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACAU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUu--|-- -|guuugaa- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------a 3661 a-aguAUUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGC- -----AUUGG UGUU--(cuu 3721 a-g)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAAAcaa -accgcgcc- 3781 uuagccaaaa uuuug----- --uagcaagg u---cggaca gacaa----- ---------- 3841 ---------- ---------- ----gaauua a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGG--- AUAUGUG--G 3961 C|GUCA-AAA C-uuaUG-GG CUCAUucu-- ------cgau acguga---- -AAAGGGUGU 4021 U--GGUGGAU AGGGACA-GU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GG~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.brucei 9262 bp RNA RNA 11-JAN-191 DEFINITION Trypanosoma brucei. ACCESSION No information KEYWORDS No information. SOURCE Trypanosoma brucei. ORGANISM Trypanosoma brucei. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X04986,X05682,X14553 LOCUS TRBRN28S3 1502 bp ds-DNA INV 15-MAR-1988 DEFINITION T. brucei DNA for 28S beta rRNA 3'end and small rRNAs 180, 70, 140. ACCESSION X04986 KEYWORDS 28S ribosomal RNA; 28S ribosomal RNA beta; ribosomal RNA; small ribosomal RNA. SOURCE Trypanosoma brucei. ORGANISM Trypanosoma brucei Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 1502) AUTHORS White,T.C., Rudenko,G. and Borst,P. TITLE Three small RNAs within the 10kb trypanosome rRNA transcription unit are analogous to domain VII of other eukaryotic 28S rRNAs JOURNAL Nucleic Acids Res. 14, 9471-9489 (1986) STANDARD simple automatic REFERENCE 2 (bases 1399 to 1399) AUTHORS White,T. JOURNAL Unpublished (1987) T. White STANDARD simple automatic COMMENT [1] no enum.. Data kindly reviewed (12-MAY-1987) by White T. EMBL features not translated to GenBank features: key from to description REVISION 1399 1399 g was c in [1] FEATURES Location/Qualifiers rRNA <1..211 /note="pot. 28S beta ribosomal RNA put. 3' end between pos. 211-220" rRNA 296..478 /note="180 small ribosomal RNA" rRNA 801..877 /note="70 small ribosomal RNA" rRNA 1206..1341 /note="140 small ribosomal RNA" BASE COUNT 374 a 283 c 363 g 482 t ORIGIN LOCUS TRBRRNA 4511 bp ds-DNA INV 17-JUN-1991 DEFINITION Trypanosoma brucei gene for ribosomal RNA large subunit ACCESSION X14553 KEYWORDS ribosomal DNA; ribosomal RNA; ribosomal RNA large subunit. SOURCE Trypanosoma brucei DNA. ORGANISM Trypanosoma brucei Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 4511; 1 to 4511) AUTHORS Campbell,D. JOURNAL Unpublished (1989) COMMENT See for overlapping sequence. From EMBL 27 entry TBRRNA; dated 06-FEB-1990. FEATURES Location/Qualifiers rRNA 1..4511 /note="ribosomal RNA large subunit" BASE COUNT 1100 a 998 c 1190 g 1223 t ORIGIN LOCUS TRBRRN58 1359 bp ds-DNA INV 30-SEP-1988 DEFINITION Trypanosoma brucei 5.8S ribosomal DNA and flanking regions. ACCESSION X05682 KEYWORDS 5.8S ribosomal RNA; internal transcribed spacer; ribosomal DNA; ribosomal RNA. SOURCE Trypanosoma brucei. ORGANISM Trypanosoma brucei Eukaryota; Animalia; Protozoa; Sarcomastigophora; Mastigophora; Kinetoplastida; Trypanosomatina; Trypanosomatidae. REFERENCE 1 (bases 1 to 1359) AUTHORS Campbell,D.A., Kubo,K., Clark,C.G. and Boothroyd,J.C. TITLE Precise identification of cleavage sites involved in the unusual processing of trypanosome ribosomal RNA JOURNAL J. Mol. Biol. 196, 113-124 (1987) STANDARD simple automatic COMMENT *source: strain=427; see x05683 for further downstream LS1 sequence Data kindly reviewed (15-Feb-1988) by Boothroyd J. C. EMBL features not translated to GenBank features: key from to description SITE 57 398 ITSI SITE 569 1158 ITSII FEATURES Location/Qualifiers rRNA <1..56 /note="small subunit RNA" rRNA 399..568 /note="5.8S RNA" rRNA 1159..1359 /note="large subunit RNA (LS1)" BASE COUNT 377 a 234 c 308 g 440 t ORIGIN BASE COUNT 946 a 995 c 1165 g 1082 t 5074 others ORIGIN 1 |--------- ---------- ---------- -----AACGU GUCGCGAUGG AUG|ACUUGG 61 |CUUCCUA|U U|uCGUUGAA GAA|CGCA(- -GCAA-AG)U |GC-GAUAAG UGguau-|[- 121 caauugcaga a-ucauuuca u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---ugccc|A AUCUUU-GAA CGC-(aaacg )-g-c|gcau 241 gggagaagcu c(-------- ---------- ---------- -----ucuc- ---)gagcca 301 uccc-cgugc ---augccac -a-uuucuca guguc-(--- ---ga----/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------uca )--gac-cug agu-gugg-c aGG----ACC 481 AC|CCGCUAA -A--CU|UA( AGCA)UA-UU ACUCAG-C-G G-AGGAAA-- --AGAAAAC( 541 AAC-C)GU-G AU|UCUCUCA GU--cAGC(G GCGA)GCG-A A-----GAGG GAUu------ 601 ------c--- ---------- ---------- ---------- -AACUCG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 -----uugcc gaaucggguc ---(uuauau )---gaccuc gaacuguggc accauuuuug 781 uggccguucu ua-uagggcu gg-ugcaggc guggcggaau ucaauugcaa agcaaa--cc 841 cguugcug-- ---------- ---------- ---------- ---------- aacac-auuu 901 a----caacc cuu-c-a-u( g-(-ugag-- )u)auuga-- ---------- --------GC 961 --|C(AAA)G |AAGG-(UGU CAGC)-CCAU UA|--cauuc cuuagccacg g-----agcc 1021 uacgcgccuc cucauguu-c ggu-ccaaga ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGCACU GUU(----UG 1141 GGAA)UGCAG UGUCAA---G CCGGCA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAUUUGU-- ---------- ---------- ---------- )CUG-CCAAG GUU----AAA 1381 UA-------- --------UA GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUUU GAAA-AGUAC UUU(gg-aa- )AGAG-AGUG A-CAUAGAAC C-UGAAAU-C 1501 GUGACAACG< ac---aaugg aaguaccucc a--uuucu-u uuuuu-uacg gccagaccca 1561 accucgccgc -------gca a--uuuccuu ccggg(guuc aaca-)ucc- ggugggccuu 1621 ca--cugugc ggguuucucu uuugagguca uggggugcgu gagugggcgg aauaaa-ggg 1681 ucgguguguu gugugugggu uuuuucucuc acucucuucc uccuucccug uu-------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ------cgug cg-ucuc--- gacgcuggcg 2521 -aug------ ---------- gaa-aug--- gggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCAAGGGa-g gaguau---( guaug-ugag 2641 aa)------- ---------- ---c-ucuu- ---------- --uuCUCGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -gugugauuu uacacccgu- ggcgugcgca auuucucuuu uuugu----- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ----guuuuu gcccaacgcc gg-cc----- 3121 --ggc-cccc cgug------ -gg--cugcg c]-------- ---------G CGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CCCC GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU ACGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACGU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUu--|-- -|-gucuuua a--------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------g 3661 a-aguAUUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGC- -----AUUGG UGUU--(cuu 3721 g-u)--AAUA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGCAAAcaa -ccca-gcc- 3781 uuaguua--- ---uuu---- --uaacaagg cuuuugggua cauaa----- ---------- 3841 ---------- ---------- ----gaauug a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGG--- AUAUGUG--G 3961 C|GUCA-AAA C-uugUG-GG CUCAUucu-- ------cgau acguga---- -AAAGGGUGU 4021 U--GGUGGAU AGGGACA-GU UGGACGGUGG CC(AUGG-AA GUC)GGCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GGC|CC-CGA AAA--UGGAU 4141 G--ACG-CU- UAAGCCCCA| U|gugcguga uuGCCCAU-- --UAUUCCU| (- -----)gccc ucccg-aUGU AGAC------ 4441 --GUG|GC-G UG-GG-GG-- --------u- -g-A-GGa-- c------GAA GCCG------ 4501 AuGGC(GCGA -)GCCUCGGa UGG|A-CCC| G--CCUCUA- GUGC-AGA-U CUUGGU|UG- 4561 GCGUAGCAAA -GAUCUAAC- G(gaa----- ---------- ---uauuuuu ucuuaaaugc 4621 aa)CGUUGGA |UACUGGAGC G-GGG|AAGG AUU|UCGUGC CA-ACG(-GC ACU)CG|UAC 4681 ACGAGUUGUU |-CGGucacu gagc------ --------------- ---------- ---------- -------ucc --ca-acu-- gc-agaCCGU 5581 A|CU--CAUC ACC(GCAUCA )GG|UCC-CC AAGCA(UCGA A)UGCUCU-| GGUAAc||A- 5641 UA-G--AGAA AG-GUACaCU C-AGGGAAGU CGGCAA-AAU -AGAUGCGUA AG(UUCG)CA 5701 AGAAGCAUU| GGCUCUGAG- ---------- -(-----)---- -------CUC AGAACU|G(- ----c)uuac 6601 ggcGGGGAAU C|-CAACUGU AU(AAUUA)A AACAUAGGUU UGUG|A--UG C|AUC(---c 6661 aagu)GGU-- ---------- --G-UAUGUC GCAAACUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---c------ ----(gaga) -----uucac ----CGACGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCUU-C( 6841 CAAUU)AGAG AC|GCGCAUG AAUGGAUUAA UGAGAUUCCC UCUGU-CCCG AGUUACUAUC 6901 UA|GCGAAAC G|ACA-GUCA AG(GGAA-CG GA)CUUGAAG -G-GCU-AAG CGGGGAAAGA 6961 AGACCCUGUU G|AGUUUGAC UCC-|AGUCU G---GCU-CU |GUGCGGCGA CUUUGGAGGU 7021 GUAGUAUAGG UGGAAGC--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -GCAA)---- 7141 ---------G C-UCAAAUGA AA-UACCACC |ACUCGGAA- -CGUUG-CUU CACUUAu--- 7201 ------(--- --)------| --a GACAucUGCC A-GAUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-U|AUCUGU (UACACGACA AC-)GCAG-G U|G|U|CCU- AAGGC-GAGC |UCAGU-GGG 7621 -A(ACA---- GAAA)UCUCA CGUGGA|AC( A|C--AAGC) GUAAAUG-CU U-GCUUGAUU 7681 aACGAUUU(c c--aguac-- )GAAUCGAGA CUGC(-GAAA )GCAAG-|GC --CAG|CGA- 7741 UCCUUUGc-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- gaagaacagg aaau-aug(- -aACA-A--A U---)----- ---------- 7861 -----cau|a cCAGAG-gug uC|AGA--AU AAUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCGGCCAAGC G(UUCAU)AG CGACGUCGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AACC|UA G-CGCCG(CA -GA-)AGACG CUAA-GGGU| UGGAU(UGUU C)ACCCACUG 8041 ACAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUGGUU 8101 UUACCCUACU UGGCU-ggcaGG CA-UC-gu-G AGGGAAGUAU GGGG(UAGUA 8281 C(GAGA)GGA AC-)UCCCAU G|CCGUGCCU CUGGUUUCUG GAG|-UUUGU C(GAAG)GGC 8341 AAGUGCUCCG A-CGCUAUC- GC-ACGG--U GGUUCUCGGC U(GAACGCCU C-U-A)AGCC 8401 AGAAACCA-G UCCC-aa-ga ccgG--GUGC C --|------( ---)------ 8701 --uuuugucc |cucuc(-ca aacga)ga-g uacau----g cau|gggcug gcaugagc-- 8761 -g-g-cacgc uc-ca----- -cgaccgugg ggcucgag(g ggca)cuuua cgucccgagg 8821 cgc---ugaa ----ccuug- aug|-cuugg -|--aauuuc a--u-g-cuc ag----g-ga 8881 cuuuu|---- ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.rotatori 9262 bp RNA RNA 11-JAN-191 DEFINITION Trypanosoma rotatorium. ACCESSION No information KEYWORDS No information. SOURCE Trypanosoma rotatorium. ORGANISM Trypanosoma rotatorium. REFERENCE 1 (bases 1 to 6362) AUTHORS Maslov,D.A., Lukes,J., Jirku,M. and Simpson,L. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U39582 LOCUS TRU39582 995 bp rRNA INV 26-NOV-1995 DEFINITION Trypanosoma rotatorium large subunit ribosomal RNA. ACCESSION U39582 KEYWORDS . SOURCE Trypanosoma rotatorium. ORGANISM Trypanosoma rotatorium Eukaryotae; mitochondrial eukaryotes; Euglenozoa; Kinetoplastida; Trypanosomatidae; Trypanosoma. REFERENCE 1 (bases 1 to 995) AUTHORS Maslov,D.A., Lukes,J., Jirku,M. and Simpson,L. TITLE Phylogeny of trypanosomes as inferred from the small and large subunit rRNAs: implications for the evolution of parasitism in the trypanosomatid protozoa JOURNAL Unpublished REFERENCE 2 (bases 1 to 995) AUTHORS Lukes,J. TITLE Direct Submission JOURNAL Submitted (27-OCT-1995) J. Lukes, Institute of Parasitology, Dept. of Molecular Parasitology, Branisovska 31, Ceske Budejovice, 37005, Czech Republic COMMENT NCBI gi: 1073254 FEATURES Location/Qualifiers source 1..995 /strain="B21" /organism="Trypanosoma rotatorium" /specific_host="Rana catesbeiana" rRNA 1..995 /product="large subunit ribosomal RNA" BASE COUNT 274 a 215 c 297 g 209 t ORIGIN BASE COUNT 274 a 215 c 297 g 209 t 8267 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~|~(~~~)~ |~~~~~(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ugggucuggA GAGUA-GGAA GACCGAUAGC GAAC-AAGUA GC(GUGA)G- 1441 C-GAAAGUuu gAAA-AGCAC UUU(gg-aa- )AGAG-AGUG A-CAUAGAAC C-UGAAGU-C 1501 GUGACAAUG< ac---aaugg aa--guaccu ccauuuca-a cggccaaaa- -ccagccuca 1561 ca-------- -------gca u--uu-uccg -gcgg-guuc aaa---ucc- -gu-cgggua 1621 acc-aagugc -aagaaacuu a--gagguca uggug----- aaaug----- g----g-cgg 1681 agaguaag-- ---------g ggugcugcac ggcgaaacgc ga-------- --gcgg---- 1741 ---------- -ugcu----- ---------- uucuucucc- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -------gug -auccuc--g auguuggcga 2521 a--------- ---------- ggaagug--- gggugccccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC AAACAGACGC GCAAGGGgag gagaua---( u-cgu-ugcc 2641 ag)------- ---------- ---u-acuu- ---------- --cuCUCGUA CU(GAAA)GG 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 -augcgaauu -gcaucugu- ggugugcaca c-----auuu -aaaa----- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- -------a-u gcccaacacc ga-cc----- 3121 --ggc-cccc cgug------ -gg--uugag u]-------- ---------U GGAGUGUGC- 3181 -CUG-UUUGG ACCCGAAAGG U-GGUG-AAC UAUG-CCUG- AA|C-AAGGU GAAGCCCGGG 3241 (GAAA----- -----)CCCA GGU-GGAGGC CUG-UA---G CG-AUGCUGA (CGUGCAAA) 3301 UCG-C-UCGC AUGAUUUGGG UAUCGGA--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC ACCUAGUAGC UGGUUCACGU CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUu--|-- -|-guuugaa ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------a 3661 a-aguAUUGU -G|CGG--UA AA-GCAAAUG AUUAGAGGC- -----AUUGG UGUU--(cuu 3721 a-g)--AGCA U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |UGgccaaac aaaccuacc- 3781 uuagccaaca ---------- ----gcaagg u---cggaua gaaaagaauu a--------- 3841 ---------- ---------- ---------- a|GG-CACCA -AGU-GGGCC -UUC-UUCG( 3901 G-UAAG)CGG AGC-AGGC-G AUGCGG(AA- UGAA)CCG-- CUUAGGG--- AUAUGUG--G 3961 C|GUCAAAAC u-ua-UG-GG CUCAUucu-- ------cgau acguga---- -AAAGGGUGU 4021 U--GGUGGAU AGGGACA-GU UGGGCGGUGG CC(AUGG-AA GUC)GGCACC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCAACC -GAAUCCACC GG~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (2)-Granul 9262 bp RNA RNA ~?~???? DEFINITION Granuloreticulosea. ACCESSION No information KEYWORDS No information. SOURCE Granuloreticulosea. ORGANISM Granuloreticulosea. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS G.oviformi 9262 bp RNA RNA 07-JUN-1994 DEFINITION Gromia oviformis.; LSU ribosomal RNA. ACCESSION X79511 KEYWORDS LSU ribosomal RNA. SOURCE Gromia oviformis. ORGANISM Gromia oviformis. REFERENCE 1 (bases 1 to 1507) AUTHORS Pawlowski,J., Bolivar,I., Guiard-Maffia,J. and Gouy,M. TITLE gene sequences Phylogenetic position of formainifera inferred from LSU rRNA JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1507) AUTHORS Pawlowski,J.W. TITLE Direct Submission JOURNAL Submitted (31-MAY-1994) to the EMBL/GenBank/DDBJ databases. J.W. Pawlowski, University of Geneva, Dept of Zoology & Animal Biology, 154 route de Malagnou, 1224 Chene-Bougeries, SWITZERLAND STANDARD full automatic COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X79511 NCBI gi: 498717 BASE COUNT 393 a 299 c 439 g 375 t 7756 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~(~~~~~~ ~)~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~cgaucu gaaauaag-g caag---acu 481 ac|uggcuga -a--uu|UA( AGCA)UA-ua auuaag-c-c a-aggaaa-- --aGAAACU( 541 AAC-A)AG-G AU|UCCCCUA GU---AAC(G GCGA)GUG-A A-----gcgc gaag------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ------aau- 661 -ugaaaagcg ugcguu---- ---------- cccuguugaa ugucacgcgu ugua(aucua 721 )uagaagugu uguuagcaaa ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- --ccg-acca 901 gaucuaaa-- --u-uca-u( ---uggaau- --)gugau-- ---------- --------GU 961 --|C(AUA)G |AGGG-(UGA GAAC)-CCCG UU|--uaugg gcuuggc--- ---------- 1021 -----uacgg augc------ ----gucc-- ---------- ---------- ---------- 1081 ---gacgcac uuucgaa--- ---------- --------|G AGU-CGCGUU CCU(----UG 1141 GGAU)UGGAG CGCAAA---g uuGGUG-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 u-aaacu--- ---------- ---------- ---------- )CCAuCUAAA GCU----AAA 1381 UA-------- ---------- uuugc-gAGA GACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G-gaaaGAUG -AAA-AGaac uuu(ga-aa- )agag-aguu a-aaaagucc u-ugaaau-u 1501 gcugg-aag< ag---aagcg auuugagc-- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- aagugaugu- -cgguagggu acuuucuugu gugcaccg-u ugccgauguc 1681 accgguuacg aggagacgcg aguc------ ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ----cuucgu cuggagacuu guuggcugug guguugcgag guucuguccu gccggauucg 2041 ucagaaucag uuuggagcau agacgaaagc ccguagggaa gguagagugg uuggagccuu 2101 gcguuccgau ugcuuguuac agcccugugg uuauacucgu gcucuggacu gaggccuaca 2161 gugcucgcuc ccauuccggg aguagugugg ugcuccguuu ucuugugcgu cgcguccuug 2221 gacagcaaag cugugucugg cguugugcgu uugcauugag guggcagccc aacagagcau 2281 ucgagacucu gacaaaaauu ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- gcucgaaccg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUAUAU GCGAGUAu-g -agggu---( ------guga 2641 aa)------- ---------- ---a-ccc-- ---------- ----auaaug cg(-aaa)ug 2701 a-[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 -----aggug aagg-uug-a uuu------- --g------- --uuuga--- -------cc- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 -------gag auca------ ---------- -------uau ccugucaccc uuucgggggu 3061 gaugggugcc ug---aucgg ccaacccagc cucguguugg ggaugag--- ---------- 3121 ---------- -c-------- ---------- -]-------- ---------a agaGCAUAU- 3181 -CUG-UUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AG|C-AGGGU GAAGUCAGGG 3241 (GAAA----- -----)CUCU GAU-GGAAGC UCG-AA---G CG-AUACUGA (CGUGCAAA) 3301 UCG-U-UCGU CUGACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUG CGAAGUUUCC --(CUCA)GG 3421 AUAGC-ugga -acuc--|-- --acacgcag u--------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 -----uuuau -c|agg--ua aa-gcuaaug auuagaggc- ---a-c-cug aauu--(gaa 3721 a-c)--aauu u-gga-|ccu auuc-UCAAA CUUUA-aaug |gguaag-ac --gcccggu- 3781 guugcuu-ga uuugaacccg ggccuacg-- ---------- ---------- ---------- 3841 ---------- ---------- ----aaugcg u|ag-uucuu -AGU-GGGCC -CUU-UUUG( 3901 G-UAAG)CAG AAC-GGGC-G AUGCGG(GAU -GAA)CCG-- gacgcgu--- gaguaag--g 3961 u|gcca-aag g-u--guugg cucau----- ---uua--ga ccc-caug-- -AAAGG-UGU 4021 U--gguunaU AUAGACA-GC AGGACGGUGG UC(AUGG-AA GUC)GAAAUC CG|C(UAA)G 4081 |GAGUGC(GU AAC~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~(~~ ~~~-)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- (~~~~~)~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~~(~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS A.tepida 9262 bp RNA RNA 11-JAN-191 DEFINITION Ammonia tepida. ACCESSION No information KEYWORDS No information. SOURCE Ammonia tepida. ORGANISM Ammonia tepida. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: Z30146 LOCUS AT28SRRNA 1588 bp DNA INV 04-JAN-1995 DEFINITION A.tepida gene for 28S ribosomal RNA. ACCESSION Z30146 KEYWORDS 28S ribosomal RNA. SOURCE Ammonia tepida. ORGANISM Ammonia tepida Eukaryota; Animalia; Protozoa; Granuloreticulosa; Foraminifera; Rotaliina. REFERENCE 1 (bases 1 to 1588) AUTHORS Pawlowski,J., Bolivar,I., Guiard-Maffia,J. and Gouy,M. TITLE Phylogenetic position of foraminifera inferred from LSU rRNA gene sequences JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 1588) AUTHORS Pawlowski,J. TITLE Direct Submission JOURNAL Submitted (15-FEB-1994) to the EMBL/GenBank/DDBJ databases. Manolo Gouy, Universite Lyon I, 69622 Villeurbanne, France STANDARD full automatic COMMENT NCBI gi: 619063 FEATURES Location/Qualifiers source 1..1588 /organism="Ammonia tepida" rRNA <1..>1588 /product="28S ribosomal RNA" BASE COUNT 472 a 359 c 362 g 395 t ORIGIN BASE COUNT 472 a 359 c 362 g 395 t 7674 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~(~~~~~~ ~)~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~cacau cagcucga-g ugag---aau 481 ac|GCGCUAA -A--CU|UA( AGCA)UA-UC AGUCAG-C-G Cacguaaua- auAGAAACU( 541 AAC-C)AG-G AU|UCCCUUA GU---AAC(G GCGA)GUG-A A-----CUGG GAug------ 601 -------cca auauaaaaua uguaccucgc gugcauaaau uAGCCCG|uc gauacuaucc 661 uagcguau-- ---------- ---------- ---guaccgg ucuucggguc gguacucaaa 721 uacgcgggaa uuguagcauc guaauaaaau auacagcacg cacacacaca cacugccaac 781 augcguacca cuuguaaaca cacagcguc- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- --ucc-gcgu 901 ugaagcaagu u-a-uau-c( ---cucuug- --)gauau-- ---------- --------GC 961 --|C(AUA)G |AGUG-(UGA CAGC)-CACG UU|ucacccu uaguacgc-- acacacacau 1021 acacacggcu cgugcgagug caauacguau auauucuaua accu------ ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGAGUU AUU(----UG 1141 GGAC)UAUAG CUCUAA-uag uuUGGUuG(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- --------gu 1321 gguaaugaca ---------- ---------- ---------- )CAU-CAAAG GCU----AAA 1381 UAuugguuag ucgaug--ca uauug-cGGA GACCGAUAGC AUAC-AAGUA CC(GUAA)G- 1441 G--aacGAUG -AAA-AGcac ccu(au-ug- )aguu-cacg g-cgcagacu c-ugauac-u 1501 ucugu-auc< u------ugu ccagcgccaa caacuacagu gggagugaaa gagagag-ug 1561 aaau-cgccu auauauauaa cauaugcacu acacacagua acugcaugca guca---gcg 1621 u--u------ ---------- ---------- ------agua caau----cg gacag---ag 1681 ugu------- ---------- ---------- ------cgua uauaaca--u auggc-cgcc 1741 -uaa-u---- --acauau-- ccauacaaug uauuauggcc uggcccauag uggguucgcc 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 --cg-cua-- --------ua cgc-gac--a cgacuguacg >------ACC CGU(UUUGAA 2581 AC)ACGG|AC CAAGG-AGUU CAACUGGAUU ACGAGUCg-u -cgagcaua( uauauuuucc 2641 aa)------- ------uauu uaua-cuca- ---------- -cacGGCauA GC(GAAA)GC 2701 AA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------c 2881 cuuaauccuu uauacagugc uaggucggcc gucaaa-agc ucgaccgcag cacgcgc-ug 2941 a--------- ---------- ---------- ---------- ---------- ---------- 3001 -gugaguaua --uacgugcg gaccuccgcg ucaacgcgua uacc------ ---------- 3061 ---------- ---------- ---------- ---------u gcguu--u-- ---auuc--- 3121 ac-a---g-- --gaucacuc aagc--guuc a]-------- ---------a cgaGUAUAU- 3181 CUUG-UUGAG ACCCGAAAGA U-GGUG-AAC UAUG-CUCG- GA|U-AUGGC GAAGUCAGGU 3241 (GAAA----- -----)ACUU GAU-GGAAGC UUgcguuguG CG-GAACUGA (CGUGCAAA) 3301 UCGuuaCCGC CUAACCUGAG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-ucag -ugca--|-- ---auaaaaa aaauccaaug gcguag---- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 -----cacaa -a|ggg--ua aa-gc-aaug auacgcggua ucuguggguc uuau--(uua 3721 a--)--auga ccucgg|ccu ucuc-UCAAA CUUUAaaucu |-gugcg--- ----uaacu- 3781 auuauuuaua gcguguaccu aauacuuauu guggacacag caauauaaua gc-------- 3841 ---------- ---------- ----aaugac -|----ucgu -AGU-GGGCC -AUU-UCUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGAGG(GAU UCAA)CCU-- gacguuuuaa agauaagc-g 3961 g|gcuu-aau c-au-aucug cu---cuaac cuucc---ga uaaacgcg-- -AAAGGGUAU 4021 UCCAUGUGGU GUAGACA-GC AGGACGGUGG CC(AUGG-AA GUU)GGAAUC CG|C(UAA)G 4081 |GAGUGC(GU AAC~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~(~~ ~~~-)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- (~~~~~)~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~~(~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS R.vilardeb 9262 bp RNA RNA 11-JAN-191 DEFINITION Rosalina vilardeboana. ACCESSION No information KEYWORDS No information. SOURCE Rosalina vilardeboana. ORGANISM Rosalina vilardeboana. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: Z30148 LOCUS RV28SRRNA 1807 bp DNA INV 04-JAN-1995 DEFINITION R.vilardeboana gene for 28S ribosomal RNA. ACCESSION Z30148 KEYWORDS 28S ribosomal RNA. SOURCE Rosalina vilardeboana. ORGANISM Rosalina vilardeboana Eukaryota; Animalia; Protozoa; Granuloreticulosa; Foraminifera; Rotaliina. REFERENCE 1 (bases 1 to 1807) AUTHORS Pawlowski,J., Bolivar,I., Guiard-Maffia,J. and Gouy,M. TITLE Phylogenetic position of foraminifera inferred from LSU rRNA gene sequences JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 1807) AUTHORS Pawlowski,J. TITLE Direct Submission JOURNAL Submitted (15-FEB-1994) to the EMBL/GenBank/DDBJ databases. Manolo Gouy, Universite Lyon I, 69622 Villeurbanne, France STANDARD full automatic COMMENT NCBI gi: 619510 FEATURES Location/Qualifiers source 1..1807 /organism="Rosalina vilardeboana" rRNA <1..>1807 /product="28S ribosomal RNA" BASE COUNT 532 a 384 c 416 g 474 t 1 others ORIGIN BASE COUNT 532 a 384 c 416 g 474 t 7456 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~(~~~~~~ ~)~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~cacau cagcucga-g ugag---gau 481 ac|GCGCUAA -A--CU|UA( AACA)UA-UC AGUCGG-C-G Cacguaaca- auAGAAACU( 541 AAC-C)AG-G -U|UCCCUUA GU---AAC(G GCGA)GUG-A A-----GCGG GAag-uaaug 601 cauacgauca cguaagauuc gucucgcgug uuucguagcu aAGCCCA|-- ---------- 661 ---------- -------ucg auagaauccg uucuucagug ccucggccca ggggaggaau 721 uguagcaucg aaauuuaaaa caaaucaugu uguacugucu auuacuuaca auugacuaua 781 cuacuaaccu cugguaacua ucucucucac aauuuacacu uacauuaaac acagugagcg 841 cgcgccgaag uugucguacg uacaauacgu gagcaagc-- --------au ucaugucuua 901 uacauacaau caaagacaca gcguuuagcg cuggaaagca auucguaguu uuacugcaGC 961 --|C(AUA)G |AGUG-(UGA CAGC)-CACG UU|------- ------uuaa ugguuaugca 1021 ugaauacncu gccgcguaaa cuuuguacac gcauacguau acgucauuc- --------aa 1081 uagcacagua guuuuguaau ucgugauugu ugauaccu|G AGU-CGAGUU GUU(----UG 1141 GGAC)UACAG CUCAAA-uug uuUGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- --------gu 1321 gguaaugaca ---------- ---------- ---------- )CAU-CAAAG GCU----AAA 1381 UAaugguguu uaaucacaac augcaauGGA AACCGAUAGC AAAC-AAGUA CC(GUAA)G- 1441 G--aacGAUG -AAA-AGcac ccu(uc-au- )agca-cgca u-gcuacggc a-auguga-u 1501 uuaua-uuu< acgcauuaca gcaugcaagc uccaaaggga gugaaagaga gagugaaauc 1561 gccuuacagc gaaacaacaa uacuaacuuu guauaacaca gauuaacagc acgucgcgca 1621 ucguauugau cuuaacugua ucauacagau ucacgcgucg ugcgcaauac acauuuaauc 1681 uauauuucag cgaaguacaa ucggacagag cgcuuuugcu ucaauucuuu gaagguagcg 1741 ggcuauuaug caacguauac ugcauguaug ccacgcuauu ugucuucuga caaaa----- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- cga-ggc--g caacuaucca >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUU CAACUGGAUU GCGAGUCg-u -agagu---( uauacacaau 2641 aa)------- ---------- ---a-cuca- ---------- uugcGGCGAA GC(GAAA)GC 2701 AA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ------aauu gugccaa-cu c--------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( auuuaaacca ----)----- ---------- -------gag -ugcagcacg 3061 ggcugauugu gg---acaug cgcgugaacu cguacgua-u gcuuugaucu gucauucgug 3121 acuaa-uguc aaa-gaucaa ucaa---gcc a]-------- ---------g agaGCAUAU- 3181 -UAG-UUGAG ACCCGAAAGA U-GGUG-AAC UAUG-CUCG- GA|C-AUGGU GAAGCCAGGU 3241 (GAAA----- -----)ACUU GGU-GGAAGC UUgcguuguG CG-GAACUGA (CGUGCAAA) 3301 UCGuugCCGC CUGACCUGAG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC AUCUAGUAGC UGGUUCUCUC CGAAGUUUCU --(CUCA)GG 3421 AUAGC-ucga -auua--|-- --aucaauau caguaaagag u--------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 -----aacac -a|agg--ua aa-gc-aaug agacgcggua ucuguggguc uuau--(uua 3721 a--)--auga ccucgg|ccu ucuc-UCAAA CUUUAaaucu |-gugcgaca acugucugcc 3781 uucuuuaaag cgcuguauug cauuugugau gcgcgcgcga ggugacguuu ugu------- 3841 ---------- ---------- ----aucua- u|aa-uucgu -AGU-GGGCC uAUU-UCUG( 3901 G-UAAG)CAG AGC-UGGC-G AUGAGG(GAU UCAA)CCU-- gacguucuca agauaagccg 3961 g|gcuu-aau c-au-aucug cu---ccaac cuucc---ga uaaacgcg-- -AAAGGGUGU 4021 UCCGUGUGGU GCAGACA-GC AGGACGGUGG CC(AUGG-AA GUU)GGAAUC UG|C(UAA)G 4081 |GAGUGC(GU AAC~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~(~~ ~~~-)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- (~~~~~)~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~~(~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS G.mediterr 9262 bp RNA RNA 11-JAN-191 DEFINITION Glabratella mediterranensis. ACCESSION No information KEYWORDS No information. SOURCE Glabratella mediterranensis. ORGANISM Glabratella mediterranensis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: Z30149 LOCUS GM28SRRNA 1499 bp DNA INV 04-JAN-1995 DEFINITION G.mediterranensis gene for 28S ribosomal RNA. ACCESSION Z30149 KEYWORDS 28S ribosomal RNA. SOURCE Glabratella mediterranensis. ORGANISM Glabratella mediterranensis Eukaryota; Animalia; Protozoa; Granuloreticulosa; Foraminifera; Rotaliina. REFERENCE 1 (bases 1 to 1499) AUTHORS Pawlowski,J., Bolivar,I., Guiard-Maffia,J. and Gouy,M. TITLE Phylogenetic position of foraminifera inferred from LSU rRNA gene sequences JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 1499) AUTHORS Pawlowski,J. TITLE Direct Submission JOURNAL Submitted (15-FEB-1994) to the EMBL/GenBank/DDBJ databases. Manolo Gouy, Universite Lyon I, 69622 Villeurbanne, France STANDARD full automatic COMMENT NCBI gi: 619157 FEATURES Location/Qualifiers source 1..1499 /organism="Glabratella mediterranensis" rRNA <1..>1499 /product="28S ribosomal RNA" BASE COUNT 444 a 309 c 340 g 406 t ORIGIN BASE COUNT 444 a 309 c 340 g 406 t 7763 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~(~~~~~~ ~)~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ac|GCGCUAA -A--CU|UA( AACA)UA-UC AGUCGG-C-G Cacgcaau-- --AGAAACU( 541 AAC-C)AG-G AU|UCCCUUA GU---AAC(G GCGA)GUG-A A-----GUGG aGau------ 601 ---------- ---------- ---------- -auauaaguu cAGCCCA|ac gauaaaaucu 661 augguuagcu ggcuaggcuu cugucuucca gcugccagga auuguagcau cguaauacuu 721 aaaacacaca cacuauguuu --uaaaauau a--aaaucaa uguuguaucu gacucaacgu 781 augauaucau ug-caaucua ua-cauucuu accuaaacac acagcguuu- agcg------ 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 --uggaaa-- -----gcaa- ---gucuau- ---aucau-- ---------- --------GC 961 --|C(AUA)G |AGUG-(UGA CAGC)-CACG UU|-uaccuu gguaaacu-- ---------- 1021 ---------- ----cucauu agacacgcaa uuuuugauua caagauacg- ---------- 1081 uaaaucauuc gauuuaaaaa caaacacacc uuaacccu|G AGU-CGAGUU GUU(----UG 1141 GGAC)UACAG CUCAAA-uug uuUGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- --------gu 1321 gguaaugaca ---------- ---------- ---------- )CAU-CAAAG GCU----AAA 1381 UAuugguguu uuauac--ga uugcaacGGA GACCGAUAGC AAAC-AAGUA CC(GUAA)G- 1441 G-gaacGAUG -AAA-AGcac ccu(uu-uu- )agca-cgug c-gucacucu g-uguacg-c 1501 acaag-cuc< c-----aucg ggagugaaag agagagugaa aucgccugaa cuuuuuuaaa 1561 ucaacacaca cugauuuuua auaaauucag cgaaguacaa ucggacagag ugucuuuggc 1621 ucuuuuuuga gcguggcggg cugcuaugug ucgacucaca uugcaugcuu ugcuuucauu 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- caa-gac--a uaacuauucg >------ACC CGU(UUUGAA 2581 AC)ACGG|AC CAAGG-AGUU CAACUGGAAU GCGAGUCg-u -agagu---( ------uauc 2641 aa)------- ---------- ---a-cucu- ---------- -uucGGCGAA GC(GAAA)GC 2701 AA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -----auuuu gcgcgaa-uc u--------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( uuu------- ----)----- ---------- -------aga -ugcagcgcg 3061 ggcugauaau gu---augcu acguagagcu u--------g cugugcgugc accugcuaac 3121 uucug-uugg cag-gacuua ucaa---gcu a]-------- ---------a agaGCAAUU- 3181 -UAG-UUGAG ACCCGAAAGA UcGGUG-AAC UAUG-CUCG- GA|C-AUGGU GAAGCCAGGU 3241 (GAAA----- -----)ACUU GGU-GGAAGC UUgcguuguG CG-GAACUGA (CGUGCAAA) 3301 UCGuuaCCGC CUGACCUGAG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-ucga -uaau--|-- ---auaaccg agu------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 -----aacac -a|agg--ua aaggc-aaug agacgcggua ucuguggguc uuau--(uuu 3721 a--)--auga ccucgg|ccu ucuc-UCAAA CUUUAaaucu |-gugcg-aa aacauauugu 3781 uuacuuaaaa gcauuuuuaa ugcgugaaac uauguuucau ---------- ---------- 3841 ---------- ---------- ----aucuaa c|aa-uucgu -AGU-GGGCC -AUU-UCUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGAGG(GAU UCAA)CCU-- gacguuuuca agauaagccg 3961 g|gcuu-aau c-au-aucug cu---ccaac cuucc---ga uaaacgcg-- -AAAGGGUGU 4021 UCCGUGUGGU GCAGACA-GC AGGACGGUGG CC(AUGG-AA GUU)GGAAUC CG|C(UAA)G 4081 |GAGUGC(GU AAC~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~(~~ ~~~-)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- (~~~~~)~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~~(~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Trocham.sp 9262 bp RNA RNA 11-JAN-191 DEFINITION Trochammina sp.. ACCESSION No information KEYWORDS No information. SOURCE Trochammina sp. ORGANISM Trochammina sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: Z30147 LOCUS TS28SRRNA 1748 bp DNA INV 04-JAN-1995 DEFINITION T.sp. gene for 28S ribosomal RNA. ACCESSION Z30147 KEYWORDS 28S ribosomal RNA. SOURCE Trochammina sp. ORGANISM Trochammina sp. Eukaryota; Animalia; Protozoa; Granuloreticulosa; Foraminifera; Textulariina. REFERENCE 1 (bases 1 to 1748) AUTHORS Pawlowski,J., Bolivar,I., Guiard-Maffia,J. and Gouy,M. TITLE Phylogenetic position of foraminifera inferred from LSU rRNA gene sequences JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 1748) AUTHORS Pawlowski,J. TITLE Direct Submission JOURNAL Submitted (15-FEB-1994) to the EMBL/GenBank/DDBJ databases. Manolo Gouy, Universite Lyon I, 69622 Villeurbanne, France STANDARD full automatic COMMENT NCBI gi: 619567 FEATURES Location/Qualifiers source 1..1748 /organism="Trochammina sp." rRNA <1..>1748 /product="28S ribosomal RNA" BASE COUNT 549 a 301 c 358 g 539 t 1 others ORIGIN BASE COUNT 549 a 301 c 358 g 539 t 7515 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~(~~~~~~ ~)~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~cacau cagcucga-g ugag---gau 481 ac|GCACUAA -A--CU|UA( AACA)UA-UC AGUCGG-C-G Cacggcaaca auAAAAACU( 541 AAC-C)AG-G AU|UCCCUUA GU---AAC(G GCGA)GUG-A A-----GUGG GGag---aua 601 agugaauaca ucguguaauc uuuuuuacgc guuuguagca aAGCCCG|-- ---------- 661 ---------- ---------- --ucgauaaa auccauuguu nauugauaac uucgguuauu 721 caauaacaag gaauuguagc --aucgaaaa u--aauauca uucaaguugu uauaauuuau 781 uuauacugua aa-uuauuuu ac-acacacu agugcaacaa uuauuuuugc cguuuguaau 841 uauuaaca-- ---------- ---------- ---uaaua-- --------uu uuaauaucaa 901 ccaauuga(a acacacagcg )uuuagcgcu ggaaagcaau uuuuguaguu uaucugcaGC 961 --|C(AUA)G |AGUG-(UGA CAGC)-CACG UU|---uuau ggauuaaaau auuauuauua 1021 caauuuaaca cgcauuaaua uuaauugucc aucuuauuac aguuauaaa- ---------- 1081 uuauaaacgu aauucgugaa uguugaaccu --------|G AGU-CGAGUU GUU(----UG 1141 GGAC)UACAG CUCAAA-uag auUGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- --------gu 1321 gguaaugaca ---------- ---------- ---------- )CAU-CAAAG GCU----AAA 1381 UAuugguguu uauuuu--ac augcaacGGA AACCGAUAGC AAAC-AAGUA CC(GUAA)G- 1441 G-gaacGAUG -AAA-AGcac ccu(uc-au- )agca-cgca u-gcagcgca u-uuaguc-u 1501 ucggg-cca< uuugcauuuu gcuugcaagc ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- -uccaaaggg 1681 agugaaagag agagugaaau cgccuuacag aaaauauaau uucugcuuua uaauauuuug 1741 aauauuuaca cacaauugau uaauauuauu aauuauuaug ugaagcauuc --uuuauuua 1801 uuuauucagc guaauacaau cggacag--- agcgucuuug caucuuuuug augguaacga 1861 acuauuaugu aaauauuuau uacauuguau guuuuguuau auuuaaagg- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- -----ac--g caacuauccg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUU CAACUGGAUU GCGAGUCg-u -agagu---( uuaac-acaa 2641 a-)------- ---------- ---a-cucau uauauauaua auacGGCauA GC(GAAA)GC 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ------aauc gugugau-gu aucau----- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( gcaaca---- ----)----- ---------- --gu-gauac -ugcaacaca 3061 ggcugaucau gg---auaug cgcugugucu uagauagagc guauacguaa cuuuauuuuu 3121 cgaaa-uuua uuuacgauug guua-a-gcu a]-------- ---------a agaGCACUU- 3181 -UAG-UUGAG ACCCGAAAGA U-GGUG-AAC UAUG-CUCG- GA|C-AUGGU GAAGUCAGGA 3241 (GAAA----- -----)UCUU GAU-GGAAGC UUgcguuguG CG-GAACUGA (CGUGCAAA) 3301 UCGuuaCCGC CUGACCUGUG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU CAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-ucga -auuu--|-- --auaucaug agua------ ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ------acac -a|aggg-ua aaggc-aaug agacgcggua ucuguggguc uuau--(uua 3721 a--)--auga ccucgg|ccu ucuc-UCAAA CUUUAaaucu |-gugcgauu acgcaugcuu 3781 acuuagaaug uauaaaauuu cuuauauuuu auacagugaa guugcguuua uuuauauuau 3841 ---------- ---------- ----aucaaa -|aa-uucgu -AGU-GGGCC -AUU-UCUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGAGG(GAU UCAA)CCU-- gacguuuuca agauaagccg 3961 g|gcuu-aau c-au-aucug cu---ccaac cuucc---ga uaaacgcg-- -AAAGGGUGU 4021 UCCGUGUGGU GCAGACA-GC AGGACGGUGG CC(AUGG-AA GUU)GGAAUC CG|C(UAA)G 4081 |GAGUGC(GU AAC~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~(~~ ~~~-)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- (~~~~~)~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~~(~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (2)-Micros 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS Nos.apis.1 9262 bp RNA RNA 02-JAN-1998 DEFINITION Nosema apis.; . ACCESSION U76706 KEYWORDS . SOURCE Nosema apis. ORGANISM Nosema apis. REFERENCE 1 (bases 1 to 2650) AUTHORS Rice,R.N. TITLE Direct Submission JOURNAL Submitted (30-OCT-1996) Botany and Zoology, School of Life Sciences, Australian National University, Canberra, ACT 0200, Australia STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U76706 BASE COUNT 834 a 337 c 562 g 822 t 6707 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~aguuu uauauuuGCC CACACAUGGG AUC|AAUAGG 61 |GUACCAU|A A|-CGAGGAA GAU|CGUA(- -GCGG-AA)U |AC-GAAAg- -------|[- 121 ---------- ---------- ---------- ---------- ---------- -------]-- 181 ---------- ---------- -----auu|A UUUAUC-GCA U---(----- )----|---- 241 ---------- -(-------- ---------- ---------- ---------- ---)------ 301 ---------- ---------- --------au auua--(--- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ------aua- )--uaaua-- ---------- --G----AUU 481 AC|CCUUUGA -A--CU|UA( AGCA)UA-UC AUUAAA-A-G G-AGGAGA-- --AGAAACU( 541 AAC-U)AG-G AU|UUCUUUA GU---AGC(A GCGA)GUGuA A-----CAAG AAAC------ 601 ---------- ---------- ---------- ---------- -AACCCU|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ------(--- ---)------ ---------- ---------- ---------- ---------- 841 ---------- ---------- --------ug auuguaau-- --------cc uuua--ugga 901 gcuguaaa-- --u-cau-a( u-(auuuua- )u)uucuua- ---------- ------u-UU 961 --|C(GUA)G |AGGA-(UGU -AUA)-UCCG UU|--auaaa ugagauauau a-----aaag 1021 uaauu----- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGGGCU GCU(----UG 1141 GUAG)UGCAG UUUGAA---U AUAGGU-A(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 G-AAUGAGA- ---------- ---------- ---------- )UAU-CUAAG GUU----AAA 1381 UA-------- ---------- -UAAU-GGUA CACCGAUAGC AAAU-AAGUA CU(GCGA)A- 1441 G-GAACUU-- ---------- ---(------ )--------- ---------- G-UGAAAA-U 1501 GUGUG-GGU< ua--uag-cc uua------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- (uu-uu)--- -----uaagg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGAU UAUAAUUAUA GCGAgaua-- ac-------( -------aau 2641 --)------- ---------- -------gu- ---------- ---agucguu au(uagc)uu 2701 g-[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------a 2881 u--------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ---------- ----)----- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---(------ -)-------- ---------- -]-------- ---------- -AAGUUAUA- 3181 -AUU-AUAAG ACCCGAAACA C-AGUG-AAC UAUA-CAUG- UU|C-UGGUU GAAGAUAAGC 3241 (AACA----- -----)GUUU AUU-GGAAGA CCA-ua---A UC-AUUCUGA (CGUGCAAA) 3301 UCG-A-UGAU UUAAGAUGUG UAUAGUG--G C--------- ---------- ---(GAAA-- 3361 --G)G---CC AAU-CGAACU GUGUGGUAGC UGGUUCACAG CGAAAUGUCU --(CUAA)GG 3421 ACAGC-AGUC -AU-uuu|uu a|-----gga ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ------caua -g|aug--ua gg-ac-acug ---------- ------uuau acua--(uuu 3721 a--)--uagu a-uga-|g-- -------aaa uuacggaauu |cuaugga-a -cauuguaa- 3781 au--uaa-gu uua---cgau gugu------ ---------- ---------- ---------- 3841 ---------- ---------- --aucuaaga g|uA-UGACU -AGU-GGGCA -CAU-GAUU( 3901 G-UAAG)AAU GAU-GUGC-A AAAAGG(GA- UGAA)CCU-- UAUGAAA--- CAUUAAA--U 3961 A|UUcu-a-A --Au-AG-UA Gacac----- --------ua uaccau---- -AAAUAUGAU 4021 G--AAUACAU UGAGACA-GU AGGGCGGUUG UU(AUGG-AA GUA)GAAAUC CG|C(UAA)G 4081 |AAACGU(GU UACA)AC|-- -GUACCUACC -GAAUGUAUU AUU|GU-AUA AAA--UGGAA 4141 G--AAG-Au- ua-CUACUU| U|-------- --UAUgag-- --AUGUUUC| (- -agu-)---- -auuc-AGGU AGCU------ 4441 --GUG|-CA- AU-UU-GU-- --------U- -U-g-uau-- u------GAA GUAU------ 4501 G-CAU(GUGA -)GUGUGUA- UUG|A-AGA| A--ACAAAU- GAGC-CGA-U CUUGGA|GG- 4561 CAGUAACAAU -AU------- -(auuug--- ---------- ---------- ---------- 4621 --)------- |uauaGAUAU UAGAC|UAGG GUU|uucaau ------(-ua cu-)--|-au 4681 ugaaGUGAAU |-CGG-aguu augu------ -------<-- ------(--- ----)----- 4741 ---------- ---------- ---(------ -------)-- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 -----u-aaa aacAA-AG-A AGA(UUAAUA AU-)UCUUC| -AU----uuu ac-uacg-a- 4981 --[------- ---------- ---------- ---------- -c---aag(- -gcga--)cu 5041 ua-------- ---------- ---------- ---------- ---------] ------auua 5101 ugac-----g gu----auau uu-u--uug- -ca-uaa-(g aaaaaugaa) -uuaug-|ug 5161 a-uguuu--- ---------- ---|---agc uaug--gauu ----gu(cau g--)auaag- 5221 aa-au-agc- u--------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------( --------)- ---------- -------uuu -uauau--au gcc--ugaua 5401 aaa-aaga-- -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ---------- ---------- ---------- --cg-uag-- ug-aauCCGU 5581 A|CC---uau aCC(GCAUCA )GG|UGU-CA AUGUU(uaca -)AACAaa-| uauu--||u- 5641 ua-a--aaua ac-GUAA-GU A-AGGGAAUU CGGCAA-AUU -AGAUCUGUA AC(UUUG)GG 5701 AUAAAGAUU| GGCUCUAG-- ---------- --------<- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 -------(-- ----)----- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 -(cau-g)-- ---------- ----->---- --------CU AGAACU|u(- --uua)cuau 6601 gu-aAGGAAU C|-UGACUGU UU(AUUAA)A AACAUAGCUU uuu-|----- -|-gu(---- 6661 auuu)ac--- ---------- ---------- aagAAGUG-- AAUUCUGCCC AGU|GCAUUU 6721 AU-UGUUAA- ---------- ---a(guug) u--------- ----guaaGC G|AAUGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-U( 6841 UAAUU)GGUG AC|GCGCAUG AAUGGAGCAA CGAGAUUCCU ACUGU-CCCU ACUUACAAUU 6901 UU|GUGAAAC C|ACGAAACA AG(GGAA-CG GG)CUUGUUA -U-AAAuCAG CGAGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC CUU-|AGUAU G---ucc-ua |AUGAAUAUU CGAUAUAu-u 7021 guagcg-aGG UGGGA----- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -gga-)---- 7141 ---------- ----aagugu ga-aaCCACU |AGUAUAUU- -UGAAU-AUU UGUUUAc--- 7201 ---------- ---------| --<------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- -(------)- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- ---------- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- -------->- --aau-ggau a-UAUG-GGG AG-UUUGGCU G(GGG)CGGU 7561 A-C|AGCUGU (UAAAAAGUA AC-)ACAG-C U|G|U|CCU- AAGGU-AGAU |GAAUG-AUG 7621 -G(AUG---- GUAA)CCAUC AGUUUA|UU( A|U--AAGG) GAAUAAA-UC U-GCUUUACU 7681 -UUAUAUA(g a--ugag--- )UAUAUUUAG UAGG(-GAAA )CCUUGG|CC --UUG|CGA- 7741 UCCCAAUU-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---a-cau(- ---uc-a--u u---)----- ---------- 7861 -----aug|u -AUUGG-gug uu|ugA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUA 7921 GCAGGCAAGC G(AUCAU)AG CGACUCUGCU UUUUGAUUCU UCGAUGUC|G UC-U|C|UUC 7981 UG|AACA|UC G-UAGUG(UA -UA-)UUUGA CGAA-GUGU| UGGAU(UGUU C)ACCCGgua 8041 augGGAAACG UGAGCUAGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GUaa---<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->----- gu-au-uu-u ugagUGAACU UUGA(UAGUA 8281 C(GAGA)GGA AC-)UCUAAG U|GAUGACCA Cuggu-agug cga|-uuaac u(auua)agu 8341 uau-guugcu u-agcuac-- gu-cguu--u cgauUAAGGC U(GAAAGCCU CUU-A)AGCC 8401 UGaagcgu-a gcuc-----a aaga--uaca u --|------- ---------- 8701 ----gaauga |aggug(uau gccga)ca-u uuug--aggu uac|ugcuuu uuauguguug 8761 gaguagguua au----(uuu aau------- ---------- ---------- ---------- 8821 ----)----a uuguaa---g uu-|ugauuu a|uuc--uua u--uua-gua au--uuu-ga 8881 uua--|---- ------|uaa uuuguuuauu agugag~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Nos.apis.2 9262 bp RNA RNA 27-MAR-1998 DEFINITION Nosema apis.; . ACCESSION U97150 KEYWORDS . SOURCE Nosema apis. ORGANISM Nosema apis. REFERENCE 1 (bases 1 to 4864) AUTHORS Gatehouse,H.S. and Malone,L.A. TITLE DNA Sequence for Small and Large Subunit rRNA Genes and Evidence of a Large Tandem Repeat Unit Size The Ribosomal RNA Gene Region of Nosema apis (Microspora): JOURNAL J. Invertebr. Pathol. 71, 97-105 (1998) STANDARD No information REFERENCE 2 (bases 1 to 4864) AUTHORS Gatehouse,H.S. TITLE Direct Submission JOURNAL Submitted (10-APR-1997) Horticulture and Food Research Institute of New Zealand Limited, Palmerston North Research Centre, Private Bag 11030, Palmerston North, New Zealand STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U97150 BASE COUNT 814 a 335 c 552 g 780 t 6781 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~uuuGCC CACACAUGGG AUC|AAUAGG 61 |GUACCAU|A A|-CGAGGAA GAU|CGUA(- -GCGG-AA)U |AC-GAAAg- -------|[- 121 ---------- ---------- ---------- ---------- ---------- -------]-- 181 ---------- ---------- -----auu|A UUGAUC-GAA U---(----- )----|---- 241 ---------- -(-------- ---------- ---------- ---------- ---)------ 301 ---------- ---------- --------au auua--(--- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ------aua- )--uaaua-- ---------- --G----AUU 481 AC|CCUUUGA -A--CU|UA( AGCA)UA-UC AUUAAA-A-G G-AGGAGA-- --AGAAACU( 541 AAC-U)AG-G AU|UUCUUUA GU---AGC(A GCGA)GUG-A A-----CAAG AAAC------ 601 ---------- ---------- ---------- ---------- -AACCCU|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ------(--- ---)------ ---------- ---------- ---------- ---------- 841 ---------- ---------- --------ug auuguaau-- --------cc -uua--ugga 901 gcuguaaa-- --u-cau-a( u-(auuuua- )u)uucuua- ---------- ------u-UU 961 --|C(GUA)G |AGGA-(UGU -AUA)-UCCG UU|--auaaa ugagauauau a-----aaag 1021 uaauu----- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGGGCU GCU(----UG 1141 GUAG)UGCAG UUUGAA---U AUAGGU-A(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 G-AAUGAGA- ---------- ---------- ---------- )UAU-CUAAG GUU----AAA 1381 UA-------- ---------- -UAAU-GGUA CACCGAUAGC AAAU-AAGUA CU(GCGA)A- 1441 G-GGACUU-- ---------- ---(------ )--------- ---------- G-UGAAAA-U 1501 GUGUU-GGU< ua--uag-cc uua------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- (uu-uu)--- -----uaagg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGAU UAUAAUUAUA GCGAgaua-- ac-------( -------aau 2641 --)------- ---------- -------gu- ---------- ---agucguu au(uagc)uu 2701 g-[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------a 2881 u--------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ---------- ----)----- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---(------ -)-------- ---------- -]-------- ---------- -AAGUUAUA- 3181 -AUU-AUAAG ACCCGAAACA C-AGUG-AAC UAUA-CAUG- UU|C-UGGUU GAAGAUAAGC 3241 (AACA----- -----)GUUU AUU-GGAAGA CCA-ua---A UC-AUUCUGA (CGUGCAAA) 3301 UCG-A-UGAU UUAAGAUGUG UAUAGUG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CC AAU-CGAACU GUGUGGUAGC UGGUUCACAG CGAAAUGUCU --(CUCA)GG 3421 ACAGC-AGUC -AU-uuu|uu a|-----gga ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ------caua -g|aug--ua gg-ac-acug ---------- ------uuau acua--(uuu 3721 a--)--uagu a-uga-|g-- -------aaa uuacg-aauu |cuaugga-a -cauuguaa- 3781 au--uaa-gu uua---cgau gugu------ ---------- ---------- ---------- 3841 ---------- ---------- --aucuaaga g|uA-UGACU -AGU-GGGCA -CAU-GAUU( 3901 G-UAAG)AAU GAU-GUGC-A AAAAGG(GA- UGAA)CCU-- UAUGAAA--- CAUUAAA--U 3961 A|UUcu-a-A --Au-AG-UA Gacac----- --------ua uaccau---- -AAAUAUGAU 4021 G--AAUACAU UGAGACA-GU AGGGCGGUUG UU(AUGG-AA GUA)GAAAUC CG|C(UAA)G 4081 |AAACGU(GU UACA)AC|-- -GUACCUACC -GAAUGUAUU AUU|GU-AUA AAA--UGGAA 4141 G--AAG-Au- ua-CUACUU| U|-------- --UAUgag-- --AUGUUUC| (- -agu-)---- -auuc-AGGU AGCU------ 4441 --GUG|-CA- AU-UU-GU-- --------U- -U-g-uau-- u------GAA GUAU------ 4501 G-CAU(GUGA -)GUGUGUA- UUG|A-AGA| A--ACAAAU- GAGC-CGA-U CUUGGA|GG- 4561 CAGUAACAAU -AU------- -(auuug--- ---------- ---------- ---------- 4621 --)------- |uauaGAUAU UAGAC|UAGG GUU|uucaau ------(-ua cu-)--|-au 4681 ugaaGUGAAU |-CGG-aguu augu------ -------<-- ------(--- ----)----- 4741 ---------- ---------- ---(------ -------)-- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 -----u-aaa aacAA-AG-A AGA(UUAAUA AU-)UCUUC| -AU----uuu ac-uacg-a- 4981 --[------- ---------- ---------- ---------- -c---aag(- -gcga--)cu 5041 ua-------- ---------- ---------- ---------- ---------] ------auua 5101 ugac-----g gu----auau uu-u--uug- -ca-uaa-(g aaaaaugaa) -uuaug-|ug 5161 a-uguuu--- ---------- ---|---agc uaug--gauu ----gu(cau g--)auaag- 5221 aa-au-agc- u--------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------( --------)- ---------- -------uuu -uauau--au gcc--ugaua 5401 aaa-aaga-- -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ---------- ---------- ---------- --ag-uag-- ug-aauCCGU 5581 A|CC---uau aCC(GCAUCA )GG|UGU-CA AUGUU(uaca -)AACAaa-| uauu--||u- 5641 ua-a--aaua ac-GUAA-GU A-AGGGAAUU CGGCAA-AUU -AGAUCUGUA AC(UUUG)GG 5701 AUAAAGAUU| GGCUCUAG-- ---------- --------<- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 -------(-- ----)----- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 -(cau-g)-- ---------- ----->---- --------CU AGAACU|u(- --uua)cuau 6601 gu-aAGGAAU C|-UGACUGU UU(AUUAA)A AACAUAGCUU uuu-|----- -|-gu(---- 6661 auuu)ac--- ---------- ---------- aagAAGUG-- AAUUCUGCCC AGU|GCAUUU 6721 AU-UGUUAA- ---------- ---a(guug) u--------- ----guaaGC G|AAUGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-U( 6841 UAAUU)GGUG AC|GCGCAUG AAUGGAGCAA CGAGAUUCCU ACUGU-CCCU ACUUACAAUU 6901 UU|GUGAAAC C|ACGAAACA AG(GGAA-CG GG)CUUGUUA -U-AAAuCAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UUU-|AGUAU G---ucc-ua |AUGAAUAUU CGAUAUAu-u 7021 guagcg-aGG UGGGA----- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -gga-)---- 7141 ---------- ----aagugu ga-aaCCACU |AGUAUAUU- -UGAAU-AUU UGUUUAc--- 7201 ---------- ---------| --<------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- -(------)- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- ---------- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- -------->- --aau-ggau a-UAUG-GGG AG-UUUGGCU G(GGG)CGGU 7561 A-C|AGCUGU (UAAAAAGUA AC-)ACAG-C U|G|U|CCU- AAGGU-AGAU |GAAUG-AUG 7621 -G(AUG---- GUAA)CCAUC AGUUUA|UU( A|U--AAGG) GAAUAAA-UC U-GCUUUACU 7681 -UUAUAUA(g a--ugag--- )UAUAUUUAG UAGG(-GAAA )CCUUGG|CC --UUG|CGA- 7741 UCCCAAUU-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---a-cau(- ---uc-a--u u---)----- ---------- 7861 -----aug|u -AUUGG-gug uu|ugA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUA 7921 GCAGGCAAGC G(AUCAU)AG CGACUCUGCU UUUUGAUUCU UCGAUGUC|G UC-U|C|UUC 7981 UG|AUCA|UC G-UAGUG(UA -UA-)UUUUA CGAA-GUGU| UGGAU(UGUU C)ACCCGgua 8041 augAGGAACG UGAGAUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GUga---<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->----- gu-au-au-u ugagUGAACU UUGA(UAGUA 8281 C(GAGA)GGA AC-)UCUAAG U|GAUGACCA Cuggu-ggug cga|-uuaac u(auuc)agu 8341 uau-guugcu u-agcuac-- gu-cauu--u cgauUAAGGC U(GAAAGCCU CUU-A)AGCC 8401 UGaagcgu-a gcuc-----a aaua--uaua a --|------- ---------- 8701 ----ggauga |aggug(uau accga)ca-u cuug--aggu uac|ugcuuu u-auaacuua 8761 gaguagguuu gguaua~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Nos.distri 9262 bp RNA RNA 11-JAN-191 DEFINITION Nosema distriae. ACCESSION No information KEYWORDS No information. SOURCE Nosema distriae. ORGANISM Nosema distriae. REFERENCE 1 (bases 1 to 4864) AUTHORS Baker,M.D., Vossbrinck,C.R., Maddox,J.V. and Undeen,A.H. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L28963 LOCUS NMERRLSC 248 bp rRNA RNA 08-AUG-1995 DEFINITION Nosema distriae ribosomal RNA large subunit. ACCESSION L28963 KEYWORDS ribosomal RNA large subunit. SOURCE Nosema distriae spore rRNA. ORGANISM Nosema distriae Eukaryotae; Microsporidia; Microsporea; Microsporida; Apansporoblastina; Nosematidae; Nosema. REFERENCE 1 (bases 1 to 248) AUTHORS Baker,M.D., Vossbrinck,C.R., Maddox,J.V. and Undeen,A.H. TITLE Phylogenetic relationships among Vairimorpha and Nosema species (Microspora) based on ribosomal RNA sequence data JOURNAL J. Invertebr. Pathol. 64 (2), 100-106 (1994) MEDLINE 95052762 COMMENT NCBI gi: 940259 FEATURES Location/Qualifiers source 1..248 /organism="Nosema distriae" /dev_stage="spore" /sequenced_mol="rRNA" rRNA 1..248 /partial /note="large subunit; putative" BASE COUNT 100 a 21 c 45 g 73 t 9 others ORIGIN BASE COUNT 100 a 21 c 45 g 73 t 9023 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~a g-----aaag aacu------ 601 ---------- ---------- ---------- ---------- -cauuau|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------g 781 un-aucuaua uu--cauunu ag-------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- --------ag 901 auguuaaa-- --a-guu-a- u-(uguuguc )a-uuc-a-- ---------- --------aa 961 u-|c(aua)g |auaca(uua aauu)-guag ua|--aauga ugacgauaaa ua----aaca 1021 augun----- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-aCGAUU GCU(----UG 1141 GUAG)UGCAA UUGGAA---U AUAGAU-A(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 g-aauaaaa- ---------- ---------- ---------- )UAU-CUAAA GUU----AAA 1381 UA-------- ---------- -UAAauGACA UACCGAUAGA GAAU-AAGNA CU(GCGA)A- 1441 G-GAAC---- ---------- ---(------ )--------- --------uu g-UGAAAA-U 1501 GGNAG-nnu< ua--gcuuan agna~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~(~-~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~]~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 3361 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Nos.pyraus 9262 bp RNA RNA 11-JAN-191 DEFINITION Nosema pyrausta. ACCESSION No information KEYWORDS No information. SOURCE Nosema pyrausta. ORGANISM Nosema pyrausta. REFERENCE 1 (bases 1 to 4864) AUTHORS Baker,M.D., Vossbrinck,C.R., Maddox,J.V. and Undeen,A.H. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L28968 LOCUS NMERRLSH 222 bp rRNA RNA 08-AUG-1995 DEFINITION Nosema pyrausta ribosomal RNA large subunit. ACCESSION L28968 KEYWORDS ribosomal RNA large subunit. SOURCE Nosema pyrausta spore rRNA. ORGANISM Nosema pyrausta Eukaryotae; Microsporidia; Microsporea; Microsporida; Apansporoblastina; Nosematidae; Nosema. REFERENCE 1 (bases 1 to 222) AUTHORS Baker,M.D., Vossbrinck,C.R., Maddox,J.V. and Undeen,A.H. TITLE Phylogenetic relationships among Vairimorpha and Nosema species (Microspora) based on ribosomal RNA sequence data JOURNAL J. Invertebr. Pathol. 64 (2), 100-106 (1994) MEDLINE 95052762 COMMENT NCBI gi: 940264 FEATURES Location/Qualifiers source 1..222 /organism="Nosema pyrausta" /dev_stage="spore" /sequenced_mol="rRNA" rRNA 1..222 /partial /note="large subunit; putative" BASE COUNT 84 a 22 c 42 g 71 t 3 others ORIGIN BASE COUNT 84 a 22 c 42 g 70 t 9044 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~(~~u u---)cauua uag------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- --------ag 901 auguucaa-- --a-guu-a- u-(uguuguc )a-uuc-c-- ---------- --------aa 961 u-|c(aua)g |nuaca(uuc aauu)-guag ua|--aauga ugacgauaaa ua----aacc 1021 augua----- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-aCGAUU GCU(----UG 1141 GUAG)UGCNA UUGGAA---U AUAGAU-A(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 g-aaunaaa- ---------- ---------- ---------- )UAU-CUAAA GUU----AAA 1381 UA-------- ---------- -UAAauGACA UACCGAUAGA GAAU-AAGUA CU(GCGA)A- 1441 G-GAAC---- ---------- ---(------ )--------- --------uu g-UGAAAA-U 1501 G-GUA-gua- uu--agcuua uagu~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~(~-~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~]~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 3361 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS E.cuniculi 9262 bp RNA RNA 17-AUG-1998 DEFINITION Encephalitozoon cuniculi.; 16S ribosomal RNA; 16S rRNA gene; 23S ribosomal RNA; 23S rRNA gene; 5.8S ribosomal RNA; 5.8S rRNA gene; IGS; intergenic spacer; internal transcribed spacer 1; ITS1; large subunit; small subunit. ACCESSION AJ005581 KEYWORDS 16S ribosomal RNA; 16S rRNA gene; 23S ribosomal RNA; 23S rRNA gene; 5.8S ribosomal RNA; 5.8S rRNA gene; IGS; intergenic spacer; internal transcribed spacer 1; ITS1; large subunit; small subunit. SOURCE Encephalitozoon cuniculi. ORGANISM Encephalitozoon cuniculi. REFERENCE 1 (bases 1 to 8871) AUTHORS ,G., Gouy,M., Michot,B. and Vivares,C.P. Peyretaillade,E., Biderre,C., Peyret,P., Duffieux,F., Metenier TITLE genes and a LSU rRNA reduced to the universal core Microsporidian Encephalitozoon cuniculi, a unicellular eukaryote, with a unusual chromosomal dispersion of ribosomal JOURNAL Nucleic Acids Res. 26, 3513-3520 (1998) STANDARD No information REFERENCE 2 (bases 1 to 8871) AUTHORS Peyretaillade,E. TITLE Direct Submission JOURNAL Submitted (16-APR-1998) Peyretaillade E., LBCP UPESA CNRS 6023, Laboratoire de Protistologie Mol. et Cell., Universite Blaise Pascal Clermont Ferrand II, 63177 Aubiere cedex, FRANCE STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AJ005581 BASE COUNT 551 a 469 c 868 g 618 t 6756 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~GUUUCUC UGUUCACGGG AUu|GAUUGG 61 |CAUUAGC|G G|-CGAUGAA GGA|CGUG(- -CAGG-AG)G |AC-GAUAug c-guug-|[- 121 uuguug---- ---------- ---------- ---------- ---------- -------]-- 181 ---------- ---------- ---ugac-|g gugucu-gaa uu--(----- )----|---- 241 ---------- -(-------- ---------- ---------- ---------- ---)------ 301 ---------- ---------- --------gu gugc--(--- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ------ggu- )--gugcac- ---------- --G----GGG 481 AC|CCCUUGG -A--CU|UA( AGCA)UA-UC AGUAAA-G-G G-AGGAGA-- --AGAAACC( 541 AAA-U)GG-G AU|UGCCUGA GU---AGC(G GCGA)GUG-A A-----AUGG CAUG------ 601 ---------- ---------- ---------- ---------- -AGCCUG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ugugguaacu gc-guuuggc g--------- ---------- ---------- ---------- 841 ---------- -gg------- ---------- ---uugug-- --------uu ugugg-cagc 901 agcggcga-- --g-ugc-g( a-(uugaaa- )u)cgg-a-- ---------- --------ug 961 --|C(GGA)G |AGGG-(CGA UGUG)-CCUG UA|-ggcgcg gcggcuuuuu u-----ugu- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGUGUU GCU(----UG 1141 GUAG)UGCAG CGCGAA---u g-CGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 G-UGGAUG-- ---------- ---------- ---------- )CAC-CGAAG GCU----AAA 1381 UA-------- ---------- -UGGC-UGAU GACCGAUAGC GGAU-AAGUA GA(GUGA)U- 1441 U-GAAGU--- ---------- ---(------ )--------- ---------- G-UGAAAA-G 1501 GAGGA-uga< ug----agaa augaaaguga auggagugaa ugggggaugu uccc------ 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- >------GCC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGAC GACGGCAGGA UUGU------ uuucc----( -------gag 2641 a-)------- ---------- ---g-ggga- ---------- ---------- ---------- 2701 --[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- -]-------- ---------- -UGGAUGCU- 3181 -GCG-GUCGG ACCCGAAAGA U-GGUG-AGC UAUG-UGUG- UG|U-UGAUU GAAGGGAUGC 3241 (GAAA----- -----)GUGU UCU-GGAGGA UCU-AA---G CC-GUUCUGA (CGUGCAAC) 3301 UCG-A-UGGC AUGACAUGUG CAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CC AAA-CGAACC AUCUGGUAGC UGGUUCCCUC UGAAAUGUCU --(CUCA)GG 3421 ACAGC-ggcg -ac----|-- -|-------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ------gggg -a|gug--u- aa-gauguug uaaagca--- ---------- cuaa--(ugc 3721 gc-)--uugc g-----|--- -----uuaaa cuuugaagau |gucuuu--- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- -----uaagu g|ug-uugcc -AGU-GGGCA -UAC-UGUG( 3901 G-UAAG)CAU GGU-GUGC-G AGAAGG(GA- UGAA)CCU-- UUAAGCG--- GGCUAag--g 3961 a|gucuuaug --c--aa-gg uga------- ---------- ----gu---- -GAAUCCGGC 4021 G--GCCUGAU UUUGACA-GU UGGACGGUGG CC(AUGG-AG GUU)GGCAUC CG|C(UAA)G 4081 |AAACGU(GU UGCA)AC|-- -GUACCUACC -GAAUUGGGC GGC|GG-AGA AAA--UGGAA 4141 G---gg-au- u--gaauug| c|-------- --auuccg-- --augccug| (- ggagu)---- -aucu-GAGU AAGG------ 4441 --GGG|-CG- GU-AU-CG-- --------u- -u-c-ugc-- u------GAA GGUC------ 4501 C-UGC(GUGA -)GCGGGGG- UGG|A-GGG| G--CGAUAU- GUGC-AGA-U CUUGGU|AG- 4561 CAGUAACAA- -ggaaaug-- -(auuug--- ---------- ---------- ---------- 4621 --)--cg--- |cugu----- G-GAC|GAGG GUU|cccug- ------(-ug ugg)--|--c 4681 agggGUGAAU |-cga-cugu ggau------ -------<-- ------(--- ----)----- 4741 ---------- ---------- ---(------ -------)-- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ---------- acGGA-GG-U GCA(UUGAUA GU-)UGUGU| -GU----auu gc-ggcu-g- 4981 --[------- ---------- ---------- ---------- -g---gag(- -gcga--)cu 5041 ug-------- ---------- ---------- ---------- ---------] ------gcug 5101 ugac-----g ga----uggg gg-c-ggccc ugu-ccag(g auagcagaa) cuggaug|-- 5161 --cuguc--- ---------- ---|---ugc ugcg--gauu ----gu(uau g--)augcg- 5221 aa-gc-agc- g--------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------( --------)- ------a--u uguggg---c -gagcc--ug uuc--cgaug 5401 aaa-aaga-- -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ---------- ---------- ---------- --gg-cug-- cu-uugUCGU 5581 A|CC---uag aCC(GCAUCU )GG|UGU-CC ACUGU(UUGC C)GCGGaa-| GUGU--||u- 5641 uu-g--ugcA ag-GGCC-GU A-AGGGAAGU CGGCAA-GAU -UGAUGUGUA AC(UUCG)GG 5701 AGAAGGAUU| GGCUCUAG-- ---------- --------<- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 ---------- ---------- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 -(cgu-g)-- ---------- ----->---- --------CU AGAACU|g(- --uuu)-guu 6601 gu-gGGGAAU C|-UGACUGU UU(ACUAA)A AACAUAGCUU ugu-|----- -|-gu(---- 6661 gugg)ac--- ---------- ---------- gcaAAGUG-- AAUUCUGCCC AGU|GCACUU 6721 UU-AGUUA-- -----cggcc -----ugug- -----uggg- ----cuaaGC G|AGUGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-G( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAGCAA CGAGAUUCCC ACUGU-CCCU ACGGCCUGUC 6901 UU|GUGAACC U|aca-gCCA AG(GGAA-CG GG)CUUGGGC -U-GAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGCAU G---ugu-ga |AGUGCUGGG UGUGGGca-u 7021 gcagcg-aGG UGGGga---- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -----)---- 7141 ---------- ---ugagugc ga-uaCCACU |AUGUCUUC- -CGCCC-AGU GCUUUG---- 7201 ---------- ---------| --<------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- ---------- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- -------->- --ugg-augg a-UGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|GACUGC (UAAAGACUA AC-)GCAG-A C|G|U|CCU- AAGGC-GGGC |UCAGC-GGG 7621 -G(AAG---- GAAA)CCACG CGUGGA|GC( A|C--AAGG) GCACAAG-CC U-GCUUGAGA 7681 -CUGUUCC(u a--u-ugc-- )GGGACUGUU UGGG(gGAAA )CCCUGG|CC --UAG|AGA- 7741 UCCCAUGU-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --cc-uau(- ---ug-u--g c---)----- ---------- 7861 ----gugg|g ACAUGG-gug aC|aGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUA 7921 GCAGCCGAGC G(ACCAU)AG CGACGCUGCU UUUUGAUUCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UC G-CGAAG(CA -GA-)GAUUG CGAA-GUGU| UGGAU(UGUU C)ACCCAcca 8041 acaGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GUGU---<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->----- gg-ac-ug-u gcagCAGAUC UUGA(UAGUA 8281 C(GAGA)GGA AC-)UCUUGA U|UGCGACCU Cuggu-ggag cgg|-cgugc c(ugcu)ggc 8341 --u-gcugcg g-agcuac-- gu-cggg--a guauaauGGC U(GAAGGCCU C-U-A)AGCC 8401 UGaagacc-g acugc----- gcgg--ugug u<-------- ---------- ---------- 8461 ---------- ---------- ---------- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- -guggcggaa 8641 gacgaccgcu gu-gug-ugc a-agcu-gug c--------> --|------- ---------- 8701 ----ggaugg |aggag(gau uccga)ca-u uuug--aggc ugu|gcauuu gcgcgagugu 8761 guguggagag cucuua(uug cac------- ---------- ---------- ---------- 8821 ----)----u gugucu---u cug|-ccccu u|cugcuu~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS E.hellem 9262 bp RNA RNA 11-JAN-191 DEFINITION Encephalitozoon hellem. ACCESSION No information KEYWORDS No information. SOURCE Encephalitozoon hellem. ORGANISM Encephalitozoon hellem. REFERENCE 1 (bases 1 to 8871) AUTHORS Vossbrinck,C.R., Baker,M.D., Didier,E.S., DeBrunner-Vossbrinck,B.A. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L13331 LOCUS EZORGDNA 724 bp DNA INV 02-AUG-1993 DEFINITION Encephalitozoon hellem small ribosomal RNA, 3'end; non-transcribed spacer; large ribosomal RNA, 5'end. ACCESSION L13331 KEYWORDS large ribosomal RNA; nontranscribed spacer; small ribosomal RNA. SOURCE Encephalitozoon hellem DNA. ORGANISM Encephalitozoon hellem Eukaryota; Animalia; Protozoa; Microspora; Haplophasea; Glugeida; Encephalitozoonidae. REFERENCE 1 (bases 1 to 724) AUTHORS Vossbrinck,C.R., Baker,M.D., Didier,E.S., DeBrunner-Vossbrinck,B.A. and Shadduck,J.A. TITLE Ribosomal DNA sequences of Encephalitozoon hellem and Encephalitozoon cuniculi: species identification and phylogenetic construction JOURNAL J. Eukaryot. Microbiol. 40, 354-362 (1993) MEDLINE 93284247 COMMENT NCBI gi: 290700 FEATURES Location/Qualifiers source 1..724 /organism="Encephalitozoon hellem" /cell_type="spore" /sequenced_mol="DNA" rRNA <1..219 /standard_name="small subunit ribosomal RNA" misc_feature 220..265 /standard_name="non-trascribed spacer" rRNA 266..>724 /standard_name="large subunit ribosomal RNA" BASE COUNT 184 a 91 c 215 g 233 t 1 others ORIGIN BASE COUNT 119 a 51 c 146 g 142 t 8804 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~UUUCUC UAUCCAUGGG AUU|GAUUGG 61 |CAUUAUC|U G|-CGAUGAA GGA|cgug(- -cugg-ag)g |ac-gauaug c-cguu-|[- 121 uuuuuu---- ---------- ---------- ---------- ---------- -------]-- 181 ---------- ---------- ---agcg-|g augucu-gaa uu--(----- )----|---- 241 ---------- -(-------- ---------- ---------- ---------- ---)------ 301 ---------- ---------- --------ag gugu--(--- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -----uugu- )--gcgccu- ---------- --G----UGG 481 AC|CCCUUUG -A--CU|UA( AGCA)UA-UU ACUAAA-G-G G-AGGAGN-- --AGAAACU( 541 AAA-U)AG-G AU|UAUCUGA GU---AGC(G GCGA)GUG-A A-----AGGA UAUG------ 601 ---------- ---------- ---------- ---------- -AGCCUG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ugugguaauc ac-gugugug a--------- ---------- ---------- ---------- 841 ---------- guu------- ---------- ---gugaa-- --------uu aggau-gacg 901 augcugaggc --a-cgg-a( u-(ugga--- )a)ucugu-- ---------- -------uuu 961 --|c(uua)g |gggg-(uga uagg)-ccug ua|--agugu ugucuuu-uu u-----ugug 1021 au-------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGGGUU GUU(----UG 1141 GUAG)UGCAG CCUGAA---U GUGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 G-UAUGUG-- ---------- ---------- ---------- )CAU-CCAAG GCU----AAA 1381 UA-------- ---------- UGUGA-UGAU GACCGAUAGC GAAU-AAGUA GA(GUGA)U- 1441 U-GAAG---- ---------- ---(------ )--------- ---------u g-ugaaaa-g 1501 auuaa-uga< ug---agaaa ugaaaaugga uugaguga-g auggg~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~(~-~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~]~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 3361 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Vai.ephist 9262 bp RNA RNA 11-JAN-191 DEFINITION Vairimorpha ephistiae. ACCESSION No information KEYWORDS No information. SOURCE Vairimorpha ephistiae. ORGANISM Vairimorpha ephistiae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L28972 LOCUS VAIRRLSC 267 bp rRNA RNA 09-AUG-1995 DEFINITION Vairimorpha ephistiae ribosomal RNA large subunit. ACCESSION L28972 KEYWORDS ribosomal RNA large subunit. SOURCE Vairimorpha ephistiae spore rRNA. ORGANISM Vairimorpha ephistiae Eukaryotae; Microsporidia; Microsporea; Microsporida; Pansporablastina; Burenellidae; Vairimorpha. REFERENCE 1 (bases 1 to 267) AUTHORS Baker,M.D., Vossbrinck,C.R., Maddox,J.V. and Undeen,A.H. TITLE Phylogenetic relationships among Vairimorpha and Nosema species (Microspora) based on ribosomal RNA sequence data JOURNAL J. Invertebr. Pathol. 64 (2), 100-106 (1994) MEDLINE 95052762 COMMENT NCBI gi: 940321 FEATURES Location/Qualifiers source 1..267 /organism="Vairimorpha ephistiae" /dev_stage="spore" /sequenced_mol="rRNA" rRNA 1..267 /partial /note="large subunit; putative" BASE COUNT 92 a 25 c 54 g 93 t 3 others ORIGIN BASE COUNT 92 a 25 c 54 g 92 t 8999 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~u|uucuuua gu---agc(a gcga)gug-a a-----caag aaau------ 601 ---------- ---------- ---------- ---------- -aacccu|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------c 781 ca-uug(uaa uccu)uaauu gg-------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- --------ag 901 -uuguaaa-- --u-ggu-u- u-(auucua- )u-uuauua- ---------- --------ua 961 uu|u(aua)g |agaa-(uau uaua)-uucg uu|--auua- auagaauaga au----aaug 1021 uc-uu----- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-aGAGCU GCU(----UG 1141 GUAG)UGCAG UUUGAA---U AAAGGU-A(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 g-aaugaaa- ---------- ---------- ---------- )UAU-CUAAG GUU----AAA 1381 UA-------- ---------- -UAAu-GGUA UACCGAUAGA AAAU-AAGUA CU(GCGA)A- 1441 G-GAAC---- ---------- ---(------ )--------- --------uu g-UGAAAA-U 1501 GUGUG-gng- uu--uagccn nauu~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~(~-~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~]~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 3361 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Vai.hetero 9262 bp RNA RNA 11-JAN-191 DEFINITION Vairimorpha heterosporum. ACCESSION No information KEYWORDS No information. SOURCE Vairimorpha heterosporum. ORGANISM Vairimorpha heterosporum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L28973 LOCUS VAIRRLSD 338 bp rRNA RNA 09-AUG-1995 DEFINITION Vairimorpha heterosporum ribosomal RNA large subunit. ACCESSION L28973 KEYWORDS ribosomal RNA large subunit. SOURCE Vairimorpha heterosporum spore rRNA. ORGANISM Vairimorpha heterosporum Eukaryotae; Microsporidia; Microsporea; Microsporida; Pansporablastina; Burenellidae; Vairimorpha. REFERENCE 1 (bases 1 to 338) AUTHORS Baker,M.D., Vossbrinck,C.R., Maddox,J.V. and Undeen,A.H. TITLE Phylogenetic relationships among Vairimorpha and Nosema species (Microspora) based on ribosomal RNA sequence data JOURNAL J. Invertebr. Pathol. 64 (2), 100-106 (1994) MEDLINE 95052762 COMMENT NCBI gi: 940322 FEATURES Location/Qualifiers source 1..338 /organism="Vairimorpha heterosporum" /dev_stage="spore" /sequenced_mol="rRNA" rRNA 1..338 /partial /note="large subunit; putative" BASE COUNT 123 a 33 c 67 g 114 t 1 others ORIGIN BASE COUNT 123 a 33 c 67 g 113 t 8926 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~uu--(--- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ------uau- )--aauguau u--------- --ga---uaa 481 cc|cuuugaa -c--au|ua( agcg)ua-uc guuaaa-a-g g-aggaaa-- --agaaacu( 541 aac-u)ag-g au|uucuuua gu---agc(a gcga)gug-a a-----caag aaau------ 601 ---------- ---------- ---------- ---------- -aacccu|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------c 781 ca-uug(uaa uccu)uaauu gg-------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- --------ag 901 -uuguaaa-- --u-ggu-u- u-(auucua- )u-unauua- ---------- --------ua 961 uu|u(aua)g |agaa-(uau uaua)-uucg uu|--auua- auagaauaga au----aaug 1021 uacuu----- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-aGAGCU GCU(----UG 1141 GUAG)UGCAG UUUGAA---U AAAGGU-A(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 g-aaugaaa- ---------- ---------- ---------- )UAU-CUAAG GUU----AAA 1381 UA-------- ---------- -UAAu-GGUA UACCGAUAGA AAAU-AAGUA CU(GCGA)A- 1441 G-GAAC---- ---------- ---(------ )--------- --------uu g-UGAAAA-U 1501 GUGUG-gag- uu--uagccu uauu~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~(~-~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~]~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 3361 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Vai.lymant 9262 bp RNA RNA 11-JAN-191 DEFINITION Vairimorpha lymantriae. ACCESSION No information KEYWORDS No information. SOURCE Vairimorpha lymantriae. ORGANISM Vairimorpha lymantriae. REFERENCE 1 (bases 1 to 8871) AUTHORS Baker,M.D., Vossbrinck,C.R., Maddox,J.V. and Undeen,A.H. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L28974 LOCUS VAIRRLSE 339 bp rRNA RNA 09-AUG-1995 DEFINITION Vairimorpha lymantriae ribosomal RNA large subunit. ACCESSION L28974 KEYWORDS ribosomal RNA large subunit. SOURCE Vairimorpha lymantriae spore rRNA. ORGANISM Vairimorpha lymantriae Eukaryotae; Microsporidia; Microsporea; Microsporida; Pansporablastina; Burenellidae; Vairimorpha. REFERENCE 1 (bases 1 to 339) AUTHORS Baker,M.D., Vossbrinck,C.R., Maddox,J.V. and Undeen,A.H. TITLE Phylogenetic relationships among Vairimorpha and Nosema species (Microspora) based on ribosomal RNA sequence data JOURNAL J. Invertebr. Pathol. 64 (2), 100-106 (1994) MEDLINE 95052762 COMMENT NCBI gi: 940323 FEATURES Location/Qualifiers source 1..339 /organism="Vairimorpha lymantriae" /dev_stage="spore" /sequenced_mol="rRNA" rRNA 1..339 /partial /note="large subunit; putative" /product="Ribosomal RNA" BASE COUNT 117 a 36 c 63 g 116 t 7 others ORIGIN BASE COUNT 117 a 36 c 63 g 115 t 8931 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~aauauau uuau---aua uug----aua 481 uc|ccuuu-g -a--cu|ua( agca)ua-uc auuaaa-a-g g-aggaaa-- --agaaacu( 541 aac-u)ag-g au|uucuuua gu---agc(g gcga)gug-a a-----caag aauc------ 601 ---------- ---------- ---------- ---------- -aacccu|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------u 781 ga-uug(uaa uccu)uaaau gg-------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- --------ag 901 -auguaaa-- --u-cnu-u- u-(auucua- )u-uauuua- ---------- --------ua 961 u-|c(aua)g |agaa-(uuu uaaa)-uucg uu|--acuug auagaauaga au----nauu 1021 ucuuu----- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-aGGGCN NCU(----UG 1141 GUAG)UGCAG UUUGAA---U ACAGGU-A(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 g-aaugaga- ---------- ---------- ---------- )UAU-CUAAG GUU----AAA 1381 UA-------- ---------- -UAAu-GGUA UACCGAUAGC AAAU-AAGUA CU(GCGA)A- 1441 G-GAAU---- ---------- ---(------ )--------- --------uu g-UGAAAA-U 1501 GUGUN-nnu- gu--uagccu uauu~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~(~-~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~]~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 3361 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Vair.sp.SA 9262 bp RNA RNA 11-JAN-191 DEFINITION Vairimorpha sp.. ACCESSION No information KEYWORDS No information. SOURCE Vairimorpha sp. ORGANISM Vairimorpha sp. REFERENCE 1 (bases 1 to 8871) AUTHORS Baker,M.D., Vossbrinck,C.R., Maddox,J.V. and Undeen,A.H. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L28970 LOCUS VAIRRLSA 318 bp rRNA RNA 09-AUG-1995 DEFINITION Vairimorpha sp. ribosomal RNA large subunit. ACCESSION L28970 KEYWORDS ribosomal RNA large subunit. SOURCE Vairimorpha sp spore rRNA. ORGANISM Vairimorpha sp. Eukaryotae; Microsporidia; Microsporea; Microsporida; Pansporablastina; Burenellidae; Vairimorpha. REFERENCE 1 (bases 1 to 318) AUTHORS Baker,M.D., Vossbrinck,C.R., Maddox,J.V. and Undeen,A.H. TITLE Phylogenetic relationships among Vairimorpha and Nosema species (Microspora) based on ribosomal RNA sequence data JOURNAL J. Invertebr. Pathol. 64 (2), 100-106 (1994) MEDLINE 95052762 COMMENT NCBI gi: 940319 FEATURES Location/Qualifiers source 1..318 /organism="Vairimorpha sp." /dev_stage="spore" /sequenced_mol="rRNA" rRNA 1..318 /partial /note="large subunit; putative" BASE COUNT 111 a 36 c 61 g 101 t 9 others ORIGIN BASE COUNT 111 a 36 c 61 g 101 t 8953 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~c|ccuuuga -a--cu|ua( agca)ua-uc auuaaa-a-g g-aggaaa-- --agaaacu( 541 aac-u)ag-g au|uucuuua gu---agc(g gcga)gug-a a-----caag aauc------ 601 ---------- ---------- ---------- ---------- -aacccu|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------u 781 ga-uug(uaa uccu)uaaau gg-------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- --------ag 901 -auguaaa-- --u-cau-u- u-(auucua- )u-uauuua- ---------- --------ua 961 u-|c(aua)g |agaa-(uuu uaaa)-uucg uu|--acuug auagaauaga au----aauu 1021 ucuuu----- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-aGGGCN NCU(----UG 1141 GUAG)UGCAG UUUGAA---U ACAGGU-A(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 g-aaugaga- ---------- ---------- ---------- )UAU-CUAAG GUU----AAA 1381 UA-------- ---------- -UAAu-GGUA UACCGAUAGC AAAU-AAGUA CU(GCGA)A- 1441 G-GAAU---- ---------- ---(------ )--------- --------uu g-UGAAAA-U 1501 GUGNN-nnn- nu--uagccu nauu~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~(~-~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~]~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 3361 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Vair.sp.SB 9262 bp RNA RNA 11-JAN-191 DEFINITION Vairimorpha sp.. ACCESSION No information KEYWORDS No information. SOURCE Vairimorpha sp. ORGANISM Vairimorpha sp. REFERENCE 1 (bases 1 to 8871) AUTHORS Baker,M.D., Vossbrinck,C.R., Maddox,J.V. and Undeen,A.H. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L28971 LOCUS VAIRRLSB 337 bp rRNA RNA 09-AUG-1995 DEFINITION Vairimorpha sp. ribosomal RNA large subunit. ACCESSION L28971 KEYWORDS ribosomal RNA large subunit. SOURCE Vairimorpha sp spore rRNA. ORGANISM Vairimorpha sp. Eukaryotae; Microsporidia; Microsporea; Microsporida; Pansporablastina; Burenellidae; Vairimorpha. REFERENCE 1 (bases 1 to 337) AUTHORS Baker,M.D., Vossbrinck,C.R., Maddox,J.V. and Undeen,A.H. TITLE Phylogenetic relationships among Vairimorpha and Nosema species (Microspora) based on ribosomal RNA sequence data JOURNAL J. Invertebr. Pathol. 64 (2), 100-106 (1994) MEDLINE 95052762 COMMENT NCBI gi: 940320 FEATURES Location/Qualifiers source 1..337 /organism="Vairimorpha sp." /dev_stage="spore" /sequenced_mol="rRNA" rRNA 1..337 /partial /note="large subunit; putative" BASE COUNT 124 a 33 c 64 g 104 t 12 others ORIGIN BASE COUNT 124 a 33 c 64 g 104 t 8937 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~aauauau uuauaaugua uug----aua 481 ac|ccuuuga -a--cu|ua( agca)na-uc uuuaaa-a-g g-aggaaa-- --agaaacu( 541 nac-u)ng-g au|uucuuua gu---agc(a gcga)gug-a a-----caag aaau------ 601 ---------- ---------- ---------- ---------- -aacccu|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------c 781 ca-uug(uaa uccu)uaauu gg-------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- --------ag 901 -uugunaa-- --u-ggu-u- u-(auucun- )u-unauua- ---------- --------ua 961 uu|u(aua)g |agaa-(uau uaua)-uucg uu|--auua- auagaauaga au----aaug 1021 uacuu----- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-aGAGCU GCU(----UG 1141 GUAG)UGCAG UUUGAA---U AAAGGN-A(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 g-aangaaa- ---------- ---------- ---------- )UAU-CUAAG GUU----AAA 1381 UA-------- ---------- -UAAu-GGUA UACCGAUAGA AAAU-AAGUA CU(GCGA)A- 1441 G-GAAC---- ---------- ---(------ )--------- --------uu g-UGAAAA-U 1501 GNGAN-nag- ng--aagcc. ....~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~(~-~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~]~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 3361 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Vair.sp.SF 9262 bp RNA RNA 11-JAN-191 DEFINITION Vairimorpha necatrix. ACCESSION No information KEYWORDS No information. SOURCE Vairimorpha necatrix. ORGANISM Vairimorpha necatrix. REFERENCE 1 (bases 1 to 8871) AUTHORS Baker,M.D., Vossbrinck,C.R., Maddox,J.V. and Undeen,A.H. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L28975 LOCUS VAIRRLSF 341 bp rRNA RNA 09-AUG-1995 DEFINITION Vairimorpha necatrix ribosomal RNA large subunit. ACCESSION L28975 KEYWORDS ribosomal RNA large subunit. SOURCE Vairimorpha necatrix spore rRNA. ORGANISM Vairimorpha necatrix Eukaryotae; Microsporidia; Microsporea; Microsporida; Pansporablastina; Burenellidae; Vairimorpha. REFERENCE 1 (bases 1 to 341) AUTHORS Baker,M.D., Vossbrinck,C.R., Maddox,J.V. and Undeen,A.H. TITLE Phylogenetic relationships among Vairimorpha and Nosema species (Microspora) based on ribosomal RNA sequence data JOURNAL J. Invertebr. Pathol. 64 (2), 100-106 (1994) MEDLINE 95052762 COMMENT NCBI gi: 940324 FEATURES Location/Qualifiers source 1..341 /organism="Vairimorpha necatrix" /dev_stage="spore" /sequenced_mol="rRNA" rRNA 1..341 /partial /note="large subunit; putative" BASE COUNT 116 a 33 c 66 g 121 t 5 others ORIGIN BASE COUNT 116 a 33 c 66 g 120 t 8927 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~aauauau uuauaaugua uug----auu 481 ac|ccuuuga -a--cu|ua( agca)ua-uc uuunaa-a-g g-aggaaa-- ---gaaacu( 541 uac-u)ug-g au|uucuuua gu---agc(a gcga)gug-a a-----cuag aaau------ 601 ---------- ---------- ---------- ---------- -uacccu|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------c 781 cn-uug(uaa uccu)uaauu gg-------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- --------ag 901 -nuguaaa-- --u-ggu-u- u-(auucua- )u-unauuau ---------- -------uu- 961 --|u(aua)g |agaa-(uau uaua)-uucg uu|--auua- auagaauaga au----aaug 1021 uacuu----- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-aGAGCU GCU(----UG 1141 GUNG)UGCAG UUUGAA---U AAAGGU-A(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 g-aaugaaa- ---------- ---------- ---------- )UAU-CUAAG GUU----AAA 1381 UA-------- ---------- -UAAu-GGUA UACCGAUGGA AAAU-AAGUA CU(GCGA)A- 1441 G-GAAC---- ---------- ---(------ )--------- --------uu g-UGAAAA-U 1501 GUGUG-gag- uu--uagccu uauu~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~(~-~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~]~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 3361 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Vair.sp.SG 9262 bp RNA RNA 11-JAN-191 DEFINITION Vairimorpha sp.. ACCESSION No information KEYWORDS No information. SOURCE Vairimorpha sp. ORGANISM Vairimorpha sp. REFERENCE 1 (bases 1 to 8871) AUTHORS Baker,M.D., Vossbrinck,C.R., Maddox,J.V. and Undeen,A.H. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L28976 LOCUS VAIRRLSG 339 bp rRNA RNA 09-AUG-1995 DEFINITION Vairimorpha sp. ribosomal RNA large subunit. ACCESSION L28976 KEYWORDS ribosomal RNA large subunit. SOURCE Vairimorpha sp spore rRNA. ORGANISM Vairimorpha sp. Eukaryotae; Microsporidia; Microsporea; Microsporida; Pansporablastina; Burenellidae; Vairimorpha. REFERENCE 1 (bases 1 to 339) AUTHORS Baker,M.D., Vossbrinck,C.R., Maddox,J.V. and Undeen,A.H. TITLE Phylogenetic relationships among Vairimorpha and Nosema species (Microspora) based on ribosomal RNA sequence data JOURNAL J. Invertebr. Pathol. 64 (2), 100-106 (1994) MEDLINE 95052762 COMMENT NCBI gi: 940325 FEATURES Location/Qualifiers source 1..339 /organism="Vairimorpha sp." /dev_stage="spore" /sequenced_mol="rRNA" rRNA 1..339 /partial /note="large subunit; putative" BASE COUNT 120 a 36 c 67 g 115 t 1 others ORIGIN BASE COUNT 120 a 36 c 67 g 115 t 8924 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~aauauau uuau---aua uug----aua 481 ac|ccuuuga -a--cu|ua( agca)ua-uc auuaaa-a-g g-aggaaa-- --agaaacu( 541 aac-u)ag-g au|uucuuua gu---agc(g gcga)gug-a a-----caag aauc------ 601 ---------- ---------- ---------- ---------- -aacccu|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------u 781 ga-uug(uaa uccu)uaaau gg-------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- --------ag 901 -auguaaa-- --u-cau-u- u-(auucua- )u-uauuua- ---------- --------ua 961 u-|c(aua)g |agaa-(uuu uana)-uucg uu|--acuug auagaauaga au----aauu 1021 ucuuu----- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-aGGGCU GCU(----UG 1141 GUAG)UGCAG UUUGAA---U ACAGGU-A(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 g-aaugaga- ---------- ---------- ---------- )UAU-CUAAG GUU----AAA 1381 UA-------- ---------- -UAAu-GGUA UACCGAUAGC AAAU-AAGUA CU(GCGA)A- 1441 G-GAAU---- ---------- ---(------ )--------- --------uu g-UGAAAA-U 1501 GUGUG-ggu- gu--uagccu uauu~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~(~-~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~]~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 3361 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Vair.sp.SH 9262 bp RNA RNA 11-JAN-191 DEFINITION Vairimorpha sp. ACCESSION No information KEYWORDS No information. SOURCE Vairimorpha sp. ORGANISM Vairimorpha sp. REFERENCE 1 (bases 1 to 8871) AUTHORS Baker,M.D., Vossbrinck,C.R., Maddox,J.V. and Undeen,A.H. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L28977 LOCUS VAIRRLSH 232 bp rRNA RNA 09-AUG-1995 DEFINITION Vairimorpha sp. ribosomal RNA large subunit. ACCESSION L28977 KEYWORDS ribosomal RNA large subunit. SOURCE Vairimorpha sp spore rRNA. ORGANISM Vairimorpha sp. Eukaryotae; Microsporidia; Microsporea; Microsporida; Pansporablastina; Burenellidae; Vairimorpha. REFERENCE 1 (bases 1 to 232) AUTHORS Baker,M.D., Vossbrinck,C.R., Maddox,J.V. and Undeen,A.H. TITLE Phylogenetic relationships among Vairimorpha and Nosema species (Microspora) based on ribosomal RNA sequence data JOURNAL J. Invertebr. Pathol. 64 (2), 100-106 (1994) MEDLINE 95052762 COMMENT NCBI gi: 940326 FEATURES Location/Qualifiers source 1..232 /organism="Vairimorpha sp." /dev_stage="spore" /sequenced_mol="rRNA" rRNA 1..232 /partial /standard_name="large subunit rRNA; partial sequence" /note="putative" BASE COUNT 80 a 21 c 47 g 82 t 2 others ORIGIN BASE COUNT 80 a 21 c 47 g 82 t 9032 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~cccu|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------c 781 ca-uug(uaa uccu)uaauu gg-------- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- --------ng 901 -uuguaaa-- --u-ggu-u- u-(auucua- )u-uuauua- ---------- --------ua 961 uu|u(aua)g |agaa-(uau uaua)-uucg uu|--auua- auagaauaga au----aaug 1021 uacuu----- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-aGAGCU GCU(----UG 1141 GUAG)UGCAG UUUGAA---U AAAGGU-A(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 g-aaugaaa- ---------- ---------- ---------- )UAU-CUAAG GUU----AAA 1381 UA-------- ---------- -UAAu-GGUA UACCGAUAGA AAAU-AAGUA CU(GCGA)A- 1441 G-GAAC---- ---------- ---(------ )--------- --------uu g-UGAAAA-U 1501 GUGUG-gag- uu--uagccu na..~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~(~-~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~]~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 3361 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS A.michaeli 9262 bp RNA RNA 11-JAN-191 DEFINITION Ameson michaelis. ACCESSION No information KEYWORDS No information. SOURCE Ameson michaelis. ORGANISM Ameson michaelis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L20293 LOCUS AMXRRNA 468 bp ds-DNA INV 04-JAN-1994 DEFINITION Ameson michaelis large subunit ribosomal RNA gene sequence. ACCESSION L20293 KEYWORDS ribosomal RNA. SOURCE Ameson michaelis muscles DNA. ORGANISM Ameson michaelis Eukaryota; Animalia; Protozoa; Microspora; Microsporea; Microsporida; Pereziidae. REFERENCE 1 (bases 1 to 468) AUTHORS Zhu,X., Wittner,M., Tanowitz,H., Cali,A. and Weiss,L. TITLE Ribosomal DNA phylogeny of three microsporidia species: Enterocytozoon bieneusi, Septata intestinalis and Ameson michaelis JOURNAL Unpublished (1994) FEATURES Location/Qualifiers rRNA <36..>468 /standard_name="large subunit rRNA partial sequence" /label=LSU-rRNA misc_feature 1..35 /standard_name="intergenic spacer" /note="putative" source 1..468 /organism="Ameson michaelis" /sequenced_mol="DNA" /tissue_type="muscles" BASE COUNT 158 a 67 c 126 g 117 t ORIGIN BASE COUNT 147 a 65 c 117 g 104 t 8829 others ORIGIN 1 |--------- ---------- ---------- ---------- ---------- ---|------ 61 |-------|- -|-------- -----uca-a uuggu-uc-u |--------- --ucggu-u- 121 ga-------- ---------- --ga------ ---------- ---------- ----aaggau 181 gggcacaagg gaccacaauu ggucucuugg gagaaa-gga uggg-agagu acc-c-acaa 241 ugg------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------a uu-ugagugc aaacua-uga -gaauc---- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --------c- ---------- -gu-cucu-g aca----AGU 481 AC|UCCUUGA -A--UU|GA( AGCC)UC-UU AGUAAA-G-G A-AGGAAA-- --AGAAACU( 541 AAC-A)AG-G AU|ACCCGUA GU---AGU(- GCGA)ACG-A A-----CUGG AUAG------ 601 ---------- ---------- ---------- ---------- -AGUCUG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- -------cua uguaauccgc 841 aaggagau-- ---------- ---------- ---------- ---------g uuaag-gcug 901 caaaggaa-- --g-uca-g( u-(uggaau- )g)cug-c-- ---------- --------GA 961 --|A(AGA)U |AAGG-(UGA UAUC)-CCUU AC|-aaacgu uagaaaa--- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|a AGU-AGCCAU ACU(----UG 1141 GUAG)UGGAU GGUGAA---- -gcggu-g(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 guuuuuuc-- ---------- ---------- ---------- )cau-cgAAG ACU----AAA 1381 UA-------- ---------- -cagg-aaga gACCGAUAGC GAAU-AAGUA GA(GUGA)U- 1441 C-GAAA---- ---------- ---(------ )--------- --------GU G-ugaaau-u 1501 guaga-cuu- ac-auuauua u~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~--~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 2281 ~~~~~~~~~- -~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~(~-~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~]~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 3361 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~-~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~~ ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ -~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~-~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Micr.57864 9262 bp RNA RNA 29-DEC-1998 DEFINITION Microsporidium 57864.. ACCESSION No information KEYWORDS No information. SOURCE Microsporidium 57864. ORGANISM Microsporidium 57864. REFERENCE 1 (bases 1 to 8871) AUTHORS Rice,R.N. TITLE Direct Submission JOURNAL Submitted (25-FEB-1997) Botany and Zoology, School of Life Sciences, Australian National University, Canberra, ACT 0200, Australia STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U90885 LOCUS M5U90885 7292 bp DNA INV 29-DEC-1998 DEFINITION Microsporidium 57864 16S ribosomal RNA gene, partial sequence, internal transcribed spacer, 5.8S, 23S and 5S ribosomal RNA genes, complete sequence. ACCESSION U90885 NID g4063830 KEYWORDS . SOURCE Microsporidium 57864. ORGANISM Microsporidium 57864 Eukaryotae; Microsporidia. REFERENCE 1 (bases 1 to 7292) AUTHORS Rice,R.N. TITLE Direct Submission JOURNAL Submitted (25-FEB-1997) Botany and Zoology, School of Life Sciences, Australian National University, Canberra, ACT 0200, Australia FEATURES Location/Qualifiers source 1..7292 /organism="Microsporidium 57864" /strain="Anderson" /db_xref="taxon:57864" /dev_stage="spore resting-stage" rRNA <1..1245 /product="16S ribosomal RNA" misc_RNA 1246..1274 /note="internal transcribed spacer" rRNA 1275..1364 /note="covalently linked" /product="5.8S ribosomal RNA" rRNA 1365..3818 /product="23S ribosomal RNA" rRNA 4098..4216 /product="5S ribosomal RNA" BASE COUNT 2477 a 839 c 1276 g 2700 t BASE COUNT 843 a 319 c 540 g 842 t 6718 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~u aaauuuuGCC CACACAUGGG AUC|AAUAGG 61 |AUACCAU|A A|-CGAUGAA GGU|CGUA(- -AAAG-AA)U |AC-GAAAg- -------|[- 121 ---------- ---------- ---------- ---------- ---------- -------]-- 181 ---------- ---------- ----ag-u|a uuuacc-gAA U---(----- )----|---- 241 ---------- -(-------- ---------- ---------- ---------- ---)------ 301 ---------- ---------- -------uaa uaua--(--- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -----uuua- )--uauauu- ---------- --G----AUA 481 AC|CCUUUGA -A--CU|UA( AGCA)UA-UC AUUAAA-A-G G-AGGAAA-- --AGAAACU( 541 AAC-U)AG-G AU|UUCUUUA GU---AGC(G GCGA)GUG-A A-----CAAG AAUC------ 601 ---------- ---------- ---------- ---------- -AACCCU|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ------(--- ---)------ ---------- ---------- ---------- ---------- 841 ---------- ---------- --------ug auuguaau-- --------cc uuaac-ugga 901 gauguaaa-- --u-cau-u( u-(auucua- )u)uauuua- ---------- --------ua 961 u-|C(AUA)G |AGAA-(uuu uaaa)-UUCg uu|-aguuga uagaauagaa u-----aauu 1021 ucuuu----- ---------- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGGGCU GCU(----UG 1141 GUAG)UGCAG UUUGAA---U ACAGGU-A(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 G-AAUGAGA- ---------- ---------- ---------- )UAU-CUAAG GUU----AAA 1381 UA-------- ---------- -UAAU-GGUA UACCGAUAGC AAAU-AAGUA CU(GCGA)A- 1441 G-GAAUUU-- ---------- ---(------ )--------- ---------- G-UGAAAA-U 1501 GUGUG-GGU< gu--uag-cc uua------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- (uu-uu)--- -----uaagg >------ACC CGU(CUUGAA 2581 GC)ACGG|AC CAAGG-AGAU UAUAAUUAUA GCAAgaua-a aaa------( -------cua 2641 --)------- ---------- -------uu- ---------- --uaaucguu au(uaau)uu 2701 g-[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------a 2881 u--------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ---------- ----)----- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---(------ -)-------- ---------- -]-------- ---------- -AAGUUAUA- 3181 -AUU-AUAAG ACCCGAAACA C-AGUG-AAC UAUA-CAUG- UU|C-UGGUU GAAGAUAAGC 3241 (AACA----- -----)GUUU AUU-GGAAGA CCA-ua---A UC-AUUCUGA (CGUGCAAA) 3301 UCG-A-UGAU UUAAGAUGUG UAUAGUG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CC AAU-CGAACU GUGUGGUAGC UGGUUCACAG CGAAAUGUCU --(CUCA)GG 3421 ACAGC-AGUC -AU-uuu|au a|---uagga ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ------caua -g|aug--ua gg-ac-acug ---------- ------uuau agua--(uuu 3721 a--)--uauu a-uga-|g-- -------aaa ucuuu-aauu |cuaugga-a -gucuauaa- 3781 au--uaa-uu uua---uagg guga------ ---------- ---------- ---------- 3841 ---------- ---------- --aucuau-u g|uA-UGACU -AGU-GGGCA -CAU-GAUU( 3901 G-UAAG)AAU GAU-GUGC-A AAAAGG(GA- UGAA)CCU-- UAUGAAA--- CAUUAAA--U 3961 A|UUcu-a-A --Au-AG-UA Gauau----- --------ua uaccau---- -AAAUAUGAU 4021 G--AAUACAU UGAGACA-GU AGGGCGGUUG UU(AUGG-AA GUA)GAAAUC CG|C(UAA)G 4081 |AAACGU(GU UACA)AC|-- -GUACCUACC -GAAUGUAUU AUU|GU-AUA AAA--UGGAA 4141 G--AAG-Au- ua-CUACUU| U|-------- --UAUgag-- --AUGUUUC| (- -auu-)---- -auuu-AGGU AGCU------ 4441 --GUG|-CA- AU-UU-GU-- --------U- -U-g-uau-- u------GAA GUAU------ 4501 G-UAU(GUGA -)GUACAUA- UAG|A-AGA| A--ACAAAU- GAGC-CGA-U CUUGGA|GG- 4561 CAGUAACAAU -AU------- -(auuug--- ---------- ---------- ---------- 4621 --)------- |uauaGAUAU A-GAC|UAGG GUU|uucaau ------(-ua uu-)--|-au 4681 ugaaGUGAAU |-CGG-Uguu auuu------ -------<-- ------(--- ----)----- 4741 ---------- ---------- ---(------ -------)-- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----au-aaa aacAA-AG-A AGA(UUAAUA AU-)UCUUC| -AU----uaa au-uacu-g- 4981 --[------- ---------- ---------- ---------- -u---aag(- -guga--)cu 5041 ug-------- ---------- ---------- ---------- ---------] ------auga 5101 ugac-----a gu----auau uu-a--caa- -gu-uuaa-g aaaaaugaa) uuaaac-|uu 5161 u-aauau--- ---------- ---|---agc uaug--gauu ----gu(cau g--)auaag- 5221 aa-au-agu- u--------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ---------- ---------- 5341 ---------( --------)- ---------- -------auu -uauau--au gcu--ugaua 5401 aaa-auua-- -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ---------- ---------- ---------- --ug-uaa-- uuuuagCCGU 5581 A|CC---uau aCC(GCAUCA )GG|UGU-CU UUGUA(ucau -)AACAaa-| uauu--||u- 5641 ua-a--auua aa-GUAA-GU A-AGGGAAUU CGGCAA-AUU -AGAUCUGUA AC(UUUG)GG 5701 AUAAAGAUU| GGCUCUAG-- ---------- --------<- ---------- ---------- 5761 ---------- ---------- ---------- ---------- ---------- ---------- 5821 -------(-- ----)----- ---------- ---------- ---------- ---------- 5881 ---------- ---------- ---------- ---------- ---------- ---------- 5941 ---------- ---------- ---------- ---------- ---------- ---------- 6001 ---------- ---------- ---------- ---------- ---------- ---------- 6061 ---------- ---------- ---------- ---------- ---------- ---------- 6121 ---------- ---------- ---------- ---------- ---------- ---------- 6181 ---------- ---------- ---------- ---------- ---------- ---------- 6241 ---------- ---------- ---------- ---------- ---------- ---------- 6301 ---------- ---------- ---------- ---------- ---------- ---------- 6361 ---------- ---------- ---------- ---------- ---------- ---------- 6421 ---------- ---------- ---------- ---------- ---------- ---------- 6481 ---------- ---------- ---------- ---------- ---------- ---------- 6541 -(cau-g)-- ---------- ----->---- --------CU AGAACU|u(- --uua)cuau 6601 gu-aAGGAAU C|-UGACUGU UU(AUUAA)A AACAUAGCUU uuu-|----- -|-gu(---- 6661 auuu)ac--- ---------- ---------- aagAAGUG-- AAUUCUGCCC AGU|GCAUUU 6721 AU-UGUUAA- ---------- ---a(guug) u--------- ----guaaGC G|AAUGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-U( 6841 UAAUU)GGUG AC|GCGCAUG AAUGGAGCAA CGAGAUUCCU ACUGU-CCCU ACUUACAAUU 6901 UU|GUGAAAC C|ACGAGACA AG(GGAA-CG GG)CUUGUUG -A-AUAuCAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UUU-|AGUAU G---uuc-ua |AUAAUUAUU CGGUAUAu-u 7021 guagag-aGG UGGGA----- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -gau-)---- 7141 ---------- ---guauugu ga-aaCCACU |AGUAUGUU- -UGAAU-AUU UAUUUAu--- 7201 ---------- ---------| --<------- ---------- ---------- ---------- 7261 ---------- ---------- ---------- ---------- ---------- -(------)- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- ---------- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- -------->- --uau-gaau a-UAUG-GGG AG-UUUGGCU G(GGG)CGGU 7561 A-C|AGCUGU (UAAAAAGUA AC-)ACAG-C U|G|U|CCU- AAGGU-AGAU |GAAUG-AUG 7621 -G(AUG---- GUAA)CCAUC AGUUUA|UU( A|U--AAGG) GAAUAAA-UC U-GCUUUACU 7681 -UUAUGCA(u a--uaac--- )UGUAUUUAG UAGG(-GAAA )CCUUGG|CC --UAG|CGA- 7741 UCCCAAUU-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ---a-cau(- ---uc-a--u u---)----- ---------- 7861 -----aug|u -AUUGG-gug au|ugA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUA 7921 GCAGGCAAGC G(AUCAU)AG CGACUCUGCU UUUUGAUUCU UCGAUGUC|G UC-U|C|UUC 7981 UG|AUCA|UC G-UAGUG(UA -UA-)UGUUA CGAA-GUGU| UGGAU(UGUU C)ACCCGgua 8041 augGGGAACG UGAGAUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GUAA---<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->----- gu-au-uu-u ugagUGAACU UUGA(UAGUA 8281 C(GAGA)GGA AC-)UCUAAG U|GAUGACCA Cuggu-agug cga|-uuaac u(auua)agu 8341 uau-guugcu u-agcuac-- gu-cguu--u cgauUAAGGC U(GAAAGCCU CUU-A)AGCC 8401 UGaagcgu-a gcuc-----a aaga--uaca u --|------- ---------- 8701 ----gaauga |aggug(uau gccga)ca-u uuug--aggu uac|ugcuuu uuauguguug 8761 gaguagguua au----(uuu aau------- ---------- ---------- ---------- 8821 ----)----a uuguaa---g uu-|ugauuu a-uua--uua u--uua-uua gu--gua-au 8881 uua~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (2)-Myxomy 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS D.iridis 9262 bp RNA RNA 11-JAN-191 DEFINITION Didymium iridis. ACCESSION No information KEYWORDS No information. SOURCE Didymium iridis. ORGANISM Didymium iridis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X60210 LOCUS DIDLSURNA 6482 bp ds-DNA PLN 12-MAR-1992 DEFINITION D.iridis LSU rRNA gene ACCESSION X60210 KEYWORDS 26S ribosomal RNA; 5.8s ribosomal rna; large subunit rRNA; large subunit ribosomal RNA; subtelomeric sequence. SOURCE Didymium iridis DNA. ORGANISM Didymium iridis Eukaryota; Fungi; Myxomycota; Myxomycetes; Myxogastromycetidae; Physarales; Didymiaceae. REFERENCE 1 (bases 1 to 6482) AUTHORS Johansen,S., Johansen,T. and Haugli,F. TITLE Extrachromosomal ribosomal DNA of Didymium iridis: sequence analysis of large subunit ribosomal RNA gene and sub-telomeric region JOURNAL Unpublished (1992) COMMENT *source: strain=Pan 2-16; From EMBL entry DILSURNA; dated 04-FEB-1992. FEATURES Location/Qualifiers rRNA join(587..2971,3545..4226,4915..5550) /gene="26S" rRNA 1..154 /gene="5.8S" prim_transcript 1..5550 /gene="Large subunit rRNA" misc_feature 155..586 /note="transcribed spacer" misc_feature 5551..6104 /note="sub-telomeric region" misc_feature 6105..6482 /note="telomeric region" BASE COUNT 1422 a 1460 c 2069 g 1531 t ORIGIN BASE COUNT 895 a 924 c 1153 g 885 t 5405 others ORIGIN 1 |--------- ---------- ---------- -----ACCGU UAGGCGAUGG AUU|GCUGGG 61 |UACCCGC|U U|-CGACGAA GAG|CGCA(- -GUGA-AA)C |GC-GAUAAC GC-uugu|[- 121 gauucgca-c ucucugugau ---------- ---------- ---------- -------]-- 181 ---------- ---------- ---caacg|U CACCUC-GAA Cau--cgau- --g-c|ggcc 241 uug------c c(-------- ---------- ---------- -----uucg- ---)gg---- 301 --cacuggcc ---ccccugg -u-uu-gccu ugccu-(--- ---u-----/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --------aa )--aggcggc agg-ucag-g gUG----UUC 481 AC|CCGCUCA -A--UU|UA( AGCA)UA-UA AGUCAG-C-G G-AGGAAA-- --AGAAAUC( 541 AAU-A)GA-G AU|UCUCUCA GU---AGC(U GCGA)GCG-A A-----CAGG GAAU------ 601 ---------- ---------- ---------- ---------- -AGCCCG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -----agacc gaaucccagc 781 uccu--(cuc cg-)---ggg gg-gcg-gga ccuguagucu aaaggggugc ucu------- 841 ---gcaag-- ---------- ---------- ---------- ---------g gaa----ggg 901 uucauugcau --u--gg-g( a-(ugauc-- )u)cccgg-- ---------- --------cg 961 --|c(aua)g |ggcg-(uua uacg)-cgac cg|-----ug gauccga--- ---------- 1021 -----ccugc gaagggug-u uccugc---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGGCUA GCU(----UG 1141 AAAG)UGCUG GCUGAA---U AUGGGG-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUGCUGGC-- ---------- ---------- ---------- )CCU-CCAAG GCU----AAA 1381 UA-------- --------ug AAAGCguGGU AACCGAUAGC GAAC-AAGUA CC(GUAA)G- 1441 G--AAAGCUG -AAA-AGCAC CUC(gu-cu- )GAGG-AGCU --AAAAGAGC A-UGAAAUCC 1501 GUCUA-AUG< ug---aacgg gacauccg-- -ggcuc---- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- -guag-aacg gcguc----g 2221 gugggg-(ua gcu)-cccu- gcc--auacg gcgcuuagua -cuac--acg gcuu--cggg 2281 -gaggcuccg cuggggaggg cugccuuugu uguuucuggg ccuac----- -gggcggggg 2341 ggcacuggug gu-uucg-a- uccguagggc uucuccgccu agcuug---- ----cgacgg 2401 u-------ag gggg-a(uuc g)ucuucccu ------gccu ugu------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 aag-gugu-- ---------- aag-agc--u ugg-uuuccc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACGUACAU GCAAGUCU-u -ccagc---( ------cuuc 2641 au)------- ---------- ---g-cugg- ---------- c--cGGCGAA GC(UCAU)GC 2701 AA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------aaa gcaccaa-gg ggcc------ 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----ccc--- ----)----- ---------- ---g-ggccc --gcacugcu 3061 c--------- ---------- ---------- ---------- --uccuaacu gg-gucc--- 3121 -ucgg-gcuu ---------g gau--uggag u]-------- ---------U UGAGCAUGU- 3181 cAUG-UUAGG UCCCGAAAAA C-GACG-AGC UAUG-CUUG- AG|U-AGGCU GAAGCCAGGA 3241 (GAAA----- -----)UCUU GGU-GGAAGG CCG-UC---G CA-GUACUGA (CGUGCAAA) 3301 UCG-U-UUGU CAAACUUGAG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CC AAU-CGAGUC GUUUAGUAGC UGGUUUCCAC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-AAAG -GAA---|-- -|gguu---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ------auaa 3661 agaguGCGGG -G|CGG--UA AA-GACAAUG AUUAGGAGC- -----ACCAG GGAC--(uau 3721 c-g)--GUCU U-UGG-|CUC AUUC-UCAAA CUUUU-AAUG |CUCUGUacg -gg---ccc- 3781 c-ucguccua aacgcggggg g--uccauuc ---------- ---------- ---------- 3841 ---------- ---------- ----aucuag g|UU-CCUUU -AGU-GGGCC -ACG--UUG( 3901 G-UAAG)CAA GGA-UGGC-A AAAAGG(GU- UCAA)ACU-- UAUGCCC--- GGUUAGG--C 3961 U|CUCG-AAA G-C--AU-CG GCACU--c-- ---------a ccaguu---- -AAAAGGUGU 4021 U--GCCCCAU GACGACA-GC UGGGCAGUGG CC(AUGG-AA GCC)GGCAUC UG|C(UAA)G 4081 |GAGUGC(GU AACA)GC|-- -UCACCAGCC -GAAUGGGGU AGC|CC-UGA AAA--UGGAC 4141 G--AGG-UU- CAACCGGUG| U|-------- --AGCCAU-- --ACCGGG-| (- -----)---- ------gAGU AGGG------ 4441 -cGGA|-UA- CC-CU-GG-- --------U- -C-G-GGU-- u------GAA GCGU------ 4501 G-UUG(ccgc -)c--c-ca- UGG|A-CCG| G--CCUGGG- CAGC-AGA-U CUUGGU|AG- 4561 UAGUAGCAAG -UAUUCAUA- U(gcaa---- ---------- ---------- ---------- 4621 ca)CUCUGAA |GGCCGUAGU G-GAG|GAGG GUU|CCUCAA CA-ACA(-GC AGU)UG|CUU 4681 GGGGGUUAGU |-CGGaaUCU AAGC------ -------<-g ccaggg(-ga aa--)ccucg 4741 guaga----- ---------- ---------- ---------- -------cc- -ugg-gaagg 4801 a-ccuauuc- ---gucggg( g-caa-)cuc ggc----ggg ugggaaucuc ccacggc--- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----GC-GAC AGAGA-AG-C AGG(UUAAUA UU-)CCUGC| -AC----uag gc-ugau-ga 4981 g-[cagu--- ---------- ---------- ---------- ------gg(- -gcga--)cc 5041 ---------- uuaaugcaaa ---------- ---------- -----au-c] cga-aacugg 5101 ugac-----g uag---cugg gacc-cggg- -ag-aggg(- aauuuccc-) uccuug-|UU 5161 Acggggguu- ---------a acu---acuc uggu-cagua ---ugc(auu gc-)gcagag 5221 agccagguaa ccu------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----accc-c uAA-----AG 5341 AGUAUGCCG( -uucuu--)C GGUGUAUU-c cuggaa---u ccuucc--gc ugcC-CUAGA 5401 AAA-gccagu -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->ggcugggu aaaaagcg-- ---------- ----uugcgc --uu-cgg-- cc-uaaCCGU 5581 A|CC--Uaa- uCC(GCAUCA )GG|UCU-CC AAGAU(GAGC A)GUCUCU-| GGCGC-||A- 5641 UA-G--AACA AA-GUAGcGU A-AGGGAAUU CGGCAA-GCC -GGAUUCGUA AC(UUUG)GG 5701 AUAAGGAUU| GGCUCUAUA- ---------- -(-----)---- -------CAU AGAACU|U(- --AUA)AAGG 6601 CAAGGGGAAU C|-CAACUGU AU(AAUUA)A AACAUAGCGA UUUG|U--UG G|UGC(---- 6661 caaa)GUG-- ---------- --U-GUAAAC GAAUCGUG-- AUUUCUGCCC AGU|GCUCUG 6721 GA-UGUUAA- ---aauggc- ----(gaaa) -----uccaa ----CCAAGC U|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU+U( 6841 UAAUU)UGUG AC|GCGCAUG AAUGGAUUAA UGAGAUUCCC ACUGU-CCCU ACCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -C-AAU-UAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGGCA C---AAA--C |GCGAGGUGA UUCUAAAGGU 7021 GUAGCAUAGG UGGGAGGc-- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -cugg)---- 7141 --------cC C-GACCUUGA AA-UACCACC |ACUUUCGA- -CAUUG-CCU UGCUAau--- 7201 ---------- ---------| --a AACUA-UUUG U-GUUA-GGG AG-UUUGGCU G(GGG)CGGA 7561 A-A|ACUGCU (-ACACGGCA AC-)GGCA-G U|C|U|CCU- AAGGU-UCAC |UCAGA-GAC 7621 -G(ACA---- GAAA)CGUCU CGUAGA|GC( A|U--AAGG) GCAAAAG-UG A-GCUUAACU 7681 -CACAUUU(u c--aguag-- )UAAUGUGAA GCAA(-GAAA )UUGAGG|CC --UAA|CGA- 7741 UCCUUAA--- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- cggc-ggg(- -uGCC-A--G Cc--)----- ---------- 7861 -----cac|G UUUGAG-GUG AG|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCCGCCAAGC G(UUCAU)AG CGACGUGGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UA C-UAAAG(CA -GA-)AUUCA GUAA-GUGU| UGGAU(UGUU C)ACCC-UCU 8041 UAAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUCCU ACUUG-agucgg auuuu-cu-G ACAGUAGAUC ACCU(CAGUA 8281 C(GAGA)GGA AC-)CGGUGA U|UCGAGCCA CUGGUGUAAG GGC|-UGCUC -(GAGA)-GG 8341 GCAGUGUUCU AACGCUAC-- GC-UCGU--U GGAUGAAGGC U(GGAAGCAU C-U-A)AGCC 8401 CGAAGCCA-U GCUGaa---u aCGA--ACUU U --|------- ---------- 8701 -uguaucgug |uguga(-ca gacga)uc-a cgua-----u uug|uacggg uccugugcgc 8761 u-aau---aa gc-uu----- ---------- -----ucc(g caa-)ggguc ---------- 8821 ---------- -uugcgagu- ugu|ugaggg a|acc--ucu g--ua-cccc c----ca-ug 8881 guuuu|aggc ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS P.flavicom 9262 bp RNA RNA 11-JAN-191 DEFINITION Physarum flavicomum str. UFF6. ACCESSION No information KEYWORDS No information. SOURCE Physarum flavicomum str. UFF6. ORGANISM Physarum flavicomum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X78959 ID PFLSRR standard; DNA; FUN; 3052 BP. XX AC X78959; XX DT 26-APR-1994 (Rel. 39, Created) DT 26-APR-1994 (Rel. 39, Last updated, Version 1) XX DE P.flavicomum (UFF6) large subunit rRNA gene. XX KW large subunit ribosomal RNA. XX OS Physarum flavicomum OC Eukaryota; Plantae; Thallobionta; Myxomycota; Myxomycetes; OC Myxogastromycetidae; Physarales; Physaraceae. XX RN [1] RL Vader A., Naess J., Haugli K., Haugli F., Johansen S.; RL "Nucleolar introns from Physarum flavicomum contain insertion RL elements that may explain how mobile group I introns gained their RL open reading frames"; RL Unpublished. RL RN [2] RP 1-3052 RL Johansen S.; RL ; RL Submitted (18-APR-1994) to the EMBL/GenBank/DDBJ databases. RL S. Johansen, Institute of Medical Biology, University of Tromsoe, RL MH-building Breivika, 9037 Tromsoe, NORWAY XX FH Key Location/Qualifiers FH FT source 1..3052 FT /organism="Physarum flavicomum" FT /strain="UFF6" FT rRNA join(1..450,1088..1780,2965..3052) FT /product="large subunit ribosomal RNA" FT exon 1..450 FT /number=1 FT exon 1088..1780 FT /number=2 FT exon 2965..3052 FT /number=3 FT intron 451..1087 FT /number=1 FT /note="group I intron" FT intron 1781..2964 FT /number=2 FT /note="group I intron" XX SQ Sequence 3052 BP; 741 A; 811 C; 929 G; 571 T; 0 other; BASE COUNT 298 a 289 c 358 g 286 t 8031 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~(~~~~~~ ~)~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~--~~|~~( ~~~~)~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 901 ~~~~~~~~~~ ~~~-~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 --|~(~~~)~ |~~~~-(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~-~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~-~(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~-------- --------~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~------ -~~~~~~~-- -----~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~]~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~----- ----~)~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~-- 3361 --~)~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ --(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~-|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~--~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~-~~~~~ ~~~~~~~~~~ ~~~~-~~~~( 3901 ~~~~~~)~~~ ~~~-~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~-- ~~~~~~~--~ 3961 ~|~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---- ~~~~~~~~~~ 4021 ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~-~~~ ~~~--~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~-- -~~~~~~~~~ ~~~~~~~~~~ ~----~-~~~ ~~~~---~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~- ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-----~-- -~---~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~----~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ---~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ----~~~~~~ ~~~----~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~GAAUU CGGCAA-GCC -GGAUUCGUA AC(UUCG)GG 5701 AUAAGGAUU| GGCUCUAUA- ---------- -(-----)---- -------CAU AGAACU|U(- --ACA)AAGG 6601 CUAGGGGAAU C|-CAACUGU AU(AAUUA)A AACAUAGCGA UUUG|U--UG G|UGC(---- 6661 caaa)GCG-- ---------- --U-GUAAAC GAAUCGUG-- AUUUCUGCCC AGU|GCUCUG 6721 GA-UGUUAA- ---aauggc- ----(gaaa) -----uccaa ----CCAAGC U|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU+U( 6841 UAAUU)UGUG AC|GCGCAUG AAUGGAUUAA UGAGAUUCCC ACUGU-CCCU ACCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -C-AAU-UAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGGCA U---AGA--A |GCGAGGUGA UUCUAAAGGU 7021 GUAGCAUAGG UGGGAGAGC- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- -----acauu uaucc-->(- -----)---- 7141 -------GCU C-GCCAAUGA AA-UACCACC |ACUUUCGA- -UAUUG-CUU UGCUAau--- 7201 ---------- ---------| --a GACUA-UCUA U-GUUG-GGG AG-UUUGGCU G(GGG)CGGA 7561 A-A|ACUGCU (-ACACGGCA AC-)GGCA-G U|C|U|CCU- AAGGU-CCGC |UCAGA-GAC 7621 -G(ACA---- GAAA)CGUCU CGUAGA|GC( A|U--AAAG) GCAAAAG-CG G-GCUUAACU 7681 -CGCAUUU(u c--aguag-- )UAAUGUGAA GCAA(-GAAA )UUGCGG|CU --UAA|CGA- 7741 UCCUUAG--- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- cggc-ggg(- -uGCC-A--G Cc--)----- ---------- 7861 -----cac|G CUUGAG-GUG AG|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCCGCCAAGC G(UUCAU)AG CGACGUGGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UA C-UAAAG(CA -GA-)AUUC~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS P.polyce.1 9262 bp RNA RNA 28-JAN-1983 DEFINITION Physarum polycephalum 5.8S & 26S. ACCESSION No information KEYWORDS No information. SOURCE Physarum polycephalum 5.8S & 26S. ORGANISM Physarum polycephalum 5.8S & 26S. REFERENCE 1 (bases 1 to 8871) AUTHORS No information JOURNAL 3163-3167(1983) checked 6/28/83 STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 9262) Corresponding GenBank entry: V01159 Phylo:Eukaryotes,Protozoan BASE COUNT 975 a 950 c 1161 g 857 t 5319 others ORIGIN 1 |--------- ---------- ---------- -----ACCGU UGGGCGAUGG AUU|GCUUGG 61 |UGCCUGC|U U|-CGACGAA GAG|CGCA(- -GUGA-AA)C |GC-GAUAAC UU-uugu|[- 121 gacucgca-c ucucugugau ---------- ---------- ---------- -------]-- 181 ---------- ---------- ---caacg|U CUCCUU-GAA Cau--uagu- --g-c|ggcc 241 uug------c c(-------- ---------- ---------- -----uucg- ---)gg---- 301 --cacuggcc ---cccuugg -g-au-gccu ugucc-(--- ---uu----/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --------cg )--ggauggc aga-ccag-g gCG----UUC 481 AC|CCGCUCA -A--UU|UA( AGCA)UA-UU AGUCAG-C-G G-AGGAAA-- --AGAAAUC( 541 AAU-C)GA-G AU|UCCCGUA GU---AGC(U GCGA)GCG-A A-----CAGG GAAA------ 601 ---------- ---------- ---------- ---------- -AGCCCG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -----agacc gaaucccuuc 781 cccc--(cua gc-)---ggg gg-ucgcgga ccuguagucu aaggguuggg acc------- 841 ---gcgag-- ---------- ---------- ---------- ---------u caaag-acuu 901 a-cagcaca- --c--ag-g( c-(uaaga-- )u)ccugg-- ---------- --------ag 961 --|c(aca)g |ggcg-(uua cacg)-cgac c-|-----ug guagggc-gg c--------- 1021 -----gacga gagggacu-g acccgc---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGGCCA GCU(----UG 1141 AAAG)UGCUG GCUGAA---G AUAGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUGCUGGC-- ---------- ---------- ---------- )CAU-CUAAG GCU----AAA 1381 UA-------- --------ug AAAGC-AGGC AACCGAUAGC AAAC-AAGUA CC(GUAA)G- 1441 G-GAAAGCUG -AAA-AGCAC CUC(g--uu- )GAGG-AGUU --AAAAGAGC A-UGAAAUCC 1501 GCCCA-AUG< ag---aacgg uaaaucuaua cggcuc---- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- -gucg-aaag gcgcu---gg 2221 gcgggg-(uu cgu)-ccccu gcc--auacg gcgcugagua -cggc--aca gcug--cggc 2281 ugaggcgacg cugggaaagg ugaccuaacg gccaaucucg cuuac----- -gggcgagga 2341 cggucaagga c--accgga- accgcgggac cucuccgucu aggcu----- ----uacacu 2401 c-acgcguga augg-g(uuc g)ccccauaa ccgugagacg ua-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 cagcgugu-- ---------- cag-agc--u uag-uuuacc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACGUACAU GCAAGUCg-a acagc----( ------uuuc 2641 ac)------- ---------- -----gcug- ---------- agacGGCGAA GC(UAAU)GC 2701 AA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------aaa gcaccca-gg gcgagcc--- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----uau--- ----)----- ---------g gcgg-acccc --gcaaugcu 3061 c--------- ---------- ---------- ---------- --uccuaacc gg-gcuc--- 3121 -ucgg-gcuu ---------g gau--uggag u]-------- ---------U UGAGCAUGU- 3181 cAUG-UUAGG UCCCGAAAAA C-GACG-AGC UAUG-CUUG- AG|U-AGGCC GAAGCCAGGA 3241 (GAAA----- -----)UCUU GGU-GGAAGG UCGuAC---G CA-GUACUGA (CGUGCAAA) 3301 UCG-U-UUGU CAAACUUGAG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CC AAU-CGAGUC GUUUAGUAGC UGGUUUCCAC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-AAAG -GAA--a|-- -|-aag---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ------uguc 3661 g-aguAUGGG -G|CGG--UA AA-GACAAUG AUUAGGAGC- -----ACCGG GCGG--(uuu 3721 g-a)--CCGU U-CGG-|CUC AUUC-UCAAA CUUUU-AAUG |CUCUAAagc -cauugacc- 3781 acgcgucgua gcagcgcugg uc-ugggcag u--------- ---------- ---------- 3841 ---------- ---------- ----aucggg u|cU-CCUUU -AGU-GGGCC -ACG--UUG( 3901 G-UAAG)CAA GGA-UGGC-A AAAAGG(GU- UCAA)ACU-- UGUGCCC--- GGUUAGG--U 3961 U|CUCG-AAG A-C--AU-UG GCAAU--g-- ---------a ccacuc---- -AAAAGGUAU 4021 U--GCCUCAU GAUGACA-GC UGGACAGUGG CC(AUGG-AA GCC)GGCAUC UG|C(UAA)G 4081 |GAGUGC(GU AACA)GC|-- -UCACCAGCC -GAAUGGGGU AGU|CC-UGA AAA--UGGAC 4141 G--AGG-UU- CAACCAGUG| C|-------- --AACCAU-- --ACC-GGC| (- -----)---- ------gAGU AGGG------ 4441 -cGGA|-UA- CC-CCaGG-- --------U- -C-G-GGU-- u------GAA GCGU------ 4501 G-CUG(UUGA -)CAGCACG- UGG|A-CCG| G--CCGGGG- CAGC-AGA-U CUUGGU|AG- 4561 UAGUAGCAAG -UAUUCAUA- U(gcaa---- ---------- ---------- ---------- 4621 ca)CUCUGAA |GGCCGAAGU G-GAG|GAGG GUU|CCUCAA CA-ACA(-GC AGU)UG|AUU 4681 GGGGGUUAGU |-CGGaaUCU AAGC------ -------<-g ucaagg(-ga aa--)ccuag 4741 guuaa----- ---------- ---------- ---------- -------ccu cggg-cucuc 4801 guccgcgguc -cugacggg( guaaca)ccc gucucguacc guggcuuggg cucggac--- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----GC-GAC AGAGA-AG-C GGG(UUAAUA UU-)CCUGC| -AC----uca acucgau-gu 4981 ga[cagu--- ---------- ---------- ---------- ------gg(- -gcga--)cc 5041 ---------- uuaaagcgau ---------- ---------- -----au-c] cga-aaccag 5101 ugac-----g uaa---cugg gaac-cgug- -ag-aggg(- auuuuccc-) uccuug-|UU 5161 Acgggaguu- ---------a acu---gcuc uggu-aagcu ---ugc(auu gu-)gcagau 5221 gcccaggcaa ccu------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----acuc-c ucg-----AG 5341 AGCAUGUCG( -uucuu--)C GAUGUGUU-c gcgguc---u ccuucc--gu ugcC-CUAGA 5401 AAA-gcuggc -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->agaugggu gaaacgug-- ---------- ----uugucc --uu-cgg-- uu-gaaCCGU 5581 A|CC--Uaa- uCC(GCAGCA )GG|UCU-CC AAGAU(GAGC A)GUCUCU-| GGCGC-||A- 5641 UA-G--AACA AA-GUAGcGU A-AGGGAAUU CGGCAA-GCC -GGAUUCGUA AC(UUCG)GG 5701 AUAAGGAUU| GGCUCUAUA- ---------- -(-----)---- -------CGU AGAACU|U(- --ACA)AAGG 6601 CUAGGGGAAU C|-CAACUGU AU(AAUUA)A AACAUAGCGA UUUG|U--UG G|UGC(---- 6661 caaa)GCG-- ---------- --U-GUAAAC GAAUCGUG-- AUUUCUGCCC AGU|GCUCUG 6721 GA-UGUUAA- ---aauggc- ----(gaaa) -----uccaa ----CCAAGC U|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-U( 6841 UAAUU)UGUG AC|GCGCAUG AAUGGAUUAA UGAGAUUCCC ACUGU-CCCU ACCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -C-AAU-UAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGGCA U---AGA--C |GCGAGGUGA UUCUAAAGGU 7021 GUAGCAUAGG UGGGAGGGC- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -CCAU)---- 7141 -------GCC C-GUCAAUGA AA-UACCACC |ACUUUCGA- -CAUCG-CUU UGCUAau--- 7201 ---------- ---------| --a GACUA-UCUA U-GUUG-GGG AG-UUUGGCU G(GGG)CGGA 7561 A-A|ACUGCU (-ACACGGCA AC-)GGCA-G U|C|U|CCU- AAGGU-CCAC |UCAGA-GAC 7621 -G(ACA---- GAAA)CGUCU CGUAGA|G-( A|U--AAAG) GCAAAAG-UG G-GCUUAACU 7681 -CGCAUUU(u c--aguag-- )UAAUGUGAA GCAA(-GAAA )UUGCGG|CU --UAA|CGA- 7741 UCCUUAG--- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- cggc-ggg(- -uGCC-A--G Cc--)----- ---------- 7861 -----cac|G CUUGAG-GUG AG|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCCGCCAAGC G(UUCAU)AG CGACGUGGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UA C-UAAAG(C- -GA-)AUUCA GUAA-GUGU| UGGAU(UGUU C)ACCC-ucu 8041 uaAGGGAACG UGAGCUGGGU UUAGAC---- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUCCU ACUUG-agcgGU GUgCC-CU-G AUAGUAGAUC ACUU(CAGUA 8281 C(GAGA)GGA AC-)CAGUGA U|UCAGACCA AUGGUGUAAG CGC|-UGCUC -(GAAC)-GG 8341 GCAGAGCGCU AGAGCUAC-- GU-CUGU--U GGAUGAAGGC U(GGAAGCAU C-U-A)AGCC 8401 CGAAGCCA-U GCUAga---u aGGG--GACG U --|------- ---------- 8701 -cguaaacca |cacag(-ca uacga)cu-g ugcg------ uag|cggaaa ugguguuagu 8761 g-auc---aa gc-ug----- ---------- ---gcugg(c cgu-)cuagc a--------- 8821 ---------- -uugcgaga- cgc|ugagcc a|gug--uuu g--cg-uuuu u----uu-gu 8881 c----|-ggc ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS P.polyce.2 9262 bp RNA RNA 11-JAN-191 DEFINITION Physarum polycephalum. ACCESSION No information KEYWORDS No information. SOURCE Physarum polycephalum. ORGANISM Physarum polycephalum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X60211 LOCUS SLM26SRNA 2675 bp ds-DNA PLN 12-MAR-1992 DEFINITION P.polycephalum 26S rRNA ACCESSION X60211 KEYWORDS 26S ribosomal RNA. SOURCE Physarum polycephalum DNA. ORGANISM Physarum polycephalum Eukaryota; Fungi; Myxomycota; Myxomycetes; Myxogastromycetidae; Physarales; Physaraceae. REFERENCE 1 (bases 1 to 2675) AUTHORS Johansen,S. TITLE Strain-dependent sequence heterogeneity in the nuclear group I introns and large subunit ribosomal RNA in Physarum polycephalum JOURNAL DNA Sequence 2, 193-196 (1991) COMMENT *source: strain=M3C; From EMBL entry PP26SRNA; dated 04-FEB-1992. FEATURES Location/Qualifiers rRNA join(1..402,899..1584,2588..2675) /gene="26S" BASE COUNT 652 a 651 c 805 g 567 t ORIGIN BASE COUNT 295 a 275 c 339 g 267 t 8086 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~(~~~~~~ ~)~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~--~~|~~( ~~~~)~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 901 ~~~~~~~~~~ ~~~-~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 --|~(~~~)~ |~~~~-(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~-~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~-~(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~-------- --------~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~------ -~~~~~~~-- -----~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~]~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~----- ----~)~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~-- 3361 --~)~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ --(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~-|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~--~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~-~~~~~ ~~~~~~~~~~ ~~~~-~~~~( 3901 ~~~~~~)~~~ ~~~-~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~-- ~~~~~~~--~ 3961 ~|~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---- ~~~~~~~~~~ 4021 ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~-~~~ ~~~--~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~-- -~~~~~~~~~ ~~~~~~~~~~ ~----~-~~~ ~~~~---~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~- ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-----~-- -~---~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~----~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ---~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ----~~~~~~ ~~~----~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~GAAUU CGGCAA-GCC -GGAUUCGUA AC(UUCG)GG 5701 AUAAGGAUU| GGCUCUAUA- ---------- -(-----)---- -------CGU AGAACU|U(- --ACA)AAGG 6601 CUAGGGGAAU C|-CAACUGU AU(AAUUA)A AACAUAGCGA UUUG|U--UG G|UGC(---- 6661 caaa)GCG-- ---------- --U-GUAAAC GAAUCGUG-- AUUUCUGCCC AGU|GCUCUG 6721 GA-UGUUAA- ---aauggc- ----(gaaa) -----uccaa ----CCAAGC U|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU+U( 6841 UAAUU)UGUG AC|GCGCAUG AAUGGAUUAA UGAGAUUCCC ACUGU-CCCU ACCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -C-AAU-UAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGGCA U---AGA--C |GCGAGGUGA UUCUAAAGGU 7021 GUAGCAUAGG UGGGAGGGC- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -CCAU)---- 7141 -------GCC C-GUCAAUGA AA-UACCACC |ACUUUCGA- -CAUCG-CUU UGCUAau--- 7201 ---------- ---------| --a GACUA-UCUA U-GUUG-GGG AG-UUUGGCU G(GGG)CGGA 7561 A-A|ACUGCU (-ACACGGCA AC-)GGCA-G U|C|U|CCU- AAGGU-CCAC |UCAGA-GAC 7621 -G(ACA---- GAAA)CGUCU CGUAGA|GC( A|U--AAAG) GCAAAAG-UG G-GCUUAACU 7681 -CGCAUUU(u c--aguag-- )UAAUGUGAA GCAA(-GAAA )UUGCGG|CU --UAA|CGA- 7741 UCCUUAG--- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- cggc-ggg(- -uGCC-A--G Cc--)----- ---------- 7861 -----cac|G CUUGAG-GUG AG|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCCGCCAAGC G(UUCAU)AG CGACGUGGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UA C-UAAAG(CA -GA-)AUUC~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (2)-Paraba 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS P.hominis 9262 bp RNA RNA 09-NOV-1992 DEFINITION Pentatrichomonas hominis.; 28S ribosomal RNA. ACCESSION Z18259 KEYWORDS 28S ribosomal RNA. SOURCE Pentatrichomonas hominis. ORGANISM Pentatrichomonas hominis. REFERENCE 1 (bases 1 to 291) AUTHORS Viscogliosi,E., Philippe,H., Baroin,A., Perasso,R. and Brugerolle,G. TITLE Molecular phylogeny of Trichomonads based on partial sequences of large subunit rRNA and comparison with cladistic analysis of morphological data JOURNAL J. Protozool. 0, 0-0 (1992) STANDARD No information REFERENCE 2 (bases 1 to 291) AUTHORS Perasso,R. TITLE Direct Submission JOURNAL Submitted (02-NOV-1992) Perasso R., Universite Paris XI, Biologie Cellulaire 4, Bat. 444, ORSAY, FRANCE, 91405 cedex STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: Z18259 NCBI gi: 9988 BASE COUNT 92 a 54 c 80 g 65 t 8971 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~AAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-U)AG-G AU|UCCCUUA GU---AAA(G GCGA)UCG-A A-----GAGG GAAG------ 601 ---------- ---------- ---------- ---------- -agccca|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- -auaucuuaa 781 uccc---gca a------ggg a--------- --------ca uguagacauu gaucuua--- 841 ---------- ---------- ---------- ---------- ---------- --uug-ccac 901 aguc-uaagc --a--cg-u( u-(-gaau-- )a)au-gc-- ---------- --------GC 961 --|G(AUA)C |AGAG-(UGA UAGC)-CUCG UU|--agacu accg--gcaa g-----uuuc 1021 gg-------- ---------u acauuggagu ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUA CUU(----UG 1141 AGAG)UGGUG CCCUAA---G UAgg-u-g(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 guaugccc-- ---------- ---------- ---------- )cau-ccaag gcu----aaa 1381 ua-------- --------cu g--UG-AGGA GACCGAUAGA UUAC-AAGUA GU(GUGA)A- 1441 C-GAAAG~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~]~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 3361 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.vaginali 9262 bp RNA RNA 30-SEP-1988 DEFINITION Trichomonas vaginalis.; 28S ribosomal RNA. ACCESSION M19224 J03648 KEYWORDS 28S ribosomal RNA. SOURCE Trichomonas vaginalis. ORGANISM Trichomonas vaginalis. REFERENCE 1 (bases 1 to 341) AUTHORS .P. and Adoutte,A. Baroin,A., Perasso,R., Qu,L.-H., Brugerolle,G., Bachellerie,J.-P TITLE sequencing of a portion of 28S ribosomal RNA Partial phylogeny of the unicellular eukaryotes based on rapid JOURNAL Proc. Natl. Acad. Sci. U.S.A. 85, 3474-3478 (1988) STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: M19224 Draft entry and printed copy of sequence for [1] kindly provided by A.Baroin, 26-APR-1988. NCBI gi: 176248 BASE COUNT 107 a 70 c 90 g 70 t 8925 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~nnu )--agu-cug cca-uacg-c agg----aag 481 AC|CCGCUGA -A--CU|GA( AGCA)UC-UC AUUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-U)AG-G AU|UCCCUUA GU---AAA(G GCGA)UCG-A A-----AAGG GAAC------ 601 ---------- ---------- ---------- ---------- -agccca|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- -acgucuuaa 781 uccc---gca a------ggg a--------- --------aa uguagucggu ucaccua--- 841 ---------- ---------- ---------- ---------- ---------- --uug-cacu 901 gguc-uaa-- --g-uca-g( a-(uggaa-- )u)cu-gc-- ---------- --------GC 961 --|G(AUU)C |AGAG-(UAA AAGC)-CUCG UA|--ugacc aaccgcaagc u-----uac- 1021 ga-------- ---------u ggaccgggga ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGAUA CUU(----UG 1141 AGAG)UAGUG UCUUAA---G -ggggu-g(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 guaugucc-- ---------- ---------- ---------- )cau-ccaag gcu----aaa 1381 ua-------- --------ac g--UG-AGGA GACCCAUAGA UUAC-AAGUA GU(GUGA)A- 1441 C-GAAAnn~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~]~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 3361 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.augusta 9262 bp RNA RNA 09-NOV-1992 DEFINITION Tritrichomonas augusta.; 28S ribosomal RNA. ACCESSION Z18261 KEYWORDS 28S ribosomal RNA. SOURCE Tritrichomonas augusta. ORGANISM Tritrichomonas augusta. REFERENCE 1 (bases 1 to 288) AUTHORS Viscogliosi,E., Philippe,H., Baroin,A., Perasso,R. and Brugerolle,G. TITLE Molecular phylogeny of Trichomonads based on partial sequences of large subunit rRNA and comparison with cladistic analysis of morphological data JOURNAL J. Protozool. 0, 0-0 (1992) STANDARD No information REFERENCE 2 (bases 1 to 288) AUTHORS Perasso,R. TITLE Direct Submission JOURNAL Submitted (02-NOV-1992) Perasso R., Universite Paris XI, Biologie Cellulaire 4, Bat. 444, ORSAY, FRANCE, 91405 cedex STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: Z18261 NCBI gi: 10366 BASE COUNT 91 a 55 c 78 g 64 t 8974 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~AAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-U)AG-G AA|UCUCUUA GU---AAG(U GCGA)CCG-A A-----GAGA GGAA------ 601 ---------- ---------- ---------- ---------- -aguucg|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- -ucgaccuaa 781 ucc----cuc g-------gg a--------- --------aa ugugguugag gggucuu--- 841 ---------- ---------- ---------- ---------- ---------- --uua-ccug 901 gcau-uaa-c --u--gg-a( g-(ucaaau- )c)uc-cg-- ---------- --------GC 961 --|U(AUA)A |AGAG-(UUU AAGC)-CUCG UU|--gcuaa u--g--guaa g-----cua- 1021 gg-------- ---------u cccuguaaac ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGCA GCU(----UG 1141 AGAA)UGCUG CCUUAA---G ACgggu-u(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 gaacgucc-- ---------- ---------- ---------- )ccu-cagaa acu----aaa 1381 ua-------- --------cu g--UA-AGAA GACCCAUAGA GCAC-AAGUA GU(GUGA)A- 1441 G-GAAAG~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~]~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 3361 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.foetus 9262 bp RNA RNA 08-NOV-1992 DEFINITION Tritrichomonas foetus.; 28S ribosomal RNA. ACCESSION Z18239 KEYWORDS 28S ribosomal RNA. SOURCE Tritrichomonas foetus. ORGANISM Tritrichomonas foetus. REFERENCE 1 (bases 1 to 287) AUTHORS Brugerolle,G. Viscogliosi,E., Philippe,H., Baroin,A., Perasso,R. and TITLE cladistic analysis of morphological data Molecular phylogeny of Trichomonads based on partial sequences of large subunit rRNA and comparison with JOURNAL J. Protozool. 0, 0-0 (1992) STANDARD No information REFERENCE 2 (bases 1 to 287) AUTHORS Perasso,R. TITLE Direct Submission JOURNAL Submitted (02-NOV-1992) Perasso R., Universite Paris XI, Biologie Cellulaire 4, Bat. 444, ORSAY, FRANCE, 91405 cedex STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: Z18239 NCBI gi: 10702 BASE COUNT 91 a 53 c 82 g 61 t 8975 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~AAG-C-G G-AGGGAA-- --AGAAACU( 541 AAC-U)AG-G AA|UCUCUUA GU---AAG(U GCGA)CCG-A A-----GAGA GUCA------ 601 ---------- ---------- ---------- ---------- -aguucg|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- -uugaccuaa 781 ucc----cuc g-------gg a--------- --------aa ugugguugag agguucu--- 841 ---------- ---------- ---------- ---------- ---------- --cug-ccau 901 agcg-uaa-c --u--gg-a( g-(ucgaau- )c)uc-cg-- ---------- --------GC 961 --|U(AUA)A |AGAG-(UUU AAGC)-CUCG UA|--gcuau g--g--gcaa g-----cua- 1021 gg-------- ---------u ccuuguaaac ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGCA GCU(----UG 1141 AGAA)UGCUG CC-UAA---G AUgggu-g(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 guacgccc-- ---------- ---------- ---------- )cau-cagaa acu----aaa 1381 ua-------- --------au g--UA-AGAA GACCGAUAGA GCAC-AAGUA GU(GAGA)A- 1441 G-GAAAG~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~]~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 3361 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.muris 9262 bp RNA RNA 09-NOV-1992 DEFINITION Tritrichomonas muris.; 28S ribosomal RNA. ACCESSION Z18255 KEYWORDS 28S ribosomal RNA. SOURCE Tritrichomonas muris. ORGANISM Tritrichomonas muris. REFERENCE 1 (bases 1 to 286) AUTHORS Brugerolle,G. Viscogliosi,E., Philippe,H., Baroin,A., Perasso,R. and TITLE Molecular phylogeny of Trichomonads based on partial sequences of large subunit rRNA and comparison with cladistic analysis of morphological data JOURNAL J. Protozool. 0, 0-0 (1992) STANDARD No information REFERENCE 2 (bases 1 to 286) AUTHORS Perasso,R. TITLE Direct Submission JOURNAL Submitted (02-NOV-1992) Perasso R., Universite Paris XI, Biologie Cellulaire 4, Bat. 444, ORSAY, FRANCE, 91405 cedex STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: Z18255 NCBI gi: 10747 BASE COUNT 82 a 50 c 88 g 66 t 8976 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~AAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-U)AG-G AA|UCUCUUA GU---AAG(U GCGA)CCG-A A-----GAGA GGAA------ 601 ---------- ---------- ---------- ---------- -agucgg|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- -ucgacccaa 781 ucc----uuu u-------gg a--------- --------aa ugugguugag aggcuuu--- 841 ---------- ---------- ---------- ---------- ---------- --uug-cuag 901 agcg-uaa-c --u--ug-u( g-(augguu- )c)ac-ag-- ---------- --------GC 961 --|U(AUA)A |AGAG-(UUU AAGC)-CUCG UA|--gcuuu ---u--gcaa g-----cua- 1021 gg-------- ---------u cccuguaaac ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGCA GCU(----UG 1141 AGAA)UGCUG CCUUAA---G -uaggu-g(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 guacgccc-- ---------- ---------- ---------- )cau-cagaa acu----gga 1381 ug-------- --------cu g--UG-AGAA GACCGAUGGA GCGC-GAGUG GU(GUGA)A- 1441 G-GAAAG~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~]~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 3361 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (2)-Crown 9262 bp RNA RNA ~?~???? DEFINITION Eukaryote crown group. ACCESSION No information KEYWORDS No information. SOURCE Eukaryote crown group. ORGANISM Eukaryote crown group. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS (3)-Alveol 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS (4)-Apicom 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS (5)-Coccid 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS E.tenella 9262 bp RNA RNA 30-OCT-1997 DEFINITION Eimeria tenella.; . ACCESSION AF026388 KEYWORDS . SOURCE Eimeria tenella. ORGANISM Eimeria tenella. REFERENCE 1 (bases 1 to 8502) AUTHORS Littlebury,P.L. and Tomley,F.M. TITLE Direct Submission JOURNAL Submitted (23-SEP-1997) Mol. Biol, Institute for Animal Health, Compton, Newbury, Berkshire RG20 7NN, UK STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF026388 BASE COUNT 904 a 756 c 1019 g 964 t 5619 others ORIGIN 1 |--------- ---------- ---------- ----AAACUU UCAGCAAUGG AUG|UCUUGG 61 |CUCACGC|A U|-CGAUGAA GGA|CGCA(- -GCGA-AA)U |GC-GAUACG CA-uugu|[- 121 gaauugcaga uuucagugaa c--------- ---------- ---------- -------]-- 181 ---------- ---------- ---cauca|G AUUUCU-GAA Cgc-(acaug )-g-c|--gc 241 ugc----ugg u(-------- ---------- ---------- -----auuuu ---)gccc-- 301 -----gcagc ---acgucug -u-uu-cagu gucu--(--- ---cu----/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------au- )--agaccug aaaucagu-c gAG----GUU 481 AC|CCGCUGA -A--UU|UA( AGCA)UA-UU AUUAAG-C-G G-AGGAAA-- --AGAAAAU( 541 AAC-A)AU-G AU|UCCCUCA GU---AAC(G GCGA)GUG-A A-----GCGG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------a agugaaaauc gug------a 781 gucccu(uug uu-)uggc-- cu----cacg aauugua--- ----gccucu agaag-cgug 841 gccagugg-a gg-g------ ---------- ---------- ---------- gcagg-u--- 901 ----ccaa-- --g-uuu-c( u-(uggaac- )a)gaa-c-- ---------- --------AU 961 --|C(AGA)G |AGGG-(UGA CAGU)-CCCG UC|--cuuug -uccugcuug u----uaggu 1021 cuccacgua- cggugcgc-u uuuauu---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGCGUU CAU(----UG 1141 GGAU)UUGAG CGCAAA---- auGUGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 AUAAGUUU-- ---------- ---------- ---------- )CAC-AUAAA GCU----AAA 1381 UA-------- ---------- UUGGC-GUGA GACCGAUAGU GAAC-AAGUA CU(GUGA)A- 1441 G-GAAAGAUG -AAA-AGGAC UUU(gg-aa- )AGAG-AGUU --AAAAGUGU C-UGAAAU-U 1501 GCUGA-AAG< gg---aagcg auugaaacuu --uagcgu-c ucuggggug- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------c cg-auugggu acuuguagug 2221 uugugcuucc acacuuccgu ua-cagg-gg uagggggcgu ucaguacugc uuuuguccag 2281 uucgaucccu ggagguuggu ca-gcaucag -ugaacugac -ugacuauac uccccgagga 2341 agguaggucu cucgugggc- uguuauagcc ucuggguuug uguucaguug uucacugagg 2401 uguguuuuuu uuugcguucg --ucagcuuc acu(-uucg) aguacugacg uucu------ 2461 ---------- ---------- ---------- ---------- ---------- ---------g 2521 cgau-gcu-- --------gu ccu-uaac-g guuucaaccg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUAUGU GCGAGUAu-- gcggg----( ----c-cgaa 2641 cc)------- ---------- ---c-cugu- ---------- ---aUGCACA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------gag uaggga--ga gguuuguu-- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ---uuuuu-- ----)----- ---------- ggcaugccuc --gcaccuac 3061 g--------- ---------- ---------- ---------- -------acc ga-cc-acga 3121 gc-(u-uu-- -)-gcgaga- -ggu-uugag u]-------- ---------U GUAGCACAU- 3181 -CUG-UUAGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AG|U-AGGGU GAAGUCAGGC 3241 (GAAA----- -----)GCCU GAU-GGAGGC UCG-UA---G CG-AUACUGA (CGUGCAAA) 3301 UCG-U-UCGU CAAACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC GUCUAGUAGC UGGUUUCUUC CGAAGUUUCU --(CUCA)GG 3421 AUAGC-UGGA -GUUc--|-- -|-aa----- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------u 3661 u-aguUUUAU -C|AGG--UA AA-GCGAAUG AUUAGAGGc- -----cucgg gggcg-(cgu 3721 ---)-ugccc u-cga-|CCU AUUC-UCAAA CUUUA-AAUG |GGUAAGauc -ca-guggu- 3781 u-acuucacu g--aacugcu gggguu---- ---------- ---------- ---------- 3841 ---------- ---------- ----AAUa-u g|AA-CUCCA -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGAGG(GA- UGCU)CCU-- AACGCUU--- GGUUAAG--G 3961 U|GCCC-AAA U-A--CU-CG CUCAU-ga-- --------ga uaccau---- -AAAAGGUGU 4021 U--GGUUCAU UUUGACA-GC AGGACGGUGG UC(AUGG-AA GUC)GAAAUC CG|C(UAA)G 4081 |AAGUGU(GU AACA)AC|-- -UUACCUGCC -GAAUGAACC AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- GCAGCG-GU| U|-------- --ACCGAU-- --ACCAGGC| (- -----)-gcg guaau-gAGU AGGA------ 4441 --AGA|-CG- UG-GG-GA-- --------u- -c-g-uag-- c------GAA GCAU----UC 4501 G--GC(GUGA G)CCU-GUG- UGG|A-ACG| G--UCUCUA- GUGC-AGA-U CUUGGU|GG- 4561 CAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GACUGAAGU G-GAG|AAGG GUU|CCAUGU GA-ACA(-GC AAU)UG|GAC 4681 AUGGGUUAGC |-CGG-UCCU AAGC------ -------<-- --gacag-c- -uuaa--cug 4741 cgua-aauuu c--------- -gggg-cuu- -------uuu guccucguuu auc------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----GC-GAA AGGGA-AUAC AGG(AUAAUA UU-)CCUGA| -GC----cag gacgugg-au 4981 --[acugu-- ---------- ---------- ---------- -----acg(- -guaa--)cg 5041 u--------- ---------- ---------- ---------- -----aa-a] uga-acu-cu 5101 cgac-----g cag--gcggg ug-c--cug- -GG-AAGC(G UUGUCUUU-) GCUUUU-|UA 5161 A-cagccu-- --cauuugaa ac-|a-uacc cugg--aauc ----ag(auu au-)cugga- 5221 ga-ua-ggg- uugac----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----uggu-u gGU-----AA 5341 AGCUUCCUG( -gcuuc--)C AGGGAGUC-c ggugcg---c -uccug--ac ugcC-CUUGA 5401 AAA-gaggag -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaaaguu-- ---------- ----guuauu u-gc-acc-- cc-uggCCGU 5581 A|CC--AUUA ACC(GCAUCA )GG|UCU-CC AAGGU(UAGC A)GCCUCU-| GGUCG-||A- 5641 UA-G--AAGA AA-GUAG-AU A-AGGGAAGU CGGCAA-AAU -GGAUCCGUA AC(UUCG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- ------------ -------CUC AGAACU|G(- --GAG)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--UG G|CCG(---- 6661 caaa)CGG-- ---------- --U-GUUGAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---ugugau- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUUAA 6781 C|GGC|GGAC GU(AAC-UAU G)ACGUUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GUGCAUG AAUGGAUUAA UGAGAUUCCC ACUGU-CCCU AUCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCG -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCC G---ACU-UU |GUGGAAC-G CUUGGGGGGU 7021 GUAGCAUAGG UGGGAGC--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -UUCG)---- 7141 ---------G C-GAUCGUGA AA-UACCACU |ACCCUCAG- -UGUCG-UUU UACUUAu--- 7201 ---------- ---------| --a GACAU-AGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (GAAACAAUA GC-)GCAG-G U|G|U|CCU- AAGGC-AAGC |UCAAU-GAG 7621 -A(ACA---- GAAA)UCUCA UGUUGA|CC( A|A--AAGG) GGAAAAG-CU U-GCUUGAUU 7681 -UUGAUUU(u c--aguac-- )GAAUACAAA CUGU(-GAAA )GCAUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -GUC-UGA(- -gaaa-c--u u---)----- ---------- 7861 -----UCA|G CUAGAG-GUG UC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-AGACG(CA -GA-)AGUCU CAAA-GUGU| CGGAU(UGUU C)ACCCGCCA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-a<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->uugga ua-cu-gc-G ACAGUAAUCC AACU(UAGUA 8281 C(GAGA)GGA AC-)AGUUGG U|UCAGAUAC UUGGUUAAUG CGG|-CUAGC U(GAAA)AGC 8341 UAGUGCCGCG A-CGCUACC- AU-CUGU--G GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCA-U GCUG--gcua agca--gugu u<--ucucau cgccucau-u uguu-acuug 8461 cauguuuuuu -uagugccuc uugugcacaa ca-------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- -ucucaccaa cguccuc-ug cggcacggaa 8641 -gggcgauaa ucgcaa-uuu c-c-ca-cau uuggggcgc> --|------- ---------- 8701 ----uacauc |cauug(-ca gacga)cu-u uggc-----g c-a|accagg uauuguaagu 8761 gc-gagagua gg----(cuu -g-------- ---------- ---------- ---------- 8821 ----)---uc cuacgauc-c ac-|uaagau u|uag--ccu g--cgu-u-g ca--cga-ug 8881 uguu-|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS I.felis 9262 bp RNA RNA 17-JUL-1998 DEFINITION Isospora felis.; . ACCESSION U85705 KEYWORDS . SOURCE Isospora felis. ORGANISM Isospora felis. REFERENCE 1 (bases 1 to 3227) AUTHORS Amaro,N., Johnson,A.M. and Luton,K. TITLE Phylogeny of the Apicomplexa as determined from 28S rRNA sequence comparisons JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 3227) AUTHORS Amaro,N., Johnson,A.M. and Luton,K. TITLE Direct Submission JOURNAL Submitted (16-JAN-1997) Cell and Molecular Biology, University of Technology, Sydney, Westbourne St., Gore Hill, NSW 2065, Australia STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U85705 BASE COUNT 832 a 658 c 917 g 820 t 6035 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~U 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UU AUUAAG-C-G G-AGGAGA-- --AGAAAAU( 541 AAC-A)AU-G AU|CCCCUCA GU---AAC(G GCGA)GUG-A A------CGG GGGCc----- 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------a aguggaaauc g-g------a 781 gguucu(uga uu-)gagc-- cu-----ucg acuugua--- ----gccucg agagg-cgcu 841 gccagugg-a gg-c------ ---------- ---------- ---------- gcaga-g--- 901 ----auaa-- --g-uuu-c( u-(uggaaa- )a)gaa-c-- ---------- --------GU 961 --|C(AGA)G |AGGG-(UGA GAAU)-CCCG UC|--cuu-g -cucugc-gu u----uugug 1021 guccacgua- cgguacgc-c uuuaua---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGCGUU CAU(----CG 1141 GGAU)UUGAG CGCAAA---- auGUGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 AUAAGUUU-- ---------- ---------- ---------- )CAC-AUAAA GCU----AAA 1381 UA-------- ---------- UUGGC-GCGA GACCGAUAGC AAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAUG -AAA-AGUUC UUU(gg-aa- )AGAG-AGUU --AAAAGUGC C-UGAAAU-U 1501 GCUGG-AAA< gg---aagcg auuggaacuu ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---guuucau 1861 uccaaugagu gaggcuggug uagc------ ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---auug--a ucccucugcu 2221 uuucccacuc uuuuacggau gg-ga-g-gg uagggg-uug gcauuagaug ugagaccugu 2281 ggaucucuuu ggag-a-ggu ca-gcaucag -u-uacgaag -aagggauuc cgggcggaaa 2341 agguaggu-- ucccugcgg- acugcuuuau aguuucgucu ggcggcuuuc uuuguggcug 2401 gaaugugauu ccga-gu--u --cgggccac acu(-uucg) aguacucgaa uucu------ 2461 ---------- ---------- ---------- ---------- ---------- ---------g 2521 ugau-gcu-- --------ga cag-ucac-g guuucaaccg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUAUGU GCAAGUAu-- gcggg----( ----u-gcca 2641 gu)------- ---------- ---c-cugu- ---------- ---aUGCGUA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------gag uaggga--g- ---uug---- 2941 ---------- ---------- ---------- ---------- ----ggug-- --------cg 3001 cugccgcu-- ---------- ---------- ---------- ------ccuc --gcaccuac 3061 g--------- ---------- ---------- ---------- -------acc ga-cc-acga 3121 uc-(u-ca-- -)-gagaga- -ggu-uugag u]-------- ---------U AUAGCAUAU- 3181 -CUG-UUAGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- GG|U-AGAAU GAAGUCAGGG 3241 (GAAA----- -----)CCCU GAU-GGAGGU UCG-UA---G CG-AUACUGA (CGUGCAAA) 3301 UCG-U-UCGU CAAACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUUCUUC CGAAGUUUCU --(CUCA)GG 3421 AUAGC-UGGA -GUUu--|-- -|-ga----- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------u 3661 u-aguUUUAU -C|AGG--UA AA-GCGAAUG AUUAGAGGc- -----aucgg gg-cg-(ugu 3721 ---)-cgccc u-cga-|CCU AUUC-UCAAA CUUUA-AAUG |GGUAAGauc -ca-gcggu- 3781 u-acuucauu g--aacugcu gggauu---- ---------- ---------- ---------- 3841 ---------- ---------- ----AAUa-u g|AA-CUCCA -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGAGG(GA- UGCU)CCU-- AACGCUU--- GGUUAAG--G 3961 U|GCCA-AAA U-G--CU-CG CUCAU-ca-- --------ga uaccau---- -AAAAGGUGU 4021 U--GGUUCAU UUUGACA-GC AGGACGGUGG UC(AUGG-AA GUC)GAAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAACC AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- GAAGCGGGc| U|-------- --ACCGAU-- --ACCAGGC| (- -----)-gua gcaau-gAGU AGGA------ 4441 --AGA|-CG- UG-GG-GA-- --------u- -c-g-uga-- c------GAA GCGU----UC 4501 G--GC(GUAA G)CCU-GCG- UGG|A-ACG| G--UCUCUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GACUGAAGU G-GAG|AAGG GUU|CCAUGU GA-ACA(-GC AAU)UG|GAC 4681 AUGGGUUAGC |-CGG-UCCU AAGC------ -------<-- --gauag-c- -uuaa--cug 4741 cgua-----g acgucagguu ucugguaaa- ---------- --ccucg-cu -uc------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----GC-GAA AGGGA-GU-C GGG(UUAAUA UU-)CCCGA| -GC----cag gacgugg-au 4981 --[acugu-- ---------- ---------- ---------- -----acg(- -guaa--)cg 5041 u--------- ---------- ---------- ---------- -----aa-g] uga-acuucu 5101 cgac-----g cag--gcagg ug-c-uccg- -GG-AAGC(G UUGUCUUU-) GCUUUU-|UA 5161 A-cagccu-- --ca-aacuu au-|a-uacc cugg--aaac ----ag(uuu ag-)cugga- 5221 ga-ua-ggg- uuggc----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----uggc-u gGU-----AG 5341 AGCACCUUG( -guuuc--)C AAGGUGUC-c ggugcg---c -uccug--ac ugcC-CUUGA 5401 AAA-gaggag -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaaaauu-- ---------- ----guuauu u-gc-acc-- cc-uggCCGU 5581 A|CC--AAUA ACC(GCAUCA )GG|UCU-CC AAGGU(UAGC A)GCCUCU-| GGUCG-||A- 5641 UA-G--AAUA AU-GUAG-AU A-AGGGAAGU CGGCAA-AAU -AGAUCCGUA AC(UUCG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- ------------ -------CUC AGAACU|G(- --GAG)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--UG G|CCA(---- 6661 aaau)UGG-- ---------- --U-GUUGAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---ugugau- ----(gaaa) -----uucaa ----UCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU AUCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCC G---ACU-UU |GUGAAAUGA CUUAGGAGGU 7021 GUAGCAUAAG UGGGAGC--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -UUCG)---- 7141 ---------G C-GCUCGUGA AA-UACCACU |ACUCUUAA- -UGUCG-UUU UACUUAu--- 7201 ---------- ---------| --a GACAC-AGUC A-GGUU-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (GAAACAAUA GC-)GCAG-G U|G|U|CCU- AAGGC-AAGC |UCAAU-GAG 7621 -A(ACA---- GAAA)UCUCA UGUUGA|CC( A|A--AAGG) GGAAAAG-CU U-GCUUGAUU 7681 -UUGAUUU(u c--aguac-- )GAAUACAAA CUGU(-GAAA )GCAUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -GUC-UGA(- -gaaa-c--u u---)----- ---------- 7861 -----UCA|G CUAGAG-GUG UC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-AGACG(CA -GA-)AGUCU CAAA-GUGU| CGGAU(UGUU C)ACCCGCCA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA--<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->uugga ua-cu-gc-G ACAGUAAUCC AACU(UAGUA 8281 C(GAGA)GGA AC-)AGUUGG G|UCGGAUAC UUGGUAAAUG CGG|-CUAGC U(GAAA)AGC 8341 UAGUGC-GCG A-CGCUACC- AU-CCGU--U GGAUUAUGAC U(GAACGCCU C-U-A)AGU~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~~ ~~~~~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS N.caninum 9262 bp RNA RNA 02-MAY-1998 DEFINITION Neospora caninum.; . ACCESSION AF0019 6 KEYWORDS . SOURCE Neospora caninum. ORGANISM Neospora caninum. REFERENCE 1 (bases 1 to 3499) AUTHORS Ellis,J.T. and Amoyal,G. TITLE Neospora caninum large subunit ribosomal DNA JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 3499) AUTHORS Ellis,J.T. and Amoyal,G. TITLE Direct Submission JOURNAL Submitted (01-MAY-1997) Cell & Molecular Biology, University of Technology Sydney, Westbourne, Gore Hill, NSW 2065, Australia STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF001946 BASE COUNT 870 a 734 c 937 g 958 t 5763 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~uuuauc )--aggccug aaaucagg-c gAG----GUU 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UU AUUAAG-C-G G-AGGAGA-- --AGAAAAU( 541 AAC-U)AU-G AU|UCCCUUA GU---AAC(G GCGA)GUG-A A-----CUGG GAUC------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------a aguggaaauc aac------- 781 ugcuc-(uuc acu)gagc-- u-----guug acuugua--- ----gccucg agagg-cguu 841 accagugg-a ag-c------ ---------- ---------- ---------- gcagg-g--- 901 ----uuaa-- ----uuu-c( u-(ugggaa- )a)gaa-c-- ---------- --------AU 961 --|C(AUA)G |AGGG-(UGA GAAU)-CCCG UC|--cuuc- -cccugc-uu u-----uuug 1021 uuccacgua- cgguacgc-u uuuaua---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGCGUU CAU(----CG 1141 GGAU)UUGAG CGCAAA---- auGUGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAGGUUU-- ---------- ---------- ---------- )CAC-AUAAA GCU----AAG 1381 UA-------- ---------- CUGGC-GCGA GACCGAUAGC AAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAUG -AAA-AGUUC UUU(gg-aa- )AGAG-AGUU --AAAAGUGC C-UGAAAU-U 1501 GCUGA-AAA< gg---aagcg auugggaccu uuucgauu-c caagaagug- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------c cgccgguuug cca--ucgau 2221 cccuuugccu ucucucucu- caccagguu- -uaggcuuug guuucucgau guauu-uccg 2281 guucaucuuu uuggagaggu ca-gcaucag cuacucggaa uugau(uucg -)uucaaaga 2341 agguaggucc cucgugga-- -cccuuauau cuuuguucuu uccuuuuccu ---uguggcu 2401 g-aggagugu ucuu-guuuc --cgagcucc acu(-uucg) aguacucggu uucu------ 2461 ---------- ---------- ---------- ---------- ---------- ---------g 2521 ugau-gcu-- --------gg cuu-aauc-g guuccaaccg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUAUGU GCGAGUAu-- gcggg----( ----u-uuua 2641 cu)------- ---------- ---c-cugu- ---------- ---aUGCGCA AU(-AAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------gag uaggga--ga uuuuggc--- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----uuu--- ----)----- ---------- gccauucuuc --gcaccuac 3061 g--------- ---------- ---------- ---------- -------acc -a-cc-acga 3121 uc-(u-cu-- -)-gagaga- -ggu-uugag u]-------- ---------U GGAGCAUAU- 3181 -CUG-UUAGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AG|U-AGAAU GAAGUCAGGG 3241 (GAAA----- -----)CCCU GAU-GGAGGU UCG-UA---G CG-AUACUGA (CGUGCAAA) 3301 UCG-U-UCGU CAAACUUGGG U-UAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUUCUUC CGAAGUUUCU --(CUCA)GG 3421 AUAGC-UGGA -GUUu--|-- -|-ug----- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------u 3661 u-aguUUUAU -C|AGG--UA AA-GCGAAUG AUUAGAGGc- -----aucgg gg-g--(cgc 3721 gu-)--cgcc u-cga-|CCU AUUC-UCAAA CUUU--AAUG |GGUAAGa-c -ca-guggu- 3781 u-acuucauu g--aacugcu gggauu---- ---------- ---------- ---------- 3841 ---------- ---------- ----AAUa-u g|AA-C-CCA -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGAGG(GA- UGCU)CCU-- AACGCUU--- GGUUAAG--G 3961 U|GCCA-AAA U-G--CU-CG CUCAU-ca-- --------ga uaccau---- -AAAAGGUGU 4021 U--GGUUCAU UUUGACA-GC AGGACGGUGG UC(AUGG-AA GUC)GAAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAACC AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- GAAGCGGgc| u|-------- --ACCGAU-- --ACCAGGC| (- -----)-gua gcaau-gAGU AGGA------ 4441 --AGA|-CG- UG-GG-GA-- --------u- -u-g-uga-- c------GAA GCGU---ucg 4501 ---gc(guaa -)gccUGCG- UGG|A-ACA| G--UCUCUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GACUGAAGU G-GAG|AAGG GUU|CCAUGU GA-ACA(-GC AAU)UG|GAC 4681 AUGGGUUAGC |-CGG-UCCU AAGC------ -------<-- --gacag-c- -uuaa--cug 4741 cgua-uacgu u--------- -aggu-uuc- -------uuu -accucguuu c--------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----GC-GAA AGGGA-AU-C GGG(UUAAUA UU-)CCCGA| -GC----cag gacgugg-au 4981 --[acugu-- ---------- ---------- ---------- -----acg(- -guaa--)cg 5041 u--------- ---------- ---------- ---------- -----aa-g] u---acuccu 5101 cgac-----g cag--gcagg ug-c-uccg- -GG-AAGC(G UUGUCUUU-) GCUUUU-|UA 5161 A-cagccuuu ucuu------ uua|ua-c-c cugg--aauc ----ag(uuu ag-)cugga- 5221 ga-ua-ggg- uuagc----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----uggc-u gGU-----AG 5341 AGCACCUUG( -guuuc--)C AAGGUGUC-c ggugcg---c -uccug--ac ugcC-CUUGA 5401 AAA-gaggag -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaaaguu-- ---------- ----guuauu u-gc-acc-- cc-uggCCGU 5581 A|CC--AAUA ACC(GCAUCA )GG|UCU-CC AAGGU(UAGU A)GCCUCU-| GGUCG-||A- 5641 UA-G--AAUA AG-GUAG-AU A-AGGGAAGU CGGCAA-AAU -AGAUCCGUA AC(UUCG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- ------------ -------CUC AGAACU|G(- --GAG)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--UG G|CCA(---- 6661 uaac)UGG-- ---------- --U-GUUGAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---ugugau- ----(gaaa) -----uucaa ----UCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU AUCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCC G---ACU-UU |GUGAAAUGA CUUAGGAGGU 7021 GUAGCAUAAG UGGGAGC--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -UUCG)---- 7141 ---------G C-GCUCGUGA AA-UACCACU |ACUCUUAA- -UGUCG-UUU UACUUAu--- 7201 ---------- ---------| --a GACAC-AGUC A-GGUU-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (GAAA-AAUA GC-)GCAG-G U|G|U|CCU- AAGGC-AAGC |UCAAU-GAG 7621 -A(ACA---- GAAA)UCUCA UGUUGA|CC( A|A--AAGG) GGAAAAG-CU U-GCUUGAUU 7681 -UUGAUUU(u c--aguac-- )GAAUACAAA CUGU(-GAAA )GCAUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -GUC-UGA(- -gaaa-c--u u---)----- ---------- 7861 -----UCA|G CUAGAG-GUG UC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-AGACG(CA -GA-)AGUCU CAAA-GUGU| CGGAU(UGUU C)ACCCGCCA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-C<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->-uuga ua-cu-gc-G ACAGUAAUCC AACU(UAGUA 8281 C(GAGA)GGA AC-)AGUUGG G|UCGGAUAC UUGGUAAAUG CGG|-CUAGC U(GAAA)AGC 8341 UAGUGCCGCG A-CGCUACC- AU-CCGU--U GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCA-U GCUG--gaua ugca--gugu u<--auucac cgccuccu-c u-uu-ucaug 8461 caaugauaca -g-cc-u-uu ggcccugcu- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- -ucucaucaa agcccuucgc uucaugcuuu 8641 ugggcgagaa ucucaa-uuu c-u-aa-cau uggagguga> --|------- ---------- 8701 ----uaca-c |cauug(-ca gacga)cu-u uguu-----g c-a|accggg uauuguaagu 8761 au-gagagua gc----(uug -u-------- ---------- ---------- ---------- 8821 ----)----c cuacgauc-u ac-|uaagau u|uuu--ccu g--cgu-u-g uu--cga-ug 8881 uggcc|augg cgauug|caa augcggagug cacgugc~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS S.capracan 9262 bp RNA RNA 17-JUL-1998 DEFINITION Sarcocystis capracanis.; . ACCESSION AF012885 KEYWORDS . SOURCE Sarcocystis capracanis. ORGANISM Sarcocystis capracanis. REFERENCE 1 (bases 1 to 3461) AUTHORS Amaro,N.A., Luton,K., Tenter,A.M. and Johnson,A.M. TITLE sequence comparisons Phylogeny of the Apicomplexa as determined from 28S rRNA gene JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 3461) AUTHORS Amaro,N.A., Luton,K., Tenter,A.M. and Johnson,A.M. TITLE Direct Submission JOURNAL Submitted (08-JUL-1997) Cell and Molecular Biology, University of Technology, Sydney, Westbourne Street, Sydney, NSW 2065, Australia STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF012885 BASE COUNT 1005 a 613 c 933 g 909 t 5802 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~U 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UU AUUAAG-C-G G-UGGAAG-- --AGAAAAU( 541 AAC-A)AU-G AU|UCCCUUA GU---AAC(G GCGA)GUG-A A-----GAGG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------a aguggaaauc gga------- 781 gauac-(uug aau)ggau-- c-----uucg aauugua--- ----gccucg agaag-cguu 841 accagugg-a gg-c------ ---------- ---------- ---------- guagg-g--- 901 ----ugaa-- --g-uuu-c( u-(uggaag- )a)gaa-c-- ---------- --------AU 961 --|C(GRA)G |AGGG-(UGA GAGU)-CCCG UA|--aaug- -cccuauguu guuaagacgg 1021 uuccacgaa- cgguacgu-u uuuaua---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGCGUU CAU(----CG 1141 GGAU)UUGAG CGCAAA---- auGUGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAGUUU-- ---------- ---------- ---------- )CAC-AUAAA GCU----AAA 1381 UA-------- ---------- GAGGC-GCGA GACCGAUAGC AAAC-AAGUA CC(GUGA)-- 1441 G-GAAAGAUG -AAA-AGUUC UUU(gg-aa- )AGAG-AGUU --AAAAGUGC C-UGAAAU-U 1501 GCUGA-AAA< gg---aagcg auuggaaccu agaggaau-c uaa------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- --------ua ugugaacguc 1861 uugggacauc gaauccugug agcuucaacu ccguagaaag agggaagcuu guggagaugg 1921 ugugugaaca acacacuaau ga-------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 --------ag guaauagaug uugaagaugu ggaucauauu ggagagguca gcaugaguug 2281 gagaagaagg auccaguaau gcagaaggua gguuccuugu ggacuguauu acagaugcau 2341 uacuacaaaa uagacauuc- uacuccgacu gauaagaggc guauauguaa uaauggauau 2401 acggccgcac acucauaugg c-guuuccac gcu(guaug) aguacucgau ucu------- 2461 ---------- ---------- ---------- ---------- ---------- ---------g 2521 ugau-gcu-- --------ga cuagaau--g guuucaaccg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUAUGU GCGAGUAu-- gcggg----( ----u-ggca 2641 aa)------- ---------- ---c-cugu- ---------- ---aUGCaga au(gaaa)gu 2701 aa[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------gag uaaggaaaag uguaauagga 2941 g--------- -ucguugaaa agcgauucuu ugc------- ---------- ---------- 3001 ---------- ----uuu--- ---------- ---------- gc--a-cuua --cgac---c 3061 g--------- ---------- ---------- ---------- -------acc -a-ugaucua 3121 ---ua-uuau -)-gagaga- -ggu-uugag u]-------- ---------U GAAGCAUAU- 3181 -CUG-UUAGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AG|U-AGAAU GAAGUCA-GG 3241 (GAAA----- -----)CCCU GAU-GGAGGU UCG-UA---G CG-AUACUGA (CGUGCAAA) 3301 UCG-U-UCGU CAAACUUGGG UAUAG-G--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUUCUUC CGAAGUUUCU --(CUCA)GG 3421 AUAGC-UGGA -GUUu--|-- -|-ga----- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------u 3661 u-aguUUUAU -C|AGG--UA AA-GCGAAUG AUUAGAGGc- -----aucgg gggc--(gca 3721 au-)--gccc u-cga-|CCU AUUC-UCAAA CUUUA-AAUG |GGUAAGauc -ca-auggu- 3781 u-acuu---- ---------- ---------- ---agauaua ugaacuguug ggguua--au 3841 ---------- ---------- -----auaga a|GA-CUCCA -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGAGG(GA- UGCU)CCU-- AACGCAU--- GGUUAAG--G 3961 U|GCCU-AAA U-G--CU-CG CUCAU-ga-- --------ga uaccau---- -AAAAGGUGU 4021 U--GGUUCAU UUUGACA-GC AGGACGGUGG UC(AUGG-AA GUC)GAAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAACC AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- GAAGCGGgu| u|-------- --ACCGAU-- --ACCAAGC| (- -----)-gua gugau-gAGU AGGA------ 4441 --AGA|-CG- UG-GA-GA-- --------u- -u-g-uaa-- a------GAA GCGU---uug 4501 ---gc(guaa -)gccUGCG- UGG|A-ACA| G--UCUCUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GACUGAAGU G-GAG|AAGG GUU|CCAUGU GA-ACA(-GC AAU)UG|GAC 4681 AUGGGUUAGC |-CGG-UCCU AAGU------ -------<-- --gauag-c- -uuaa--cug 4741 cgu---gaga aaguaugagg caug--uuc- -------u-a auuauaaguu agga-uuugc 4801 uucauagauc ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----AC-GAA AGGGA-AU-C GGG(UUAAUA UU-)CCCGA| -GC----cag gacgugg-au 4981 --[ac----- --aaauauau aucgu----- ---------- -----acg(- -guaa--)cg 5041 u--------- ---------- ---------- ---------- -----aa-a] cga-acuccu 5101 caacaacacg cag--gcagg ug-u-cccg- -GG-AAGC(G UUGUCUUU-) GCUUUU-|UA 5161 A-caacuuu- gaaauu---- cug|ua-c-c cuggaauauc ----ag(uuu ag-)cugga- 5221 ga-ua-ggg- uugga----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----uggu-u gGUauu-uuU 5341 AGCACCUUG( -guuuc--)C AAGGUGUC-c ggugcg---c -uccug--ac ugcC-CAUGA 5401 AAA-gaggag -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggagaaug-- ---auu---- ----guuauu u-ac-acc-- cc-uggCCGU 5581 A|CC--AAUA ACC(GCAUCA )GG|UCU-CC AAGGU(GAGU A)GCCUCU-| GGUCA-||A- 5641 UA-G--AAUA AA-GUAG-AU A-AGGGAAGU CGGCAA-AAU -AGAUCCGUA AC(UUCG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- ------------ -------CUC AGAACU|G(- --GAG)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--UG G|CCA(---- 6661 uaaa)UGG-- ---------- --U-GUUGAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---ugugau- ----(gaaa) -----uucaa ----UCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU AUCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGUA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCC G---ACU-UU |GUGAAAUGA CUUAGGAGGU 7021 GUAGAAUAAG UGGGAGC--- ---------- --<------- ---UU----- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -UUCG)---- 7141 ---------G C-GUCCGUGA AA-UACCACU |ACUCUUAA- -UGUUG-UUU UACUUAu--- 7201 ---------- ---------| --a GACAU-AGUC A-GGUU-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (GAAAAAAUA GC-)GCAG-G U|G|U|CCU- AAGGC-AAGC |UCAAU-GAG 7621 -A(ACA---- GAAA)UCUCA UGUCGA|CC( A|A--AAGG) GGAAAAG-CU U-GCUUGAUU 7681 -UUGAUUU(u c--aguac-- )GAAUACAAA CUGU(-GAAA )GCAUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------A UUUUU----- -UUC-UGA(- -gaaa-c--u u---)----- ---------- 7861 -----UCA|G CUAGAG-GUG UC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-AGACG(CA -GA-)AGUCC CAAA-GUGU| CGGAU(UGUU C)ACCCGCCA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA--<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- -------gau gaga>---ga ua-cu-gc-G ACAGUAAUCC AACU(UAGUA 8281 C(GAGA)GGA AC-)AGUUGG U|UCGGAUAC UUGGUAAAUG CGG|-CUAGU U(GAAA)AGC 8341 UAGUGCCGCG A-UGCUACC- AU-CCGU--U GGAUAAUGAC U(GAACGCCU C-U-A)AGU~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~~ ~~~~~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS S.gigantea 9262 bp RNA RNA 17-JUL-1998 DEFINITION Sarcocystis gigantea.; . ACCESSION U85706 KEYWORDS . SOURCE Sarcocystis gigantea. ORGANISM Sarcocystis gigantea. REFERENCE 1 (bases 1 to 3475) AUTHORS Amaro,N., Johnson,A.M. and Luton,K. TITLE complete sequence sequence comparisons Phylogeny of the Apicomplexa as determined from 28S rRNA gene, JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 3475) AUTHORS Amaro,N., Johnson,A.M. and Luton,K. TITLE Direct Submission JOURNAL Submitted (16-JAN-1997) Cell and Molecular Biology, University of Technology, Sydney, Westbourne St., Gore Hill, NSW 2065, Australia STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U85706 BASE COUNT 1016 a 588 c 924 g 947 t 5787 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~U 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UU AUUAAG-C-G G-UGGAGA-- --AGAAAAU( 541 AAC-A)AU-G AU|UCCCUUA GU---AAC(G GCGA)GUG-A A-----GAGG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------a aguggaaauc gga------- 781 gauuc-(uu- guu)gagu-- -gggucuucg aauugua--- ----gccucg agaag-cguu 841 accagugg-a gg-c------ ---------- ---------- ---------- guagg-g--- 901 ----ugaa-- --g-uuu-c( u-(uggaaa- )a)gaa-c-- ---------- --------AU 961 --|C(AGA)G |AGGG-(UGA GAGU)-CCCG UG|--gaug- -cccuauguu g----uuuag 1021 uuccacgaa- cgguacgu-u uuuaua---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGCGUU CAU(----CG 1141 GGAU)UUGAG CGCAAA---- auGUGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAGUUU-- ---------- ---------- ---------- )CAC-AUAAA GCU----AAA 1381 UA-------- ---------- GAGGC-GCGA GACCGAUAGC AAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAUG -AAA-AGUUC UUU(gg-aa- )AGAG-AGUU --AAAAGUGC C-UGAAAU-U 1501 GCUGA-AAA< gg---aagcg auuggaaccu auuagaau-c caa------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- --------ua ugugaacguc 1861 uuauagcauc gaacucucua uuuuuuaacu cuguaaaagg aggaagaaau auggaaggga 1921 ggguaua--- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------u ucuauagaug uagaagauga ggaucauauu ggagagguca gcaucaguug 2281 gaauagaaag acaugauaau gcagaaugua gguuccaugu ggacuguauu auagaugcau 2341 uauuuuuauu aaacuuucg- auuucgacug augcguauau aauaugaugg aauuuucggg 2401 cuacacucac augagauaau a-auauagcu cuu(gugug) aguacucgaa uucu------ 2461 ---------- ---------- ---------- ---------- ---------- ---------g 2521 ugau-gcu-- --------ga cuggaau--g guuucaaccg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUAUGU GCGAGUAu-- gcggg----( ----u-ggca 2641 aa)------- ---------- ---c-cugu- ---------- ---aUGCGua au(gAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------gag uaagga--ga ---------- 2941 ---------- ---------- ---------- ---aguguaa uaucguua-- --------aa 3001 aaauauuaug cuuu------ ---------- ---------- gc--a-cuua --cgac---c 3061 g--------- ---------- ---------- ---------- -------acc -a-ugaucau 3121 guuuu-uuau ga-gagaga- -ggu-uugag u]-------- ---------U GGAGCAUAU- 3181 -CUG-UUAGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AG|U-AGAAU GAAGUCAGGG 3241 (GAAA----- -----)CCCU GAU-GGAGGU UCG-UA---G CG-AUACUGA (CGUGCAAA) 3301 UCG-U-UCGU CAAACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUUCUUC CGAAGUUUCU --(CUCA)GG 3421 AUAGC-UGGA -GUUu--|-- -|-ga----- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------u 3661 u-aguUUUAU -C|AGG--UA AA-GCGAAUG AUUAGAGGc- --ucucucgg gggc--(gca 3721 au-)--gccc u-cga-|CCU AUUC-UCAAA CUUUA-AAUG |GGUAAGauc -ca-auggu- 3781 u-acuuaagu g--aacuguu gggau----- ---------- ---------a uaugga--ua 3841 au-------- ---------- -----auaga a|GA-CUCCA -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGAGG(GA- UGCU)CCU-- AACGCAU--- GGUUAAG--G 3961 U|GCCA-AAA U-G--CC-CG CUCAU-aa-- --------ga uaccau---- -AAAAGGUGU 4021 U--GGUUCAU UUUGACA-GC AGGACGGUGG UC(AUGG-AA GUC)GAAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAAGC AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- GAAGCGGgu| u|-------- --GAUUAU-- --ACCgaua| (- -----)-gua guaau-gAGU AGGA------ 4441 --AGA|-CG- UG-GA-GA-- --------u- -u-g-uga-- a------GAA GCGUuuauua 4501 uuggc(guaa -)gcauaCG- UGG|A-ACA| G--UCUCUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GACUGAAGU G-GAG|AAGG GUU|CCAUGU GA-ACA(-GC AAU)UG|GAC 4681 AUGGGUUAGC |-CGG-UCCU AAGU------ -------<-- --gauagcug aaaugcgugu 4741 cucaagagug ugagggggag ggaguuuua- -------uua cuacuucauc aacu-cucac 4801 aauauuc--- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----GC-GAA AGGGA-AU-C GGG(UUAAUA UU-)CCCGA| -GC----cag gacgugg-au 4981 --[acugu-- ---------- ---------- ---------- -----acg(- -guaa--)cg 5041 u--------- ---------- ---------- ---------- -----aa-a] uga-acuccu 5101 caacugaacg cag--gcagg ug-u-cccg- -GG-AAGC(G UUGUCUUU-) GCUUUU-|UA 5161 A-caacuuuu gaauauu--- cug|ua-c-c cuggaauauc ----ag(uuu ag-)cugga- 5221 ga-ua-ggg- uugga----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----uggu-u gGUauauuAU 5341 AGCACCUUG( -guuuc--)C AAGGUGUC-c ggugcg---c -uccug--ac ugcC-CAUGA 5401 AAA-gaggag -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaagaug-- ---auu---- ----guuauu u-ac-acc-- cc-uggCCGU 5581 A|CC--AAUA ACC(GCAUCA )GG|UCU-CC AAGGU(UAGU A)GCCUCU-| GGUCA-||A- 5641 UA-G--AAUA AA-GUAG-AU A-AGGGAAGU CGGCAA-AAU -AGAUCCGUA AC(UUCG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- ------------ -------CUC AGAACU|G(- --GAG)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--UG G|CCA(---- 6661 uaaa)UGG-- ---------- --U-GUUGAC GCAAUGUG-- AUUUCUG-CC AGU|GCUCUG 6721 AA-UGUCAA- ---ugugau- ----(gaaa) -----uucaa ----UCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU AUCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGUA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCC G---ACU-UU |GUGAAAUGA CUUAGGAGGU 7021 GUAGAAUAAG UGGGAGC--- ---------- --<------- ---cguauu- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -ugcg)---- 7141 ---------G C-GUCGGUGA AA-UACCACU |ACUCUUAA- -UGUUG-UUU UACUUAu--- 7201 ---------- ---------| --a GACAU-AGUC A-GGUU-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (GAAAggAUA GC-)GCAG-G U|G|U|CCU- AAGGC-AAGC |UCAAU-GAG 7621 -A(ACA---- GAAA)UCUCA UGUUGA|CC( A|A--AAGG) GGAAAAG-CU U-GCUUGAUU 7681 -UUGAUUU(u c--aguac-- )GAAUACAAA CUGU(-GAAA )GCAUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------a uuauauugu- -aUC-UGA(- -gaaa-c--u u---)----- ---------- 7861 -----UCA|G CUAGAG-GUG UC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-AGACG(CA -GA-)AGUCU CAAA-GUGU| CGGAU(UGUU C)ACCCGCCA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA--<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- -------uau gaga>---ga ua-cu-gc-G ACAGUAAUCC AACU(UAGUA 8281 C(GAGA)GGA AC-)AGUUGG U|UCGGAUAC UUGGUAAAUG CAG|-CUAGU U(GAAA)AGC 8341 UAGUGCUGCG A-UGCUACC- AU-CCGU--U GGAUAAUGAC U(GAACGCCU C-U-A)AGUa 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~~ ~~~~~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS S.moulei 9262 bp RNA RNA 17-JUL-1998 DEFINITION Sarcocystis moulei.; . ACCESSION AF012884 KEYWORDS . SOURCE Sarcocystis moulei. ORGANISM Sarcocystis moulei. REFERENCE 1 (bases 1 to 3497) AUTHORS Amaro,N.A., Luton,K., Tenter,A.M. and Johnson,A.M. TITLE sequence comparisons Phylogeny of the Apicomplexa as determined from 28S rRNA gene JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 3497) AUTHORS Amaro,N.A., Luton,K., Tenter,A.M. and Johnson,A.M. TITLE Direct Submission JOURNAL Submitted (08-JUL-1997) Cell and Molecular Biology, University of Technology, Sydney, Westbourne Street, Sydney, NSW 2065, Australia STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF012884 BASE COUNT 1016 a 594 c 937 g 950 t 5765 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~U 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UU AUUAAG-C-G G-UGGAGA-- --AGAAAAU( 541 AAC-A)AU-G GU|UCCCUUA GU---AAC(G GCGA)GUG-A A-----GAGG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------a aguggaaauc gga------- 781 gauuc-(uu- guu)gagu-- -gggucuucg aauugua--- ----gccucg agaag-cguu 841 accagugg-a gg-c------ ---------- ---------- ---------- guagg-g--- 901 ----ugaa-- --g-uuc-c( u-(uggaaa- )a)gaa-c-- ---------- --------AU 961 --|C(AGA)G |AGGG-(UGA GAGU)-CCCG UG|--aaug- -cccuauguu g----uugag 1021 uuccacgaa- cgguacgu-u uuuaua---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGCGUU CAU(----CG 1141 GGAU)UUGAG CGCAAA---- auGUGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAGUUU-- ---------- ---------- ---------- )CAC-AUAAA GCU----AAA 1381 UA-------- ---------- GAGGC-GCGA GACCGAUAGC AAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAUG -AAA-AGUUC UUU(gg-aa- )AGAG-AGUU --AAAAGUGC C-UGAAAU-U 1501 GCUGA-AAA< gg---aagcg auuggaaccu auuagaau-c caa------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- --------ua ugugaacguc 1861 uuauagcauc gaacucuaua uuuuuuaacu cuguaaaagg aggaagaaau auggaaggga 1921 ggguauaaua ucauaua--- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ------gaug uagaagauga ggaucauauu ggagagguca gcaucaguug 2281 gaauauagaa agacaugaua augcagaaug uagguuccau guggacugua uuauaggugc 2341 auuauuauua uuaaacuuu- cgauuucgac ugaugcguau auaauaugau ggaucuucgg 2401 gcuacacucu cacauaugag a-uaacucuu cuu(gugug) aguacucgaa uucu------ 2461 ---------- ---------- ---------- ---------- ---------- ---------g 2521 ugau-gcu-- --------ga cuggaau--g guuucaaccg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUAUGU GCGAGUAu-- gcggg----( ----u-ggca 2641 aa)------- ---------- ---c-cugu- ---------- ---aUGCGua au(gaaa)gu 2701 aa[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------gag uaagagaagu guaauaucgu 2941 u--------- -agaaaauau uaugc----- ---------- ---------- ---------- 3001 ---------- ----uuu--- ---------- ---------- gc--a-cuua --cgac---c 3061 g--------- ---------- ---------- ---------- -------acc -a-ugaucau 3121 guuuu-uuua u--gagagag aggu-uugag u]-------- ---------U GGAGCAUAU- 3181 -CUG-UUAGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AG|U-AGAAU GAAGUCAGGG 3241 (GAAA----- -----)CCCU GAU-GGAGGU UCG-UA---G CG-AUACUGA (CGUGCAAA) 3301 UCG-U-UCGU CAAACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUUCUUC CGAAGUUUCU --(CUCA)GG 3421 AUAGC-UGGA -GUUu--|-- -|-ga----- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------u 3661 u-aguUUUAU -C|AGG--UA AA-GCGAAUG AUUAGAGGc- --uuucucgg gggc--(gca 3721 au-)--gccc u-cga-|CCU AUUC-UCAAA CUUUA-AAUG |GGUAAGauc -ca-auggu- 3781 u-acuuaagu g--aacuguu gggau----- ---------- -------aua uggaua--gu 3841 aau------- ---------- -----auaga a|GA-CUCCA -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGAGG(GA- UGCU)CCU-- AACGCAU--- GGUUAAG--G 3961 U|GCCC-AAA U-G--CC-CG CUCAU-aa-- --------ga uaccau---- -AAAAGGUGU 4021 U--GGUUCAU UUUGACA-GC AGGACGGUGG UC(AUGG-AA GUC)GAAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAAGC AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- GAAGCGGgu| u|-------- --GAUUAU-- --ACCgaua| (- -----)-gua guaau-gAGU AGGA------ 4441 --AGA|-CG- UG-GA-GA-- --------u- -u-g-uga-- a------GAA GCGUuuauua 4501 uuggc(guaa -)gcauaCG- UGG|A-ACA| G--UCUCUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GACUGAAGU G-GAG|AAGG GUU|CCAUGU GA-ACA(-GC AAU)UG|GAC 4681 AUGGGUUAGC |-CGG-UCCU AAGU------ -------<-- --gauagcug agaugcgugu 4741 gucaagagug ugaggggggg ggaguuuua- -------uua cugcuucauc aacu-cacaa 4801 uauuc----- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----GC-GAA AGGGA-AU-C GGG(UUAAUA UU-)CCCGA| -GC----cag gacgugg-au 4981 --[acugu-- ---------- ---------- ---------- -----acg(- -guaa--)cg 5041 u--------- ---------- ---------- ---------- -----aa-a] uga-acuccu 5101 caacugaacg cag--gcagg ug-u-cccg- -GG-AAGC(G UUGUCUUU-) GCUUUU-|UA 5161 A-caacuuuu gaauauu--- cug|ua-c-c cuggaauauc ----ag(uuu ag-)cugga- 5221 ga-ua-ggg- uugga----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----uggu-u gGUauauuAU 5341 AGCACCUUG( -guuuc--)C AAGGUGUC-c ggugcg---c -uccug--ac ugcC-CAUGA 5401 AAA-gaggag -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaagaug-- --auuauu-- ----guuauu u-ac-acc-- cc-uggCCGU 5581 A|CC--AAUA ACC(GCAUCA )GG|UCU-CC AAGGU(UAGU A)GCCUCU-| GGUCA-||A- 5641 UA-G--AAUA AA-GUAG-AU A-AGGGAAGU CGGCAA-AAU -AGAUCCGUA AC(UUCG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- ------------ -------CUC AGAACU|G(- --GAG)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--UG G|CCA(---- 6661 uaaa)UGG-- ---------- --U-GUUGAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---ugugau- ----(gaaa) -----uucaa ----UCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU AUCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGUA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCC G---ACU-UU |GUGAAAUGA CUUAGGAGGU 7021 GUAGAAUAAG UGGGAGC--- ---------- --<------- ---cguguaa g--------- 7081 ---------- ---------- ---------- ---------- ------->(- -ugcg)---- 7141 ---------G C-GUCGGUGA AA-UACCACU |ACUCUUAA- -UGUUG-UUU UACUUAc--- 7201 ---------- ---------| --a GACAU-AGUC A-GGUU-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (GAAAGGAUA GC-)GCAG-G U|G|U|CCU- AAGGC-AAGC |UCAAU-GAG 7621 -A(ACA---- GAAA)UCUCA UGUUGA|CC( A|A--AAGG) GGAAAAG-CU U-GCUUGAUU 7681 -UUGAUUU(u c--aguac-- )GAAUACAAA CUGU(-GAAA )GCAUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------a uugucuaua- --UC-UGA(- -gaaa-c--u u---)----- ---------- 7861 -----UCA|G CUAGAG-GUG UC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-AGACG(CA -GA-)AGUCU CAAA-GUGU| CGGAU(UGUU C)ACCCGCCA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA--<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- -------uau gaga>---ga ua-cu-gc-G ACAGUAAUCC AACU(UAGUA 8281 C(GAGA)GGA AC-)AGUUGG U|UCGGAUAC UUGGUAAAUG CAG|-CUAGU U(GAAA)AGC 8341 UAGUGCUGCG A-UGCUACC- AU-CCGU--U GGAUAAUGAC U(GAACGCCU C-U-A)AGU~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~~ ~~~~~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS S.muris 9262 bp RNA RNA 17-JUL-1998 DEFINITION Sarcocystis muris.; . ACCESSION AF012883 KEYWORDS . SOURCE Sarcocystis muris. ORGANISM Sarcocystis muris. REFERENCE 1 (bases 1 to 3295) AUTHORS Amaro,N.A., Luton,K., Tenter,A.M. and Johnson,A.M. TITLE sequence comparisons Phylogeny of the Apicomplexa as determined from 28S rRNA gene JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 3295) AUTHORS Amaro,N.A., Luton,K., Tenter,A.M. and Johnson,A.M. TITLE Direct Submission JOURNAL Submitted (08-JUL-1997) Cell and Molecular Biology, University of Technology, Sydney, Westbourne Street, Sydney, NSW 2065, Australia STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF012883 BASE COUNT 915 a 632 c 911 g 837 t 5967 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~U 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UU AUUAAG-C-G G-UGGAAA-- --AGAAAAU( 541 AAC-A)AU-G AU|UCCCUUA GU---AAC(G GCGA)GUG-A A-----CAGG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------a ggugggaauc --g------- 781 gagau-(uuu --u)gagu-- -gaaucuucg acuugua--- ----uccucg agagg-cguu 841 accagugg-a gg-c------ ---------- ---------- ---------- acagg-g--- 901 ----agaa-- --g-uuu-c( u-(uggaaa- )a)gaa-c-- ---------- --------AU 961 --|C(AGA)G |AGGG-(UGA GAGU)-CCCG UA|--uuug- -cccuguguc a---uuuagg 1021 ucccacgga- cgguacgc-u uuugca---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGCGUU CAU(----CG 1141 GGAU)UUGAG CGCAAA---- auGUGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAGUUU-- ---------- ---------- ---------- )CAC-AUAAA GCU----AAA 1381 UA-------- ---------- UUGGC-GCGA GACCGAUAGC AAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAUG -AAA-AGUUC UUU(gg-aa- )AGAG-AGUU --AAAAGUGC C-UGAAAU-U 1501 GCUGA-AAA< gg---aagcg auuggaaccu uuuagagu-c caa------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- --------ua cgugaaucgc 1861 ucaugacauu gagccccgga caauuucacc augugaaagu ggggaagu-- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- -----guuug ---------- 2221 ------ggua ---------- ----aggu-- --aauagaug aaguggguga ggaucguauu 2281 ggagagguca gcaucaguca cggacggaaa gacccccagu guagcaggua gguuccacgu 2341 gggcugccuu auagcuacc- acuggaaacu uuuccaaugu gacugaagug uacuacuggc 2401 auggaauauu cgggccacac u-ugaauagc aau(auucg) aguacucgag uucu------ 2461 ---------- ---------- ---------- ---------- ---------- ---------g 2521 ugau-gcu-- --------ga ccgaaau--g guuuuaaccg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUAUGU -CGAGUAu-- gcgg-----( ----u-ggca 2641 aa)------- ---------- ---c-cugu- ---------- ---augcgaa au(gaaa)gu 2701 aa[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------gag uaggga---- ---------- 2941 ---------- ---------- ---------- ---uaagggu aacaucgu-- --------ua 3001 aaaagu---- ---------- ---------- ---------- guuaugcuuu --gcaccuac 3061 g--------- ---------- ---------- ---------- -------acc ga-cc-acga 3121 uc-(u-ca-- -)-gagaga- -ggu-uugag u]-------- ---------U GGAGCAUAU- 3181 -CUG-UUAGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- GG|U-AGAAU GAAGUCAGGG 3241 (GAAA----- -----)CCCU GAU-GGAGGU UCG-UA---G CG-AUACUGA (CGUGCAAA) 3301 UCG-U-UCGU CAAACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUUCUUC CGAAGUUUCU --(CUCA)GG 3421 AUAGC-UGGA -GUUu--|-- -|-ua----- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------u 3661 u-aguUUUAU -C|AGG--UA AA-GCGAAUG AUUAGAGGc- -----aucgg gggc--(gua 3721 ag-)--gccc u-cga-|CCU AUUC-UCAAA CUUUA-AAUG |GGUAAGauc -ca-guggu- 3781 u-acuucauu g--aacugcu gggauu---- ---------- ---------- ---------- 3841 ---------- ---------- ----aaua-u g|AA-CUCCA -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGAGG(GA- UGCU)CCU-- AACGCUU--- GGUUAAG--G 3961 U|GCCA-AAA U-G--CU-CG CUCAU-ca-- --------ga uaccau---- -AAAAGGUGU 4021 U--GGUUCAU UUUGACA-GC AGGACGGUGG UC(AUGG-AA GUC)GAAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAACC AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- GAAGCGGgc| u|-------- --ACCGAU-- --ACCAGGC| (- -----)-gua gcaau-gAGU AGGA------ 4441 --AGA|-CG- UG-GA-GA-- --------u- -u-g-uga-- c------GAA GCGU---ucg 4501 ---gc(guaa -)gccCGCG- UGG|A-ACG| G--UCUCUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GACUGAAGU G-GAG|AAGG GUU|CCAUGU GA-ACA(-GC AAU)UG|GAC 4681 AUGGGUUAGC |-CGG-UCCU AAGC------ -------<-- --gauag-c- -uuaa--aug 4741 cgu----gaa aaauagaggu auauuauau- -------g-- -accucauuu c--------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----GC-GAA AGGGA-AU-C GGG(UUAAUA UU-)CCCGA| -GC----cag gaagugg-au 4981 --[acugu-- ---------- ---------- ---------- -----acg(- -guaa--)cg 5041 u--------- ---------- ---------- ---------- -----aa-a] cga-acuccu 5101 cgac-----g cag--gcagg ug-c-cccg- -GG-AAGC(G UUGUCUUU-) GCUUUU-|UA 5161 A-cagccuua uaauu----- cua|ua-c-c cugg--aauc ----ag(uuu ag-)cugga- 5221 ga-ua-ggg- uugga----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----ugac-u gGU-----AU 5341 UGCAUCUUG( -guuuc--)C AAGGUGUC-c ggugcg---c -uccug--ac ugcC-CCUGA 5401 AAA-gaggag -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggagaauu-- ---------- ----gugauu u-gc-acc-- cc-uggCCGU 5581 A|CC--AAUA ACC(GCAUCA )GG|UCU-CC AAGGU(UAGC A)GCCUCU-| GGUCA-||A- 5641 UA-G--AAUA AA-GUAG-AU A-AGGGAAGU CGGCAA-AAU -AGAUCCGUA AC(UUCG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- ------------ -------CUC AGAACU|G(- --GAG)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--UG G|CCA(---- 6661 uaaa)UGG-- ---------- --U-GUUGAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---ugugau- ----(gaaa) -----uucaa ----UCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU AUCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCC G---ACU-UU |GUGAAAUGA CUUAGGAGGU 7021 GUAGAAUAAG UGGGAGC--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -UUCG)---- 7141 ---------G C-GUCCGUGA AA-UACCACU |ACUCUUAA- -UGUCG-UUU UACUUAu--- 7201 ---------- ---------| --a GACAU-AGUC A-GGUU-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (GAAACAAUA GC-)GCAG-G U|G|U|CCU- AAGGC-AAGC |UCAAU-GAG 7621 -A(ACA---- GAAA)UCUCA UGUUGA|CC( A|A--AAGG) GGAAAAG-CU U-GCUUGAUU 7681 -UUGAUUU(u c--aguac-- )GAAUACAAA CUGU(-GAAA )GCAUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -GUC-UGA(- -gaaa-c--u u---)----- ---------- 7861 -----UCA|G CUAGAG-GUG UC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-AGACG(CA -GA-)AGUCU CAAA-GUGU| CGGAU(UGUU C)ACCCGCCA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-A<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->-uuga ua-cu-gc-G ACAGUAAUCC AACU(UAGUA 8281 C(GAGA)GGA AC-)AGUUGG U|UCGGAUAC UUGGUAAAUG CGG|-CUAGU U(GAAA)AGC 8341 UAGUGC-GCG A-UGCUACC- AU-CCGU--U GGAUAAUGAC U(GAACGCCU C-U-A)AGU~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~~ ~~~~~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.gond.P 9262 bp RNA RNA 11-JAN-191 DEFINITION Toxoplasma gondii str. P. ACCESSION No information KEYWORDS No information. SOURCE Toxoplasma gondii str. P. ORGANISM Toxoplasma gondii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X75453 BASE COUNT 908 a 752 c 968 g 997 t 5637 others ORIGIN 1 |--------- ---------- ---------- ----AAAUUU UCAGCAAUGG AUG|UCUUGG 61 |CUCGCGC|A A|-CGAUGAA GGA|CGCA(- -GCGA-AC)U |GC--AAACG CA-augu|[- 121 gaauugcaga auucagugaa u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---cauca|G AUUUCU-GAA Cgc-(aaaug )-g-c|--ac 241 cuu----ggg g(-------- ---------- ---------- -----auauu ---)cucc-- 301 -----uuggu ---acgucug -u-uu-cagu gucu--(--- ---uu----/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------auc )--agaccug aaaucagg-c gAG----GUU 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UU AUUAAG-C-G G-AGGAGA-- --AGAAAAU( 541 AAC-U)AU-G AU|UCCCUUA GU---AAC(G GCGA)GUG-A A-----CCGG GAUC------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------a aguggaaauc aac------- 781 ugcuc-(uuu cc-)gagc-- u-----guug acuugua--- ----gccucg agagg-cguu 841 accagugg-a ag-c------ ---------- ---------- ---------- gcagg-g--- 901 ----uuaa-- --g-uuu-c( u-(ugggaa- )a)gaa-c-- ---------- --------AU 961 --|C(AUA)G |AGGG-(UGA GAAU)-CCCG UC|--cuuc- -cccugcguu u-----uuug 1021 uuccacgua- cgguacgc-u uuuaua---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGCGUU CAU(----CG 1141 GGAU)UUGAG CGCAAA---- auGUGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAGGUUU-- ---------- ---------- ---------- )CAC-AUAAA GCU----AAG 1381 UA-------- ---------- CUGGC-GCGA GACCGAUAGC AAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAUG -AAA-AGUUC UUU(gg-aa- )AGAG-AGUU --AAAAGUGC C-UGAAAU-U 1501 GCUGA-AAA< gg---aagcg auugggaccu uuuugauu-c caagaagug- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------c cgccgguuug cca--ucuau 2221 cccuuugccu ucucucucu- caccagguu- -uaggcuuug guuucuugau guauu-uccg 2281 guucaucuuu uuggagaggu ca-gcaucag cuacucggaa uugau(uucg -)uucaaaga 2341 agguagguuc cuugugga-- -ccguuauau cuuuguucuu uccuuuuccu ---uguggcu 2401 g-aggagugu uccu-guuuc --cgagcucc acu(-uucg) aguacucggu uucu------ 2461 ---------- ---------- ---------- ---------- ---------- ---------g 2521 ugau-gcu-- --------gg cuu-aauc-g guuccaaccg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUAUGU GCGAGUAu-- gcggg----( ----u-uuua 2641 cu)------- ---------- ---c-cugu- ---------- ---aUGCGCA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------gag uaggga--ga uuuuggc--- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----uuu--- ----)----- ---------- gccauucuuc --gcaccuac 3061 g--------- ---------- ---------- ---------- -------acc ga-cc-acga 3121 uc-(u-cu-- -)-gagaga- -ggu-uugag u]-------- ---------U GGAGCAUAU- 3181 -CUG-UUAGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AG|U-AGAAU GAAGUCAGGG 3241 (GAAA----- -----)CCCU GAU-GGAGGU UCG-UA---G CG-AUACUGA (CGUGCAAA) 3301 UCG-U-UCGU CAAACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUUCUUC CGAAGUUUCU --(CUCA)GG 3421 AUAGC-UGGA -GUUu--|-- -|-ug----- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------u 3661 u-aguUUUAU -C|AGG--UA AA-GCGAAUG AUUAGAGGc- -----aucgg ggg---(cgc 3721 g--)---ucc u-cga-|CCU AUUC-UCAAA CUUUA-AAUG |GGUAAGauc -ca-guggu- 3781 u-acuucauu g--aacugcu gggauu---- ---------- ---------- ---------- 3841 ---------- ---------- ----AAUa-u g|AA-CUCCA -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGAGG(GA- UGCU)CCU-- AACGCUU--- GGUUAAG--G 3961 U|GCCA-AAA U-G--CU-CG CUCAU-ca-- --------ga uaccau---- -AAAAGGUGU 4021 U--GGUUCAU UUUGACA-GC AGGACGGUGG UC(AUGG-AA GUC)GAAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAACC AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- GAAGCG-GC| U|-------- --ACCGAU-- --ACCAGGC| (- -----)-gua gcaau-gAGU AGGA------ 4441 --AGA|-CG- UG-GG-GA-- --------u- -u-g-uga-- c------GAA GCGU----UC 4501 G--GC(GUAA -)CGU-GCG- UGG|A-ACA| G--UCCCUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GACUGAAGU G-GAG|AAGG GUU|CCAUGU GA-ACA(-GC AAU)UG|GAC 4681 AUGGGUUAGC |-CGG-UCCU AAGC------ -------<-- --gacca-u- -guaa---cu 4741 gcguauacgu u--------- -aggu-uuc- -------uuu -accucguuu c--------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----GC-GAA AGGGA-AU-C GGG(UUAAUA UU-)CCCGA| -GC----cag gacgugg-au 4981 --[acugu-- ---------- ---------- ---------- -----acg(- -guaa--)cg 5041 u--------- ---------- ---------- ---------- -----aa-g] uga-acuccu 5101 cgac-----g cag--gcagg ug-c-uccg- -GG-AAGC(G UUGUCUUU-) GCUUUU-|UA 5161 A-cagccuu- ------uucu uuu|a-ua-c cugg--aauc ----ag(uuu ag-)cugga- 5221 ga-ua-ggg- uuagc----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----uggc-u gGU-----AG 5341 AGCACCUUG( -guuuc--)C AAGGUGUC-c ggugcg---c -uccug--ac ugcC-CUUGA 5401 AAA-gaggag -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaaaguu-- ---------- ----guuauu u-gc-acc-- cc-uggCCGU 5581 A|CC--AAUA ACC(GCAUCA )GG|UCU-CC AAGGU(UAGU A)GCCUCU-| GGUCG-||A- 5641 UA-G--AAUA AG-GUAG-AU A-AGGGAAGU CGGCAA-AAU -AGAUCCGUA AC(UUCG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- ------------ -------CUC AGAACU|G(- --GAG)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--UG G|CCA(---- 6661 uaac)UGG-- ---------- --U-GUUGAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---ugugau- ----(gaaa) -----uucaa ----UCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU AUCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCC G---ACU-UU |GUGAAAUGA CUUAGGAGGU 7021 GUAGCAUAAG UGGGAGC--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -UUCG)---- 7141 ---------G C-GCUCGUGA AA-UACCACU |ACUCUUAA- -UGUCG-UUU UACUUAu--- 7201 ---------- ---------| --a GACAC-AGUC A-GGUU-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (GAAACAAUA GC-)GCAG-G U|G|U|CCU- AAGGC-AAGC |UCAAU-GAG 7621 -A(ACA---- GAAA)UCUCA UGUUGA|CC( A|A--AAGG) GGAAAAG-CU U-GCUUGAUU 7681 -UUGAUUU(u c--aguac-- )GAAUACAAA CUGU(-GAAA )GCAUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -GUC-UGA(- -gaaa-c--u u---)----- ---------- 7861 -----UCA|G CUAGAG-GUG UC|aGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-AGACG(CA -GA-)AGUCU CAAA-GUGU| CGGAU(UGUU C)ACCCGCCA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-C<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->-uuga ua-cu-gc-G ACAGUAAUCC AACU(UAGUA 8281 C(GAGA)GGA AC-)AGUUGG G|UCGGAUAC UUGGUAAAUG CGG|-CUACG U(GAAA)AGC 8341 UAGUGCCGCG A-CGCUACC- AU-CCGU--U GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCA-U GCUG--gaua ugca--gugu u<--auucac cgccuccu-u uguu-ucaug 8461 caaugauaca -ggcc-ucu- -ggccugcu- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- -ucucaucaa agcccuccgc uucaugcuuu 8641 ugggcgagaa ucucaa-uuu c-u-aa-cau uggagguga> --|------- ---------- 8701 ----uacauc |cauug(-ca gacga)cu-u uguu-----g c-a|accggg uauuguaagu 8761 au-gagagua gg----(cuu -g-------- ---------- ---------- ---------- 8821 ----)----u cuacgauc-u ac-|uaagau u|uuu--ccu g--cgu-u-g uu--cga-ug 8881 ugg--|---- ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.gond.S 9262 bp RNA RNA 11-JAN-191 DEFINITION Toxoplasma gondii. ACCESSION No information KEYWORDS No information. SOURCE Toxoplasma gondii. ORGANISM Toxoplasma gondii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X75430 BASE COUNT 906 a 754 c 971 g 996 t 5635 others ORIGIN 1 |--------- ---------- ---------- ----AAAUUU UCAGCAAUGG AUG|UCUUGG 61 |CUCGCGC|A A|-CGAUGAA GGA|CGCA(- -GCGA-AC)U |GC-GAAACG CA-augu|[- 121 gaauugcaga auucagugaa u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---cauca|G AUUUCU-GAA Cgc-(aaaug )-g-c|--ac 241 cuu----ggg g(-------- ---------- ---------- -----auauu ---)cucc-- 301 -----uuggu ---acgucug -u-uu-cagu gucu--(--- ---uu----/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------auc )--agaccug aaaucagg-c gAG----GUU 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UU AUUAAG-C-G G-AGGAGA-- --AGAAAAU( 541 AAC-U)AU-G AU|UCCCUUA GU---AAC(G GCGA)GUG-A A-----CCGG GAUC------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------a aguggaaauc aac------- 781 ugcuc-(uuu cc-)gagc-- u-----guug acuugua--- ----gccucg agagg-cguu 841 accagugg-a ag-c------ ---------- ---------- ---------- gcagg-g--- 901 ----uuaa-- --g-uuu-c( u-(ugggaa- )a)gaa-c-- ---------- --------AU 961 --|C(AUA)G |AGGG-(UGA GAAU)-CCCG UC|--cuuc- -cccugcguu u-----uuug 1021 uuccacgua- cgguacgc-u uuuaua---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGCGUU CAU(----CG 1141 GGAU)UUGAG CGCAAA---- auGUGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAGGUUU-- ---------- ---------- ---------- )CAC-AUAAA GCU----AAG 1381 UA-------- ---------- CUGGC-GCGA GACCGAUAGC AAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAUG -AAA-AGUUC UUU(gg-aa- )AGAG-AGUU --AAAAGUGC C-UGAAAU-U 1501 GCUGA-AAA< gg---aagcg auugggaccu uuuugauu-c caagaagug- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------c cgccgguuug cca--ucuau 2221 cccuuugccu ucucucucu- caccagguu- -uaggcuuug guuucuugau guauu-uccg 2281 guucaucuuu uuggagaggu ca-gcaucag cuacucggaa uugau(uucg -)uucaaaga 2341 agguagguuc cuugugga-- -ccguuauau cuuuguucuu ucccuuuccu ---uguggcu 2401 g-aggagugu uccu-guuuc --cgagcucc acu(-uucg) aguacucggu uucu------ 2461 ---------- ---------- ---------- ---------- ---------- ---------g 2521 ugau-gcu-- --------gg cuu-aauc-g guuccaaccg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUAUGU GCGAGUAu-- gcggg----( ----u-uuua 2641 cu)------- ---------- ---c-cugu- ---------- ---aUGCGCA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------gag uaggga--ga uuuuggc--- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----uuu--- ----)----- ---------- gccauucuuc --gcaccuac 3061 g--------- ---------- ---------- ---------- -------acc ga-cc-acga 3121 uc-(u-cu-- -)-gagaga- -ggu-uugag u]-------- ---------U GGAGCAUAU- 3181 -CUG-UUAGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AG|U-AGAAU GAAGUCAGGG 3241 (GAAA----- -----)CCCU GAU-GGAGGU UCG-UA---G CG-AUACUGA (CGUGCAAA) 3301 UCG-U-UCGU CAAACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUUCUUC CGAAGUUUCU --(CUCA)GG 3421 AUAGC-UGGA -GUUu--|-- -|-ug----- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------u 3661 u-aguUUUAU -C|AGG--UA AA-GCGAAUG AUUAGAGGc- -----aucgg ggg---(cgc 3721 g--)---ucc u-cga-|CCU AUUC-UCAAA CUUUA-AAUG |GGUAAGauc -ca-guggu- 3781 u-acuucauu g--aacugcu gggauu---- ---------- ---------- ---------- 3841 ---------- ---------- ----AAUa-u g|AA-CUCCA -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGAGG(GA- UGCU)CCU-- AACGCUU--- GGUUAAG--G 3961 U|GCCA-AAA U-G--CU-CG CUCAU-ca-- --------ga uaccau---- -AAAAGGUGU 4021 U--GGUUCAU UUUGACA-GC AGGACGGUCG UC(AUGG-AA GUC)GAAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAACC AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- GAAGCG-GC| U|-------- --ACCGAU-- --ACCAGGC| (- -----)-gua gcaau-gAGU AGGA------ 4441 --AGA|-CG- UG-GG-GA-- --------u- -u-g-uga-- c------GAA GCGU----UC 4501 G--GC(GUAA -)CGU-GCG- UGG|A-ACA| G--UCUCUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GACUGAAGU G-GAG|AAGG GUU|CCAUGU GA-ACA(-GC AAU)UG|GAC 4681 AUGGGUUAGC |-CGG-UCCU AAGC------ -------<-- --gacca-u- -guaa--cug 4741 cgua-uacgu u--------- -aggu-uuc- -------uuu -accucguuu c--------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----GC-GAA AGGGA-AU-C GGG(UUAAUA UU-)CCCGA| -GC----cag gacgugg-au 4981 --[acugu-- ---------- ---------- ---------- -----acg(- -guaa--)cg 5041 u--------- ---------- ---------- ---------- -----aa-g] uga-acuccu 5101 cgac-----g cag--gcagg ug-c-uccg- -GG-AAGC(G UUGUCUUU-) GCUUUU-|UA 5161 A-cagccuu- ------uucu uuu|a-ua-c cugg--aauc ----ag(uuu ag-)cugga- 5221 ga-ua-ggg- uuagc----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----uggc-u gGU-----AG 5341 AGCACCUUG( -guuuc--)C AGGGUGUC-c gguccg---c -uccug--ac ugcC-CUUGA 5401 AAA-gaggag -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaaaguu-- ---------- ----guuauu u-gc-acc-- cc-uggCCGU 5581 A|CC--AAUA ACC(GCAUCA )GG|UCU-CC AAGGU(UAGU A)GCCUCU-| GGUCG-||A- 5641 UA-G--AAUG AG-GUAG-AU A-AGGGAAGU CGGCAA-AAU -AGAUCCGUA AC(UUCG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- ------------ -------CUC AGAACU|G(- --GAG)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--UG G|CCA(---- 6661 uaac)UGG-- ---------- --U-GUUGAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---ugugau- ----(gaaa) -----uucaa ----UCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU AUCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCC G---ACU-UU |GUGAAGUGA CUUAGGAGGU 7021 GUAGCAUAAG UGGGAGC--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -UUCG)---- 7141 ---------G C-GCUCGUGA AA-UACCACU |ACUCUUAA- -UGUCG-UUU UACUUAu--- 7201 ---------- ---------| --a GACAC-AGUC A-GGUU-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (GAAACAAUA GC-)GCAG-G U|G|U|CCU- AAGGC-AAGC |UCAAU-GAG 7621 -A(ACA---- GAAA)UCUCA UGUUGA|CC( A|A--AAGG) GGAAAAG-CU U-GCUUGAUU 7681 -UUGAUUU(u c--aguac-- )GAAUACAAA CUGU(-GAAA )GCAUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -GUC-UGA(- -gaaa-c--u u---)----- ---------- 7861 -----UCA|G CUAGAG-GUG UC|aGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-AGACG(CA -GA-)AGUCU CAAA-GUGU| CGGAU(UGUU C)ACCCGCCA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-C<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->-uuga ua-cu-gc-G ACAGUAAUCC AACU(UAGUA 8281 C(GAGA)GGA AC-)AGUUGG G|UCGGAUAC UUGGUAAAUG CGG|-CUAGC U(GAAA)AGC 8341 UAGUGCCGCG A-CGCUACC- AU-CCGU--U GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCA-U GCUG--gaua ugca--gugu u<--auucac cgccuccu-u uguu-ucaug 8461 caaugauaca -ggcc-ucu- -ggccugcu- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- -ucucaucaa agcccuccgc uucaugcuuu 8641 ugggcgagaa ucucaa-ucu c-u-aa-cau uggagguga> --|------- ---------- 8701 ----uacauc |cauug(-ca gacga)cu-u uguu-----g c-a|accggg uauuguaagu 8761 au-gagagua gg----(cuu -g-------- ---------- ---------- ---------- 8821 ----)----u cuacgauc-u ac-|uaagau u|uuu--ccu g--cgu-u-g uu--cga-ug 8881 ugg--|---- ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.gond.RH 9262 bp RNA RNA 11-JAN-191 DEFINITION Toxoplasma gondii. ACCESSION No information KEYWORDS No information. SOURCE Toxoplasma gondii. ORGANISM Toxoplasma gondii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X75429 BASE COUNT 905 a 754 c 971 g 997 t 5635 others ORIGIN 1 |--------- ---------- ---------- ----AAAUUU UCAGCAAUGG AUG|UCUUGG 61 |CUCGCGC|A A|-CGAUGAA GGA|CGCA(- -GCGA-AC)U |GC-GAAACG CA-augu|[- 121 gaauugcaga auucagugaa u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---cauca|G AUUUCU-GAA Cgc-(aaaug )-g-c|--ac 241 cuu----ggg g(-------- ---------- ---------- -----auauu ---)cucc-- 301 -----uuggu ---acgucug -u-uu-cagu gucu--(--- ---uu----/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------auc )--agaccug aaaucagg-c gAG----GUU 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UU AUUAAG-C-G G-AGGAGA-- --AGAAAAU( 541 AAC-U)AU-G AU|UCCCUUA GU---AAC(G GCGA)GUG-A A-----CCGG GAUC------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------a aguggaaauc aac------- 781 ugcuc-(uuu cc-)gagc-- u-----guug acuugua--- ----gccucg agagg-cguu 841 accagugg-a ag-c------ ---------- ---------- ---------- gcagg-g--- 901 ----uuaa-- --g-uuu-c( u-(ugggaa- )a)gaa-c-- ---------- --------AU 961 --|C(AUA)G |AGGG-(UGA GAAU)-CCCG UC|--cuuc- -cccugcguu u-----uuug 1021 uuccacgua- cgguacgc-u uuuaua---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGCGUU CAU(----CG 1141 GGAU)UUGAG CGCAAA---- auGUGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAGGUUU-- ---------- ---------- ---------- )CAC-AUAAA GCU----AAG 1381 UA-------- ---------- CUGGC-GCGA GACCGAUAGC AAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAUG -AAA-AGUUC UUU(gg-aa- )AGAG-AGUU --AAAAGUGC C-UGAAAU-U 1501 GCUGA-AAA< gg---aagcg auugggaccu uuuugauu-c caagaagug- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------c cgccgguuug cca--ucuau 2221 cccuuugccu ucucucucu- caccagguu- -uaggcuuug guuucuugau guauu-uccg 2281 guucaucuuu uuggagaggu ca-gcaucag cuacucggaa uugau(uucg -)uucaaaga 2341 agguagguuc cuugugga-- -ccguuauau cuuuguucuu uccuuuuccu ---uguggcu 2401 g-aggagugu uccu-guuuc --cgagcucc acu(-uucg) aguacucggu uucu------ 2461 ---------- ---------- ---------- ---------- ---------- ---------g 2521 ugau-gcu-- --------gg cuu-aauc-g guuccaaccg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UCACAUAUGU GCGAGUAu-- gcggg----( ----u-uuua 2641 cu)------- ---------- ---c-cugu- ---------- ---aUGCGCA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------gag uaggga--ga uuuuggc--- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----uuu--- ----)----- ---------- gccauucuuc --gcaccuac 3061 g--------- ---------- ---------- ---------- -------acc ga-cc-acga 3121 uc-(u-cu-- -)-gagaga- -ggu-uugag u]-------- ---------U GGAGCAUAU- 3181 -CUG-UUAGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AG|U-AGAAU GAAGUCAGGG 3241 (GAAA----- -----)CCCU GAU-GGAGGU UCG-UA---G CG-AUACUGA (CGUGCAAA) 3301 UCG-U-UCGU CAAACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUUCUUC CGAAGUUUCU --(CUCA)GG 3421 AUAGC-UGGA -GUUu--|-- -|-ug----- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------u 3661 u-aguUUUAU -C|AGG--UA AA-GCGAAUG AUUAGAGGc- -----aucgg ggg---(cgc 3721 g--)---ucc u-cga-|CCU AUUC-UCAAA CUUUA-AAUG |GGUAAGacc -ca-guggu- 3781 u-acuucauu g--aacugcu gggauu---- ---------- ---------- ---------- 3841 ---------- ---------- ----AAUa-u g|AA-CUCCA -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGAGG(GA- UGCU)CCU-- AACGCUU--- GGUUAAG--G 3961 U|GCCA-AAA U-G--CU-CG CUCAU-ca-- --------ga uaccau---- -AAAAGGUGU 4021 U--GGUUCAU UUUGACA-GC AGGACGGUGG UC(AUGG-AA GUC)GAAAUC CG|C(CAA)G 4081 |GUGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAACC AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- GAAGCG-GC| U|-------- --ACCGGU-- --ACCAGGC| (- -----)-gua gcaau-gAGU AGGA------ 4441 --AGA|-CG- UG-GG-GA-- --------u- -u-g-uga-- c------GAA GCGU----UC 4501 G--GC(GUAA -)CGU-GCG- UGG|A-ACA| G--UCUCUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GACUGAAGU G-GAG|AAGG GUU|CCAUGU GA-ACA(-GC AAU)UG|GAC 4681 AUGGGUUAGC |-CGG-UCCU AAGC------ -------<-- --uacca-u- -guaa--cug 4741 cgua-uacgu u--------- -aggu-uuc- -------uuu -accucguuu c--------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----GC-GAA AGGGA-AU-C GGG(UUAAUA UU-)CCCGA| -GC----cag gacgugg-au 4981 --[acugu-- ---------- ---------- ---------- -----acg(- -guaa--)cg 5041 u--------- ---------- ---------- ---------- -----aa-g] uga-acuccu 5101 cgac-----g cag--gcagg ug-c-uccg- -GG-AAGC(G UUGUCUUU-) GCUUUU-|UA 5161 A-cagccuu- ------uucu uuu|a-ua-c cugg--aauc ----ag(uuu ag-)cugga- 5221 ga-ua-ggg- uuagc----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----uggc-u gGU-----AG 5341 AGCACCUUG( -guuuc--)C AAGGUGUC-c ggugcg---c -uccug--ac ugcC-CUUGA 5401 AAA-gaggag -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaaaguu-- ---------- ----guuauu u-gc-acc-- cc-uggCCGU 5581 A|CC--AAUA ACC(GCAUCA )GG|UCU-CC AAGGU(UAGU A)GCCUCU-| GGUCG-||A- 5641 UA-G--AAUA AG-GUAG-AU A-AGGGAAGU CGGCAA-AAU -AGAUCCGUA AC(UCCG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- ------------ -------CUC AGAACU|G(- --GAG)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--UG G|CCA(---- 6661 uaac)UGG-- ---------- --U-GUUGAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---ugugau- ----(gaaa) -----uucaa ----UCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU AUCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCC G---ACU-UU |GUGAAAUGA CUUAGGAGGU 7021 GUAGCAUGAG UGGGAGC--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -UUCG)---- 7141 ---------G C-GCUCGUGA AA-UACCACU |ACUCUUAA- -UGUCG-UUU UACUUAu--- 7201 ---------- ---------| --a GACAC-AGUC A-GGUU-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (GAAACAAUA GC-)GCAG-G U|G|U|CCU- AAGGC-AAGC |UCAAU-GAG 7621 -A(ACA---- GAAA)UCUCA UGUUGA|CC( A|A--AAGG) GGAAAAG-CU U-GCUUGAUU 7681 -UUGAUUU(u c--aguac-- )GAAUACAAA CUGU(-GAAA )GCAUGG|CC --UAU|CGA- 7741 CCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -GUC-UGA(- -gaaa-c--u u---)----- ---------- 7861 -----UCA|G CUAGAG-GUG UC|aGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-AGACG(CA -GA-)AGUCU CAAA-GUGU| CGGAU(UGUU C)ACCCGCCA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-C<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->-uuga ua-cu-gc-G ACAGUAAUCC AACU(UAGUA 8281 C(GAGA)GGA AC-)AGUUGG G|UUGGAUAC UUGGUAAAUG CGG|-CUAGC U(GAAA)AGC 8341 UAGUGCCGCG A-CGCUACC- AU-CCGU--U GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCA-U GCUG--gaua ugca--gugu u<--auucac cgccuccu-u uguu-ucaug 8461 caaugauaca -ggcc-ucu- -ggccugcu- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- -ucucaucaa agcccuccgc uucaugcuuu 8641 ugggcgagaa ucucaa-uuu c-u-aa-cau uggagguga> --|------- ---------- 8701 ----uacauc |cauug(-ca gacga)cu-u uguu-----g c-a|accggg uauuguaagu 8761 au-gagagua gg----(cuu -g-------- ---------- ---------- ---------- 8821 ----)----u cuacgauc-u ac-|uaagau u|uuu--ccu g--cgu-u-g uu--cga-ug 8881 ugg--|---- ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.gond.RH2 9262 bp RNA RNA 05-MAR-1996 DEFINITION Toxoplasma gondii. str. RH; 5.8S ribosomal RNA; ribosomal RNA large subunit. ACCESSION L25635 KEYWORDS 5.8S ribosomal RNA; ribosomal RNA large subunit. SOURCE Toxoplasma gondii. str. RH. ORGANISM Toxoplasma gondii. REFERENCE 1 (bases 1 to 4648) AUTHORS Gagnon,S., Bourbeau,D. and Levesque,R.C. TITLE gondii and molecular analysis of the peptidyltransferase domain Sequencing the large ribosomal RNA coding region of Toxoplasma JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L25635 NCBI gi: 1220542 BASE COUNT 910 a 765 c 971 g 996 t 5620 others ORIGIN 1 |--------- ---------- ---------- ----AAAUUU UCAGCAAUGG AUG|UCUUGG 61 |CUCGCGC|A A|-CGAUGAA GGA|CGCA(- -GCGA-AC)U |GC-GAAACG CA-augu|[g 121 gaauugcaga auucagugaa u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---cauca|G AUUUCU-GAA Cgc-(aa-u- )-g-c|--ac 241 cu------gg g(-------- ---------- ---------- -----auau- ---)cucc-- 301 ------uggu ---acgucug -u-uu-cagu gucu--(--- ---uu----/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------auc )--agaccug aaaucagg-c gag----GUU 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UU AUUAAG-C-G G-AGGAGA-- --AGAAAAU( 541 AAC-U)AU-G AU|UCCCUUA GU---AAC(G GCGA)GUG-A A-----CCGG GAUC------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------a aguggaaauc aac------- 781 ugcuc-(uuu cc-)gagc-- u-----guug acuugua--- ----gccucg agagg-cguu 841 accagugg-a ag-c------ ---------- ---------- ---------- gcagg-g--- 901 ----uuaa-- --g-uuu-c( u-(ugggaa- )a)gaa-c-- ---------- --------AU 961 --|C(AUA)G |AGGG-(UGA GAAU)-CCCG UC|--cuuc- -cccugcguu u-----uuug 1021 uuccacgua- cgguacgc-u uuuaua---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGCGUU CAU(----CG 1141 GGAU)UUGAG CGCAAA---- auGUGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAGGUUU-- ---------- ---------- ---------- )CAC-AUAAA GCU----AAG 1381 UA-------- ---------- CUGGC-GCGA GACCGAUAGC AAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAUG -AAA-AGUUC UUU(gg-aa- )AGAG-AGUU --AAAAGUGC C-UGAAAU-U 1501 GCUGA-AAA< gg---aagcg auugggaccu uuuugauucc caagaagug- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- -------ccc gcccgguuug cca--ucuau 2221 cccuuugccu ucucucucu- caccagguu- -uaggcuuug guuucuugau guauu-uccg 2281 guucaucuuu uuggagaggu ca-gcaucag cuacucggaa uugau(uucg -)uucaaaga 2341 agguagguuc cuugugga-- -ccguuauau cuuuguucuu uccuuuuccu ---uguggcu 2401 g-aggagugu uccu-guuuc --cgagcucc acu(-uucg) aguacucggu uucu------ 2461 ---------- ---------- ---------- ---------- ---------- ---------g 2521 ugau-gcu-- --------gg cuu-aauc-g guuccaaccg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUAUGU GCGAGUAu-- gcggg----( ----u-uuua 2641 cu)------- ---------- ---c-cugu- ---------- ---aUGCGCA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------gag uaggga--ga uuuug-c--- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----uuu--- ----)----- ---------- gccauucuuc --gcaccuac 3061 g--------- ---------- ---------- ---------- -------acc ga-cc-acga 3121 uc-(u-cu-- -)-gagaga- -ggu-uugag u]-------- ---------U GGAGCAUAU- 3181 -CUG-UUAGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AG|U-AGAAU GAAGUCAGGG 3241 (GAAA----- -----)CCCU GAU-GGAGGU UCG-UA---G CG-AUACUGA (CGUGCAAA) 3301 UCG-U-UCGU CAAACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUUCUUC CGAAGUUUCU --(CUCA)GG 3421 AUAGC-UGGA -GUUu--|-- -|-ug----- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------u 3661 u-aguUUUAU -C|AGG--UA AA-GCGAAUG AUUAGAGGc- -----aucgg gggcg-(cgu 3721 ---)-cgccc u-cga-|CCU AUUC-UCAAA CUUUA-AAUG |GGUAAGauc -ca-guggu- 3781 u-acuucauu g--aacugcu gggauu---- ---------- ---------- ---------- 3841 ---------- ---------- ----AAUa-u g|AA-CUCCA -AGU-GGGCC -AUU-U--G( 3901 G-UAAG)CAG AAC-UGGC-G AUGAGG(GA- UGCU)CCU-- AACGCUU--- GGUUAAG--G 3961 U|GCCA-AAA U-G--CU-CG CUCAU-ca-- --------ga uaccau---- -AAAAGGUGU 4021 U--GGUUCAU UUUGACA-GC AGGACGGUGG UC(AUGG-AA GUC)GAAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAACC AGC|CC-UGA AAA--UGGAU 4141 G-uGCG-CU- GAAGCGGGC| U|-------- --ACCGAU-- --ACCAGGC| (- -----)-gua gcaau-gAGU AGGA------ 4441 --AGA|-CG- UG-GG-GA-- --------u- -u-g-uga-- c------GAA GCGU----UC 4501 G--GC(GUAA -)GCCUGCG- UGG|A-ACA| G--UCUCUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GACUGAAGU G-GAG|AAGG GUU|CCAUGU GA-ACA(-GC AAU)UG|GAC 4681 AUGGGUUAGC |-CGG-UCCU AAGC------ -------<-- --gacag-c- -uuaa--cug 4741 cgua-uacgu u--------- -aggu-uuc- -------uuu -accucguuu c--------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----GC-GAA AGGGA-AU-C GGG(UUAAUA UU-)CCCGA| -GC----cag gacgugg-au 4981 --[acugu-- ---------- ---------- ---------- -----acg(- -guaa--)cg 5041 u--------- ---------- ---------- ---------- -----aa-g] uga-acuccu 5101 cgac-----g cag--gcagg ug-c-uccg- -GG-AAGC(G UUG-CCUU-) GCUU---|UA 5161 A-cagccuu- ------u-cu uuu|auaccc cugg--aauc ----ag(uuu ag-)cuggga 5221 ga-ua-ggg- uuagc----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----uggc-u gGU-----AG 5341 AGCACCUUG( -GUUUC--)C AAGGUGUC-c ggugcg---c -uccug--ac ugcC-CCUUG 5401 AAAagaggag -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaaaguu-- ---------- ----guuauu u-gc-acc-- cc-uggCCGU 5581 A|CC--AAUA ACC(GCAUCA )GG|UCU-CC AAGGU(UAGU A)GCCUCU-| GGUCG-||A- 5641 UA-GAUAAUA AG-GUAG-AU A-AGAAUCGU CG-CA--AAU -AGAUCCGUA AC(UUCG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- ------------ -------CUC AGAACU|G(g augcg)guuA 6601 CAAGGGGAAU C|aCGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--UG G|CGa(---- 6661 uaac)u-g-- ---------- --U-GUUGAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---ugugau- ----(gaaa) -----uucaa ----UCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU AUCAACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCC G---ACU-UU |GUGAAAUGA CUUAGGAGGU 7021 GUAGCAUAAG UGGGAGC--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -UUCG)---- 7141 ---------G C-GCUCGUGA AA-UACCACU |ACUCUUAA- -UGUCG-UUU UACUUAu--- 7201 ---------- ---------| --a GACAC-AGUC A-GGUU-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (GAAACAAUA GC-)GCAG-G U|G|U|CCU- AAGGC-AAGC |UCAAU-GAG 7621 -A(ACA---- GAAA)UCUCA UGUUGA|CC( A|A--AAGG) GGAAAAG-CU U-GCUUGAUU 7681 -UUGAUUU(u c--aguac-- )GAAUACAAA CUGU(-GAAA )GCAUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -GUC-UGA(- -gaaa-c--u u---)----- ---------- 7861 -----UCA|G CUAGAG-GUG UC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG C-ACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-AGACG(CA -GA-)AGUCU CAAA-GUGU| CGGAU(UGUU C)ACCCGCCA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-c<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->-uuga ua-cu-gc-G ACAGUAAUCC AACU(UAGUA 8281 C(GAGA)GGA AC-)AGUUGG G|UCGGAUAC UUGGUAAAUG CGG|-CUAGC U(GAAA)AGC 8341 UAGUGCCGCG A-CGCUACC- AU-CCGU--U GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCA-U GCUG--gaua ugca--gugu u<--auucac cgccuccu-u uguu-ucaug 8461 caaugauaca -ggcc-ucu- -ggccugcu- ---------- ---------- ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- -ucucaucaa agcccuccgc uucaugcuuu 8641 ugggcgagaa ucucaa-uuu c-u-aa-cau uggagguga> --|------- ---------- 8701 ----uacauc |cauug(-ca gacga)cu-u uguu-----g c-a|accggg uauuguaagu 8761 au-gagagua gg----(cuu -g-------- ---------- ---------- ---------- 8821 ----)---uc cuacga-c-u ac-|uaagau u|uuu--ccu g--cgu-u-g uu--cga-ug 8881 uggcc|u--- ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (5)-Haemos 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS P.falcip.A 9262 bp RNA RNA 11-JAN-191 DEFINITION Plasmodium falciparum. ACCESSION No information KEYWORDS No information. SOURCE Plasmodium falciparum. ORGANISM Plasmodium falciparum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U21939 LOCUS PFU21939 4204 bp DNA INV 02-AUG-1995 DEFINITION Plasmodium falciparum 5.8S rRNA and LSU rRNA genes, complete sequence, and ITS1, partial sequence and ITS2, complete sequence. ACCESSION U21939 KEYWORDS . SOURCE malaria parasite. ORGANISM Plasmodium falciparum Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Alveolata; Apicomplexa; Haemosporidians; Plasmodium. REFERENCE 1 (bases 1 to 4203) AUTHORS Waters,A.P., White,W. and Mccutchan,T.F. TITLE Characterisation of the Large Ribosomal RNA Gene of Plasmodium falciparum Expressed in Asexual Bloodstage Parasites JOURNAL Unpublished REFERENCE 2 (bases 1 to 4204) AUTHORS Waters,A. P. TITLE Direct Submission JOURNAL Submitted (01-MAR-1995) Andrew P.Waters, University of Leiden, Parasitology, Wassenaarseweg 62, Leiden, the Netherlands, 2300RC COMMENT NCBI gi: 924644 FEATURES Location/Qualifiers source 1..4204 /strain="CAMP" /organism="Plasmodium falciparum" /dev_stage="asexual bloodstage" misc_RNA <1..62 /note="ITS1" /product="internal transcribed spacer 1" rRNA 63..220 /product="5.8S ribosomal RNA" rRNA 221..416 /note="ITS2" /product="internal transcribed spacer 1" misc_RNA 417..4204 /note="LSU rRNA" /product="large subunit ribosomal RNA" BASE COUNT 1311 a 681 c 839 g 1373 t ORIGIN BASE COUNT 1203 a 655 c 820 g 1268 t 5316 others ORIGIN 1 |--------- ---------- ---------u ag-cacaGUC UUAACGAUGG AUG|UCUUGG 61 |UUCCUAC|A G|-CGAUGAA GGC|CGCA(- -GCAA-AA)U |GC-GAUACG CA-auga|[- 121 aaauugcagu ga-cugugaa u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---cauca|G AAUGCU-GAA Ugu-(aaacu )-a-c|--ac 241 caa----uuc c(-------- ---------- ---------- ------uucg ---)ggga-- 301 --auaguggu ---acuccua -c-ag-aaa- au----(--- ---------/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -----guuug )----auuug auguuagg-a gGG----CAA 481 AU|CCGCCGA -A--UU|UA( AGCA)UA-UA AUUAAG-C-G G-AAGAAA-- --AGAAAAU( 541 AAC-U)AU-G AU|UCCUUUA GU---AAC(G GCGA)GUG-A A-----CAAG GACC------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- -----aacgg uuaauccuuc g-------uu 781 uggu--(gca a--)-accuu u-------cg acggaauugu cguugaauu- -auuccauga 841 aug------- ---------- ---------- ------c--- --------cu uuaa----uu 901 ugagcaaa-- --g-uga-g( c-(aggaau- )g)cuu-c-- ---------- --------CC 961 --|C(AUA)G |AGGG-(UGA AAGG)-CCCA UA|--guucu uu-uuaa-uu ---------- 1021 ---uau---- -ucauug--g aauuuuucau gcc------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGUGUU CUU(----UG 1141 AGAU)UGGAG CACUAA---u acGUGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 AUACAUUU-- ---------- ---------- ---------- )CAC-AUAAA GCU----AAA 1381 UA-------- ---------- UGUGU-AGGA GACCGAUAGC AAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAUG -AAAuAGUAC UCA(gg-aa- )UGAGcaauu -aaauAGUAC C-UGAAAU-C 1501 GUUAA-GAU< gg---aacgg auuaagagag aaaaca|a-g uaaagagg-g gaa---uuuu 1561 uaauuuuuuu uguuauaa-- uucu-cuucu uuauu|aaaa gaaaca|uca gugauuaauu 1621 uaauuucaau aaagcaaucc ccugaaauuc aaaauuucuu uuaauuuucu uuucacuuuc 1681 uccccgcacu ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- aaugugggga aaacuggcuu uauuucuuca auuauuuuuu 1921 uugcuga|gg aauuuua--- |aaauuauuu -gaauuuuuc ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------u uc----uuau -aauuu|aag 2521 uuguuucu-- --------au aua-guac-u uucuuaaccc >------ACU CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAGCAAAUGU GCAAgugu-- auau-----( -------gau 2641 uc)uuuaaac auuucucuuu uua--auau- ---------- ---ACgcaua au(uaau)gu 2701 aa[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------u 2881 auguuucuuu a--------- ---------- ---------u uguagauuug ugugguguuu 2941 a--------- ---------- ---------- ---------- ---------- ---------a 3001 u--------( ----uuuu-- ----)----- -----auuaa au-ccccacu uugcauaca- 3061 u--------- ---------- ---------- ---------- --------cc gg-ua----- 3121 agc(a-auua u)gcuu---- -ua--uugag u]-------- ---------A CGAGCAUAU- 3181 -UUG-GUAGG ACCCGAGAGG C-UUUG-AAC UAAG-CGUG- AU|G-AGAUU GAAGUCAGAC 3241 (GAAA----- -----)GUCU GAU-GGAGGA UCG-AG---U UG-AUACUGA (CGUGCAAA) 3301 UCG-U-UCAU UUCAAUCACG UUUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAAAA GCCUAUUAGC UGGUUAUUUU CGAAAGAUCU --(CUCA)GG 3421 AUCGC-UGGA -GUUg--|-- -|-aauuaa- uau------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 --aauUUUAC -C|AGG--UA GA-GAUAAUG AUUAGAGGa- -----aucag ggaaa-(-uc 3721 gu-)-uuucc u-uga-|CCU AUUC-UCAAA CUCCC-AAUA |GGUAAAaag -gg-cgaaa- 3781 uaacucaacu uguauuucac ucauauuaaa ---------- ---------- ---------- 3841 ---------- ---------- ----uaaa-a u|AA-CUCCA -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGAGG(GA- UGCU)CCU-- AACGCUU--- GGAUAAG--G 3961 U|GCCU-AAA U-A--UU-CG CUCAU-ga-- --------ga ucccau---- -AAAAGGUGU 4021 U--GGUUCAU AAUGACA-GU AGGACGGUGG UC(AUGG-AA GUC)GAAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUACC -GAAUGAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- AAAGCGGAU| U|-------- --ACCGAU-- --ACCAAGC| (- -----)ucuu uuuau-gAGU AGAA------ 4441 --AAU|-CG- UG-GG-GU-- --------u- -u-g-ugu-- u------GAA GCGA-----A 4501 AU-AC(GUGA -)GUUUUCG- UGG|A-aca| uc-UCCCUA- GUGC-AGA-U CUUGGU|GG- 4561 AAGUAGCAAC -UAUUCAAAa U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GACUGAAGU G-GAG|AAGG GUU|UCUUGU CA-ACU(-GU GAU)UG|AAC 4681 AAGAGUUAGC |-CGC-UCCU AAGG------ -------<-- --gauag-cu -gaaa---ag 4741 uguuuaaaag ---------- -gggg-uuc- -------cuu -ccccguc-- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-AAA AGGGA-AA-C AGG(UUGAUA UU-)CCUGU| -GC----caa u--aguauua 4981 u-[gaguuu- -----cuuag ---------- ---------- -----aug(- -guaa--)ca 5041 u--------- ---------- ---------- ---------a uauauaa-a] uga-acuccu 5101 uuac-----a uag--gcuuu acac--ucg- -GG-GUGC(G UUUUCUUU-) GCACUU-|UA 5161 c-cuuua--- ---------- -uaacaaacc uugg--aauc ----aa(uuu ac-)uugga- 5221 ga-ag-agg- uucguugaac ucaauucaaa aaauuucu-- ---------- ---------- 5281 ugaacggggu uuucggauuc aguucauuuu auuuuuugu- ----uuugua gca-----AU 5341 AGUAAUUCG( -uuuuua-)U GAAUUAUC-c gaagug---g -uaagg--ac uauC-CUUGA 5401 AAA-aaggag -<-------- ---------- ---------- ------ggaa cggcuuugua 5461 aacuugguuu c-------uu cu-------- --gauuccau uuugc---uu ugcuauacuc 5521 u>-------- ---------- ---------- --------ua a-ua-cuu-- guaugaGCGU 5581 A|CC--AACA ACC(GCAUCA )GG|UCU-CC AAGGU(UAAC A)GCCUCU-| GGUUaa||A- 5641 UA-G--AAAA AA-GUAG-GU A-AGGGAAGU CGGCAAaAAU -AGAUCCGUA AC(UUCG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- ------------ -------CUC AGAACU|G(- --AAA)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAUAGCAU UGUG|A-aaa G|CCA(---- 6661 caac)UGG-- ---------- --U-AUUAAC ACAAUGUG-- AUUUCUGCCC AGU|GCUUUG 6721 AA-UGUCAA- ---cuugau- ----(gaaa) -----uucaa ----UCAAGC G|CAGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU ACUUGCUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -A-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUUAC UCU-|AGUCU G---GCU-UU |GUGAAACGA CUUAAGAGGU 7021 GUAGCAUAAG UGGGAGUaga aac------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->u- -gaaauau-- 7141 ---guuuuuA C-GACAGUGA AA-UACCACU |ACUUUUAA- -AGUUG-UUU UACUUAu--- 7201 ---------- ---------| --a GACAU-AGCC A-GGUG-GGG AG-UUUGACU G(GGG)CGGU 7561 A-C|AUCUGU (UAAAUAUUA AC-)GCAG-A U|G|U|CCA- AAGAC-AAGC |UCAAA-GAG 7621 -A(ACA---- GAAA)UCUCU UGUAGA|CU( A|A--AAGG) GGAAAAG-CU U-GUUUGAUU 7681 -UCUAUUU(u c--agaac-- )AAGUAGAAA ACGU(-GAAA )GCGUGG|CC --UAU|CGA- 7741 UCCUuuau-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -auu-ugc(- -aaaa-u--g a---)cguaa auuacuuacu 7861 acugugca|u auagAG-GUG UC|uGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCUGCCAAGC G(CUCCU)AG CGACGUAGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-GGACG(CA -GA-)AGUCU CAAA-GUGU| CGGAU(UGUU C)ACCCGCUA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-a<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ----uuuuau 8221 uauauuuuu- uauauauaca u--->-auag ua-uu-gu-G ACAGUAAUCC AACU(UGGUA 8281 C(GAGA)GGA UU-)AGUUGG U|UCAGACAA UUGGUA-cAG CAA|-UUGGU U(GACA)AAC 8341 CAGUGUUGCG A-ACGUAA-- GU-CUGU--U GGAUAAUGGC U(GAACGCCU CuU-A)AGCC 8401 AGAAACCA-U GCUG--auua aaca--auac u<--auuucg uucuuuuu-- uguu-uc--- 8461 --cuuuuuua -cugcuaaug uaaaagaga- ---------- ---------- aauuauauau 8521 guacc----- ---------- ---------u uuuuuu---- ----gguaca uaaauaaucc 8581 ---------- ---uaucacc ---------- ------uuuu ucgugagcug ugagcuguga 8641 gcuaggcaau aguucu-uua a-c-aa-ca- aaaaagaau> --|------- ---------- 8701 ----ugcaca |aacug(-ua gacga)cu-u uuuu-----g c-c|ucaggg ugcuguaaac 8761 au-gaaagua aa----(cuu ugu------- ---------- ---------- ---------- 8821 ----)----u uuacgauc-u gu-|ugaggc u|uau--ccc u--agu-g-g ua--aag-ug 8881 uuu--|---- ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS P.falcip.S 9262 bp RNA RNA 11-JAN-191 DEFINITION Plasmodium falciparum S. ACCESSION No information KEYWORDS No information. SOURCE Plasmodium falciparum S. ORGANISM Plasmodium falciparum S. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U48228 BASE COUNT 1460 a 577 c 910 g 1434 t 4881 others ORIGIN 1 |--------- ---------- ---------u agccacaAUC UUAACGAUGG AUG|UCUUGG 61 |UUCCUAU|A G|-CGAUGAA GGC|CGCA(- -GCAA-AG)U |GC-GAUAUG CA-auga|[- 121 aaaaugcaau ua-cugugaa u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---cauca|G AAUGCU-GAA Ugu-(aaacu )-a-u|--ac 241 cau-auuuac c(-------- ---------- ---------- -----cuuau g--)ggcaaa 301 uuaacguggu ---auuccua -c-ag-aaa- au----(--- ---------/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -----auuug )----auuug auguuagg-a aGG----CAA 481 AU|CCGCCGA -A--UU|UA( AGCA)UA-UA AUUAAG-C-G G-AAGAAA-- --AGAAAAU( 541 AAC-A)AU-G AU|UUCUUUA GU---AAC(G GCGA)GUG-A A-----CAAG AAAA------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------a ggagauaauu cuaua-ucgu 781 aguu--(gua a--)-aaaga cu-augugua uagaaauug- uucuguuau- -aagg-aaga 841 aguaaucuga gaauauaugg gauuuauaua uauauuua-- --------gu uau------- 901 ----cgaa-- --a-uaa-g( u-(aggaau- )a)cuu-u-- ---------- --------CC 961 --|C(AUA)G |AGGG-(UGA AAGG)-CCCG UA|--guua- -auaaauaua --------ua 1021 aaguuc--uu uuuu-uu--u ggaua-auuu uuuuuuuuaa a--------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-AGUGCU CUU(----UG 1141 AGAU)UGGAG UACAAA---g auGUGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 AUACAUUU-- ---------- ---------- ---------- )CAC-AUAAG GCU----AAA 1381 UA-------- ---------- UAUAU-AGGA GACCGAUAGC AAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAUG -AAAuAGUAC UCA(gg-aa- )UGAGcaguu -aaauAGUAC C-UGAAAU-C 1501 GUUAA-GGU< gg---aacgg auuaagaaag gaaaa-|u-g uaagaagaua guaaauauua 1561 cucggcgagu uuuauuaaga uacgauuuuu uuaua|aaaa gaaaca|uga gugaacgaga 1621 auaaauuaua auauaauuau auuagauagg uauagaauag auacacagga cuaagggggg 1681 aggaguagua agaaaaaggg ugcaguguaa aaggguuaug cuuguauguu ugaguauuca 1741 cugcuucuuu uuuuuuuuuc uguaauuuua uaucuauuua auuaaaguau ccuuagcuaa 1801 uaauaauuua ugaaggaaga acuuaau--- uuauaugagu uuuaaaaggc augauuauau 1861 uguauauuau augauauaua uauaauuaug uuuuaaccga aaugcguaua auuauucugu 1921 uuacuga|gg aaagagguaa |acaauagug ugaacuaaga augggauau- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------u ucuuuuuucu gauugu|aag 2521 uuguuuuu-- --------aa aua-guac-u uuuuuaaccc >------ACU CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAAAUGU GCGAGCGu-- augug----( ------auau 2641 --)------g aauaaaaaca ---u-auau- -aaauuuuua guuaCGCgua AU(UAAU)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------a 2881 uuuu------ ---------- ---------- ---------u uguggaugcg ccggac-aau 2941 a--------- ---------- ---------- ---------- ---------- ---------g 3001 ---------- -----ugcau ---------- ------uugg uu-ucuggc- uugcaaacaa 3061 u--------- ---------- ---------- ---------- -------acc ga-ua--agc 3121 aauaa-gaua auuaaguu-- -uau-uugag u]-------- ---------A UGAGUACAU- 3181 -UUG-UUAGG ACCCGAGAGG C-UUUG-AAC UAAG-CGUG- AU|G-AGAUU GAAGUCAGAC 3241 (GAAA----- -----)GUCU GAU-GGAGGA UCG-AG---U UG-AUACUGA (CGUGCAAA) 3301 UCG-U-UCAU UACAAUCACG UUUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAAAA GCCUAUUAGC UGGUUAUUUU CGAAAGAUCU --(CUCA)GG 3421 AUCGC-UGGA -GUUg--|-- -|-aguugau uau------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 --aauUUUAU -A|AGG--UA GA-GACAAUG AUUAGAGGg- -----uuuag gggau-(uaa 3721 au-)-auuuc u-uaa-|CCU AUUC-UCAAA CUUCC-AAUA |UGUAAAgag -gg-ugcga- 3781 uaucugaaa- aguauuucac uuuggcguaa a--------- ---------- ---------- 3841 ---------- ---------- ----uaag-a u|AA-CUCCA -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGAGG(GA- UGCU)CCU-- AACGCCU--- GGAUAAG--G 3961 U|GCCU-AAA U-A--UU-CG CUCAU-ga-- --------ga ucccau---- -AAAAGGUGU 4021 U--GGUUCAU AAUGACA-GU AGGACGAUGG UC(AUGG-AA GUC)GAAAUU CG|C(UUA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUACC -GAAUGAACU AGC|CC-UGA AAA--UGGAU 4141 G--G-G-CU- AAAGCGAAU| U|-------- --ACCGAU-- --ACCGGGC| (- -----)ucuu uuuau-gAGU AGAA------ 4441 --AAU|-CG- UG-GG-GU-- --------u- -u-g-ugu-- u------GAA GCGA-----A 4501 AU-AC(GUGA -)GUUUUCG- UGG|A-aca| uc-UCCCUA- GUGC-AGA-U CUUGGU|GG- 4561 AAGUAGCAAC -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GACUGAAGU G-GAG|AAGG GUU|UCUUGU CA-ACU(-AU GUU)UC|UAC 4681 AAGAGUUAGC |-CAC-UCCU AAGG------ -------<-- --gauag-cu -gaaa---ag 4741 uguuuaaaag aaguaagaua uuauau-gg- -------aa- auauauaauu agau-cuucg 4801 uc-------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-AAA AGGGA-AA-C AGG(UUAAUA UU-)CCUGU| -GC----caa a--uagaagu 4981 a-[agggug- -----ugaau aaagaaag-- ---------- -----aug(- -guaa--)ca 5041 u--------- ---------- ---------- ---------a cauacaa-a] uga-acuccu 5101 ugac-----a uag--guuuu acgc--ucg- -GG-GUGC(G UUAUCUUU-) GCACUU-|UA 5161 A-uuuua--- ---------- -uagcaaacc uugg--aauc ----aa(uuu au-)uugga- 5221 ga-ag-agg- uuuguugaac ucaauucaaa aaauuuau-- ---------- ---------- 5281 --ggcugggu uuucggauuc aguucauuuu auuuuuugu- ----uuugua gca-----AU 5341 AGUAAUUCG( -uuuuua-)U GAAUUAUC-c gaagug---g -uaaaa--ac uauC-CUUGA 5401 AAA-aaggag -<-------- ---------- ---------- ------ggaa cggag-caua 5461 uacagaaggg aauuuaauua uuuuuuuuuu ugaguu-acc uucu-uaugu gaaauacucu 5521 u>-------- ---------- ---------- ----auauuc aauc-aa--- uaaugaGUGU 5581 A|CC-cAAUA ACC(GCAUCA )GG|UCU-CC AAGGU(UAGU A)GCCUCU-| GGUUaa||A- 5641 UA-G--AAAA AA-GUAA-GU A-AGGGAAGU CGGCAA-AAU -AGAUCCGUA AC(UUCG)GG 5701 AAAAGGGUU| GGCUCUGAG- ---------- ------------ -------CUC AGAACU|G(- --AAA)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAUAGCAU UGUG|A-aaa a|CCA(---- 6661 uaac)UGG-- ---------- --U-AUUAAC ACAAUGUG-- AUUUCUGCCC AGU|GCUUUG 6721 AA-UGUUAA- ---guugau- ----(gaaa) ---aauucaa ----UUAAGC G|CAGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU ACUUGCUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -A-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUUAC UCU-|AGUCU G---GCU-UU |GUGAAACGA CUUAGAAGGU 7021 GUAGUAUAAG UGGGAGUaca aagaagggau cga------- ---a------ ---------- 7081 ---------- ---------- ---------- ---------a acuaa--uu- -cgaucuuua 7141 uguuuuuguA C-ACAAAUGA AA-UACCACU |ACUUUUAC- -AGUUG-UUU UACUUAu--- 7201 ---------- ---------| --a GACAU-AGCC A-GGUG-GGG AG-UUUGACU G(GGG)CGGU 7561 A-C|AUCUGU (UAAAAAAUA AC-)GCAG-A U|G|U|CCA- AAGAC-AAGC |UCAAU-GAG 7621 -A(ACA---- GAAA)UCUCG UGUAGA|CU( A|A--AAGG) GGAAAAG-CU U-GUUUGAUU 7681 -UCUAUUU(u c--agaaa-- )GAAUAGAAA ACGU(-GAAA )GCGUGG|CC --UAU|CGA- 7741 UCCUuuau-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -uuu-ugc(- -aaaa-u--g u---)auuaa uaacauucug 7861 acugugca|u auaaAG-GUG UC|uga--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCUGCCAAGC G(CUCUU)AG CGACGUAGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-GGACG(CA -GAa)AGUCU CAAA-GUGU| CGGAU(UGUU C)ACCCGCUA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-a<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- --uuuuauua 8221 uauauuuuau auauauauau acau>-auag ua-uu-gu-G ACAGUAAUCC AACU(UGGUA 8281 C(GAGA)GGA UU-)AGUUGG U|UCAGACAA UUGGUA-cAG CAA|-UUGGU U(GAUA)AGC 8341 CAGUGUUGCG A-ACGUAA-- GU-CUGU--U GGAUAAUGAC U(GAACGCCU CuU-A)AGUC 8401 AGAACCCA-U ACUG--auua gaca--auuu u<--auauug uucuuuu--- uguu-uaaau 8461 auaaaaaua- --uuau---- -uauuuuuuu uacugcuaau guaaaugaga aauuauacau 8521 auauuagaaa aaaaauguaa uuaauuguuu uuuuuucgcu uuauaauaua ucaauaaucc 8581 ---------- ---uaucuuu uuauauauau guauguguau acauauauau auauguauau 8641 auaaauagau uguaau-uua a-c-aa-ca- -aaaagugu> --|------- ---------- 8701 ----uaagca |uauug(-ua gacga)cu-u uuca-----g u-c|ucagag ugcuguaaac 8761 au-gagagua aa----(cua agu------- ---------- ---------- ---------- 8821 ----)----u uuacgauc-u gu-|ugaggc u|uau--ccc u--agu-g-g ua--aag-ug 8881 uuu--|---- ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS P.lophurae 9262 bp RNA RNA 03-MAY-1994 DEFINITION Plasmodium lophurae.; 25S ribosomal RNA; ribosomal RNA; transposon. ACCESSION M14868 M14869 KEYWORDS 25S ribosomal RNA; ribosomal RNA; transposon. SOURCE Plasmodium lophurae. ORGANISM Plasmodium lophurae. REFERENCE 1 (bases 1 to 602) AUTHORS Unnasch,T.R., McLafferty,M. and Wirth,D.F. TITLE The primary structure of the rRNA insertions of Plasmodium lophurae JOURNAL Mol. Biochem. Parasitol. 16, 149-161 (1985) STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: M14868 NCBI gi: 160644 BASE COUNT 254 a 70 c 92 g 186 t 8660 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~| 61 ~~~~~~~|~~ |~~~~~~~~~ ~~|~~~~(~~ ~~~~~~~)~| ~~~~~~~~~~ ~~~~~~|[~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~]~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~(~~~~~) ~~~~|~~~~~ 241 ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~)~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~|~~~~~~~~ ~~~~~|~~(~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 541 ~~~~)~~~~~ ~|~~~~~~~~ ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~(~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ 901 ~~~~~~~~~~ ~~-~~~~~(~ ~(~~~~~~~) ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 961 -|~(~~~)~| ~~~~-(~~~~ ~-~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ AGU-CGUGUU CUU(----UG 1141 AGAU)UGGAG CACAAA---u guGUGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 AUACAUUU-- ---------- ---------- ---------- )CAC-AUAAA GCU----AAA 1381 UA-------- ---------- UGUGU-AGGA GACCGAUAGA AAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAUG -AAAuAGUAC UCA(gg-aa- )UGAGcaauu -aaauAGUAC C-UGAAAU-C 1501 GUUAA-GAU< gg---aacgg auuaagaaag aaaaaa|a-g uaaaaaag-- gaa---uuau 1561 aaagcuuuau acuuuauu-- uuug-cuuuu uuauu|aaaa gaaaca|uca gugaaaagga 1621 auaauugaaa gaaaauauau cacgaaaaaa guaaaauucu auauuuuacc uuuuucuauu 1681 uuuccuaacu ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- --aaagaggg aaaacugauu uucugaauaa uuaaauaaua auuauucuau 1921 uuacuga|gg aauuuua--- |aaaaagaua -aaauuua-- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------u uu-----uau cuuuuu|aag 2521 cuguuucu-- --------aa aaa-auac-u uucuuaaccc >------ACU CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAAAUGU GCAAGUGU-- acau-----( -------gaa 2641 ua)--uacua aacauuaaaa aaaa-ugu-- ---------- ---acgcaua au(uaau)gu 2701 aa[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------a 2881 aauauauaua ---------- ---------- ---------u uguagaaaua gcaaaaaag- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----gaaa-- ----)----- --------cu ucuuugcuaa uugcauacaa 3061 u--------- ---------- ---------- ---------- -------acc ga-c~~~~~~ 3121 ~~~(~-~~~~ ~)~~~~~~~~ ~~~~-~~~~~ ~]~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 3361 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ --(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~-|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~--~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~-~~~~~ ~~~~~~~~~~ ~~~~-~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~-- ~~~~~~~--~ 3961 ~|~~~~~~~~ ~-~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~(~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~-- -~~~~~~~~~ ~~~~~~~~~~ ~----~-~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~- ------~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~-| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~(~~ ~~~-)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- (~~~~~)~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-->(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ <~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~~ ~~~~~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (5)-Piropl 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS T.parva.1 9262 bp RNA RNA 28-JAN-1994 DEFINITION Theileria parva. ACCESSION No information KEYWORDS No information. SOURCE Theileria parva. ORGANISM Theileria parva. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L28998 & L28036 & L26332 BASE COUNT 857 a 748 c 939 g 852 t 5866 others ORIGIN 1 |--------- ---------- ---------- ----AAACUU UCAGCGGUGG AUG|UCUUGG 61 |CUCACAC|A A|-CGAUGAA GGA|CGCA(- -GCGA-AG)U |GC-GAUAAG CA-uugu|[- 121 gacuugcaga cuucugcgaa u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---caaca|G AUUUCU-GAA Cgu-(auuag )-a-c|acac 241 cac---cucu g(-------- ---------- ---------- ------cuug ---)ca---- 301 ---c-guggu ---acuccca -u-uu-cagu gaac--(--- cucaa----/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------gga )--guuccug agauuggg-u gAG----GCU 481 AU|CCACUGA -A--UU|UA( AACA)UA-UA AUUAAG-U-G G-AAGAAG-- --AGAAAAU( 541 AAA-U)AU-G AU|UCCCCUA GU---AAC(G GCGA)GCG-A A-----GAGG GAGG------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------a agugaaaauc cgu------- 781 -ugaa-(uuu ---)gcca-- ------acgg acuugug--- ----gucuug agcgg-cguu 841 gccagugg-u ag-c------ ---------- ---------- ---------- uuggu-g--- 901 ----cuaa-- --g-uuu-c( u-(ugggac- )a)gga-c-- ---------- --------AU 961 --|C(AGA)G |AGGG-(UGA CAAU)-CCCG UA|--cucg- -cuccuaug- -------ucu 1021 auccacgugu cgguacgc-c ugcaua---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGUGCU UUU(----UG 1141 GGAU)UGAAG CGCAAA---- uuGUGA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAGUCUU-- ---------- ---------- ---------- )CUC-AUAAG GCU----AAA 1381 UA-------- ---------- CGGGU-GUGA GACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGGUG -AAA-AGAAC UUU(ga-aa- )AGAG-UGUU --AAAAGUAC C-UGAAAC-U 1501 GCUGA-AAG< gg---aacca auugggacgu acgcuucc-a cugggugcca caguccu--- 1561 ---------- ---------g ucccg--gau aauuauccug g--------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------c au--ggucug agu--a--au 2221 cccuuugg-u ucag------ --ccag---- ---------- ---------- --------cg 2281 ug-ca----- uuggggu-gu c--gc--uaa acac------ ---------- ---------- 2341 ---agucgug ccaucucua- gugugacuag cagauuccag acucuacagc --cucucccc 2401 g-auguaaau accc-uauua --cauuuggg uau-gcuc-c gacuggagcc ucgcu----- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 -----guc-- --------ug gag-uaca-u guuccaacug >------ACU CGU(CUUGAA 2581 AC)ACGA|GC CAAGG-AGUC UAACACUCGU GCAAGUGu-- uuggg----( ----u-ggca 2641 aa)------- ---------- ---c-ccgu- ---------- ---aCGCGAA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------aag cauggcc-uu gggac----- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----uuuguc ----)----- ---------- --gu-cucaa -uucacaugc 3061 g--------- ---------- ---------- ---------- -------gcc gg-uc----- 3121 gcc(u-uug- -)ggu----- -gga-uugcg c]-------- ---------A GGAGCAUGG- 3181 -UUG-UUAGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- GG|U-AGGAU GAAGUCAGGC 3241 (GAAA----- -----)GCCU GAU-GGAGGU CCG-CC---G CG-AUACUGA (CGUGCAAA) 3301 UCG-U-UCGU CAAACCUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUUCUUC CGAAGUUUCU --(CUCA)GG 3421 AUAGC-unnn -nnn---|-- -|nnn----- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------n 3661 n-nnnnnnnn -n|nnn--nn nn-nnnnnnn nnnnnnnnn- -----nnnnn nnn---(nnn 3721 n--)---nnn n-nnn-|nnn nnnn-nnnnn nnnnn-nnnn |nnnnnnnnn -nn-nnnnn- 3781 nnnnnnnnnn nnnnnnnn-n nnnn------ ---------- ---------- ---------- 3841 ---------- ---------- ----nnnn-n G|AA-UUCUU -agU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAA UAA-UGGC-G AUGAGG(GA- UGCA)CCU-- AACGCUG--- GGUUAAG--G 3961 U|GCCU-AAA U-A--CC-UG CUCAU-ca-- --------ga uaccau---- -AAAAGGUGU 4021 U--GGUUCAU AUAGACA-GC AGGACGGUGG UC(AUGG-AA GUC)GAAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAACU GGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- CAAGCAGGU| U|-------- --ACCGAA-- --ACCCGGC| (- -----)-gug acaau-gUGU AGGA------ 4441 --AGA|-CG- UG-GG-CG-- --------u- -u-g-cgg-- c------GAA GUGU-----G 4501 GC-GC(GUGA -)GCCCACA- UGG|A-GCG| G--CGCCUA- GUGC-CGA-U CUUGGC|GG- 4561 UAGUAGUUAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)UUUUGAA |GACUGAAGU G-GAG|CAGG GUU|CCAUGU GA-ACU(-AU GUU)UG|GAC 4681 AUGGGUUAGC |-CGG-UCCU AAGC------ -------<-- --gccag--- -uuaa---cu 4741 gcgugugagg u--------- -gac--uuu- -------g-- --guccgcuc c--------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----GC-GAA AGGGA-AU-C GGG(CUAAUA UU-)CCCGA| -GC----cgg gucgugg-au 4981 --[acugg-- ---------- ---------- ---------- -----gug(- -gcaa--)ca 5041 c--------- ---------- ---------- ---------- -----aa-g] uga-acuucu 5101 cgac-----g cag--gcgug gg-u-cccg- -GG-AAGC(G UUAUCUUU-) GCUUUU-|UA 5161 A-cagucuc- ---------- gag|u-gc-c cugg--aauc ----ag(cuu au-)cuggc- 5221 ga-ua-ggg- acucu----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----gugc-u gGA-----AU 5341 AGCAUCUCG( -acuuu--)C GGGGUGUC-u ggugcg---c -ccacg--ac uguC-CGUGA 5401 AAA-gggaag -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaacauu-- ---------- ----guuauu c-gc-acc-- cc-cguCCGU 5581 A|CC--UAUA UCC(GCAUCA )GG|UCU-CC AAGGU(UAGC A)GCCUCU-| GGUCg-||A- 5641 UA-G--AAUA AG-GUAG-AU A-AGGGAAGU CGGCAA-AAU -GGAUCCGUA AC(UUCG)GG 5701 ACAAGGAUU| GGCUCUGAG- ---------- ------------ -------CUC AGAACU|G(- --GAG)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAUAGCAU UGCG|A--UG G|CUU(---- 6661 gaaa)AGG-- ---------- --U-GUUGAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugau- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU AUCUAUCAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -A-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUCAC UCU-|AGUCC G---GCU-UU |GUGAAACGA CUUGAGGGGU 7021 GUAGGAUAAG UGGGAGC--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -UCCG)---- 7141 ---------G C-GACAGUGA AA-UACCACU |ACUCUUGA- -UGUUG-UUU UACUUAu--- 7201 ---------- ---------| --a GACAU-AGCC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGU 7561 A-C|AUCUGU (UAAAAGAUA AC-)ACAG-G U|G|U|CCC- AAGGC-GAAC |UCAAU-GAG 7621 -G(ACA---- GAAA)UCUCA UGUUGA|CC( A|A--AAGG) GGAAAAG-UU C-GCUUGAUU 7681 -UUGAUUU(u c--aguac-- )AAAUACAAA CUGU(-GAAA )GCAUGG|CC --UAU|CGA- 7741 UCCUuug--- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- aguc-ugu(- --aag-a--u au--)----- ---------- 7861 -----aca|g cuagAG-GUG UC|aGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-AGAUG(CA -GA-)AGUCU CAAA-GUGU| CGGAU(UGUU C)ACCCGCUA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGC-A<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->-ccga cg-uu-gu-G ACAGUAAUCC AAUU(UAGUA 8281 C(GAGA)GGA AC-)AGUUGG U|UCGGAUAC UUGGUUAAUG CGG|-CUAGU U(GAAA)AGC 8341 UAGUGCCGCG A-ACGUACC- AU-CCGU--U GGAUAAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCA-U GCUG---aac auca--acgu u --|------- ---------- 8701 ----uacauc |caucg(-ca gacga)cc-u ugac-----g c-a|cccggg uauuguaagc 8761 gc-gagagua gg----(cuu -gu------- ---------- ---------- ---------- 8821 ----)----c uuacgauc-c gc-|ugagau u|cua--ccc g--agg-u-g cu--cga-ug 8881 uguac|aaca uuccac-guu gucacgagua gaca~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.parva.2 9262 bp RNA RNA 20-AUG-1997 DEFINITION Theileria parva.; . ACCESSION AF013419 KEYWORDS . SOURCE Theileria parva. ORGANISM Theileria parva. REFERENCE 1 (bases 1 to 3294) AUTHORS Collins,N.E. TITLE Direct Submission JOURNAL Submitted (10-JUL-1997) Molecular Biology, Onderstepoort Veterinary Institute, Private Bag X5, Onderstepoort, Pretoria 0110, South Africa STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF013419 BASE COUNT 821 a 726 c 920 g 827 t 5968 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~--~~|~A( AACA)UA-UA AUUAAG-U-G G-AAGAAG-- --AGAAAAU( 541 AAA-U)AU-G AU|UCCCCUA GU---AAC(G GCGA)GCG-A A-----GAGG GAGG------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------a agugaaaauc cgu------- 781 -ugaa-(uuu ---)gcca-- ------acgg acuugug--- ----gucuug agcgg-cguu 841 gccagugg-u ag-c------ ---------- ---------- ---------- uuggu-g--- 901 ----cuaa-- --g-uuu-c( u-(ugggac- )a)gga-c-- ---------- --------AU 961 --|C(AGA)G |AGGG-(UGA CAAU)-CCCG UA|--cucg- -cuccuaug- -------ucu 1021 auccacgugu cgguacgc-c ugcaua---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGUGCU UUU(----UG 1141 GGAU)UGAAG CGCAAA---- uuGUGA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAGUCUU-- ---------- ---------- ---------- )CUC-AUAAG GCU----AAA 1381 UA-------- ---------- CGGGU-GUGA GACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGGUG -AAA-AGAAC UUU(ga-aa- )AGAG-UGUU --AAAAGUAC C-UGAAAC-U 1501 GCUGA-AAG< gg---aacca auugggacgu acgcuucc-g cugggugcca caguccu--- 1561 ---------- ---------g ucccg--gau acuuauccug g--------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------c au--ggucug agu--a--au 2221 cccuuugg-c ucag------ --ccag---- ---------- ---------- --------cg 2281 ug-ca----- uuggggu-gu c--gc--uaa acac------ ---------- ---------- 2341 ---agucgug ccaucucua- gugugacuag cagauuccag acucuacagc --cucucccc 2401 g-auguaaau accc-uau-- ---aa---gg uau-gcuc-c gacuggaguc ucgcu----- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 -----guc-- --------ug gag-uaca-u guuccaacug >------ACU CGU(CUUGAA 2581 AC)ACGA|GC CAAGG-AGUC UAACACUCGU GCAAGUGu-- uuggg----( ----u-ggca 2641 aa)------- ---------- ---c-ccgu- ---------- ---aCGCGAA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------aag cauggcc-uu gggac----- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----cuc--- ----)----- ---------- --gu-cucaa -uucacaugc 3061 g--------- ---------- ---------- ---------- -------gcc gg-uc----- 3121 gcc(u-uug- -)ggu----- -gga-uugcg c]-------- ---------A GGAGCAUGG- 3181 -UUG-UUAGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- GG|U-AGGAU GAAGUCAGGC 3241 (GAAA----- -----)GCCU GAU-GGAGGU CCA-CC---G CG-AUACUGA (CGUGCAAA) 3301 UCG-U-UCGU CAAACCUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUUCUUC CGAAGUUUCU --(CUCA)GG 3421 AUAGC-UGGA -auuc--|-- -|auggugcu uagcacu--g ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- -ucuc----- 3661 --aguUUUAC -C|AGG--UA AA-GCUAAUG AUUAGAGGu- -----aucgg ugg---(gcu 3721 gug)---ccu guuga-|CCU AUUC-UCAAA CUUUA-AACG |GGUAAGacc -cc-gucug- 3781 uugcuuaacu g-aacauucg gguuga---- ---------- ---------- ---------- 3841 ---------- ---------- -----aug-u G|AA-UUCUU -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAA UAA-UGGC-G AUGAGG(GA- UGCA)CCU-- AACGCUG--- GGUUAAG--G 3961 U|GCCU-AAA U-A--CC-UG CUCAU-ca-- --------ga uaccau---- -AAAAGGUGU 4021 U--GGUUCAU AUAGACA-GC AGGACGGUGG UC(AUGG-AA GUC)GAAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAACU GGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- CAAGCAGGU| U|-------- --ACCGAA-- --ACCCGGC| (- -----)-gcg gcaau-gUGU AGGA------ 4441 --AGA|-CG- UG-GG-CG-- --------u- -u-g-cgg-- c------GAA GUGU-----G 4501 GC-GC(GUGA -)GCCCACA- UGG|A-GCG| G--CGCCUA- GUGC-CGA-U CUUGGC|GG- 4561 UAGUAGUUAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)UUUUGAA |GACUGAAGU G-GAG|CAGG GUU|CUAUGU GA-ACU(-AU GUU)UG|GUC 4681 AUGGGUUAGC |-CGG-UCCU AAGC------ -------<-- --gccacg-- -uuaa---cu 4741 gcgugugagg u--------- -gac--uuu- -------g-- --guccgcuc c--------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----GC-GAA AGGGA-AU-C GGG(CUAAUA UU-)CCCGA| -GC----cgg gucgugg-au 4981 --[acugg-- ---------- ---------- ---------- -----gug(- -gcaa--)ca 5041 c--------- ---------- ---------- ---------- -----aa-g] uga-acuucu 5101 cgac-----g cag--gcgug gg-u-cccg- -GG-AAGC(G UUAUCUUU-) GCUUUU-|UA 5161 --cagucuc- ---------- gag|u-gc-c cugg--aauc ----ag(cuu au-)cuggc- 5221 ga-ua-ggg- acuc------ ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----gugc-u gGA-----AU 5341 AGCAUCUCG( -acuuu--)C GGGGUGUC-u ggugcg---c -ccacg--ac uguC-CGUGA 5401 AAA-gggaag -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaacauu-- ---------- ----guuauu c-gc-acc-- cc-cguCCGU 5581 A|CC--UAUA UCC(GCAUCA )GG|UCU-CC AAGGU(UAGC A)GCCUCU-| GGUCg-||A- 5641 UA-G--AAUA AG-GUAG-AU A-AGGGAAGU CGGCAA-AAU -GGAUCCGUA AC(UUCG)GG 5701 ACAAGGAUU| GGCUCUGAG- ---------- ------------ -------CUC AGAACU|G(- --GAG)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAUAGCAU UGCG|A--UG G|CUU(---- 6661 gaaa)AGG-- ---------- --U-GUUGAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugau- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU AUCUAUCAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -A--AU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUCAC UCU-|AGUCC G---GCU-UU |GUGAAACGA CUUGAGGGGU 7021 GUAGGAUAAG UGGGAGC--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -UCCG)---- 7141 ---------G C-GACAGUGA AA-UACCACU |ACUCUUGA- -UGUUG-UUU UACUUAu--- 7201 ---------- ---------| --a GACAU-AGCC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGU 7561 A-C|AUCUGU (UAAAAGAUA AC-)ACAG-G U|G|U|CCC- AAGGC-GAAC |UCAAU-GAG 7621 -G(ACA---- GAAA)UCUCA UGUUGA|CC( A|A--AAGG) GGAAAAG-UU C-GCUUGAUU 7681 -UUGAUUU(u c--aguac-- )AAAUACAAA CUGU(-GAAA )GCAUGG|CC --UAU|CGA- 7741 UCCUuug--- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- aguc-ugu(- --aag-a--u au--)----- ---------- 7861 -----aca|g cuagAG-GUG UC|aGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-AGAUG(CA -GA-)AGUCU CAAA-GUGU| CGGAU(UGUU C)ACCCGCUA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGC-A<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->-ccga cg-uu-gu-G ACAGUAAUCC AAUU(UAGUA 8281 C(GAGA)GGA AC-)AGUUGG U|UCG-AUAC UUGGUUAAUG CGG|-CUAGU U(GAAA)AGC 8341 UAGUGCCGCG A-AGCUACC- AU-CCGU--U GGAUAAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCA-U GCUG---aac auca--acgu u --|------- ---------- 8701 ----uacauc |caucg(-ca gacga)cc-u ugac-----g c-a|cccggg uauuguaagc 8761 gc-gagagua gg----(cuu -gu------- ---------- ---------- ---------- 8821 ----)----c uuacgauc-c gc-|ugagau u|cua--ccc g--agg-u-g cu--c~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.parva.3 9262 bp RNA RNA 11-JAN-191 DEFINITION Theileria parva str. (individual_isolate Mugugasub_species parva). ACCESSION No information KEYWORDS No information. SOURCE Theileria parva str. (individual_isolate Mugugasub_species parva). ORGANISM Theileria parva. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L26331 LOCUS THESSURNAA 1276 bp ds-DNA INV 29-NOV-1993 DEFINITION Theileria parva 5.8S ribosomal RNA and large and small ribosomal subunits gene sequence. ACCESSION L26331 KEYWORDS 5.8S ribosomal RNA; ribosomal RNA large subunit; ribosomal RNA small subunit. SOURCE Theileria parva (individual_isolate Mugugasub_species parva, ) DNA. ORGANISM Theileria parva Eukaryota; Animalia; Protozoa; Apicomplexa; Sporozoasida; Coccidiasina; Piroplasmida; Theileriidae. REFERENCE 1 (bases 1 to 1276) AUTHORS Kibe,M.M.M., Ole-Moiyoi,O.O.K., Nene,V.V., Khan,B.B., Allsopp,B.B.A., Collins,N.N.E., Morzaria,S.S.P., Gobright,E.E.I. and Bishop,R.R.P. TITLE Organization of Theileria parva ribosomal RNA genes: Evidence for two polymorphic coding regions JOURNAL Unpublished (1994) COMMENT NCBI gi: 430736 FEATURES Location/Qualifiers rRNA <1..80 /standard_name="SSU rRNA" /product="ribosomal RNA small subunit" /note="putative" rRNA 659..812 /product="5.8S ribosomal RNA" /note="putative" rRNA 1164..>1276 /standard_name="LSU rRNA" /product="ribosomal RNA large subunit" /note="putative" source 1..1276 /organism="Theileria parva" /isolate="Muguga" /sub_species="parva" /germline /sequenced_mol="DNA" BASE COUNT 354 a 242 c 299 g 381 t ORIGIN BASE COUNT 41 a 38 c 36 g 39 t 9108 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AAACUU UCAGCGGUGG AUG|UCUUGG 61 |CUCACAC|A A|-CGAUGAA GGA|CGCA(- -GCGA-AG)U |GC-GAUAAG CA-uugu|[- 121 gacuugcaga cuucugcgaa u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---caaca|G AUUUCU-GAA Cgu-(auuag )-a-c|acac 241 cac---cucu g(-------- ---------- ---------- ------cuug ---)ca---- 301 ---c-guggu ---acuccca -u-uu-cagu g-----(--- ---------/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 901 ~~~~~~~~~~ ~~~-~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 --|~(~~~)~ |~~~~-(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~-~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~-------- --------~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~------ -~~~~~~~-- -----~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~(~-~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~]~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 3361 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ --(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~-|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~--~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~-~~~~~ ~~~~~~~~~~ ~~~~-~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~-- ~~~~~~~--~ 3961 ~|~~~~~~~~ ~-~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~(~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~-- -~~~~~~~~~ ~~~~~~~~~~ ~----~-~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~(~~ ~~~-)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- (~~~~~)~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-->(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ <~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~~ ~~~~~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.taurotra 9262 bp RNA RNA 11-JAN-191 DEFINITION Theileria taurotragi. ACCESSION No information KEYWORDS No information. SOURCE Theileria taurotragi. ORGANISM Theileria taurotragi. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L28037 LOCUS THENRR 1651 bp ds-DNA INV 31-JAN-1994 DEFINITION Theileria taurotragi 28S ribosomal DNA (28S rDNA). ACCESSION L28037 KEYWORDS 28S rDNA; 28S ribosomal DNA. SOURCE Theileria taurotragi DNA. ORGANISM Theileria taurotragi Eukaryota; Animalia; Protozoa; Apicomplexa; Sporozoasida; Coccidiasina; Piroplasmida; Theileriidae. REFERENCE 1 (sites) AUTHORS Bishop,R.P., Allsopp,B.A., Spooner,P.R., Sohanpal,B.K., Morzaria,S.P. and Gobright,E.I. TITLE Theileria: Species discrimination using oligonucleotides derived from large subunit ribosomal RNA sequences JOURNAL Unpublished (1994) COMMENT Reference 1 reports bases 1 to 747. FEATURES Location/Qualifiers rRNA <1..>1651 /standard_name="large subunit ribosomal RNA (LSU rRNA)" /product="28S ribosomal RNA" /gene="28S rRNA" /citation=[1] /note="sequence starts approximately 30 bp downstream of 5' end of LSU rRNA coding sequence; putative" source 1..1651 /organism="Theileria taurotragi" /germline /sequenced_mol="DNA" BASE COUNT 387 a 364 c 497 g 403 t ORIGIN BASE COUNT 418 a 386 c 519 g 422 t 7517 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ aauacaaCUU UCAGCAACGG AUG|UCUUGG 61 |CUCCCAC|A A|-CGAUGAA GAA|CGCA(- -GCGA-AA)U |GC-GAUACG UA-augc|[- 121 gaauugcaga auuccgcgag u--------- ---------- ---------- -------]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~-)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~--~~|~~( ~~~~)~~-~~ ~~~~~~~~~G G-AAGAAG-- --AGAAAAU( 541 AAA-U)AU-G AU|UCCCCUA GU---AAC(G GCGA)GCG-A A-----GCGG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------a agugagaauc c--------- 781 -guug-(uca g--)-cggc- ------acgg acuugug--- ----gccuug agcgg-cguu 841 gccagugg-u agcu------ ---------- ---------- ---------- uggag-c--- 901 ----c-aa-- --g-uuu-c( u-(ugggac- )a)gga-c-- ---------- --------AU 961 --|C(AGA)G |AGGG-(UGA CAAU)-CCCG UG|--ucu-- -gcuccugu- ------gucu 1021 auccacgugu cgguacgc-c ugcaua---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGUGCU UUU(----UG 1141 GGAU)UGAAG CGCAAA---- uuGUGA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAGUCUU-- ---------- ---------- ---------- )CUC-AUAAG GCU----AAA 1381 UA-------- ---------- CGGGU-GUGA GACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G--aagGGUG -AAA-AGAAC UUU(ga-aa- )AGAG-UGUU --AAAAGUAC C-UGAAAC-U 1501 GCUGA-AGG< gg---aacca auuggggcgu acgcuucc-a cugggugccg cuuuccu--- 1561 ---------- ---------g ucccg--gac acugguccug gcguggucug aguaaucccu 1621 uugguucagc cagcgugcau uggagu-guc gccagacccg gccucucauc ccc-a-gugu 1681 gacuggcgga ucucuguucc ugcggcuucg cuccgauguu uccugcuccg acggagccuc 1741 gcu------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 -----guc-- --------ug cag-uaca-u gucccaacug >------ACU CGU(CUUGAA 2581 AC)ACGA|GC CAAGG-AGUC UAACACUCGU GCAAGUGu-- uuggg----( ----u-ggca 2641 aa)------- ---------- ---c-ccgu- ---------- ---aCGCGAA AU(GAAG)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------aag cauggcc-uc ggggg----- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- cuuc-cucga -cucacaugc 3061 g--------- ---------- ---------- ---------- -------gcc gg-ucg---- 3121 cc-(u-uuu- -)-ggug--- -ga--uugcg c]-------- ---------A GGAGCAUGG- 3181 -UUG-UUAGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- GG|U-AGGAU GAAGUCAGGC 3241 (GAAA----- -----)GCCU GAU-GGAGGU CCG-CC---G CG-AUACUGA (CGUGCAAA) 3301 UCG-U-UCGU CAAACCUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUUCUUC CGAAGUUUCU --(CUCA)GG 3421 AUAGC-UGGA -AUUc--|-- -|-acugugc guagcacugu ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- cuc------- 3661 --aguUUUAC -C|AGG--UA AA-GCUAAUG AUUAGAGGu- -----aucgg uggg--(-cu 3721 gug)--ccug u-uga-|CCU AUUC-UCAAA CUUUA-AAUG |GGUAAGacc -ccgucugu- 3781 ugcuuaagug aacauucgg- gcuga----- ---------- ---------- ---------- 3841 ---------- ---------- -----aug-u g|AA-UUCUA -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAA UAA-UGGC-G AUGAGG(GA- UGCA)CCU-- AACGCUG--- GGUUAAG--G 3961 U|GCCU-AAA U-A--CC-UG CUCAU-ca-- --------ga uaccau---- -AAAAGGUGU 4021 U--GGUUCAU AUAGACA-GC AGGACGGUGG UC(AUGG-AA GUC)GAAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAACU GGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- CAAGCAGGU| U|-------- --ACCGAA-- --ACCCGGC| (- -----)-gcg gcaau-gUGU AGGA------ 4441 --AGA|-CG- UG-GG-CG-- --------u- -u-g-ccg-- c------AAA GUGC-----G 4501 GU-GC(GUGA -)GCUCGCA- UGG|A-GCG| G--CGCCUA- GUGC-CGA-U CUUGGC|GG- 4561 UAGUAGUUAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)UUUUGAA |GACUGAAGU G-GAG|CAGG GUU|CCAUGU GA-ACU(-AU GUU)UG|GAC 4681 AUGGGUUAGC |-CGG-UCCU AAGC------ -------<-- ------g-cc agcuua-acu 4741 gcgugugagg ugac-uuug- --guc--g-- -------ucc ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----GC-GAA AGGGA-AU-C GGG(CUAAUA UU-)CCCGA| -GC----cgg gucgugg-au 4981 --[acugg-- ---------- ---------- ---------- -----gug(- -gcaa--)ca 5041 c--------- ---------- ---------- ---------- -----aa-g] uga-acuucu 5101 cgac-----g cag--gcgug gg-u-cccg- -GG-AAGC(G UUAUCUUU-) GCUUUU-|UA 5161 A~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~(~~ ~~~-)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- (~~~~~)~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-->(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ <~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~~ ~~~~~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (4)-Ciliop 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS P.caudatum 9262 bp RNA RNA 30-SEP-1988 DEFINITION Paramecium caudatum.; 28S ribosomal RNA. ACCESSION M19218 J03648 KEYWORDS 28S ribosomal RNA. SOURCE Paramecium caudatum. ORGANISM Paramecium caudatum. REFERENCE 1 (bases 1 to 366) AUTHORS .-P.P. and Adoutte,A. Baroin,A., Perasso,R., Qu,L.-H., Brugerolle,G., Bachellerie,J TITLE rapid sequencing of a portion of 28S ribosomal RNA Partial phylogeny of the unicellular eukaryotes based on JOURNAL Proc. Natl. Acad. Sci. U.S.A. 85, 3474-3478 (1988) STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: M19218 Draft entry and printed copy of sequence for [1] kindly provided by A.Baroin, 26-APR-1988. NCBI gi: 175585 BASE COUNT 127 a 64 c 90 g 84 t 8897 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~nc )--acaccug aaaucaag-c aag----AUC 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UC AGUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-A)AG-G AU|UGCCUUA GU---AGU(G GCGA)AUG-A A-----CCGG CAUC------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -------aag uguaaa--uc 781 ugaggc(auc aa-)gucuua ga-------- ----auugua aucuauaggc cuuuuaggga 841 ----aguc-- ---------- ---------- ---------- ---------- ac-gg-uccu 901 agca-uaa-- --g-uuu-c( u-(ugaaaa- )g)gaa-u-- ---------- --------GC 961 --|C(AAA)G |AGGG-(UAA AAGC)-CCCG UA|--uuugg uuagga--cu g------gau 1021 gua------- -ccgaagg-g uuccaa---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GUU(----UG 1141 GGAU)UGCAG CCUAAA---- auGGGA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 AUAAACUU-- ---------- ---------- ---------- )CUU-CUAAA GCU----AAA 1381 UA-------- ---------- uuuau-GGGA AACCGAUAGC AAAC-AAGUA CU(ACGA)A- 1441 G-GAAAGA~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~--~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~- -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~-~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~---~ ~~~~~~~~~~ 2641 ~~~------- ---------- ---~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~--------- ---------- ---------- ---------- ---------- ---------~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~- ~~|~-~~~~~ ~~~~~~~~~~ 3241 ~~~~~----- -----~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--~ ~--------- ---------- ---~~~~~-- 3361 --~~~--~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ --~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~--~~ ~~-~~~~~~~ ~~~~~~~~~- -~~~~~~~~~ ~~~~~-~~~~ 3721 ~~~~-~~~~~ ~~~~~-|~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ -~~~~~~~~- 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ---------~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~-~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ 3901 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~~--~ 3961 ~~~~~~~~~~ ~-~~-~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---- ~~~~~~~~~~ 4021 ~--~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~-~~~ ~~~--~~~~~ 4141 ~~~~~~-~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~-- -~~~~~~~~~ ~~~~~~~~-~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|-~~~ ~~~~~~~~-- -~~~~~~~~~ ~~-~~~~~~~ ~----~-~~~ ~~~~----~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ -~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~-~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~---- ---------- --------~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~-~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~- -----~~~~~ ~~~~~~~~~~ ~~-----~-- -~---~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 5101 ~~~~----~~ ~~~-~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-|~~ 5161 ~~~~~~~~~- ------~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ---~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ---------- ---------- ---------- 5281 ---------- ---------- -------~~~ ~~~~~~~~~- ----~~~~~~ ~~~-----~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~--~~ ~~~~-~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~-~~~~~~~ 5581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 5641 ~~~~--~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ -~~~~~~~~~ ~~~~~~~~~~ 5701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 5821 ~~~~~~~~-~ ~~~-~~~~~~ ~~-~~~~~~~ ~~-------- ---------- ---~~~~~~~ 5881 ~~-~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~---~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~-~~~ ~|~~~~~--~ 6661 ~~~~~~~~-- ---------- --~-~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 6721 ~~-~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6841 ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~-~~~-~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~-|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~--~~- -~~~~~~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ -~~~~~-~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7561 ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~--~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~|~~~- 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~-~~~~ ~~~-~----- ---------- 7861 -----~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ 7981 ~~~~~~~|~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 8281 ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 8701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~--~~~-~~~ ~~~-~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS P.primaure 9262 bp RNA RNA 30-SEP-1988 DEFINITION Paramecium primaurelia.; 28S ribosomal RNA. ACCESSION M19219 J03648 KEYWORDS 28S ribosomal RNA. SOURCE Paramecium primaurelia. ORGANISM Paramecium primaurelia. REFERENCE 1 (bases 1 to 366) AUTHORS Baroin,A., Perasso,R., Qu,L.-H., Brugerolle,G., Bachellerie,J .-P.P. and Adoutte,A. TITLE Partial phylogeny of the unicellular eukaryotes based on rapid sequencing of a portion of 28S ribosomal RNA JOURNAL Proc. Natl. Acad. Sci. U.S.A. 85, 3474-3478 (1988) STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: M19219 Draft entry and printed copy of sequence for [1] kindly provided by A.Baroin, 26-APR-1988. NCBI gi: 175586 BASE COUNT 126 a 64 c 92 g 83 t 8897 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~nc )--acaccug aaaucaag-c aag----AUC 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UC AGUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-A)AG-G AU|UGCCUUA GU---AGU(G GCGA)AUG-A A-----CCGG CAAU------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -------aag uguaaa--uc 781 ugaggc(auc aa-)gucuua ga-------- ----auugua aucuauaggc cuuuuaggga 841 ----agcc-- ---------- ---------- ---------- ---------- au-gg-ucuu 901 agca-uaa-- --g-uuc-c( c-(ugaaaa- )g)gga-u-- ---------- --------GC 961 --|C(AAA)G |AGGG-(UAA AAGC)-CCCG UA|--uuugg uuagga--cu g------ggu 1021 gua------- -ccgaagg-g uuccaa---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GUU(----UG 1141 GGAU)UGCAG CCUAAA---- auGGGA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 AUAAACUU-- ---------- ---------- ---------- )CUU-CUAAA GCU----AAA 1381 UA-------- ---------- uuuau-GGGA AACCGAUAGC AAAC-AAGUA CU(ACGA)A- 1441 G-GAAAGA~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~--~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~- -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~-~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~---~ ~~~~~~~~~~ 2641 ~~~------- ---------- ---~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~--------- ---------- ---------- ---------- ---------- ---------~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~- ~~|~-~~~~~ ~~~~~~~~~~ 3241 ~~~~~----- -----~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--~ ~--------- ---------- ---~~~~~-- 3361 --~~~--~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ --~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~--~~ ~~-~~~~~~~ ~~~~~~~~~- -~~~~~~~~~ ~~~~~-~~~~ 3721 ~~~~-~~~~~ ~~~~~-|~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ -~~~~~~~~- 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ---------~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~-~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ 3901 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~~--~ 3961 ~~~~~~~~~~ ~-~~-~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---- ~~~~~~~~~~ 4021 ~--~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~-~~~ ~~~--~~~~~ 4141 ~~~~~~-~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~-- -~~~~~~~~~ ~~~~~~~~-~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|-~~~ ~~~~~~~~-- -~~~~~~~~~ ~~-~~~~~~~ ~----~-~~~ ~~~~----~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ -~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~-~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~---- ---------- --------~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~-~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~- -----~~~~~ ~~~~~~~~~~ ~~-----~-- -~---~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 5101 ~~~~----~~ ~~~-~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-|~~ 5161 ~~~~~~~~~- ------~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ---~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ---------- ---------- ---------- 5281 ---------- ---------- -------~~~ ~~~~~~~~~- ----~~~~~~ ~~~-----~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~--~~ ~~~~-~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~-~~~~~~~ 5581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 5641 ~~~~--~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ -~~~~~~~~~ ~~~~~~~~~~ 5701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 5821 ~~~~~~~~-~ ~~~-~~~~~~ ~~-~~~~~~~ ~~-------- ---------- ---~~~~~~~ 5881 ~~-~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~---~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~-~~~ ~|~~~~~--~ 6661 ~~~~~~~~-- ---------- --~-~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 6721 ~~-~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6841 ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~-~~~-~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~-|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~--~~- -~~~~~~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ -~~~~~-~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7561 ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~--~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~|~~~- 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~-~~~~ ~~~-~----- ---------- 7861 -----~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ 7981 ~~~~~~~|~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 8281 ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 8701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~--~~~-~~~ ~~~-~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.pyrifo.1 9262 bp RNA RNA 11-JAN-191 DEFINITION Tetrahymena pyriformis. ACCESSION No information KEYWORDS No information. SOURCE Tetrahymena pyriformis. ORGANISM Tetrahymena pyriformis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: M10752 LOCUS TEYRRB 154 bp ss-rRNA RNA 15-JUN-1988 DEFINITION T.pyriformis 5.8S rRNA. ACCESSION M10752 KEYWORDS ribosomal RNA. SOURCE T.pyriformis ribosomal RNA. ORGANISM Tetrahymena pyriformis Eukaryota; Animalia; Metazoa; Ciliophora; Oligohymenophora; Hymenostomata; Hymenostomatida; Tetrahymenina; Tetrahymenidae. ID TPRNALSU standard; DNA; INV; 3341 BP. AC X54004; DE Tetrahymena pyriformis gene for 26S large subunit ribosomal RNA XX OC Eukaryota; Animalia; Metazoa; Ciliophora; Oligohymenophora; OC Hymenostomata; Hymenostomatida; Tetrahymenina; Tetrahymenidae. XX BASE COUNT 1091 a 652 c 909 g 843 t 5767 others ORIGIN 1 |--------- ---------- ---------- -AGAAAACUU UCAACGGUGG AUA|UCUUGG 61 |UUCCCGU|G A|-CGAUGAA GAA|CGCA(- -GCGA-AA)U |GC-GAUACG UA-augc|[- 121 gaauugcaga a--ccgcgag u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---caaca|G AUCUUU-GAA Agc-(aagug )-g-u|ggag 241 gug------- -(-------- ---------- ---------- -----uaaa- ---)------ 301 --aa-ccuuc ---auguuug -u-au-uagu gug---(--- ---gca---/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --------cu )--acaccug aua-caag-c aAG----AUU 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UC AGUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-U)AG-G AU|AGCCCCA GU---AAU(G GCGA)AUG-A A-----CAGG CUAA------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -------aag ugaaaa-ucu 781 g-----(gaa a--)------ ---------- cagaauugua aucuaaagag --uuaaccca 841 a---agcu-- ---------- ---------- ---------- ---------- aa-gc-uccu 901 cgca-uaa-- --g-uuc-c( u-(uggaac- )a)gga-c-- ---------- --------GU 961 --|C(AAA)G |AGGG-(UGA CAAC)-CCCG UA|--gucgg ugaggaaugc u------ggu 1021 gaa------- -gggaagg-c uucaaa---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GUU(----UG 1141 GGAU)UGCAG CCCUAA---- guGGGA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 AUAAACUU-- ---------- ---------- ---------- )CUU-CUAAA GCU----AAA 1381 UA-------- ---------- UACAC-GGGA GACCGAUAGC GAAC-AAGUA CU(GCGA)A- 1441 G-GAAAGAUG -AAA-AGAAC UUU(ga-aa- )AGAG-GGUU --AAAAG-AC U-UGAAAC-C 1501 GUUGAGAAG< -g---aagcu guagaagagc a--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --auaaacug 2161 gacggcgcau aagggggaag uguuacucac ugcggagucg au(acg--aa ag)--gucga 2221 ugaguaagga aaggacaca- gaacuu-cu- -acgccgguc agaa---gac aaaa-|ugag 2281 uucag-auug aaggaguca- -ccugagau- -cggggg--- -----(ucaa -)-------- 2341 ---accaga- ucaaaagg-- ---gaaacuu ca-gacu-gg acugagg--- g---gcc--- 2401 ---------- -----(uaag ----)----- ---------g gcg------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------a 2521 uuuu-guc-- ---------- aaa-aug--- gcuucuacug >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAUCAAUUAA GCGAGUGa-u agggu----( ------ggag 2641 aa)------- ---------- ---a-cccg- ---------- --ucCGCGAA AC(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---guacaag gugccaa-gc c--------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----gcaa-- ----)----- ---------- -------ggu -agcagcauc 3061 a--------- ---------- ---------- ---------- -------ccc ga-ccu-aga 3121 uu-(c-ucc- -)-gaagaa- gggu-ucgag g]-------- ---------A AGAGCUUAA- 3181 -UUG-UUAGG ACCCGAAAGA U-GGUG-AAC UACG-CUUG- AA|U-AGGGU GAAGCCAGGG 3241 (GAAA----- -----)CUCU GGU-GGAAGC UCG-UA---G CG-AUACUGA (CGUGCAAA) 3301 UCG-U-UCGU CAAAUUUGAG UGUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCU --(CUCA)GG 3421 AUAGC-AAGA -GCAa--|-- -|-gua---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------c 3661 gcaguUUUAU -U|AGG--UA AA-GCGAAUG AUUAGAGGA- -----CUCGG GGUU--(cc- 3721 aag)--AAUC U-CGA-|CCU AUUC-UCAAA CUUUA-AAUU |GGUAAGagc -cgcggagu- 3781 uuucuuaauu --gaacucuc ggguag---- ---------- ---------- ---------- 3841 ---------- ---------- ----AAUgca g|UG-CUCUU -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGAGG(GA- UGAA)CCU-- AACGUUG--- AGAUAAG--G 3961 C|GCCC-AAA U-G--CA-CG CUCAU-ca-- --------ga uaccac---- -AAAAGGUGU 4021 U--GGUUCAU AUGGACA-GC AGGACGGUGG CU(AUGG-AA GUU)AGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- GAAGCGUGU| U|-------- --GCCGAU-- --ACUCAAC| (- -----)-gcu uugau-gAGU AGGA------ 4441 --GGG|-CG- UG-AU-CG-- --------u- -u-G-CCU-- a------GAA GUAU------ 4501 ugGGC(GUGA -)GCU-AUA- UGG|A-GCA| G--CGAUUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GACCGAAGU G-GAG|AAGG GUU|CCAUGA GA-ACA(-GC AAU)UG|UUC 4681 AUGGGUUACU |-CGA-UCCU AAGA------ -------<-- cauaggu-ua acuccu-ugc 4741 aauacaagaa gacgu-ucuc guuuucguu- -------g-- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-AAA AGGGA-AU-G AGG(UUAAUA UU-)CCUCA| -AG----cug g-acgug-gu 4981 au[ag----- ---------- ---------- ---------- -a---gug(- -guaa--)ca 5041 c--------- ---------- ---------- ---------- ------a-a] agaaacccgg 5101 agac-----g uca--gcagg ag-c-cacu- -GG-AAGA(G UUAUCUUU-) UCUUUU-|UA 5161 A-cauacu-- ---------- aug|g---cc auga--aaau ----gg(auu au-)ccaga- 5221 ga-ua-ucgg cugu------ ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- --------a- ----cgua-u gGC-----AG 5341 AGCAGCUCA( -cccua--)A GAGCUGUC-a guugcg---c -uucug--au gacC-CUUGA 5401 AAA-ucuggg g<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- gagacaua-- ---------- ----au--uu --ca-cg--- cc-aguUCGU 5581 A|CC--CAUA ACC(GCAUCA )GG|UCU-CC AAGGU(UAGC A)GCCUCU-| GGUCC-||A- 5641 UA-G--AACA AU-GUAG-AU A-AGGGAAGU CGGCAA-AUU -GGAUCCGUA AC(UUCG)GG 5701 AUAAGGAUU| GGCUCUGAG- ---------- ------------ -------CUC AGAACU|G(- --AAG)CGGA 6601 CAAAGGUAAU C|-CGACUGU UU(AAUAA)A AACAAAGCAU UGUG|A--CG G|CCU(---- 6661 caac)AGG-- ---------- --U-GAUGAC ACAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugac- ----(gcaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA UGAGAUUACC ACUGU-CCCU AUCUACUAUC 6901 UA|GCGAACC C|aca-gCUA AG(GGAA-CG GG)CUUAGAA -U-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCU A---ACU-UU |GUGAAAUGG CACGUGGGGU 7021 AUAGCCUAGG UGGGAGA--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -GAAA)---- 7141 ---------U C-GAGCCUGU AA-AACCACU |ACCCACGU- -AGUCA-UUU UGCUUAu--- 7201 ---------- ---------| --a GACAU-GGUU A-GGGG-GGG AG-UUUGUCU G(GGG)CGGA 7561 A-U|GCCUGU (UAAACCAUA AC-)GCAG-G C|G|U|CCU- AAGUG-UAGC |UCAGU-GAG 7621 -A(ACG---- GAAA)UCUCA CGUAGA|AC( A|A--AAGG) GUAAAAG-CU A-CAUUGAUU 7681 -UUGAUUU(u c--aguau-- )GAAUACAAA CCGC(-GAAA )GCGUGG|CC --UAU|CGA- 7741 UCCUUUA--- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -ACU-UUA(- -CAAG-U--U U---)----- ---------- 7861 -----UAA|G CUAGAG-GUG UC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGA G(UUCAU)AU CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GA-)AUUCA CAAC-GUGU| CGGAU(UGUU C)ACCCGCUA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-a<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->-acga ug-uu-gc-G ACAGUAAUUU AAGU(UAGUA 8281 C(GAGA)GGA AC-)CCUUAA A|UCAGAUAA UUGGUAAAUA CGG|-UUGUC U(GAAA)AGA 8341 CAAUGCCGUG A-AGCUACC- AU-CUGU--U GGAUUAUGAC U(GAAGGCCU C-U-A)AGUC 8401 AGAAUCCA-U GCUG--g-aa aGCA--AUGU C --|------- ---------- 8701 --cguaaauc |uuuug(-ua gacga)cu-u aaua-----c g-g|aacggg uauuguaagu 8761 au-gagagua ga----(aua -u-------- ---------- ---------- ---------- 8821 ----)----u cuacgauc-u gc-|ugagau u|cag--ccc g--ucu-c-c uu--aga-uu 8881 uau--|---- ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.pyrifo.2 9262 bp RNA RNA 30-SEP-1988 DEFINITION Tetrahymena pyriformis.; 28S ribosomal RNA. ACCESSION M19225 J03648 KEYWORDS 28S ribosomal RNA. SOURCE Tetrahymena pyriformis. ORGANISM Tetrahymena pyriformis. REFERENCE 1 (bases 1 to 357) AUTHORS .P. and Adoutte,A. Baroin,A., Perasso,R., Qu,L.-H., Brugerolle,G., Bachellerie,J.-P TITLE sequencing of a portion of 28S ribosomal RNA Partial phylogeny of the unicellular eukaryotes based on rapid JOURNAL Proc. Natl. Acad. Sci. U.S.A. 85, 3474-3478 (1988) STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: M19225 Draft entry and printed copy of sequence for [1] kindly provided by A.Baroin, 26-APR-1988. NCBI gi: 176122 BASE COUNT 127 a 67 c 93 g 68 t 8907 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~nn )--acaccug aua-caag-c aag----AUU 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UC AGUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-U)AG-G AU|AGCCCCA GU---AAU(G GCGA)AUG-A A-----CAGG CUAA------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -------aag ugaaaa---u 781 cu-g--(gaa a--)---cag a--------- ----auugua aucuaaagag --uuaaccca 841 a---agcu-- ---------- ---------- ---------- ---------- aa-gc-uccu 901 cgca-uaa-- --g-uuc-c( u-(uggaac- )a)gga-c-- ---------- --------GU 961 --|C(AAA)G |AGGG-(UGA CAAC)-CCCG UA|--gucgg ugaggaaugc u------ggu 1021 gaa------- -ggggagg-c uucaaa---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GUU(----UG 1141 GGAU)UGCAG CCCUAA---- guGGGA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 AUAAACUU-- ---------- ---------- ---------- )CUU-CUAAA GCU----AAA 1381 UA-------- ---------- UACAC-GGGA GACCGAUAGC GAAC-AAGUA CU(GCGA)A- 1441 G-GAAAGA~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~--~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~- -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~-~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~---~ ~~~~~~~~~~ 2641 ~~~------- ---------- ---~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~--------- ---------- ---------- ---------- ---------- ---------~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~- ~~|~-~~~~~ ~~~~~~~~~~ 3241 ~~~~~----- -----~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--~ ~--------- ---------- ---~~~~~-- 3361 --~~~--~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ --~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~--~~ ~~-~~~~~~~ ~~~~~~~~~- -~~~~~~~~~ ~~~~~-~~~~ 3721 ~~~~-~~~~~ ~~~~~-|~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ -~~~~~~~~- 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ---------~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~-~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ 3901 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~~--~ 3961 ~~~~~~~~~~ ~-~~-~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---- ~~~~~~~~~~ 4021 ~--~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~-~~~ ~~~--~~~~~ 4141 ~~~~~~-~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~-- -~~~~~~~~~ ~~~~~~~~-~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|-~~~ ~~~~~~~~-- -~~~~~~~~~ ~~-~~~~~~~ ~----~-~~~ ~~~~----~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ -~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~-~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~---- ---------- --------~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~-~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~- -----~~~~~ ~~~~~~~~~~ ~~-----~-- -~---~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 5101 ~~~~----~~ ~~~-~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-|~~ 5161 ~~~~~~~~~- ------~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ---~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ---------- ---------- ---------- 5281 ---------- ---------- -------~~~ ~~~~~~~~~- ----~~~~~~ ~~~-----~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~--~~ ~~~~-~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~-~~~~~~~ 5581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 5641 ~~~~--~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ -~~~~~~~~~ ~~~~~~~~~~ 5701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 5821 ~~~~~~~~-~ ~~~-~~~~~~ ~~-~~~~~~~ ~~-------- ---------- ---~~~~~~~ 5881 ~~-~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~---~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~-~~~ ~|~~~~~--~ 6661 ~~~~~~~~-- ---------- --~-~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 6721 ~~-~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6841 ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~-~~~-~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~-|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~--~~- -~~~~~~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ -~~~~~-~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7561 ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~--~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~|~~~- 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~-~~~~ ~~~-~----- ---------- 7861 -----~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ 7981 ~~~~~~~|~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 8281 ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 8701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~--~~~-~~~ ~~~-~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.thermoph 9262 bp RNA RNA 11-JAN-191 DEFINITION Tetrahymena thermophila. ACCESSION No information KEYWORDS No information. SOURCE Tetrahymena thermophila. ORGANISM Tetrahymena thermophila. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X54512 LOCUS TTRDNAG 10315 bp DNA INV 10-APR-1991 DEFINITION T. thermophila rdn A+ gene for pre-RNA, 17S rRNA, 5.8S rRNA, 26S rRNA. ACCESSION X54512 KEYWORDS 17S ribosomal RNA; 26S ribosomal RNA; 5.8S ribosomal RNA; rdn A+ gene. SOURCE Tetrahymena thermophila ORGANISM Tetrahymena thermophila Eukaryota; Animalia; Protozoa; Ciliophora; Oligohymenophora; Hymenostomata; Hymenostomatida; Tetrahymenina; Tetrahymenidae. REFERENCE 1 (bases 1 to 10315) AUTHORS Engberg,J. TITLE Direct Submission JOURNAL Submitted (29-AUG-1990) Engberg J., Dept. of Biochemistry B, Panum Institute, University of Copenhagen, 3 Blegdamsvej, DK-2200 Copenhagen N, Denmark. REFERENCE 2 (bases 1 to 10315) AUTHORS Engberg,J. and Nielsen,H. TITLE Complete sequence of the extrachromosomal rDNA molecule from the ciliate Tetrahymena thermophila strain B1868VII JOURNAL Nucleic Acids Res. 18, 6915-6919 (1990) COMMENT Data kindly reviewed (24-DEC-1990) by Engberg J. FEATURES Location/Qualifiers source 1..10315 /organism="Tetrahymena thermophila" /strain="B1868VII" /dev_stage="rearranged (amplified)" /map="extrachromosomal" rRNA 2535..4287 /gene="rdn A+" /product="17S rRNA" rRNA 4418..4571 /gene="rdn A+" /product="5.8S rRNA" rRNA join(4749..7009,7423..8508) /gene="rdn A+" /product="26S rRNA" prim_transcript 1887..8522 /gene="rdn A+" misc_feature 6342..6345 /note="hidden break region" intron 7010..7422 BASE COUNT 3586 a 1617 c 2076 g 3036 t ORIGIN BASE COUNT 1093 a 659 c 910 g 839 t 5761 others ORIGIN 1 |--------- ---------- ---------- -AGAAAACUU UCAACGGUGG AUA|UCUAGG 61 |UUCCCGU|G A|-CGAUGAA GAA|CGCA(- -GCGA-AA)U |GC-GAUACG CA-augc|[- 121 gaauugcaga a--ccgcgag u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---cauca|G AUCUUU-GAA Cgc-(aagug )-g-u|ggag 241 gug------- -(-------- ---------- ---------- -----uaaa- ---)------ 301 --aa-ccuuc ---auguuug -u-uu-cagu gug---(--- ---gaa---/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --------cu )--acaccug aaa-caag-c aAG----AUU 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UC AGUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-U)AG-G AU|AGCCCCA GU---AAU(G GCGA)AUG-A A-----CAGG CUAA------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -------aag ugaaaa-ucu 781 gaagug(guc aa-)------ -----cacaa cagaauugua aucuaaaggg --ucaaccug 841 a---aacu-- ---------- ---------- ---------- ---------- aa-gc-uccu 901 cuca-uaa-- --g-uuc-c( u-(ugggac- )a)gga-c-- ---------- --------GU 961 --|C(AAA)G |AGGG-(UGA CAAC)-CCCG UA|--gucgg agaggaaggc u------ggu 1021 gua------- -agggaga-u uucaaa---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GUU(----UG 1141 GAAU)UGCAG CCCUAA---- guGGGA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 AUAAACUU-- ---------- ---------- ---------- )CUU-CUAAA GCU----AAA 1381 UA-------- ---------- UACAC-GGGA GACCGAUAGC GAAC-AAGUA CU(GCGA)A- 1441 G-GAAAGAUG -AAA-AGAAC UUU(ga-aa- )AGAG-GGCU --AAAAG-AC U-UGAAAC-C 1501 GUUGAGAAG< -g---aagcu guagaagagc a--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- --auaaacug 2161 gacggcgcau aagggggaag uacuaaucac ugcagagucg au(acguaaa ag)--gucga 2221 ugaguaagga aaugguaca- gaacuugcu- -acaccgguc agaa---gac aaaa-|uggg 2281 uucag-auug aaggaguca- -ccugagau- -cgggca--- -----(gcaa -)-------- 2341 ---ugcaga- ucaaaagg-- ---aaaacuu ca-aacu-gg acugagg--- g---gcc--- 2401 ---------- -----(uaag ----)----- ---------g gcg------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------a 2521 uuuu-guc-- ---------- aaa-aug--- gcuucuacug >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAUCAAUUAA GCGAGUGa-u agggu----( ------ggaa 2641 aa)------- ---------- ---a-cccg- ---------- --ucCGCGAA AC(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---guacaag gugccaa-gc c--------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----gcaa-- ----)----- ---------- -------ggu -agcagcauc 3061 a--------- ---------- ---------- ---------- -------ccc gc-cuu--ga 3121 gu-(c-ucc- -)-gcgaa-- gggu-ucgag g]-------- ---------A AGAGCUUAA- 3181 -UUG-UUAGG ACCCGAAAGA U-GGUG-AAC UACG-CUUG- AA|U-AGGGU GAAGCCAGGG 3241 (GAAA----- -----)CUCU GGU-GGAAGC UCG-UA---G CG-AUACUGA (CGUGCAAA) 3301 UCG-U-UCGU CAAAUUUGAG UGUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCU --(CUCA)GG 3421 AUAGC-AAGA -GCAa--|-- -|-gua---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------c 3661 gcaguUUUAU -U|AGG--UA AA-GCGAAUG AUUGAAGGA- -----CUCGG GAGU--(ccu 3721 aag)--AACU U-CGA-|CCU AUUC-UCAAA CUUUA-AAUU |GGUAAGagc -cgcggagu- 3781 uuacuuaaau gaacucucgg gaag------ ---------- ---------- ---------- 3841 ---------- ---------- ----AACgca g|UG-CUCUU gAGUuGGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGAGG(GA- UGAA)CCU-- AACGUUG--- AGAUAAG--G 3961 C|GCCC-AAA U-G--CA-CG CUCAU-ca-- --------ga uaccac---- -AAAAGGUGU 4021 U--GGUUCAU ACGGACA-GC AGGACGGUGG CU(AUGG-AA GUU)AGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAACU AGC|CC-UGA AAA--UGAAU 4141 G--GCG-CU- GAAGCGUGU| U|-------- --GCCGAU-- --ACUCAAC| (- -----)-gcu uugau-gAGU AGGA------ 4441 --GGG|-CG- UG-AU-CG-- --------u- -u-G-CCU-- a------GAA GUAU------ 4501 u-GGC(GUGA -)GCCUAUA- UGG|A-GCA| G--CGAUUA- GUG--AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GACCGAAGU G-GAG|AAGG GUU|CCAUGA GA-ACA(-GC AAU)UG|UUC 4681 AUGGGUUACU |-CGA-UCCU AAGA------ -------<-- cauaggu-ua acuccu-ugc 4741 aauacaagaa gac-a+uuc- guuuucguu- -------g-- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-AAA AGGGA-AU-G AGG(UUAAUA UU-)CCUCA| -AG----cug g-acgug-gu 4981 au[ag----- ---------- ---------- ---------- -----gcg(- -guaa--)cg 5041 c--------- ---------- ---------- ---------- ------a-a] agaaacccgg 5101 aaac-----g uca--gcagg ug-u-cacu- -GG-AAGA(G UUAUCUUU-) UCUUUU-|UA 5161 A-cauacu-- ---------- aug|g---cc auga--aauu ----gg(auu au-)ccaga- 5221 ga-ua-ucgg cugu------ ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- --------a- ----ugua-u gGC-----AG 5341 AGCAGCUCA( -cccua--)A GAGCUGUC-a guugcg---c -gccug--au gacC-CUUGA 5401 AAA-ucuggg g<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- gagacaua-- ---------- ----au--uu --ca-cg--- cc-aguUCGU 5581 A|CC--CAUA ACC(GCAUCA )GG|UCU-CC AAGGU(UAGC A)GCCUCU-| GGUCC-||A- 5641 UA-G--AACA AU-GUAG-AU A-AGGGAAGU CGGCAA-AUU -GGAUCCGUA AC(UUCG)GG 5701 AUAAGGAUU| GGCUCUGAG- ---------- ------------ -------CUC AGAACU|G(- --AAG)CGGA 6601 CAAAGGUAAU C|-CGACUGU UU(AAUAA)A AACAAAGCAU UGUG|A--CG G|CCU(---- 6661 caac)AGG-- ---------- --U-GAUGAC ACAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugac- ----(gcaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA UGAGAUUACC ACUGU-CCCU AUCUACUAUC 6901 UA|GCGAACC C|aca-gCUA AG(GGAA-CG GG)CUUAGAA -U-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCU A---ACU-UU |GUGAAAUGG CACGUGGGGU 7021 AUAGCCUAGG UGGGAGA--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -GCAA)---- 7141 ---------U C-GAUCCUGU AA-AACCACU |ACCCACGU- -AGUCA-UUU UGCUUAu--- 7201 ---------- ---------| --a GACAU-GGUU A-GGGG-GGG AG-UUUGUCU G(GGG)CGGA 7561 A-U|GCCUGU (UAAACCAUA AC-)GCAG-G C|G|U|CCU- AAGUG-UAGC |UCAGU-GAG 7621 -A(ACG---- GAAA)UCUCA CGUAGA|AC( A|A--AAGG) GUAAAAG-CU A-CAUUGAUU 7681 -UUGAUUU(u c--aguag-- )GAAUACAAA CCGC(-GAAA )GCGUGG|CC --UAU|CGA- 7741 UCCUUUA--- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -ACU-UUA(- -CAAG-U--U U---)----- ---------- 7861 -----UAA|G CUAGAG-GUG UC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGA G(UUCAU)AU CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GA-)AUUCA CAACgGUGU| CGGAU(UGUU C)ACCCGCUA 8041 AUAGGGAACG UGAGCUGGGC UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-a<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->-acga ug-uu-gc-G ACAGUAAUUU AAGU(UAGUA 8281 C(GAGA)GGA AC-)ACUUAA A|UCAGAUAA UUGGUAAAUA CGG|-UUGUC U(GAAA)AGA 8341 CAAUGCCGUG A-AGCUACC- AU-CUGU--U GGAUUAUGAC U(GAAGGCCU C-U-A)AGUC 8401 AGAAUCCA-U GCUG--g-aa aGCA--AUGU C --|------- ---------- 8701 --cguaaauc |uuuug(-ua gacga)cu-u aaca-----u g-g|aacggg uauuguaagc 8761 au-gagagua ga----(auu ---------- ---------- ---------- ---------- 8821 ----)----u cuacgauc-u gc-|ugagau u|cag--ccc g--ucu-c-c uu--aga-uu 8881 uau--|---- ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS B.japonicu 9262 bp RNA RNA 30-SEP-1988 DEFINITION Blepharisma japonicum.; 28S ribosomal RNA. ACCESSION M19221 J03648 KEYWORDS 28S ribosomal RNA. SOURCE Blepharisma japonicum. ORGANISM Blepharisma japonicum. REFERENCE 1 (bases 1 to 356) AUTHORS Baroin,A., Perasso,R., Qu,L.-H., Brugerolle,G., Bachellerie,J.-P .P. and Adoutte,A. TITLE Partial phylogeny of the unicellular eukaryotes based on rapid sequencing of a portion of 28S ribosomal RNA JOURNAL Proc. Natl. Acad. Sci. U.S.A. 85, 3474-3478 (1988) STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: M19221 Draft entry and printed copy of sequence for [1] kindly provided by A.Baroin, 26-APR-1988. NCBI gi: 173891 BASE COUNT 104 a 76 c 99 g 75 t 8908 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~na )--gugccug aagucaag-c aag----AUU 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UU ACUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-C)AG-G AU|UGCCUUA GU---AAC(G GCGA)GUG-A A-----CCGG CAUC------ 601 ---------- ---------- ---------- ---------- -AGCCGA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- --------ua cgaaau---c 781 gc----(uuc g--)----gc g--------- ----caguug uacaguugag a-cauagacc 841 uu--acac-- ---------- ---------- ---------- ---------a gc-gg-agca 901 gguuguaa-- --c-uca-g( u-(uggaac- )g)cug-g-- ---------- --------AC 961 --|C(GUA)G |AGGG-(UGA UAGU)-CCCG UG|----cca cuuguu--cc a-----agug 1021 agag------ -guccgug-u uccac----- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUA GCU(----UG 1141 GGAU)UGCUG CCCAAA---- guGGGA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAGACUU-- ---------- ---------- ---------- )CUU-CUAAG GCU----AAA 1381 UA-------- ---------- cuCAC-AAGA GACCGAUAGC GAAC-AAGUA CU(GUGA)A- 1441 G-GAAAun~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~--~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~- -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~-~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~---~ ~~~~~~~~~~ 2641 ~~~------- ---------- ---~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~--------- ---------- ---------- ---------- ---------- ---------~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~- ~~|~-~~~~~ ~~~~~~~~~~ 3241 ~~~~~----- -----~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--~ ~--------- ---------- ---~~~~~-- 3361 --~~~--~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ --~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~--~~ ~~-~~~~~~~ ~~~~~~~~~- -~~~~~~~~~ ~~~~~-~~~~ 3721 ~~~~-~~~~~ ~~~~~-|~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ -~~~~~~~~- 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ---------~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~-~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ 3901 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~~--~ 3961 ~~~~~~~~~~ ~-~~-~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---- ~~~~~~~~~~ 4021 ~--~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~-~~~ ~~~--~~~~~ 4141 ~~~~~~-~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~-- -~~~~~~~~~ ~~~~~~~~-~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|-~~~ ~~~~~~~~-- -~~~~~~~~~ ~~-~~~~~~~ ~----~-~~~ ~~~~----~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ -~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~-~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~---- ---------- --------~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~-~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~- -----~~~~~ ~~~~~~~~~~ ~~-----~-- -~---~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 5101 ~~~~----~~ ~~~-~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-|~~ 5161 ~~~~~~~~~- ------~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ---~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ---------- ---------- ---------- 5281 ---------- ---------- -------~~~ ~~~~~~~~~- ----~~~~~~ ~~~-----~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~--~~ ~~~~-~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~-~~~~~~~ 5581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 5641 ~~~~--~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ -~~~~~~~~~ ~~~~~~~~~~ 5701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 5821 ~~~~~~~~-~ ~~~-~~~~~~ ~~-~~~~~~~ ~~-------- ---------- ---~~~~~~~ 5881 ~~-~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~---~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~-~~~ ~|~~~~~--~ 6661 ~~~~~~~~-- ---------- --~-~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 6721 ~~-~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6841 ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~-~~~-~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~-|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~--~~- -~~~~~~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ -~~~~~-~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7561 ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~--~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~|~~~- 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~-~~~~ ~~~-~----- ---------- 7861 -----~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ 7981 ~~~~~~~|~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 8281 ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 8701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~--~~~-~~~ ~~~-~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS S.coeruleu 9262 bp RNA RNA 30-SEP-1988 DEFINITION Stentor coeruleus.; 28S ribosomal RNA. ACCESSION M19220 J03648 KEYWORDS 28S ribosomal RNA. SOURCE Stentor coeruleus. ORGANISM Stentor coeruleus. REFERENCE 1 (bases 1 to 353) AUTHORS Baroin,A., Perasso,R., Qu,L.-H., Brugerolle,G., Bachellerie,J.-P .P. and Adoutte,A. TITLE Partial phylogeny of the unicellular eukaryotes based on rapid sequencing of a portion of 28S ribosomal RNA JOURNAL Proc. Natl. Acad. Sci. U.S.A. 85, 3474-3478 (1988) STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: M19220 Draft entry and printed copy of sequence for [1] kindly provided by A.Baroin, 26-APR-1988. NCBI gi: 176023 BASE COUNT 109 a 67 c 97 g 79 t 8910 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~na )--gcgccug aacucaag-c aag----AUU 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UU ACUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-A)AG-G AU|UACCUUA GU---AAC(U GCGA)GUG-A A-----CUGG UAAA------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -------gac ugguaa---u 781 cgc---(uuc g--)---gcg a--------- ----auugua caguuuagac a--ugugucu 841 u---aagu-- ---------- ---------- ---------- ---------- ga-au-cgca 901 cgc-guaa-- --c-uug-g( c-(uggaau- )g)cca-g-- ---------- --------AC 961 --|C(GGA)G |AAGG-(UGA UAGU)-CCUG UG|----ccg ccugug--ug a-----agcg 1021 aaa------- -gacugug-- uucaa----- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGACA GUU(----UG 1141 GGAU)UGCUG UCCUAA---- guGGGA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAGACUU-- ---------- ---------- ---------- )CUU-CUAAG GCU----AAA 1381 UA-------- ---------- cugAC-GAGA GACCGAUAGC GAAC-AAGUA CU(GUGA)A- 1441 G-GAAAGA~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~--~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~- -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~-~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~-~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~---~ ~~~~~~~~~~ 2641 ~~~------- ---------- ---~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~--------- ---------- ---------- ---------- ---------- ---------~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~- ~~|~-~~~~~ ~~~~~~~~~~ 3241 ~~~~~----- -----~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--~ ~--------- ---------- ---~~~~~-- 3361 --~~~--~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ --~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~--~~ ~~-~~~~~~~ ~~~~~~~~~- -~~~~~~~~~ ~~~~~-~~~~ 3721 ~~~~-~~~~~ ~~~~~-|~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ -~~~~~~~~- 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ---------~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~-~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ 3901 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~~--~ 3961 ~~~~~~~~~~ ~-~~-~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---- ~~~~~~~~~~ 4021 ~--~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~-~~~ ~~~--~~~~~ 4141 ~~~~~~-~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~-- -~~~~~~~~~ ~~~~~~~~-~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|-~~~ ~~~~~~~~-- -~~~~~~~~~ ~~-~~~~~~~ ~----~-~~~ ~~~~----~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ -~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~-~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~---- ---------- --------~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~-~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~- -----~~~~~ ~~~~~~~~~~ ~~-----~-- -~---~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 5101 ~~~~----~~ ~~~-~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-|~~ 5161 ~~~~~~~~~- ------~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ---~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ---------- ---------- ---------- 5281 ---------- ---------- -------~~~ ~~~~~~~~~- ----~~~~~~ ~~~-----~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~--~~ ~~~~-~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~-~~~~~~~ 5581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 5641 ~~~~--~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ -~~~~~~~~~ ~~~~~~~~~~ 5701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 5821 ~~~~~~~~-~ ~~~-~~~~~~ ~~-~~~~~~~ ~~-------- ---------- ---~~~~~~~ 5881 ~~-~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~---~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~-~~~ ~|~~~~~--~ 6661 ~~~~~~~~-- ---------- --~-~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 6721 ~~-~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6841 ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~-~~~-~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~-|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~--~~- -~~~~~~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ -~~~~~-~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7561 ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~--~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~|~~~- 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~-~~~~ ~~~-~----- ---------- 7861 -----~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ 7981 ~~~~~~~|~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 8281 ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 8701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~--~~~-~~~ ~~~-~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (4)-Dinoph 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS P.micans 9262 bp RNA RNA 11-JAN-191 DEFINITION Prorocentrum micans. ACCESSION No information KEYWORDS No information. SOURCE Prorocentrum micans. ORGANISM Prorocentrum micans. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: M14649 M19230 X15973 LOCUS PMIRR17S 2451 bp ds-DNA INV 15-JUN-1988 DEFINITION P.micans 17S, 5.8S, and 24S (5' end) ribosomal RNA genes. ACCESSION M14649 ORGANISM Prorocentrum micans Eukaryota; Plantae; Thallobionta; Chromophycota; Dinophyceae; Dinophycidae; Prorocentrales; Prorocentraceae. M14649 and M19230 are the same BASE COUNT 945 a 736 c 962 g 919 t 5700 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~acaACUU UCAGCGACGG AUG|UCUCGG 61 |CUCGAAC|A A|-CGAUGAA GGG|CGCA(- -GCGA-AA)U |GU-GAUAAG CA-augu|[- 121 gaauugcaga auuccgugaa c--------- ---------- ---------- -------]-- 181 ---------- ---------- ---caaua|G GGACUU-GAA Cgu-(auacu )-g-c|gcuu 241 ucg------g g(-------- ---------- ---------- -----auau- ---)cc---- 301 -cug-aaggc ---aug-ccu -g-cu-uca- gu----(g-- ---------/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ------caag )---acauga aguuaggu-c a-g----CAA 481 AC|CCGCUGA -A--UU|UA( AGCA)UA-UA AGUAAG-C-G G-AGGAUA-- --AGAAACU( 541 AAA-U)AG-G AU|UCCCUCA GU---AAU(G GCGA)AUG-A A-----CAGG GAUC------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------gcau g-gaaauugg 781 gcc---(cuc ---)----gg cc-uugaauu guagucucg- -agaugcauc gcc------- 841 -----aau-- ---------- ---------- ---------- ---------- ggagg-cgca 901 gaug-uaa-- --g-ccu-c( u-(uggaaa- )a)gag-c-- ---------- --------AU 961 --|C(AAC)G |AGGG-(UGA GAGU)-CCCG UU|--uguca ucugcagucc c-----ccau 1021 gcac------ --ggcgug-c -uucuaa--- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGCGUU CCU(----CG 1141 GAAU)UGGAG CGUCAA---- uuGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAaAUUU-- ---------- ---------- ---------- )CAU-CUCAA GCU----AAA 1381 UA-------- ---------- UUGGU-UCGA GACCGAUAGC AAAC-AAGUA CC(AUGA)G- 1441 G-GAAAGGUG -AAA-AGGAC UUU(ga-aa- )AGAG-AGUU --AAAAGUGC C-UGAAAU-U 1501 GCUGA-AAG< gg---aagcg aauggaac-c aguguugc-u uggcgagagu ugucguacgc 1561 acuucgcgug uggugguucu ugccuu-gug ugucaagcag ccuucgcgau cgaggaaaac 1621 uccagggaca ugguagccua ccccug-ggu gggugaaugu gcuugguaga acuca-uuug 1681 cggacuguuu ccuucguguc ugguugcagu gcug------ ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ------cuug ---aucuugu 2401 g-cgc-uggg augg-agcuc --gcuccuac aaccucccuu cuaaggucuc agcgcuuccc 2461 ugacacauag ---------- ---------- ---------- ---------- ---------- 2521 cgau-gac-- ---------- uaa-aug--- guucuauucg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUAUGU GCGAGUCc-a cggau----( -------ugg 2641 ua)------- ---------- ---a-accu- ---------- --ugGGCGCA GU(GAAA)GC 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------cug cuggga---- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----uuuuu- ----)----- ---------- ---------- --gcaccagc 3061 a--------- ---------- ---------- ---------- -------acc ga-cc---aa 3121 uc-(a-auug a)-gaga--- -ggu-uugag u]-------- ---------A UGAGCAUAU- 3181 -CUG-UUAGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AG|A-AGGGC AAACUCAGGG 3241 (GAAA----- -----)CUCU GAU-GGAGGC UCG-UA---G CG-AUACUGA (CGUGCAAA) 3301 UCG-U-UCGU CAUACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGA -GUU--g|-- ---aac---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 --aguUUUAU -C|AGG--UA AA-GCGAAUG AUUAGAGGA- -----AUCGG GGGC--(gcg 3721 u-u)--GUCC U-CGA-|CCU AUUC-UCAAA CUUUA-AAUG |GGUAAGauc -ca-ugguu- 3781 -acuuggu-g aacuucuggc aua------- ---------- ---------- ---------- 3841 ---------- ---------- ----AAUg-a c|AA-CUCUA -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGAGG(GA- UGAA)CCU-- AACGUUG--- GGUUAAG--G 3961 U|GCUU-AAC U-G--CU-CG CUCAU-ca-- --------ga uaccau---- -AAAGGGUGU 4021 U--GGUUCAU UUUAACA-GC AGGACGGUGG UC(AUGG-AA GUU)GAAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGGACU AGC|CC-CGA AAA--UGGAU 4141 G--GC--CU- uaAGCGGGU| G|-------- --ACCGAU-- --ACCCAAC| (- -----)ugca ucaau-gAGU AGGA------ 4441 --GGG|-CA- UG-GG--g-- ---------c -u-u-guga- u------GAA GCUU-----u 4501 u-GGC(GUAA -)GCCCUGG- UGA|A-acg| g--CUCCUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(Gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GACCGAAGU G-GAG|AAGG GUU|CCACGU GA-ACA(-GC AGU)UG|GAC 4681 GUGGGUUAGU |-CGA-UCCU AAGA------ -------<-g acagga(--u gu--)uccgc 4741 a-cacgca-- ---------- gc-(-uuu-- -------)-g -ccucgacuc ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA AGGCA-AU-G GGG(UUAAUA UU-)CCCCA| -AC----cag gacgugg-au 4981 ac[augu--- ---------- ---------- ---------- -----aug(- -gcaa--)cg 5041 u--------- ---------- ---------- ---------- -----aa-g] aga-auucgg 5101 ugac-----g cag--ggggg ag-c-cuug- -ggcaagc(G UUGUCUUU-) ucuuuu-|UA 5161 Agccgucu-- ---------- uuu|a---cc cuga--aauc ----ag(auu gc-)cugga- 5221 ga-aa-ggg- uuaau----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----uggc-g gGU-----AA 5341 AGCACCUUG( -ucuuc--)C GAGGUGUC-c ggugcg---c -ucuca--ac uguC-CUUGA 5401 AAA-accgaa -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- gaaagacu-- ---------- ----ua-uuc --ac-acc-- cc-uggUCGU 5581 A|CC--CAUA ACC(GCAUCA )GG|UCU-CC AAGGU(UAGC A)GCCUCU-| GGUCG-||A- 5641 UA-G--UACA AA-GUAG-GU A-AGGGAAGU CGGCAA-AAU -AGAUCCGUA AC(UUCG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- ------------ -------CUC AGAACU|G(- --GAG)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--UG G|CCU(---c 6661 aaac)GGC-- ---------- --U-GUUGAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugau- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU AUCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -U-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCG A---ACU-UU |GUGAAAUGA CUUAGGAGGU 7021 GUAGACUAAG UGGGAGC--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -UUUG)---- 7141 ---------G C-GAUCUUGA AA-UACCACU |ACUCUUAA- -UGUCA-UUU UACUUAcu-- 7201 ---------- ---------| --a GACAU-AGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAAUGAUA AC-)GCAG-G U|G|U|CCU- AAGGU-GAGC |UCAAU-GAG 7621 -A(ACA---- GAAA)UCUCA UGUGGA|CC( A|A--AAGG) GGAAAAG-CU U-GCUUGAUU 7681 -UUGAUUU(u c--aguac-- )GAAUACAAA CUGU(-GAAA )ACAUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -guC-UGA(- -GAAA-U--g U---)----- ---------- 7861 -----UCA|G CUAGAG-GUG UC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-AGACG(CA -GA-)AGUCC CAAA-GUGU| CGGAU(UGUU C)ACCCGCCA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-a<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->cuuGA UA-CU-GC-G ACAGUAAUCG AAGU(CAGUA 8281 C(GAGA)GGA CA-)ACUUCG U|UCAGAUAC UUGGUAAAUG CGG|-CUAGC U(GAAA)AGC 8341 UAAUACCGCG A-AGCUACC- AU-CUGU--U GGAUUACGAC U(GAACGCCU C-U-A)AGUC 8401 GGAAUCCA-U GCUG--gcua aGCA--GUGU u<-guccacc auuuccau-u guuacaugac 8461 aagcauuagc -uucggccug uugcauacga acacucuuac cgagaaaggu uuuguggcua 8521 au-------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- --cuua-auu u-ccag-cuu uggaagug-- --|------- ---------- 8701 ---auaaauc |uuuug(-ca gacga)cu-u aacu-----g a-a|uccagg uauuguaagu 8761 gcugagagua gc----(cuu ugua------ ---------- ---------- ---------- 8821 ----)----g cuacgauc-c ac-|ugaggu u|cau--ccu g--ugu-u-u uuc-uga-uu 8881 uguuc|---- ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (3)-Chlora 9262 bp RNA RNA ~?~???? DEFINITION Chlorarachniophyceae. ACCESSION No information KEYWORDS No information. SOURCE Chlorarachniophyceae. ORGANISM Chlorarachniophyceae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS Ch.CCMP621 9262 bp RNA RNA 19-JAN-1999 DEFINITION Chlorarachnion CCMP621. subsp. was Pedinomonas minutissima.. ACCESSION No information KEYWORDS No information. SOURCE Chlorarachnion CCMP621. subsp. was Pedinomonas minutissima. ORGANISM Chlorarachnion CCMP621. REFERENCE 1 (bases 1 to 353) AUTHORS Gilson,P.R. and McFadden,G.I. TITLE contains genes that overlap, genes that are contranscribed, and the smallest known spliceosomal introns The minaturized nuclear genome of a eukaryotic endosymbiont JOURNAL Proc. Natl. Acad. Sci. U.S.A. (1996) In press STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U58510 LOCUS PMU58510 15074 bp DNA PLN 19-JAN-1999 DEFINITION Chlorarachnion CCMP621 small subunit ribosomal RNA, 5.8S ribosomal RNA, large subunit ribosomal RNA, U6 small nuclear RNA, small subunit ribosomal protein S13 (RPS13), pre-mRNA splicing factor PRP 6 homolog, small subunit ribosomal protein 4 (RPS4), small nucleolar ribonucleoprotein E homolog (snRNPE), ATP-dependent clp protease proteolytic subunit homolog (CLPP), putative RNA polymerase II subunit (RNA POLII), and RNA helicase homolog (RNAHEL) genes, complete cds. ACCESSION U58510 NID g1401204 KEYWORDS . SOURCE Chlorarachnion CCMP621. ORGANISM Chlorarachnion CCMP621 Eukaryota; Chlorarachniophyceae; Chlorarachnion. REFERENCE 1 (bases 1 to 15074) AUTHORS Gilson,P.R. and McFadden,G.I. TITLE The minaturized nuclear genome of a eukaryotic endosymbiont contains genes that overlap, genes that are contranscribed, and the smallest known spliceosomal introns JOURNAL Proc. Natl. Acad. Sci. U.S.A. (1996) In press REFERENCE 2 (bases 1 to 15074) AUTHORS Gilson,P.R. TITLE Direct Submission JOURNAL Submitted (16-MAY-1996) Paul R. Gilson, Botany, University of Melbourne, Parkville, Melbourne, VIC, 3052, Australia FEATURES Location/Qualifiers source 1..15074 /organism="Chlorarachnion CCMP621" /strain="CCMP 621 (Culture Collection of Marine Phytoplankton)" /note="nucleomorph III; subtelomeric; old name: Pedinomonas minutissima" /db_xref="taxon:77303" /cell_type="motile flagellum-bearing cells" rRNA 2020..2199 /product="5.8S ribosomal RNA" rRNA 2358..6023 /product="large subunit ribosomal RNA" BASE COUNT 4599 a 2600 c 3098 g 4777 t BASE COUNT 961 a 941 c 1200 g 773 t 5387 others ORIGIN 1 |--------- ---------- gaacgaagaa cgaaGAAACC CUAGUGAUGG AUG|UCUAGG 61 |CUCCCGU|A U|-CGAUGAA GAA|CGUA(- -GCAG-AA)A |GC-GACAUG CG-auga|[- 121 uacgcgcaua gaccaggauu ccgcggacuc gugaau---- ---------- -------]-- 181 ---------- ---------- ---cauug|A AUCUUC-GAA CGC-(aucug )-g-c|gcuc 241 agcag----u gg-------- ---------- ---------- -----agccg uag)ca--g- 301 --gc-ugagc ---augcccu -g-ga-gua- gugac-(aa- ---------/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --------ag )-guc-cuac -ccacgag-c agg----AGA 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UC AUUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-C)AG-G AU|UCCCUUA GU---AAC(G GCGA)GCG-A A-----CCGG GAGU------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------acca cgaagcgcau 781 ugaaccugag ccaagggagg ccagguucua gugcauugua ggguaaaagg aaaacggagu 841 ggugaauccg auggguguau uccuagcuaa agggaaaccc uau------a cccgc-acgu 901 gucu-gaa-- --g-aggaa( c-(uggaau- )g)ucc-c-- ---------- --------AC 961 --|C(AGA)G |AGAG-(UGA GAGU)-CUCG UA|agucacg cgcggguugg guccaauacc 1021 cuuuaccagg gcccggauga uccaccaauu ccuga----- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GCU(----UG 1141 AGAG)UGCAG CCUGAA---- gcGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAGACCC-- ---------- ---------- ---------- )CAU-CCAAG GCU----AAA 1381 UA-------- ---------- caacC-GGGA GACCGAUAGC GAAC-AAGUA CC(GCGA)G- 1441 G-GAAAGAUG -AAAGAGCAC CCC(GG-AA- )GGGG-AGUG AAAUGAGAAC C-UGAAAU-C 1501 AUUAG-GGU< gg---aagca ucuggggg-u g--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- -------cga uguggggaug guu--auaag 2221 ccaguuc(-c uuu)gauc-- gau---ccc- -agccgc-gc aucgca-cga gaca--gguc 2281 cgaca-cgga ucugaaacga aucucgu--- ---------- -----gacac gaugaggggc 2341 ug-------- ---------- ---------- ---------- ---------u guagauagag 2401 a-cagaguca ggca--uguc cu---gcaug accugaucac ga-------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------g 2521 gauc-gau-- ---------- cca-aca--u ccucc-gaug >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UGGCAgGUCU GCGAGUCa-g ugugc----( ------g-gc 2641 ga)------- ---------- ---g-c-ca- ---------- cacgGGCGUA AG(AAAC)CU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ----ccaggg guugga-cac auggaccaug 2941 ccgaacugag gcacggucca uguguccaac cuugaccggu cgcccuauac gcggagccuu 3001 auuaccgcug augcaucccg guauagccau accgggcucg cugcggaagu --gcgcaguc 3061 a--------- ---------- ---------- ---------- -------ugc gu-uu--gag 3121 ag-(c-uucg -)-cgucug- -agcgauccg g]-------- ---------U GGAGCAGGC- 3181 -CUC-CCAGG ACCCGAAAGG U-GGUG-AUC UAGG-CCUG- GG|C-AGGGC GAAGCCUGGC 3241 (UAAC----- -----)GCUU GGU-GGAGGC CCG-AA---G GA-GUGCUGA (CGUGCAAA) 3301 UCG-C-UUCU CUGACCUGGG CCUAGUG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CC AAU-CGAACC ACCUAGUAGC UGGUUCCCUC CGAAGUUUCU --(CACA)GG 3421 AUAGC-UGAG -ACUc--|-- -|-gau---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 -cgggUGUGU -C|AAG--UA AA-GCGACUG AUUACGAGU- -----GACGG GCGU--(gga 3721 uag)--AUGU U-CGA-|CUC GUUC-UCAAA CUCUG-AAUU |GGCACGgcg -cc-uccuu( 3781 gcuuggaug) aagg--gg-u aagcgcg--- ---------- ---------- ---------- 3841 ---------- ---------- ----acc-ga g|AG-UCUCA -AGU-GGGCC -AGU-UUUG( 3901 G-UAAG)CAG AGC-UGGC-G AUGCGG(GA- UGAA)CCG-- AGUGUCG--- AGUUAAA--G 3961 U|GUCC-AAC U-A--CA-CG CUCACcua-- --------ga ucccag---- -gaA-GGUGU 4021 C--AGCUGAU ACUGACA-GC GGCGCGGUGG UC(AUAG-AA GUC)GAAAUC CG|C(UAA)G 4081 |GAGUGU(GU UACA)AC|-- -UCACCUGCC -GAACCAGUA GGC|CC-CGA AAA--UGGAU 4141 G--ACG-CU- CAAGCGUGU| G|-------- --ACUUAG-- --ACUCGAC| (- -----)-gcu cucac-gGGU AGGA------ 4441 --GGG|-CG- UG-GG-UG-- --------U- -U-G-CUU-- c------GAA GCC------a 4501 u-GGC(GUAA -)GCCUCGG- UGG|A-GCG| G--CGCCUA- GUGC-AGA-U CUUGGU|GG- 4561 GAGUAGCGAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GACUGAAGU G-GAG|AAGG GUU|CCGCGG GA-ACA(-GC GUU)UG|GCC 4681 GCGGGUGAGU |-CGA-UCCU AAGG------ -------<-a uuaggg(-ua gc)gcc--gu 4741 a--------- -----gc--- ---------- ---------- (auccuc--) ---------- 4801 --------a- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA AGGGA-AA-A GGG(UUAAUA UU-)CCCUU| -AC----cuu g-gaggg-au 4981 cc[gaag--- ---------- ---------- ---------- -----gcg(- -gcaa--)cg 5041 c--------- ---------- ---------- ---------- -----aa-g] cga-gcucgc 5101 agac-----g cuc--gccuu ga-u-cccg- -GG-AGGA(G GUCUCUAC-) UCCUCU-|UG 5161 Augcuugu-- ---------- ggg|----gg cuug--gagc ----ag(ggu caa)cugaga 5221 ag-gg-gcu- -cc------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----acaa-g cGG-----CA 5341 CAgccuguu( -cgaaa--)c acggggUC-c ggugca---u -caggg--cg ggcC-CAUGA 5401 AAA-ugcgag g<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- -gagcgaca- ---------- ---a-ggaug cacc-ucc-- ca-aggUCGU 5581 A|CC--CAUA ACC(GCAUCA )GG|ucu-cc aAGGU(GAGC A)GCCUCU-| AGUCG-||A- 5641 UA-G--AGAA AG-GUAG-GU A-AGGGAAUU CGGCAA-AUU -AGAUCUGUA AC(UUCG)GG 5701 AUAAGGAUU| GGCUUCGAU- ---------- -(-----)---- -------AUU GAAACU|G(- --GCG)CGGA 6601 CCAAGGGAAU C|-CGACUGU CU(ACUAA)A AACACAGCAU UGCG|A--UG G|UCC(---c 6661 ccgc)GGA-- ---------- --U-GUUGAC GCAAUGUG-- AAUCCUGCCC AGU|GCUCAG 6721 AC-UGUCAA- ---gacgga- ----(gaga) -----uucga ----CGAAGC A|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CUAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GUGCAUG AAUGGAGCAA CGAGAUUCCU ACUGU-CCCU ACCUACCCUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGGA -G-AAA-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AUCCU G---GGG-UU |GUUGGGCGA CUUAGGAGGU 7021 GUAGCAUAGG UGGGAGCU-- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -UCCG)---- 7141 --------AG C-GUCACUGA AA-UACCACC |ACUCCCAA- -GAUCG-UCC UGCugau--- 7201 ---------- ---------| --a GACAC-CCCC A-GGUG-GGG AG-UUCGGCU G(GGG)CGGU 7561 A-C|ACCCGU (CAAAAGACA AC-)GCGG-G U|G|U|CCU- AUGGU-CAGC |UCAAC-GAG 7621 -G(ACA---- GAAC)UCUCG UGUGGU|GU( A|GuuAAGG) GUAGAAG-CU G-ACUUGAUU 7681 -CGGGCUC(u c--aguag-- )GAGCUUGAG CUGC(-GAAA )GCAUGG|CC --UAC|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --cC-UUC(- -UGGG-U--G U---)----- ---------- 7861 -----GAA|G CUAGAG-GUG UC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GUUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUUCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GG-)AUUCA CAAA-GCGU| UGGAU(UGUU C)ACCCACAG 8041 ACAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GUUGUga<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->-ggga cc-gg-uguG AUGGUAAUGG AGCU(UAGUA 8281 C(GAGA)GGA AC-)GGUUCG A|UCGGAUAC UUGGUAA-CG CGC|-UCGAU G(GAGC)CGU 8341 CGAUGGCGCG A-GGCUAC-- AU-CCGU--G GGGUAAUGGC U(GACAGCCU C-UCA)AGCC 8401 AGAACCCU-U GCCA--g-ag acac---ggc c --|------( ---)------ 8701 ---aaggacc |cacug(-ua gacga)cc-g ugcuaaagag g-a|acgggg ugcuggaagc 8761 ga-gagagug c-----(aaa c--------- ---------- ---------- ---------- 8821 ----)----- gcgugauc-c gu-|gcaggc c|uac--ccc c--ggu-u-c acu-agg-uc 8881 cuccg|gaau a-----|agg augcaaguau ac~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (3)-FM-Grp 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS (4)-Fungi 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS (5)-Ascomy 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS (6)-Archia 9262 bp RNA RNA ~?~???? DEFINITION Archiascomycetes. ACCESSION No information KEYWORDS No information. SOURCE Archiascomycetes. ORGANISM Archiascomycetes. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS P.carinii 9262 bp RNA RNA 11-JAN-191 DEFINITION Pneumocystis carinii. ACCESSION No information KEYWORDS No information. SOURCE Pneumocystis carinii. ORGANISM Pneumocystis carinii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: M86760 LOCUS PMC26S58R 4256 bp ds-DNA INV 17-JUL-1992 DEFINITION Pneumocystis carinii 16S ribosomal RNA (16S rRNA) gene, 3' exon; 5.8S ribosomal RNA (5.8S rRNA) gene, complete; and 26S ribosomal RNA (26S rRNA) gene, 5' end. ACCESSION M86760 KEYWORDS 16S ribosomal RNA; 26S ribosomal RNA; 5.8S ribosomal RNA. SOURCE Pneumocystis carinii DNA. ORGANISM Pneumocystis carinii Eukaryota; Animalia; Protozoa; Sarcomastigophora; Sarcodina. REFERENCE 1 (sites) AUTHORS Edman,J.C., Kovacs,J.A., Masur,H., Santi,D.V., Elwood,H.J. and Sogin,M.L. TITLE Ribosomal RNA sequence shows Pneumocystis carinii to be a member of the Fungi JOURNAL Nature 334, 519-522 (1988) STANDARD full staff_review REFERENCE 2 (sites) AUTHORS Sogin,M.L. and Edman,J.C. TITLE A self-splicing intron in the small subunit rRNA gene of Pneumocystis carinii JOURNAL Nucleic Acids Res. 17, 5349-5359 (1989) STANDARD full staff_review REFERENCE 3 (bases 1 to 4256) AUTHORS Liu,Y., Rocourt,M., Pan,S., Liu,C. and Leibowitz,M.J. TITLE Sequence and variability of the 5.8S and 26S rRNA genes of Pneumocystis carinii JOURNAL Nucleic Acids Res. (1992) In press STANDARD full staff_entry FEATURES Location/Qualifiers rRNA join(557..2797,3153..4238) /product="26S ribosomal RNA" /gene="26S rRNA" intron 1..22 /number=1 /gene="16S rRNA" /evidence=EXPERIMENTAL exon 23..53 /number=2 /gene="16S rRNA" rRNA 217..374 /product="5.8S ribosomal RNA" /gene="5.8S rRNA" exon 557..2797 /number=1 /gene="26S rRNA" intron 2798..3152 /number=1 /gene="26S rRNA" /evidence=EXPERIMENTAL exon 3153..4238 /number=2 /gene="26S rRNA" /partial BASE COUNT 1190 a 766 c 1124 g 1176 t ORIGIN BASE COUNT 973 a 655 c 947 g 928 t 5759 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AAACUU UCAGCAAUGG AUC|UCUUGG 61 |UUCCCGC|G U|-CGAUGAA GAA|CGUG(- -GCAA-AA)U |GC-GAUAAG UAgugu-|[- 121 gaauugcaga auucagugac u--------- ---------- ---------- -------]-- 181 ---(------ -)-------- ---caucg|A AUUUUU-GAA Cgc-(auauu )-g-c|gcuc 241 cuc------a g(-------- ---------- ---------- -----uauu- ---)cu---- 301 --gu-ggagc ---augccug -u-uu-gagc guca--(--- ---uuu---/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------cuu )--ugaccuc aaaucagg-u aGG----AUU 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UC AAUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-A)AG-G AU|UCCCUCA GU---AAC(G GCGA)GUG-A A-----GUGG GAAA------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------aaau uaaaaucugg 781 cgag-(-gau c---)--cuc gu-ccgaguu guaauuuag- agaag-ugc- uuuu------ 841 ----ggcu-- ---------- ---------- ---------- ---------- ug-au-gcuc 901 uauu-uaaa- --g-ucc-u( u-(uggaac- )a)agg-c-- ---------- --------AU 961 --|C(AUA)G |AGGG-(UGA UAAU)-CCCG UA|--cgagu aggguua--u u-----aagc 1021 u--augu--- aaaagcac-a uucgaa---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGAGUU GUU(----UG 1141 GGAU)UGCAG CUCAAA---- AUGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUU-- ---------- ---------- ---------- )CAU-CUAAA GCU----AAA 1381 UA-------- ---------- UUAGC-GGGA GACCGAUAGC GAAC-AAGUA GA(GUGA)U- 1441 C-GAAAGAUG -AAA-AGAAC UUU(ga-aa- )AGAG-AGUU A-AAUAGUAC G-UGAAAU-U 1501 GCUGA-AAG< gg---aagcg cuugcgau-c a--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- -------gac augccu-uau cag---gaug 2221 uuguugu(cu ug-)acaau- aacuauuac- -uugg--uu- uggcag-gcc aaca-|ucgg 2281 uuuca-gcug cuagguaagu -gucaagaga ggguagccuc u----(uucg -)----uggg 2341 gu---gguua gcucuuggc- --uucuguag ua-gcag-gg accggaaggu c--uagc--- 2401 ---------- -----(guca ----)----- ---------g cuu------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- -------ggu 2521 uguu-ggc-- ---------- uua-a---ug gucuuaagcg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAAUAUCUAU GCGAGUGu-u ugagu----( -------gga 2641 aa)------- ---------- ---a-cuca- ---------- --uaCGCGAA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- --agcaaaag guagga--ac cc-------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----uuuaa- ----)----- ---------- ------gggu --gcacuauc 3061 g--------- ---------- ---------- ---------- -------acc gg-uuc---- 3121 aaa(u-uua- -)uuu----- gga--uugag u]-------- ---------A AGAGCAUAG- 3181 -CUA-UUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AA|U-AGGGU GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-GUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU CAAAUUUGGG CAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCUGC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-AGAA -ACUc--|aa u|-------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------au 3661 c-aguUUUAU -G|AGG--UA AA-GCGAAUG AUUAGAGGC- -----AUUGG GGUU--(GAA 3721 A-C)--AACC U-UAA-|CCU AUUC-UCAAA CUUUA-AAUA |UGUAAGaag -uccuuguu- 3781 -gcuuaauug aacaugga-c auuag----- ---------- ---------- ---------- 3841 ---------- ---------- ----AAUg-a g|AG-UUUCU -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- AACGCGA--- GGUUAAG--G 3961 U|GCCG-GAA --G--CA-CG CUCAU-ca-- --------ga uaccac---- -AAAAGGUGU 4021 U--AGUUCAU CUAGACA-GU AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUACC -GAAUGAACU GGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- CAAGCGUGC| U|-------- --ACCUAU-- --ACCUCGC| (- -----)-ucc uagac-gAGU AGGC------ 4441 --AGG|-CG- UG-GG-GG-- --------u- -c-g-ugg-- c------GAA GCCU-----A 4501 G-GGC(GUGA -)GCCCGGG- UUG|A-ACG| G--CCUCUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagga--- ---------- ---------- ---------- 4621 --)CUUUGAA |GACUGAAGU G-GGG|AAAG GUU|CCAUGC GA-ACA(-GU UAU)UG|GGC 4681 AUGGGUUAGU |-CGA-UCCU AAGA------ -------<-g auaggg(-aa ac)ucc--gu 4741 u---uuaaag u-gcgcg--- ---------- ---------- (auuuuu--) ---------- 4801 --------cg cgccucua-- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA AGGGA-AU-C CGG(UUAAUA UU-)CCGGA| -AC----cag gauaugg-au 4981 uc[uuc---- ---------- ---------- ---------- -----acg(- -gcaa--)cg 5041 u--------- ---------- ---------- ---------- -----aa-a] uga-agucgg 5101 agac-----g uca--gcggg gg-g-ccug- -GG-AAGA(G UUAUCUUU-) UCUUCU-|UA 5161 A-cagccu-- ---------- auc|a----C CCUG-GAAUC ----GG(UUU AU-)CCGGAG 5221 AU-AG-GG-- uucaa----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----uggc-u gGU-----AG 5341 AGUUCAGCA( --cuuc--)U GUUGAAUC-c agugcg---c -uuucg--au gacC-CUUGA 5401 AAA-uccgac -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaaggaa-- ---------- ----uaguuu --uc-aug-- cc-ugGUCGU 5581 A|CU--CAUA ACC(GCAACA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| AGUUG-||A- 5641 UA-G--AAUA AU-GUAG-AU A-AGGGAAGU CGGCAA-AAU -AGAUCCGUA AC(UUCG)GG 5701 AUAAGGAUU| GGCUCUAAG- ---------- -(-----)---- -------CUU AGAACU|G(- --GUA)CGGA 6601 CAAGGGGAAU C|-UGACUGU CU(AAUUA)A AACAUAGCAU UGCG|A--UG G|CCA(---g 6661 aaag)UGG-- ---------- --U-GUUGAC GCGAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UGAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU AUCUACGAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-UG GG)CUUGGCA -A-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUUU G---ACA-UU |GUGAAAAGA CAUAGAGGAU 7021 GUAGAAUAGG UGGGAGC--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -UUCG)---- 7141 ---------G C-GCCUGUGA AA-UACCACC |GCCUUUAU- -UGUUU-UUU UACUUAA--- 7201 ------(--- --)------| --u GACAU-UGUC A-GAUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (CAAAAGAUA AC-)GCAG-G U|G|U|CCU- AAGGG-GAGC |UCAUU-GAG 7621 -A(ACA---- GAAA)UCUCA AGUAGA|AU( A|A--AAGG) GUAAAAG-UU C-CCUUGAUU 7681 -UUGAUUU(u c--aguac-- )GAAUACAAA CCAU(-GAAA )GUGUGG|CC --UAU|CGA- 7741 UCCUCUAA-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -auC-CUC(- -GAAA-U--U U---)----- ---------- 7861 -----GAG|G CUAGGG-GUG CC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UA C-CGAAG(CA -GA-)AUUCG GUAA-GCGU| UGGAU(UGUU C)ACCCACUA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUGCU GAUGA-A<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->---GU UA-UC-GC-A AUGGUAAUUC AGCU(UAGUA 8281 C(GAGA)GGA AC-)CGUUGA U|UCAGAUAU UUGGUUUUUG CGG|-UUGUC U(GACC)AGG 8341 CAGUGCCGCG A-AGCUAUC- AU-CUGU--U GGAUUAUGGC U(GAAAGCCU C-U-A)AGUC 8401 AGAAUCCA-U GCCA--g-aa aGCG--AUGA U<-----auu uccucacg-- -uuuuuu--- 8461 gauacaaaua --ggca---u cu----ugcc --------aa uaucaguauu uggacgggug 8521 gaggcggac- ggaagu-gu- ucgu-cucug u--ccauu-a auauuaauua ---auauu-- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------c gugaggg--> --|------( ---)------ 8701 ----cgaauc |cuuug(-ua gacga)cu-u aguug---ag g-a|acgggg uauuguaagc 8761 ag-uagagua gc----(cuu -guu------ ---------- ---------- ---------- 8821 ----)----g uuacgauc-u gc-|ugagau u|aag--ccu u--ugu-u-c cca-aga-uu 8881 ugu--|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS S.japonicu 9262 bp RNA RNA 11-JAN-191 DEFINITION Schizosaccharomyces japonicus. ACCESSION No information KEYWORDS No information. SOURCE Schizosaccharomyces japonicus. ORGANISM Schizosaccharomyces japonicus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: Z32848 ID SJRIBRNA standard; DNA; FUN; 6492 BP. XX AC Z32848; XX DT 05-MAY-1994 (Rel. 39, Created) DT 05-MAY-1994 (Rel. 39, Last updated, Version 1) XX DE S.japonicus genes for 17S, 5.8S, and 25S ribosomal RNA XX KW 17S ribosomal RNA; 25S ribosomal RNA; 5.8S ribosomal RNA; KW ribosomal RNA. XX OS Schizosaccharomyces japonicus (yeast) OC Eukaryota; Plantae; Thallobionta; Eumycota; Hemiascomycetes; OC Endomycetales; Saccharomycetaceae. XX RN [1] RP 1-6492 RA Naehring J., Kiefer S., Wolf K.; RT "Nucleotide sequence of a complete ribosomal RNA gene cluster of RT Schizosaccharomyces japonicus var. versatilis and its phylogenetic RT implications"; RL Unpublished. XX RN [2] RP 1-6492 RA Wolf K.; RT ; RL Submitted (02-MAY-1994) to the EMBL/GenBank/DDBJ databases. RL Prof. Dr. K. Wolf, Institut fuer Biologie IV, (Mikrobiologie) RL Worringer Weg, 52056 Aachen, XX FH Key Location/Qualifiers FH FT source 1..6492 FT /organism="Schizosaccharomyces japonicus" FT rRNA 549..2370 FT /note="17S rRNA" FT rRNA 2557..2714 FT /note="5.8S rRNA" FT rRNA 2977..6391 FT /note="25S rRNA" XX SQ Sequence 6492 BP; 1783 A; 1229 C; 1644 G; 1836 T; 0 other; BASE COUNT 990 a 704 c 961 g 923 t 5684 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AAACUU UCAGCAACGG AUC|UCUUGG 61 |CUCUCGC|A U|-CGAUGAA GAA|CGCA(- -GCGA-AA)U |GC-GAUACG UAaugu-|[- 121 gaauugcaga auuccgugaa u--------- ---------- ---------- -------]-- 181 ---(------ -)-------- ---caucg|A AUCUUU-GAA Cgc-(acauu )-g-c|gccu 241 uug------g g(-------- ---------- ---------- -----uuauu ---)cc---- 301 --ca-aaggc ---augccug -u-uu-gagu guca--(--- ---uu----/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------guu )--ugaccuc agaucagg-u aGG----ACU 481 AC|GCGCUGA -A--CU|UA( AGCA)UA-UC AAUAAG-C-G C-AGGACA-- --AGAAAAU( 541 AAC-C)AU-G AU|UCCCCUA GU---AAC(G GCGA)GUG-A A-----GCGG GAAA------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------aauu ugaaaucugg 781 uagag(uuuu au-u)-cuuu gc-ccgaguu guaauuuca- agaag-cug- cuuu------ 841 ----gagu-- ---------- ---------- ---------- ---------- aauga-acgu 901 cggucuaa-- --g-uuc-c( u-(uggaac- )a)gga-c-- ---------- --------GU 961 --|C(AGA)G |AGGG-(UGA GAAC)-CCCG UC|--uuugg ccgaugugcu u-----ugcc 1021 a---uau--- aaagcgcu-- uucuaa---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGAGUU GUU(----UG 1141 GGAA)UGCAG CUCUAA---- AUGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUGAAUUU-- ---------- ---------- ---------- )CAU-CUAAA GCU----AAA 1381 UA-------- ---------- UUGGC-GAGA GACCGAUAGC GAAC-AAGUA GA(GUGA)U- 1441 CcGAAAGAUG -AAA-AGAAC UUU(ga-aa- )AGAG-AGUU A-AAUAGUAC G-UGAAAU-U 1501 GCUGA-AGG< gg---aagca uuggaaac-c a--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- -------guc uuaccuuggu gag--aucag 2221 cuguuua(cu ug-)uagac- agugca-cu- -cugaaccu- agguag-guc agca-|ucag 2281 uuuuc-gggg acggaaaaag -aauaaggga auguggcuuu uggg-(cuug -)-cucagaa 2341 gugu-uaua- gcccuuauu- -guaauacgc ccacugg-gg acugaggucu g--cgac--- 2401 ---------- -----(uuu- ----)----- ---------g uca------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ------agga 2521 ugcu-gac-- ---------- aua-a---ug guuuucaaug >------GCC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAGCAUCUAU GCGAGUGu-u ugggu----( ------ggcu 2641 aa)------- ---------- ---a-ccca- ---------- --uaCGCGAA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ----augcag guggga--ac ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----uuuuu- ----)----- ---------- --------gu --gcaccacc 3061 g--------- ---------- ---------- ---------- -------gcc ga-uccggaa 3121 guu(u-guc- -)aauggaa- ggau-uugag c]-------- ---------A AGAGCAUAG- 3181 -CUG-UUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AA|U-AGGGC GAAGAGAC-G 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-GUUCUGA (CGCGCAAA) 3301 UCG-A-UCGU CAAAUUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCUGC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-AGAA -AAUc-a|ga u|-------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 c-aguUUUAU -G|AGG--UA AA-GCGAAUG AUUAGAGGC- -----CUUGG GGAA--(GUA 3721 A-U)--UUUC U-CAA-|CCU AUUC-UCAAA CUUUA-AAUA |UGUAAGacg -cccuuguc- 3781 -gauuaauug gacguggg-c uuucg----- ---------- ---------- ---------- 3841 ---------- ---------- ----AAUg-a g|AG-UUUCU -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- AACGCGA--- GGUUAAG--G 3961 U|GCCG-GAA U-G--CA-CG CUCAU-ca-- --------ga caccag---- -AAAAGGUGU 4021 U--AGUUCAU CUAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAACU AGA|AA-UGA AAA--UGGAU 4141 G--GCG-CU- UAAGCGUGC| U|-------- --ACCCAU-- --ACCUCGC| (- -----)-gcu uagac-gAGU AGGC------ 4441 --AGG|-CG- UG-GA-GG-- --------u- -cAG-Uga-- c------GAA GCCU-----U 4501 G-GGC(GUAA -)GCU-GGG- UCG|A-ACG| G--CCUCUA- GUGC-AGA-U CUUGGU|GG- 4561 AAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GACUGAAGU G-GGG|AAAG GUU|CCAUGU GA-ACA(-GC AGU)UG|GAC 4681 AUGGGUUAGU |-CGA-uaaU AAGA------ -------<-g auaggg(-aa gc)ucc--gu 4741 u---ugaaag u-acacg--- ---------- ---------- (auucuu--) ---------- 4801 --------cg ugucaccua- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA AGGGA-AU-C CGG(UUAAUA UU-)CCGGA| -AC----cag gaugugg-au 4981 uc[ucc---- ---------- ---------- ---------- -----acg(- -gcaa--)cg 5041 u--------- ---------- ---------- ---------- -----aa-a] uga-aguugg 5101 agac-----g ucg--guggg ag-c-ccug- -GG-AAGA(G UUCUCUUU-) UCUUUU-|UA 5161 A-caaacc-- ---------a auc|a----C CCUG-AAAUC ----GG(UUU AU-)CCGGAG 5221 CU-AG-GG-- uauag----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----uguu-u gGU-----AG 5341 AGCUCAGCG( --ccuc--)U GCUGGGUC-c ggugcg---c -ucuca--ac ggcC-CUUGA 5401 AAA-uccaac -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaaggaa-- ---------- ----uaguuu --uc-acg-- cc-uggUCGU 5581 A|CU--CAUA ACC(GCAGCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| AGUUG-||A- 5641 UA-G--AACA AU-GUAG-AU A-AGGGAAGU CGGCAA-AAU -AGAUCCGUA AC(UUCG)GG 5701 AUAAGGAUU| GGCUCUAAG- ---------- -(-----)---- -------CUU AGAACU|G(- --GUA)CGGA 6601 CAAGGGGAAU C|-UGACUGU CU(AAUUA)A AACAUAGCAU UGCG|A--UG G|CCA(---g 6661 aaag)UGG-- ---------- --U-GUUGAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAccUAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU AUCUACUAUC 6901 UA|GCGAAAC C|aca-GCCA AG(GGAA-CG GG)CUUGGCA -A-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUUU G---ACA-UU |GUGAAGAGA CAUAGAGGGU 7021 GUAGCAUAAG UGGGAGC--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -UUCG)---- 7141 ---------G C-GCCAGUGA AA-UACCACU |ACCUUUAU- -AGUUU-CUU UACUUAA--- 7201 ------(--- --)------| --u -ACAU-UGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUCU (UAAAAGAUA AC-)GCAG-G U|G|U|CCU- AAGGG-GGAC |UCAUC-GAG 7621 -A(ACA---- GAAA)UCUCG AGUAGA|AC( A|A--AAGG) GUAAAAG-UC C-CCUUGAUU 7681 -UUGAUUU(u c--agugu-- )GAAUACAAA CCAU(-GAAA )GUGUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- ucaC-CUC(- -GAAA-U--U C---)----- ---------- 7861 -----GAG|G AUAGAG-GUG CC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UA C-CGAAG(CA -GA-)AUUCG GUAA-GCGU| UGGAU(UGUU C)ACCCACUA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-A<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->--uGU CG-UC-GC-A AUGGUAAUUC AACU(UAGUA 8281 C(GAGA)GGA AC-)CGUUGA U|UCAGAUGG UUGGUAUUUG CGG|-CUGCC U(GACA)AGG 8341 CAAUGCCGCG A-AGUCAUC- AU-CUGC--C GGAUAACGGC U(GAACGCUC U-C-A)AGUC 8401 AGAAUCCG-U GCCA--g-aa aGCG--ACGA U --|------( ---)------ 8701 ----cgaauc |cuuug(-ca uacga)cu-u aaaug---ug g-a|acgggg uauuguaagc 8761 ag-uagagua gc----(cuu -guu------ ---------- ---------- ---------- 8821 ----)----g uuacgauccu gcc|ugagau u|aag--ccu u--ugu-u-c cca-aga-uu 8881 u----|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS S.pombe 9262 bp RNA RNA 11-JAN-191 DEFINITION Schizosaccharomyces pombe. ACCESSION No information KEYWORDS No information. SOURCE Schizosaccharomyces pombe. ORGANISM Schizosaccharomyces pombe. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: Z19136 ID SP25SRNAA standard; DNA; FUN; 3484 BP. XX AC Z19136; XX DT 18-DEC-1992 (Rel. 34, Created) DT 18-DEC-1992 (Rel. 34, Last updated, Version 1) XX DE S.pombe 25S rRNA gene. XX KW 25S rRNA gene. XX OS Schizosaccharomyces pombe (yeast) OC Eukaryota; Plantae; Thallobionta; Eumycota; Hemiascomycetes; OC Endomycetales; Saccharomycetaceae. XX RN [1] RP 1-3484 RA Lapeyre B.B., Feliu J.J.; RT "Nucleotide sequence of the 25S ribosomal RNA from RT Schizosaccharomyces pombe"; RL Unpublished. XX RN [2] RP 1-3484 RA Lapeyre B.; RT ; RL Submitted (17-DEC-1992) on tape to the EMBL Data Library by: RL Lapeyre B., Laboratoire de Biologie Moleculaire Eucaryote du CNRS, RL 118 Route de Narbonne, Toulouse, FRANCE, 31062 XX CC *source: strain=972; XX FH Key Location/Qualifiers FH FT rRNA <1..>3484 FT /product= "25S rRNA" FT /citation= ([1]) XX SQ Sequence 3484 BP; 943 A; 675 C; 965 G; 901 T; 0 other; LOCUS YSPRGBP 1359 bp ds-DNA PLN 01-AUG-1984 DEFINITION Yeast (s.pombe) ribosomal RNA gene cluster: 5.8s (complete); 17s (3'-end); 25s (5'-end). ACCESSION J01359 KEYWORDS 17S ribosomal RNA; 25S ribosomal RNA; 5.8S ribosomal RNA; repetitive sequence; ribosomal RNA. SOURCE Yeast (schizosaccharomyces pombe) DNA, clones pym32 and pym55 [1]. ORGANISM Schizosaccharomyces pombe Eukaryota; Fungi; Eumycota; Hemiascomycetes; Endomycetales; Saccharomycetaceae. REFERENCE 1 (bases 1 to 1359) AUTHORS Schaak,J., Mao,J.I. and Soell,D.G. TITLE The 5.8S RNA gene sequence and the ribosomal repeat of Schizosaccharomyces pombe JOURNAL Nucleic Acids Res. 10, 2851-2864 (1982) COMMENT The 5' end of the 5.8s rRNA in S.pombe shows heterogeneity with respect to length; the two major species are 159 and 164 bp long. EMBL features not translated to GenBank features: key from to description RRNA <1 437 17S rRNA RRNA 850 1014 5.8S rRNA RRNA 858 1014 5.8S rRNA RRNA 1316 >1359 25S rRNA UNSURE 759 759 A may be not present UNSURE 1036 1036 T may be not present. FEATURES Location/Qualifiers rRNA <1..437 /note="17s rrna" unsure 759..761 /note="aaa in pym32; aa in pym55" rRNA 850..1014 /note="5.8s rRNA (longest species)" rRNA 857..1014 /note="5.8s rRNA (shortest species)" unsure 1036..1037 /note="tt in pym32; ttt in pym55" rRNA 1315..>1359 /note="25s rrna" BASE COUNT 417 a 200 c 243 g 499 t ORIGIN 211 bp upstream of EcoRI site. BASE COUNT 991 a 713 c 1003 g 955 t 5600 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~auua uuuaAAACUU UCAGCAACGG AUC|UCUUGG 61 |CUCUCGC|A U|-CGAUGAA GAA|CGCA(- -GCGA-AA)U |GC-GAUACG UAaugu-|[- 121 gaauugcaga auuccgugaa u--------- ---------- ---------- -------]-- 181 ---(------ -)-------- ---caucg|A AUCUUU-GAA Cgc-(acauu )-g-c|gccu 241 uug------g g(-------- ---------- ---------- -----uucu- ---)ac---- 301 --ca-aaggc ---augccug -u-uu-gagu guca--(--- ---uu----/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------auu )--ugaccuc aaaucagg-u aGG----ACU 481 AC|GCGCUGA -A--CU|UA( AGCA)UA-UC AAUAAG-C-G C-AGGAAA-- --AGAAAAU( 541 AAC-C)AU-G AU|UCCCUCA GU---AAC(G GCGA)GUG-A A-----GCGG GAAA------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------aauu ugaaaucugg 781 caaca(uuuc uu-u)-uguu gu-ccgaguu guaauuuca- agaag-cug- cuuu------ 841 ----gagu-- ---------- ---------- ---------- ---------- guaga-cgau 901 cggucuaa-- --g-uuc-c( u-(uggaac- )a)gga-c-- ---------- --------GU 961 --|C(AGA)G |AGGG-(UGA GAAC)-CCCG UC|---uuug gucgauug-g a-----uaug 1021 cc-auau--- aaagcgcu-- uucgaa---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGAGUU GUU(----UG 1141 GGAA)UGCAG CUCUAA---- AUGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUU-- ---------- ---------- ---------- )CAU-CUAAA GCU----AAA 1381 UA-------- ---------- UUGGC-GAGA GACCGAUAGC GAAC-AAGUA GA(GUGA)U- 1441 C-GAAAGAUG -AAA-AGAAC UUU(ga-aa- )AGAG-AGUU A-AAUAGUAC G-UGAAAU-U 1501 GCUGA-AAG< gg---aagca uuggaaau-c a--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- -------guc uuaccugggu gag--aucag 2221 uagucuc(uu cgc)gagac- uaugca-cu- -cugaaccug ugguag-guc agca-|ucag 2281 uuuuc-gggg gcggaaaaag -aauaaggga agguggcuuu ccggg(uucu g)ccugggga 2341 guguuuaua- gcccuuguu- -guaauacgu ccacugg-gg acugaggacu g--cggc--- 2401 ---------- -----(uucg u---)----- ---------g cca------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ------agga 2521 ugcu-gac-- ---------- aua-a---ug guuuucaaug >------GCC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAGCAUCUAU GCGAGUGu-u ugggu----( ----g-auga 2641 aa)------- ---------- ---a-ccca- ---------- --ucCGCGAA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ----augcag guggga--ac gcc------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----cuugu- ----)----- ---------- -----ggcgu --gcaccauc 3061 g--------- ---------- ---------- ---------- -------acc ga-cccggaa 3121 guu(u-guc- -)aauggaa- gggu-uugag u]-------- ---------A AGAGCAUAG- 3181 -CUG-UUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AA|U-AGGGU GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G AG-AUUCUGA (CGUGCAAA) 3301 UCG-A-UCUU CAAAUUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCUGC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-AGAA -ACUc-a|ga u|-------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 c-aguUUUAU -G|AGG--UA AA-GCGAAUG AUUAGAGGU- -----CUUGG GGAA--(GGA 3721 A-U)--UUCC U-CAA-|CCU AUUC-UCAAA CUUUA-AAUA |UGUAAGacg -cccuuguc- 3781 -gcuuaauug gacguggg-c caucg----- ---------- ---------- ---------- 3841 ---------- ---------- ----AAUg-a g|AG-UUUCU -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- AACGUGA--- GGUUAAG--G 3961 U|GCCG-GAA U-G--UA-CG CUCAU-ca-- --------ga caccag---- -AAAAGGUGU 4021 U--AGUUCAU CUAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- UAAGCGUAC| U|-------- --ACCCAU-- --ACCUCAC| (- -----)agcu cagac-gAGU AGGC------ 4441 --AGG|-CG- UG-GA-GG-- --------u- -uUG-Uga-- c------GAA GCCU-----U 4501 G-GGC(GUGA -)GCCUGGG- UCG|A-ACA| G--CCUCUA- GUGC-AGA-U CUUGGU|GG- 4561 AAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GACUGAAGU G-GGG|AAAG GUU|CCAUGU GA-ACA(-GC AGU)UG|GAC 4681 AUGGGUUAGU |-CGA-UCCU AAGA------ -------<-g auaggg(-aa gc)ucc--gu 4741 a---ugaaag uugcacg--- ---------- ---------- (auuuuu--) ---------- 4801 --------cg ugccuccua- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA AGGGA-AU-C CGG(UUAAUA UU-)CCGGA| -AC----cag aaggugg-aa 4981 uc[aac---- ---------- ---------- ---------- -----acg(- -gcaa--)cg 5041 u--------- ---------- ---------- ---------- -----aa-a] uga-aguugg 5101 agac-----g ucg--gcggg ag-c-ccug- -GG-AAGA(G UUCUCUUU-) UCUUUU-|UA 5161 A-caaacca- ------uuga acu|a----C CCUG-AAAUC ----GG(UUU AU-)CCGGAG 5221 CU-AG-GG-- uaugg----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----uguu-u gGA-----AG 5341 AGUUCAGCG( --ccuca-)U GCUGAAUC-c ggugcg---c -ucucg--ac ggcC-CUUGA 5401 AAA-uccaac -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaagaaugg acc(uucg)g gucuu-guuu --uc-aca-- uc-uggUCGU 5581 A|CU--CAUA ACC(GCAGCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| AGUUG-||A- 5641 UA-G--AACA AU-GUAG-AU A-AGGGAAGU CGGCAA-AAU -GGAUCCGUA AC(UUCG)GG 5701 AUAAGGAUU| GGCUCUAAG- ---------- -(-----)---- -------CUU AGAACU|G(- --GUA)CGGA 6601 CAAGGGGAAU C|-UGACUGU CU(AAUUA)A AACAUAGCAU UGCG|A--UG G|CCA(---g 6661 aaag)UGG-- ---------- --U-GUUGAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAACU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU AUCUACUAUC 6901 UA|GCGAAAC C|aca-gCCU GG(GGAA-CG GG)CCAGGCA -A-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUUU G---ACA-UU |GUGAAGAGA CAUAGAGGGU 7021 GUAGGAUAAG UGGGAGU--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- -augu-->(- -UUCG)gcau 7141 ---------A C-GCCGGUGA AA-UACCACU |ACCUUUAU- -CGUUU-CUU UACUUAA--- 7201 ------(--- --)------| --u GACAU-UGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAAAGAUA AC-)GCAG-G U|G|U|CCU- AAGGG-GGAC |UCAUC-GAG 7621 -A(ACA---- GAAA)UCUCG AGUAGA|AU( A|A--AAGG) GUAAAAG-UC C-CCUUGAUU 7681 -UUGAUUU(u c--agugu-- )GAAUACAAA CCAU(-GAAA )GUGUGG|CC --UAU|CGA- 7741 UCCUUUGU-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -ucC-CUC(- -GAAA-U--U U---)----- ---------- 7861 -----GAG|G ACAGAG-GUG CC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUUCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UA C-CGAAG(CA -GA-)AUUCG GUAA-GCGU| UGGAU(UGUU C)ACCCACUA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-A<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->-guGU CG-UC-GC-A AUGGUAAUUC AACU(UAGUA 8281 C(GAGA)GGA AC-)CGUUGA U|UCAGAUCA UUGGUAUUUG CGG|-CUGCC U(GACA)AGG 8341 CAAUGCCGCG G-AGCUAUC- AU-CUGC--C GGAUAACGGC U(GAACGCCU C-U-A)AGCC 8401 AGAAUCCG-U GCCA--g-aa aGCG--ACGA U<-uuuuugg uccgcaug-a uuuauaugua 8461 uaaaaauaga -gguaggacu -uguuccuac ucuccuguau cguagaagau gggcgauggu 8521 ugaugaaac- ggaagu-gu- uuua-uugac uuguccau-g aaauuccauu gaaaucu--- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------u gugcggaau> --|------( ---)------ 8701 ----cgaauc |cauug(-ca uacga)cu-u uaaug---ug g-a|acgggg uauuguaagc 8761 ag-uagagua gc----(cuu -guu------ ---------- ---------- ---------- 8821 ----)----g uuacgauc-u gc-|ugagau u|aag--ccu u--ugu-u-c cca-aga-uu 8881 ugu--|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (6)-Euasco 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS P.aurantio 9262 bp RNA RNA 03-SEP-1997 DEFINITION Penicillium aurantiogriseum.; . ACCESSION AF0033 5 KEYWORDS . SOURCE Penicillium aurantiogriseum. ORGANISM Penicillium aurantiogriseum. REFERENCE 1 (bases 1 to 1727) AUTHORS Seifert,K.A. and Louis-Seize,G. TITLE beta-tubulin gene DNA sequences Phylogeny and species concepts in the Penicillium aurantiogriseum complex as inferred from partial JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1727) AUTHORS Seifert,K.A. and Louis-Seize,G. TITLE Direct Submission JOURNAL Submitted (09-MAY-1997) Agriculture & Agri-Food Canada, Eastern Cereal and Oilseed Research Centre, Wm. Saunders Bldg., Ottawa, Ont K1A 0C6, Canada STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF003355 BASE COUNT 440 a 387 c 521 g 379 t 7535 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~(~~~~~~ ~)~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~--~~|~~( ~~~~)~~-~~ ~~~~~~~~~~ ~~~~~AAA-- --AGAAACC( 541 AAC-A)GG-G AU|UGCCCCA GU---AAC(G GCGA)GUG-A A-----GCG- caag------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------aauu ugaaagcugg 781 cucc-(-uuc ----)--ggg gu-ccgcauu guaauuugc- agagg--aug cuuc------ 841 ----ggga-- ---------- ---------- ---------- ---------- gc-gg-uccc 901 cauc-uaa-- --g-ugc-c( c-(uggaac- )g)gga-c-- ---------- --------GU 961 --|C(AUA)G |AGGG-(UGA GAAU)-CCCG UA|-----ug gauggggugu c----cgcgc 1021 ccgugu---- gaagcucc-- uucgac---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGAGUU GUU(----UG 1141 GGAA)UGCAG CUCUAA---- AUGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUU-- ---------- ---------- ---------- )CAU-CUAAA GCU----AAA 1381 UA-------- ---------- UUGGC-CGGA GACCGAUAGC GCAC-AAGUA GA(GUGA)U- 1441 C-GAAAGAUG -AAA-AGCAC UUU(ga-aa- )AGAG-AGUU A-AAAAGCAC G-UGAAAU-U 1501 GUUGA-AAG< gg---aagcg cuu-gcac-c a--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- -------gac ---------u c--------- 2221 ---gcuc-gc ggguucagcc ggcauucgug cguguacuuc ccgcggcgcc agcg--ucgg 2281 -uuug-ggcg gucggucaaa ggcccucgga aggua-acgc c-----cu-- ---------a 2341 gucuguaua- gcc-gaggg- ---ugcaaug c--------- ------gacu g--c------ 2401 ---------- -------uaa ---------- ---------- ---------- ---------- 2461 ---caacccu ucgcucgac- ---------- ---------- ---------- ---------- 2521 -gcu--gc-- ---------- aua-a----a --gcgaagcg >-------aC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUCUAC GCGAGUGu-u cgggu----( -------guc 2641 aa)------- ---------- ---a-cccg- ---------- --ugCGCGAA GU(GAAA)GC 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ----acggag guggga--ac cu-------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( -----uac-- ----)----- ---------- ------gggu --gcaccauc 3061 g--------- ---------- ---------- ---------- -------acc ga-ucc-uga 3121 ag-(u-cuu- -)-cggau-- ggau-uugag u]-------- ---------A AGAGCGUAG- 3181 -CUG-UUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AA|U-AGGGC GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-GUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU CGAAUUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUGGUAGC UGGUUCCUGC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-AGUA -ACGccg|aa u|-------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------u 3661 c-aguUUUAU -G|AGG--UA AA-GCGAAUG AUUAGAGGC- -----CUUGG GGUU--(GAA 3721 A-C)--AACC U-UAA-|CCU AUUC-UCAAA CUUUA-AAUA |UGUAAGaag -cccuuguu- 3781 -gcuuaauug aacguggg-c auuag----- ---------- ---------- ---------- 3841 ---------- ---------- ----AAUgau g|CG-UUACU -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- AACGCGA--- GGUUAAG--G 3961 U|GCCG-GAA U-A--CA-CG CUCAU-ca-- --------ga caccac---- -AAAAGGUGU 4021 U--AGUUCAU CUAGACA-GC CCGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACGGGCC -GAAUGAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- UAAGCGUGU| U|-------- --ACCCAU-- --ACCUCGC| (- -----)-gcc cugac-gAGU AGGC------ 4441 --AGG|-CG- UG-GG-GG-- --------u- -cCG-Uga-- c------GAA GCCU-----U 4501 G-GGA(GUGA -)UCCCGGG- UCG|A-ACG| G--CCCCUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UACUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAG |GACUGAAGU G-GGG|AAAG GUU|CCAUGU GA-ACA(-GC AGU)UG|GAC 4681 AUGGGUUAGU |-CGA-UCCU AAGG------ -------<-c auaggg(-aa gu)ucc--gu 4741 u---uuaaag ---ccu---- --cgugcgc- -------cgu u------ug- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----CC-GAA AGGGA-AG-C CGG(UUAACA UU-)CCGGC| -AC----cua gaugugg-au 4981 uc[ucc---- ---------- ---------- ---------- -----acg(- -gcaa--)cg 5041 u--------- ---------- ---------- ---------- -----aa-c] uga-acgcgg 5101 agac-----g ucg--gcggg gg-u-ccug- -GG-AAGA(G UUCUCUUU-) UCUUCU-|UG 5161 A-cagccu-- ---------- auc|a----C CCUG-AAAUC ----GG(UUU GU-)CCGGAG 5221 CU-AG-GG-- uucua----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----uggc-u gGC-----AG 5341 A---CGCga( --ccuu--)u ugcgcguc-c ggugcg---c -ccccg--ac gacC-CUUGA 5401 AAA-uccgcg -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaaggaa-- ---------- ----uaguuu --uc-acg-- cu-aggU~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~-~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- (~~~~~)~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~-~~~ ~|~~~(~--~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~-~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-->(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ -~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(- -~~~~~~~~~ ~~~-)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~-)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<-~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS P.cyclopiu 9262 bp RNA RNA 03-SEP-1997 DEFINITION Penicillium cyclopium.; . ACCESSION AF0033 6 KEYWORDS . SOURCE Penicillium cyclopium. ORGANISM Penicillium cyclopium. REFERENCE 1 (bases 1 to 1740) AUTHORS Seifert,K.A. and Louis-Seize,G. TITLE aurantiogriseum complex as inferred from partial beta-tubulin gene DNA sequences Phylogeny and species concepts in the Penicillium JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1740) AUTHORS Seifert,K.A. and Louis-Seize,G. TITLE Direct Submission JOURNAL Submitted (09-MAY-1997) Agriculture & Agri-Food Canada, Eastern Cereal and Oilseed Research Centre, Wm. Saunders Bldg., Ottawa, Ont K1A 0C6, Canada STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF003356 BASE COUNT 438 a 391 c 529 g 382 t 7522 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~(~~~~~~ ~)~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~--~~|~~( ~~~~)~~-~~ ~~~~~~~~~~ ~~~~~~~A-- --AGAAACC( 541 AAC-A)GG-G AU|UGCCCCA GU---AAC(G GCGA)GUG-A A-----GCG- caag------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------aauu ugaaagcugg 781 cucc-(-uuc ----)--ggg gu-ccgcauu guaauuugc- agagg--aug cuuc------ 841 ----ggga-- ---------- ---------- ---------- ---------- gc-gg-uccc 901 cauc-uaa-- --g-ugc-c( c-(uggaac- )g)gga-c-- ---------- --------GU 961 --|C(AUA)G |AGGG-(UGA GAAU)-CCCG UA|-----ug gauggggugu c----cgcgc 1021 ccgugu---- gaagcucc-- uucgac---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGAGUU GUU(----UG 1141 GGAA)UGCAG CUCUAA---- AUGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUU-- ---------- ---------- ---------- )CAU-CUAAA GCU----AAA 1381 UA-------- ---------- UUGGC-CGGA GACCGAUAGC GCAC-AAGUA GA(GUGA)U- 1441 C-GAAAGAUG -AAA-AGCAC UUU(ga-aa- )AGAG-AGUU A-AAAAGCAC G-UGAAAU-U 1501 GUUGA-AAG< gg---aagcg cuugc-gacc a--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- -------gac ---------u c--------- 2221 ---gcuc-gc ggguucagcc ggcauucgug cguguacuuc ccgcggcgcc agcg--ucgg 2281 -uuug-ggcg gucggucaaa ggcccucgga agguaacgcc c-----cu-- ------agug 2341 c--u-uaua- gcc------- --------ga gggugca-a- ---------u g--cgac--- 2401 ---------- ---------- ---------- ---------- --cugccuag accgaggaac 2461 gcgcuucggc ucggac---- ---------- ---------- ---------- ---------- 2521 -gcu-ggc-- ---------- aua-a---ug uc-guaagcg >-------aC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUCUAC GCGAGUGu-u cgggu----( -------guc 2641 aa)------- ---------- ---a-cccg- ---------- --ugCGCGAA GU(GAAA)GC 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ----acggag guggga--ac cu-------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( -----uac-- ----)----- ---------- ------gggu --gcaccauc 3061 g--------- ---------- ---------- ---------- -------acc ga-ucc-uga 3121 ag-(u-cuu- -)-cggau-- ggau-uugag u]-------- ---------A AGAGCGUAG- 3181 -CUG-UUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AA|U-AGGGC GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-GUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU CGAAUUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUGGUAGC UGGUUCCUGC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-AGUA -ACGc-g|aa u|-------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------u 3661 c-aguUUUAU -G|AGG--UA AA-GCGAAUG AUUAGAGGC- -----CUUGG GGUU--(GAA 3721 A-C)--AACC U-UAA-|CCU AUUC-UCAAA CUUUA-AAUA |UGUAAGaag -cccuuguu- 3781 -gcuuaauug aacguggg-c auuag----- ---------- ---------- ---------- 3841 ---------- ---------- ----AAUgau g|CG-UUACU -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- AACGCGA--- GGUUAAG--G 3961 U|GCCG-GAA UUA--CA-CG CUCAU-ca-- --------ga caccac---- -AAAAGGUGU 4021 U--AGUUCAU CUAGACA-GC CCGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACGGGCC -GAAUGAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- UAAGCGUGU| U|-------- --ACCCAU-- --ACCUCGC| (- -----)-gcc cugac-gAGU AGGC------ 4441 --AGG|-CG- UG-GG-GG-- --------u- -cCG-Uga-- c------GAA GCCU-----U 4501 G-GGA(GUGA -)UCCCGGG- UCG|A-ACG| G--CCCCUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UACUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAG |GACUGAAGU G-GGG|AAAG GUU|CCAUGU GA-ACA(-GC AGU)UG|GAC 4681 AUGGGUUAGU |-CGA-UCCU AAGG------ -------<-c auaggg(-aa gu)ucc--gu 4741 u---uuaaag --cccu---- --cgugcgc- -------cgu u------ug- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----CC-GAA AGGGA-AG-C CGG(UUAACA UU-)CCGGC| -AC----cua gaugugg-au 4981 uc[ucc---- ---------- ---------- ---------- -----acg(- -gcaa--)cg 5041 u--------- ---------- ---------- ---------- -----aa-c] uga-acgcgg 5101 agac-----g ucg--gcggg gg-u-ccug- -GG-AAGA(G UUCUCUUU-) UCUUCU-|UG 5161 A-cagccu-- ---------- auc|a----C CCUG-AAAUC ----GG(UUU GU-)CCGGAG 5221 CU-AG-GG-- uucua----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----uggc-u gGC-----AG 5341 A---cggca( --ccuu--)u ugcgcguc-c ggugcg---c -ccccg--ac gacC-CUUGA 5401 AAA-uccgcg -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaaggaa-- ---------- ----uaguuu --uc-acg-- cu-a~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~-~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- (~~~~~)~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~-~~~ ~|~~~(~--~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~-~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-->(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ -~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(- -~~~~~~~~~ ~~~-)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~-)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<-~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS P.expansum 9262 bp RNA RNA 03-SEP-1997 DEFINITION Penicillium expansum.; . ACCESSION AF0033 9 KEYWORDS . SOURCE Penicillium expansum. ORGANISM Penicillium expansum. REFERENCE 1 (bases 1 to 1703) AUTHORS Seifert,K.A. and Louis-Seize,G. TITLE aurantiogriseum complex as inferred from partial beta-tubulin gene DNA sequences Phylogeny and species concepts in the Penicillium JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1703) AUTHORS Seifert,K.A. and Louis-Seize,G. TITLE Direct Submission JOURNAL Submitted (09-MAY-1997) Agriculture & Agri-Food Canada, Eastern Cereal and Oilseed Research Centre, Wm. Saunders Bldg., Ottawa, Ont K1A 0C6, Canada STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF003359 BASE COUNT 423 a 385 c 521 g 374 t 7559 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~(~~~~~~ ~)~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~--~~|~~( ~~~~)~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~CCCCA GU---AAC(G GCGA)GUG-A A-----GCG- caag------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------aauu ugaaagcugg 781 cucc-(-uuc ----)--ggg gu-ccgcauu guaauuugc- agagg--aug cuuc------ 841 ----ggga-- ---------- ---------- ---------- ---------- gc-gg-uccc 901 cauc-uaa-- --g-ugc-c( c-(uggaac- )g)gga-c-- ---------- --------GU 961 --|C(AUA)G |AGGG-(UGA GAAU)-CCCG UA|-----ug gauggggugu c----cgcgc 1021 ccgugu---- gaagcucc-- uucgac---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGAGUU GUU(----UG 1141 GGAA)UGCAG CUCUAA---- AUGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUU-- ---------- ---------- ---------- )CAU-CUAAA GCU----AAA 1381 UA-------- ---------- UUGGC-CGGA GACCGAUAGC GCAC-AAGUA GA(GUGA)U- 1441 C-GAAAGAUG -AAA-AGCAC UUU(ga-aa- )AGAG-AGUU A-AAAAGCAC G-UGAAAU-U 1501 GUUGA-AAG< gg---aagcg cuugc-ac-c a--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- -------gac -----ucgcu cgc---gg-g 2221 uucagcc-gg cau-ucgug- cguguauuu- -cccc-gcg- gc-----gcc agcg--ucgg 2281 -uuug-ggcg gucggucaaa ggcccucgga aggua-acgc c-----cu-- ---------a 2341 gucu-uaua- gcc------- --------ga gggugca-a- ---------u g--cgac--- 2401 ---------- ---------- ---------- ---------- --cugccuag accgaggaac 2461 gcgcuucggc ucggac---- ---------- ---------- ---------- ---------- 2521 -gcu-ggc-- ---------- aua-a---ug gucguaagcg >------ACC CGU(CUUGAA 2581 AC)ACG-|AC CAAGG-AGUC UAACAUCUAC GCGAGUGu-u cgggu----( -------guc 2641 aa)------- ---------- ---a-cccg- ---------- --ugCGCGAA GU(GAAA)GC 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ----acggag guggga--ac cu-------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( -----uac-- ----)----- ---------- ------gggu --gcaccauc 3061 g--------- ---------- ---------- ---------- -------acc ga-ucc-uga 3121 ag-(u-cuu- -)-cggau-- ggau-uugag u]-------- ---------A AGAGCGUAG- 3181 -CUG-UUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AA|U-AGGGC GA--cagGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-GUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU CGAAUUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUGGUAGC UGGUUCCUGC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-AGUA -ACGc-g|aa u|-------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------u 3661 c-aguUUUAU -G|AGG--UA AA-GCGAAUG AUUAGAGGC- -----CUUGG GGUU--(GAA 3721 A-C)--AACC U-UAA-|CCU AUUC-UCAAA CUUUA-AAUA |UGUAAGaag -cccuuguu- 3781 -gcuuaauug aacguggg-c auuag----- ---------- ---------- ---------- 3841 ---------- ---------- ----AAUgau g|CG-UUACU -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- AACGCGA--- GGUUAAG--G 3961 U|GCCG-GAA U-A--CA-CG CUCAU-ca-- --------ga caccac---- -AAAAGGUGU 4021 U--AGUUCAU CUAGACA-GC CCGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACGGGCC -GAAUGAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- UAAGCGUGU| U|-------- --ACCCAU-- --ACCUCGC| (- -----)-gcc cugac-gAGU AGGC------ 4441 --AGG|-CG- UG-GG-GG-- --------u- -cCG-Uga-- c------GAA GCCU-----U 4501 G-GGA(GUGA -)UCCCGGG- UCG|A-ACG| G--CCCCUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UACUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAG |GACUGAAGU G-GGG|AAAG GUU|CCAUGU GA-ACA(-GC AGU)UG|GAC 4681 AUGGGUUAGU |-CGA-UCCU AAGG------ -------<-c auaggg(-aa gu)ucc--gu 4741 u---uuaaca --gcc----- ---------- ---------- -cucg--ug- ---------- 4801 ---------c -gcc------ ---------- ---------- ---------- ------guuu 4861 g--------- ---------- ---------- ---------- ---------- ------>--- 4921 ----CC-GAA AGGGA-AG-C CGG(UUAACA UU-)CCGGC| -AC----cua gaugugg-au 4981 uc[ucc---- ---------- ---------- ---------- -----acg(- -gcaa--)cg 5041 u--------- ---------- ---------- ---------- -----aa-c] uga-acgcgg 5101 agac-----g ucg--gcggg gg-u-ccug- -GG-AAGA(G UUCUCUUU-) UCUUCU-|UG 5161 A-cagccu-- ---------- auc|a----C CCUG-AAAUC ----GG(UUU GU-)CCGGAG 5221 CU-AG-GG-- uucua----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----uggc-u gGC-----ag 5341 c---aggca( -ccuuu--)u gcggcguc-c ggugcg---c -ccccg--ac gacC-CUUGA 5401 AAA-uccgcg -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaagg~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~-~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- (~~~~~)~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~-~~~ ~|~~~(~--~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~-~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-->(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ -~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(- -~~~~~~~~~ ~~~-)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~-)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<-~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS P.verrucos 9262 bp RNA RNA 03-SEP-1997 DEFINITION Penicillium verrucosum.; . ACCESSION AF0033 7 KEYWORDS . SOURCE Penicillium verrucosum. ORGANISM Penicillium verrucosum. REFERENCE 1 (bases 1 to 1727) AUTHORS Seifert,K.A. and Louis-Seize,G. TITLE beta-tubulin gene DNA sequences Phylogeny and species concepts in the Penicillium aurantiogriseum complex as inferred from partial JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1727) AUTHORS Seifert,K.A. and Louis-Seize,G. TITLE Direct Submission JOURNAL Submitted (09-MAY-1997) Agriculture & Agri-Food Canada, Eastern Cereal and Oilseed Research Centre, Wm. Saunders Bldg., Ottawa, Ont K1A 0C6, Canada STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF003357 BASE COUNT 430 a 388 c 527 g 381 t 7536 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~(~~~~~~ ~)~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~--~~|~~( ~~~~)~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~U|UGCCCCA GU---AAC(G GCGA)GUG-A A-----GCG- caag------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------aauu ugaaagcugg 781 cucc-(-uuc ----)--ggg gu-ccgcauu guaauuugc- agagg--aug cuuc------ 841 ----ggga-- ---------- ---------- ---------- ---------- gc-gg-uccc 901 cauc-uaa-- --g-ugc-c( c-(uggaac- )g)gga-c-- ---------- --------GU 961 --|C(AUA)G |AGGG-(UGA GAAU)-CCCG UA|-----ug gauggggugu c----cgcgc 1021 ccgugu---- gaagcucc-- uucgac---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGAGUU GUU(----UG 1141 GGAA)UGCAG CUCUAA---- AUGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUU-- ---------- ---------- ---------- )CAU-CUAAA GCU----AAA 1381 UA-------- ---------- UUGGC-CGGA GACCGAUAGC GCAC-AAGUA GA(GUGA)U- 1441 C-GAAAGAUG -AAA-AGCAC UUU(ga-aa- )AGAG-AGUU A-AAAAGCAC G-UGAAAU-U 1501 GUUGA-AAG< gg---aagcg cuunc-ac-c a--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- -------gac ---------u c--------- 2221 ---gcuc-gc ggguucagcc ggcauucgug cguguacuuc ccgcggcgcc agcg--ucgg 2281 -uuug-ggcg gucggucaaa ggcccucgga aggua-acgc c-----ccag ------gu-- 2341 gc-u-uaua- gcc------- --------ga gggugca-a- ---------u g--cgac--- 2401 ---------- ---------- ---------- ---------- --cugccuag accgaggaac 2461 gcgcuucggc ucggac---- ---------- ---------- ---------- ---------- 2521 -gcu-ggc-- ---------- aua-a---ug gucguaaacg >-------aC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUCUAC GCGAGUGu-u cgggu----( -------guc 2641 aa)------- ---------- ---a-cccg- ---------- --ugCGCGAA GU(GAAA)GC 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ----acggag guggga--ac cu-------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( -----uac-- ----)----- ---------- ------gggu --gcaccauc 3061 g--------- ---------- ---------- ---------- -------acc ga-ucc-uga 3121 ag-(u-cuu- -)-cggau-- ggau-uugag u]-------- ---------A AGAGCGUCA- 3181 -GUG-UUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AA|U-AGGGC GAA-cagGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-GUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU CGAAUUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUGGUAGC UGGUUCCUGC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-AGUA -ACGccg|aa u|-------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------u 3661 c-aguUUUAU -G|AGG--UA AA-GCGAAUG AUUAGAGGC- -----CUUGG GGUU--(GAA 3721 A-C)--AACC U-UAA-|CCU AUUC-UCAAA CUUUA-AAUA |UGUAAGaag -cccuuguu- 3781 -gcuuaauug aacguggg-c auuag----- ---------- ---------- ---------- 3841 ---------- ---------- ----AAUgau g|CG-UUACU -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- AACGCGA--- GGUUAAG--G 3961 U|GCCG-GAA U-A--CA-CG CUCAU-ca-- --------ga caccac---- -AAAAGGUGU 4021 U--AGUUCAU CUAGACA-GC CCGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACGGGCC -GAAUGAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- UAAGCGUGU| U|-------- --ACCCAU-- --ACCUCGC| (- -----)-gcc cugac-gAGU AGGC------ 4441 --AGG|-CG- UG-GG-GG-- --------u- -cCG-Uga-- c------GAA GCCU-----U 4501 G-GGA(GUGA -)UCCCGGG- UCG|A-ACG| G--CCCCUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UACUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAG |GACUGAAGU G-GGG|AAAG GUU|CCAUGU GA-ACA(-GC AGU)UG|GAC 4681 AUGGGUUAGU |-CGA-UCCU AAGG------ -------<-c auaggg(-aa gu)ucc--gu 4741 u---uuaaag --gcc----- ---------- ---------- -cucg--ug- ---------- 4801 ---------c -gcc------ ---------- ---------- ---------- ------guuu 4861 g--------- ---------- ---------- ---------- ---------- ------>--- 4921 ----CC-GAA AGGGA-AG-C CGG(UUAACA UU-)CCGGC| -AC----cua gaugugg-au 4981 uc[ucc---- ---------- ---------- ---------- -----acg(- -gcaa--)cg 5041 u--------- ---------- ---------- ---------- -----aa-c] uga-acgcgg 5101 agac-----g ucg--gcggg gg-u-ccug- -GG-AAGA(G UUCUCUUU-) UCUUCU-|UG 5161 A-cagccu-- ---------- auc|a----C CCUG-AAAUC ----GG(UUU GU-)CCGGAG 5221 CU-AG-GG-- uucua----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----uggc-u gGC-----AG 5341 A---CGCga( --ccuu--)u ugcgcguc-c ggugcg---c -ccccg--ac gacC-CUUGA 5401 AAA-uccgcg -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaaggaa-- ---------- ----uaguuu --uc-acg-- cu-aggU~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~-~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- (~~~~~)~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~-~~~ ~|~~~(~--~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~-~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-->(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ -~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(- -~~~~~~~~~ ~~~-)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~-)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<-~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS P.viridica 9262 bp RNA RNA 03-SEP-1997 DEFINITION Penicillium viridicatum.; . ACCESSION AF0033 8 KEYWORDS . SOURCE Penicillium viridicatum. ORGANISM Penicillium viridicatum. REFERENCE 1 (bases 1 to 1723) AUTHORS Seifert,K.A. and Louis-Seize,G. TITLE aurantiogriseum complex as inferred from partial beta-tubulin gene DNA sequences Phylogeny and species concepts in the Penicillium JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1723) AUTHORS Seifert,K.A. and Louis-Seize,G. TITLE Direct Submission JOURNAL Submitted (09-MAY-1997) Agriculture & Agri-Food Canada, Eastern Cereal and Oilseed Research Centre, Wm. Saunders Bldg., Ottawa, Ont K1A 0C6, Canada STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF003358 BASE COUNT 429 a 389 c 525 g 380 t 7539 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~(~~~~~~ ~)~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~--~~|~~( ~~~~)~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~CCCCA GU---AAC(G GCGA)GUG-A A-----GCG- caag------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------aauu ugaaagcugg 781 cucc-(-uuc ----)--ggg gu-ccgcauu guaauuugc- agagg--aug cuuc------ 841 ----ggga-- ---------- ---------- ---------- ---------- gc-gg-uccc 901 cauc-uaa-- --g-ugc-c( c-(uggaac- )g)gga-c-- ---------- --------GU 961 --|C(AUA)G |AGGG-(UGA GAAU)-CCCG UA|-----ug gauggggugu c----cgcgc 1021 ccgugu---- gaagcucc-- uucgac---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGAGUU GUU(----UG 1141 GGAA)UGCAG CUCUAA---- AUGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUU-- ---------- ---------- ---------- )CAU-CUAAA GCU----AAA 1381 UA-------- ---------- UUGGC-CGGA GACCGAUAGC GCAC-AAGUA GA(GUGA)U- 1441 C-GAAAGAUG -AAA-AGCAC UUU(ga-aa- )AGAG-AGUU A-AAAAGCAC G-UGAAAU-U 1501 GUUGA-AAG< gg---aagcg cuugc-ac-c a--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- -------gac ---------u c--------- 2221 ---gcuc-gc ggguucagcc ggcauucgug cguguacuuc ccgcggcgcc agcg--ucgg 2281 -uuug-ggcg gucggucaaa ggcccucgga agguaacgcc c-----cu-- ------agug 2341 c--u-uaua- gcc------- --------ga gggugca-a- ---------u g--cgac--- 2401 ---------- ---------- ---------- ---------- --cugccuag accgaggaac 2461 gcgcuucggc ucggac---- ---------- ---------- ---------- ---------- 2521 -gcu-ggc-- ---------- aua-a---ug gucguaagcg >-------aC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUCUAC GCGAGUGu-u cgggu----( -------guc 2641 aa)------- ---------- ---a-cccg- ---------- --ugCGCGAA GU(GAAA)GC 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ----acggag guggga--ac cu-------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( -----uac-- ----)----- ---------- ------gggu --gcaccauc 3061 g--------- ---------- ---------- ---------- -------acc ga-ucc-uga 3121 ag-(u-cuu- -)-cggau-- ggau-uugag u]-------- ---------A AGAGCGUAG- 3181 -CUG-UUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AA|U-AGGGC GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-GUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU CGAAUUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUGGUAGC UGGUUCCUGC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-AGUA -ACGc-g|aa u|-------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------u 3661 c-aguUUUAU -G|AGG--UA AA-GCGAAUG AUUAGAGGC- -----CUUGG GGUU--(GAA 3721 A-C)--AACC U-UAA-|CCU AUUC-UCAAA CUUUA-AAUA |UGUAAGaag -cccuuguu- 3781 -gcuuaauug aacguggg-c auuag----- ---------- ---------- ---------- 3841 ---------- ---------- ----AAUgau g|CG-UUACU -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- AACGCGA--- GGUUAAG--G 3961 U|GCCG-GAA U-A--CA-CG CUCAU-ca-- --------ga caccac---- -AAAAGGUGU 4021 U--AGUUCAU CUAGACA-GC CCGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACGGGCC -GAAUGAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- UAAGCGUGU| U|-------- --ACCCAU-- --ACCUCGC| (- -----)-gcc cugac-gAGU AGGC------ 4441 --AGG|-CG- UG-GG-GG-- --------u- -cCG-Uga-- c------GAA GCCU-----U 4501 G-GGA(GUGA -)UCCCGGG- UCG|A-ACG| G--CCCCUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UACUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAG |GACUGAAGU G-GGG|AAAG GUU|CCAUGU GA-ACA(-GC AGU)UG|GAC 4681 AUGGGUUAGU |-CGA-UCCU AAGG------ -------<-c auaggg(-aa gu)ucc--gu 4741 u---uuaaca --gcc----- ---------- ---------- -cucg--ug- ---------- 4801 ---------c -gcc------ ---------- ---------- ---------- ------guuu 4861 g--------- ---------- ---------- ---------- ---------- ------>--- 4921 ----CC-GAA AGGGA-AG-C CGG(UUAACA UU-)CCGGC| -AC----cua gaugugg-au 4981 uc[ucc---- ---------- ---------- ---------- -----acg(- -gcaa--)cg 5041 u--------- ---------- ---------- ---------- -----aa-c] uga-acgcgg 5101 agac-----g ucg--gcggg gg-u-ccug- -GG-AAGA(G UUCUCUUU-) UCUUCU-|UG 5161 A-cagccu-- ---------- auc|a----C CCUG-AAAUC ----GG(UUU GU-)CCGGAG 5221 CU-AG-GG-- uucua----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----uggc-u gGC-----AG 5341 A---CGCga( --ccuu--)u ugcgcguc-c ggugcg---c -ccccg--ac gacC-CUUGA 5401 AAA-uccgcg -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaaggaa-- ---------- ----uaguuu --uc-acg-- cu-agu~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~-~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- (~~~~~)~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~-~~~ ~|~~~(~--~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~-~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-->(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ -~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(- -~~~~~~~~~ ~~~-)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~-)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<-~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (6)-Hemias 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS A.adeniniv 9262 bp RNA RNA 11-JAN-191 DEFINITION Arxula adeninivorans. ACCESSION No information KEYWORDS No information. SOURCE Arxula adeninivorans. ORGANISM Arxula adeninivorans. REFERENCE 1 (bases 1 to 1723) AUTHORS Roesel,H. and Kunze,G. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: Z50840 LOCUS AA25SLS3 3882 bp DNA PLN 22-AUG-1995 DEFINITION A.adeninivorans 25S rRNA gene. ACCESSION Z50840 KEYWORDS 25S ribosomal RNA; 25S rRNA gene. SOURCE Arxula adeninivorans. ORGANISM Arxula adeninivorans Eukaryotae; mitochondrial eukaryotes; Eumycota; Arxula. REFERENCE 1 (bases 1 to 3882) AUTHORS Roesel,H. and Kunze,G. TITLE Characterization of the 25S rDNA from the yeast Arxula adeninivorans Ls3 JOURNAL Unpublished REFERENCE 2 (bases 1 to 3882) AUTHORS Kunze,G. and Kunze,I. TITLE Characterization of Arxula adeninivorans strains from different habitats JOURNAL Antonie Van Leeuwenhoek 65, 29-34 (1994) REFERENCE 3 (bases 1 to 3882) AUTHORS Kunze,G. TITLE Direct Submission JOURNAL Submitted (21-AUG-1995) to the EMBL/GenBank/DDBJ databases. Kunze G., Institut fuer Pflanzengenetik und Kulturpflanzenforschung, Molekulare Zellbiologie, Corrensstrasse 3, Gatersleben, Sachsen-Anhalt, Germany, D-06466 COMMENT NCBI gi: 951224 FEATURES Location/Qualifiers source 1..3882 /organism="Arxula adeninivorans" /strain="Ls3" /clone="pAL3R und pBS3_R1" /clone_lib="lambda gt11" /chromosome="I" rRNA join(93..2900,3312..3882) /gene="25S rRNA" /evidence=experimental /product="25S ribosomal RNA" exon 93..2900 /gene="25S rRNA" /evidence=experimental /number=1 prim_transcript 93..3882 /gene="25S rRNA" /evidence=experimental intron 2901..3311 /gene="25S rRNA" /cons_splice=(5'site:NO,3'site:NO) /evidence=experimental /number=1 exon 3312..3882 /gene="25S rRNA" /evidence=experimental /number=2 BASE COUNT 1051 a 779 c 1051 g 1001 t ORIGIN BASE COUNT 915 a 668 c 926 g 870 t 5883 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~(~~~~~~ ~)~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~guu )--ugaccuc aaaucagg-c aAG----ACU 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UC AAUAAG-C-G G-AGGAAA-- --AGAAACC( 541 AAC-C)GG-G AU|UGCCCUA GU---AAC(G GCGA)GCG-A A-----G-GC CAAA------ 601 ---------- ---------- ---------- ---------- -AGUCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------aauu ugaaaucugg 781 cguc-(-cua cg--)--ggc gu-ccgaguu guaauuuga- agaug-guaa cuuu------ 841 ----gggu-- ---------- ---------- ---------- ---------- uu-gg-cucu 901 ugca-uaa-- --g-uuc-c( u-(uggaac- )a)gga-c-- ---------- --------GU 961 --|C(AUA)G |AGGG-(UGA GAAU)-CCCG UU|--c-aug guaagaug-c c-----cauu 1021 c--cuuu-gu aaagugcc-- uucgaa---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGAGUU GUU(----UG 1141 GGAA)UGCAG CUCUAA---- GUGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUC-- ---------- ---------- ---------- )CAU-CUAAG ACU----AAA 1381 UA-------- ---------- UUGGCCGAGA GACCGAUAGC GAAC-AAGUA CA(GUGA)Uc 1441 G-GAAAGAUG -AAA-AGAAC UUU(ga-aa- )AGAG-AGUG A-AAAAGUAC G-UGAAAU-U 1501 GUUGA-AAG< gg---aaggg cuugaagu-c a--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- -------gac uugguauuca gug--aucaa 2221 cugucu-(uu cg-)-ggac- ugugca-cu- -cgcu-guu- uacugg-gcc aaca-|ucgg 2281 uuuug-gcgg cgagauaaa- -ugcauugga acguggcucu auc--(uucg -)--gaugga 2341 gugu-uaua- gccuuugua- ---aauaucg ccugcug-gg accgaggacu g--cgc---- 2401 ---------- -----(aucu ----)----- ---------- gcu------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ------agga 2521 uguu-ggc-- ---------- gua-a---ug acuuuaagcc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACGUCUAU GCGAGUGU-u ugggu----( -------gua 2641 aa)------- ---------- ---a-cccg- ---------- --uACGCGUA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ----acguag augaga--ac cc-------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----cuga-- ----)----- ---------- ------gggu --gcaucauc 3061 g--------- ---------- ---------- ---------- -------acc ga-ucc-uga 3121 ug-(u-ucu- -)-cggau-- ggau-uugag u]-------- ---------A AGAGCAUAG- 3181 -CUG-UUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AA|U-AGGGU GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-AUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU CAAAUUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCUGC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-AGAA -GCUc--|-g u|-------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------au 3661 c-aguUUUAU -G|AGG--UA AA-GCGAAUG AUUAGAGGU- -----AUUGG GAUU--(GAA 3721 A-C)--GAUC U-UGA-|CCU AUUC-UCAAA CUUUG-AAUA |UGUAAGaag -uccuuguu- 3781 -acuuaauug aacgugga-c auuag----- ---------- ---------- ---------- 3841 ---------- ---------- ----AAUgaa g|AG-CUUUU -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- AACGUAG--- AGUUAAG--G 3961 U|GCCG-GAA U-G--CA-CG CUCAU-ca-- --------ga caccag---- -AAAAGGUGU 4021 U--AGUUCAU CUAGACA-GC CGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCGGCC -GAAUGAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- CAAGCGUGU| U|-------- --ACCUAU-- --ACUCUAC| (- -----)-gcc cuaac-gAGU AGGC------ 4441 --AGG|-CG- UG-GA-GG-- --------u- -cAG-Uga-- c------GAA GCCU-----U 4501 U-GCA(GUGA -)UGCUGGG- UCG|A-ACG| G--CCUCUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GACUGAAGU G-GGG|AAAG GUU|CCGUGU GA-ACA(-GC AGU)UG|GCC 4681 ACGGGUUAGU |-CGA-UCCU AAGA------ -------<-g augggg(-aa gc)ucc--gu 4741 u---ucaaug --ugcuc--- ---------- ---------- (gauuuuuc) ---------- 4801 --------ga gcc-acca-- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA AGGGA-AU-C CGG(UUAAUA UU-)CCGGA| -AC----uug gauaugg-aa 4981 uc[uuc---- ---------- ---------- ---------- -----acg(- -guaa--)cg 5041 u--------- ---------- ---------- ---------- -----aa-c] uga-aagugg 5101 agac-----g ucg--gcaua ag-c-ccug- -GG-AGGA(G UUAUCUUU-) UCUUCU-|UA 5161 A-cagucu-- ---------- auc|a----C CCUG-AAAUU ----GG(UUU GU-)CCAGAG 5221 CU-AG-GG-- ucuua----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----gggc-u gGA-----AG 5341 AGCCUGACA( --ccuc--)U GUCAGGUC-c ggugcg---c -uuaug--ac gucC-CUUGA 5401 AAA-uccacu -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaagguu-- ---------- ----uuguuu --uc-aug-- cc-aagUCGU 5581 A|CU--CAUA ACC(GCAGCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| AGUUG-||A- 5641 UA-G--AAUA AU-GUAG-GU A-AGGGAAGU CGGCAA-AAU -AGAUCCGUA AC(UUCG)GG 5701 AUAAGGAUU| GGCUCUAAG- ---------- -(-----)---- -------CUU AGAACU|G(- --GUA)CGGA 6601 CAAGGGGAAU C|-UGACUGU CU(AAUUA)A AACAUAGCAU UCCG|A--UG G|UCA(---g 6661 aaag)UGA-- ---------- --U-GUUGAC GGAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU AUCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUUU G---ACA-UU |GUGAAAAGA CAUAGAGGGU 7021 GUAGAAUAAG UGGGAGC--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -UUCG)---- 7141 ---------G C-GCCGGUGA AA-UACCACU |ACCUUUAU- -CGUUU-UUU UACUUAU--- 7201 ------(--- --)------| --a GACAU-UGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAAAGAUA AC-)GCAG-A U|G|U|CCU- AAGGG-GGAC |UCAUG-GAG 7621 -A(ACA---- GAAA)UCUCC AGUAGA|AC( A|A--AAGG) GUAAAAG-UC C-CCUUGAUU 7681 -UUGAUUU(u c--agugu-- )GAAUACAAA CCAU(-GAAA )GUGUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -ucC-CUC(- -AGAA-U--U U---)----- ---------- 7861 -----GAG|G CUAGAG-GUG CC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGUCAAGC G(UUCAU)AG CGACAUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UA C-CGAAG(CA -GA-)AUUCG GUAA-GCGU| UGGAU(UGUU C)ACCCACUA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-A<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->--UGU CA-UC-GC-A AUAGUAAUUG AACU(UAGUA 8281 C(GAGA)GGA AC-)CGUUCA U|UCAGAUAA UUGGUUUUUG CGG|-CUGUC U(GAUC)AGG 8341 CAGUGCCGCG A-AGCUACC- AU-CUGC--U GGAUUAUGGC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCA-U ACUA--g-aa aGCG--AUGA U<-uuuugcc cucgcaca-- -uuuuagaug 8461 gauaagaaua -aggccuugu gccgcugaac cauag----- -----caggc uggcaauggu 8521 gcucuuaac- ggaaag-gu- uuug-ggugc uugccggcgg aucgcaaugu aauua----- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------u gcgcgggga> --|------( ---)------ 8701 ----uaaauc |cuuug(-ca gacga)cu-u aaaug---ua c-a|acggag uauuguaagc 8761 ag-uagagua gc----(cuu -guu------ ---------- ---------- ---------- 8821 ----)----g uuacgauc-u gc-|ugagau u|aag--ccu u--ugu-u-g uc--uga-uu 8881 ugu--|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS C.albica.1 9262 bp RNA RNA 11-JAN-191 DEFINITION Candida albicans subsp. Iowa group. ACCESSION No information KEYWORDS No information. SOURCE Candida albicans subsp. Iowa group. ORGANISM Candida albicans. REFERENCE 1 (bases 1 to 1723) AUTHORS Srikantha,T., Gutell,R.R., Morrow,B. and Soll,D.R. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L28817 BASE COUNT 925 a 686 c 983 g 919 t 5749 others ORIGIN 1 |--------- ---------- ---------- ----AAACUU UCAACAACGG AUC|UCUUGG 61 |UUCUCGC|A U|-CGAUGAA GAA|CGCA(- -GCGA-AA)U |GC-GAUACG UA-auau|[- 121 gaauugcaga uauucgugaa u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---caucg|A AUCUUU-GAA CGC-(acauu )-g-c|gccc 241 ucu------g g(-------- ---------- ---------- -----uauu- ---)cc---- 301 --gg-agg-c ---augccug -u-uu-gagc gucg--(--- ---uuu---/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------cuu )--ugaccuc aaaucagg-u aGG----ACU 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UC AAUAAG-C-G G-AGGAAA-- --AGAAACC( 541 AAC-A)GG-G AU|UGCCUCA GU---AGC(G GCGA)GUG-A A-----GCGG CAAA------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------aauu ugaaaucugg 781 cguc--(uuu ---)---ggc gu-ccgaguu guaauuuga- agaagguauc uuu------- 841 ----gggc-- ---------- ---------- ---------- ---------- cc-gg-cucu 901 uguc-uau-- --g-uuc-c( u-(uggaac- )a)gga-c-- ---------- --------GU 961 --|C(ACA)G |AGGG-(UGA GAAU)-CCCG UG|---cgau gagaugaccc g-----gguc 1021 ugugu----- aaaguucc-- uucgac---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGAGUU GUU(----UG 1141 GGAA)UGCAG CUCUAA---- guGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUC-- ---------- ---------- ---------- )CAU-CUAAA GCU----AAA 1381 UA-------- ---------- UUGGC-GAGA GACCGAUAGC GAAC-AAGUA CA(GUGA)U- 1441 G-GAAAGAUG -AAA-AGAAC UUU(ga-aa- )AGAG-AGUG A-AAAAGUAC G-UGAAAU-U 1501 GUUGA-AAG< gg---aaggg cuugagau-c a--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- -------gac uuggua-uuu ugc--au--g 2221 cugcucu(cu cg-)ggggc- ggc-cg-cu- -gcgg--uu- uaccgg-gcc agca-|ucgg 2281 uuuggagcgg caggauaau- -ggcggagga auguggcacg gc---(uucu -)---gcugu 2341 gugu-uaua- gccucugac- ---gaugcug ccagccu-ag accgaggacu g--cgguu-- 2401 ---------- ---------u uu-------- --------aa ccu------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 agga-ugu-- --------ug gca--uaaug aucuuaaguc >------GCC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACGUCUAU GCGAGUGu-u ugggu----( -------gua 2641 aa)------- ---------- ---a-cccg- ---------- --uaCGCGUA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ----acgaag gugggg--gc cc-------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----auua-- ----)----- ---------- ------gggu --gcaccauc 3061 g--------- ---------- ---------- ---------- -------acc ga-ucc-uga 3121 ug-(--uguu -)-cggau-- ggau-uugag u]-------- ---------A AGAGCAUAG- 3181 -CUG-UUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AA|U-AGGGU GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-GUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU CGAAUUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AA--CGAACC AUCUAGUAGC UGGUUCCUGC CGAAGUUUCC --(CUCA)GG 3421 AUACG-AGAA CGCUc--|-- -|-gua---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------u 3661 c-aguUUUAU -G|AGG--UA AA-GCGAAUG AUUAGAAGU- -----CUUGG GGUU--(gaa 3721 a-u)--GACC U-UAA-|CUU AUUC-UCAAA CUUUA-AAUA |UGUAAGaag -uccuuguu- 3781 -gcuuaauug aacgugga-c aauug----- ---------- ---------- ---------- 3841 ---------- ---------- ----AAUgaa g|AG-CUUUU -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- AACGUGA--- AGUUAAA--G 3961 U|GCCG-GAA U-G--CA-CG CUCAU-ca-- --------ga caccac---- -AAAAGGUGU 4021 U--AGUUCAU CUAGACA-GC CGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCGGCC -GAAUGAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- CAAGCCUGC| U|-------- --ACUUAU-- --ACUUCAC| (- -----)-gcu uucac-gAGU AGGC------ 4441 --AGG|-CG- UG-GA-GG-- --------u- -cag-uga-- c------GAA GCCU-----U 4501 U-GCU(GUAA -)AGCUGGG- UCG|A-ACG| G--CCUCUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GACUGAAGU G-GGG|AAAG GUU|CCAUGU CA-ACA(-GC AU-)UG|GAC 4681 AUGGGUUAGU |-CGA-UCCU AAGA------ -------<-g augggg(-aa gc)ucc--gu 4741 u---ucaacg u-gcuug--- ---------- ---------- (auuuuu--) ---------- 4801 --------ca ggccaacca- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA AGGGA-AU-C CGG(UUAAAA UU-)CCGGA| -AC----uug gauaugg-au 4981 uc[uuc---- ---------- ---------- ---------- -----acg(- -gcaa--)cg 5041 u--------- ---------- ---------- ---------- -----aa-c] uga-augugg 5101 agac-----g ucg--gcgug ag-c-ccug- -GG-AGGA(G UUAUCUUU-) UCUUCU-|UA 5161 A-cagcuu-- ---------- auc|a---cc cugG--AAUU ----GG(UUU AU-)CCGGA- 5221 GA-ug-ggg- ucuua----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----uggc-u gGA-----AG 5341 AGCGCGGUA( --auuu--)U GCCGCGUC-c ggugcg---c -uuacg--ac gguC-CUUGA 5401 AAA-uccaca -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaaggaa-- ---------- ----uaguuu --uc-aug-- cc-aagUCGU 5581 A|CU--CAUA ACC(GCAGCA )GG|UCU-CC AAGGU(UAAC A)GCCUCU-| AGUUG-||A- 5641 UA-G--AAUA AU-GUAG-AU A-AGGGAAGU CGGCAA-AAU -AGAUCCGUA AC(UUCG)GG 5701 AUAAGGAUU| GGCUCUAAG- ---------- -(-----)---- -------CUU AGAACU|G(- --GUA)CGGA 6601 CAAGGGGAAU C|-UGACUGU CU(AAUUA)A AACAUAGCAU UGUG|A--UG G|UCA(---g 6661 aaag)UGA-- ---------- --U-GUUAUC ACAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU AUCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUUU G---ACA-UU |GUGAAAAGC CAUGGAGGGU 7021 GUAGAAUAAG UGGGAGC--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -UUCG)---- 7141 ---------G C-GCCGGUGA AA-UACCACU |ACCUCUAU- -AGUUU-UUU UACUUAu--- 7201 ---------- ---------| --a GACAU-UGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAACGAUA AC-)GCAG-G U|G|U|CCU- AAGGG-GGAC |UCAUG-GAG 7621 -A(ACA---- GAAA)UCUCC AGUAGA|AC( A|A--AAGG) GUAAAAG-UC C-CCUUGAUU 7681 -UUGAUUU(u c--agugu-- )GAAUACAAA CCAU(-GAAA )GUGUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -ucC-CUC(- -GGAA-U--U U---)----- ---------- 7861 -----GAG|G CUAGAG-GUG CC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGUCAAGC G(UUCAU)AG CGACAUUGCU UUUUGAUUCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UA C-CGAAG(CA -GA-)AUUCG GUAA-GCGU| UGGAU(UGUU C)ACCCACUA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA --GGUUAGUU 8101 UUACCCUACU GAUGA-a<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->--uGU UA-UC-GC-A AUAGUAAUUG AACU(UAGUA 8281 C(GAGA)GGA AC-)CGUUCA U|UCAGAUAA UUGGUUUUUG CGG|-CUGUC U(GAUC)AGG 8341 CAA--cc-CG A-AGCUACC- AU-CUGC--U GGAUUAUGGC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCA-U GCUA--g-aa cGCG--AUGA U<--uuuug- ccugcaca-- -uuuuagaug 8461 gauacgaa-- --uaag(acu u-)uuugauc gcuggaccau agcaggcugg caacg--ugg 8521 -cuuacggc- ggaaag-gc- cuug-ggugc uugcuggc-g aa-uugcaau gucauuu--- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------u gcgugggga> --|------( ---)------ 8701 ----uaaauc |auuug(-ua uacga)cu-u agaug---ua c-a|acgggg uauuguaagc 8761 gg-uagagua gc----(cuu -guu------ ---------- ---------- ---------- 8821 ----)----g uuacgauc-u gc-|ugagau u|aag--ccu u--ugu-u-g uc--uga-uu 8881 ugu--|---- ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS C.albica.2 9262 bp RNA RNA 11-JAN-191 DEFINITION Candida albicans. ACCESSION No information KEYWORDS No information. SOURCE Candida albicans. ORGANISM Candida albicans. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X70659,X71088 ID CA25S standard; DNA; FUN; 3443 BP. XX AC X70659; XX DT 14-MAR-1993 (Rel. 35, Created) DT 14-MAR-1993 (Rel. 35, Last updated, Version 2) XX DE C.albicans 25S rRNA XX KW 25S ribosomal RNA; ribosomal RNA. XX OS Candida albicans OC Eukaryota; Plantae; Thallobionta; Basidiomycotina; Deuteromycotina. XX RN [1] RP 1-3443 RA Lemay G.; RT ; RL Submitted (21-JAN-1993) on tape to the EMBL Data Library by: RL G. Lemay, Universite de Montreal, Dept de RL Microbiologie-Immunologie, 2900 boul. Edouard-Montpetit, C.P. 6128, RL Succ. A, Montreal, Quebec, H3C 3J7, CANADA XX RN [2] RP 1-3443 RA Mercure S., Rougeau N., Montplaisir S., Lemay G.; RT "The nucleotide sequence of the 25S rRNA-encoding gene from RT Candida albicans"; RL Nucleic Acids Res. 21:1490-1490(1993). XX CC *source: stage=Yeast phase; CC *source: clone_library=pBR62C; CC *source: clone=pBS62b1, pBS62b2; CC *source: isolate=patient 62-1; XX CC The sequence shows 91% homology with the Saccharomyces cerevisiae CC 25S CC rRNA gene XX FH Key Location/Qualifiers FH FT rRNA 41..3402 FT /product="25S ribosomal RNA" XX SQ Sequence 3443 BP; 912 A; 671 C; 965 G; 895 T; 0 other; BASE COUNT 931 a 690 c 986 g 915 t 5740 others ORIGIN 1 |--------- ---------- ---------- ----AAACUU UCAACAACGG AUC|UCUUGG 61 |UUCUCGC|A U|-CGAUGAA GAA|cgca(- -gcga-aa)u |gc-gauacg ua-auau|[- 121 gaauugcaga uauucgugaa u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---caucg|A AUCUUU-GAA CGC-(acauu )-g-c|gccc 241 ucu------g g(-------- ---------- ---------- -----uauu- ---)cc---- 301 --gg-agggc ---augccug -u-uu-gagc gucg--(--- ---uuu---/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------cuu )--ugaccuc aaaucagg-u aGG----ACU 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UC AAUAAG-C-G G-AGGAAA-- --AGAAACC( 541 AAC-A)GG-G AU|UGCCUCA GU---AGC(G GCGA)GUG-A A-----GCGG CAAA------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------aauu ugaaaucugg 781 cguc--(uuu ---)---ggc gu-ccgaguu guaauuuga- agaagguauc uuu------- 841 ----gggc-- ---------- ---------- ---------- ---------- cc-gg-cucu 901 uguc-uau-- --g-uuc-c( u-(uggaac- )a)gga-c-- ---------- --------GU 961 --|C(ACA)G |AGGG-(UGA GAAU)-CCCG UG|---cgau gagaugaccc g-----gguc 1021 ugugu----- aaaguucc-- uuugac---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGAGUU GUU(----UG 1141 GGAA)UGCAG CUCUAA---- guGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUC-- ---------- ---------- ---------- )CAU-CUAAA GCU----AAA 1381 UA-------- ---------- UUGGC-GAGA GACCGAUAGC GAAC-AAGUA CA(GUGA)U- 1441 G-GAAAGAUG -AAA-AGAAC UUU(ga-aa- )AGAG-AGUG A-AAAAGUAC G-UGAAAU-U 1501 GUUGA-AAG< gg---aaggg cuugagau-c a--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- -------gac uuggua-uuu ugc--au--g 2221 cugcucu(cu c--)ggggc- ggc-cg-cu- -gcgg--uu- uaccgg-gcc agca-|ucgg 2281 uuuggagcgg caggauaau- -ggcggagga auguggcacg gc---(uucu -)---gcugu 2341 gugu-uaua- gccucugac- ---gauacug ccagccu-ag accgaggacu g--cgguu-- 2401 ---------- ---------u uuu------- --------ua ccu------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 agga-ugu-- --------ug gca--uaaug aucuuaaguc >------GCC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACGUCUAU GCGAGUGu-u ugggu----( -------gua 2641 aa)------- ---------- ---a-ccca- ---------- --uaCGCGUA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ----acguag guuggg--gc cuc------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----gcaa-- ----)----- ---------- -----gaggu --gcacaauc 3061 g--------- ---------- ---------- ---------- -------acc ga-ucc-uga 3121 ug-(--uguu -)-cggau-- ggau-uugag u]-------- ---------A AGAGCAUAG- 3181 -CUG-UUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AA|U-AGGGU GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-GUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU CGAAUUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCUGC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-AGAA -GCUc--|-- -|-gua---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------u 3661 c-aguUUUAU -G|AGG--UA AA-GCGAAUG AUUAGAAGU- -----CUUGG GGUU--(gaa 3721 a-u)--GACC U-UAA-|CUU AUUC-UCAAA CUUUA-AAUA |UGUAAGaag -uccuuguu- 3781 -gcuuaauug aacgugga-c aauug----- ---------- ---------- ---------- 3841 ---------- ---------- ----AAUgaa g|AG-CUUUU -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- AACGUGA--- AGUUAAA--G 3961 U|GCCG-GAA U-G--CA-CG CUCAU-ca-- --------ga caccac---- -AAAAGGUGU 4021 U--AGUUCAU CUAGACA-GC CGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCGGCC -GAAUGAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- CAAGCGUGC| U|-------- --ACUUAU-- --ACUUCAC| (- -----)-gcu uucac-gAGU AGGC------ 4441 --AGG|-CG- UG-GA-GG-- --------u- -cag-uga-- c------GAA GCCU-----U 4501 U-GCU(GUAA -)AGCUGGG- UCG|A-ACG| G--CCUCUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GACUGAAGU G-GGG|AAAG GUU|CCAUGU CA-ACA(-GC AGU)UG|GAC 4681 AUGGGUUAGU |-CGA-UCCU AAGA------ -------<-g augggg(-aa gc)ucc--gu 4741 u---ucaacg u-gcuug--- ---------- ---------- (auuuuu--) ---------- 4801 --------ca ggccagcca- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA AGGGA-AU-C CGG(UUAAAA UU-)CCGGA| -AC----uug gauaugg-au 4981 uc[uuc---- ---------- ---------- ---------- -----acg(- -gcaa--)cg 5041 u--------- ---------- ---------- ---------- -----aa-c] uga-augugg 5101 agac-----g ucg--gcgug ag-c-ccug- -GG-AGGA(G UUAUCUUU-) UCUUCU-|UA 5161 A-cagcuu-- ---------- auc|a---cc cugG--AAUU ----GG(UUU AU-)CCGGA- 5221 GA-ug-ggg- ucuua----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----gggc-u gGA-----AG 5341 AGCGCGGUA( --auuu--)U GCCGCGUC-c ggugcg---c -uuacg--ac gguC-CUUGA 5401 AAA-uccaca -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaaggaa-- ---------- ----uaguuu --uc-aug-- cc-aagUCGU 5581 A|CU--CAUA ACC(GCAGCA )GG|UCU-CC AAGGU(UAAC A)GCCUCU-| AGUUG-||A- 5641 UA-G--AAUA AU-GUAG-AU A-AGGGAAGU CGGCAA-AAU -AGAUCCGUA AC(UUCG)GG 5701 AUAAGGAUU| GGCUCUAAG- ---------- -(-----)---- -------CUU AGAACU|G(- --GUA)CGGA 6601 CAAGGGGAAU C|-UGACUGU CU(AAUUA)A AACAUAGCAU UGUG|A--UG G|UCA(---g 6661 aaag)UGA-- ---------- --U-GUUGAC ACAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU AUCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUUU G---ACA-UU |GUGAAAAGA CAUGGAGGGU 7021 GUAGAAUAAG UGGGAGC--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -UUCG)---- 7141 ---------G C-GCCGGUGA AA-UACCACU |ACCUCUAU- -AGUUU-UUU UACUUAu--- 7201 ---------- ---------| --a GACAU-UGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAACGAUA AC-)GCAG-G U|G|U|CCU- AAGGG-GGAC |UCAUG-GAG 7621 -A(ACA---- GAAA)UCUCC AGUAGA|AC( A|A--AAGG) GUAAAAG-UC C-CCUUGAUU 7681 -UUGAUUU(u c--agugu-- )GAAUACAAA CCAU(-GAAA )GUGUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -ucC-CUC(- -GGAA-U--U U---)----- ---------- 7861 -----GAG|G CUAGAG-GUG CC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGUCAAGC G(UUCAU)AG CGACAUUGCU UUUUGAUUCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UA C-CGAAG(CA -GA-)AUUCG GUAA-GCGU| UGGAU(UGUU C)ACCCACUA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-a<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->--uGU UA-UC-GC-A AUAGUAAUUG AACU(UAGUA 8281 C(GAGA)GGA AC-)CGUUCA U|UCAGAUAA UUGGUUUUUG CGG|-CUGUC U(GAUC)AGG 8341 CAACGCG-CG A-AGCUACC- AU-CUGC--U GGAUUAUGGC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCA-U GCUA--g-aa cGCG--AUGA U<--uuuugc ccugcaca-- -uuuuagaug 8461 gauacgaa-- --uaag(acu u-)uuuaguc gcuggaccau agcaggcugg caacg--gug 8521 -cgcuuagc- ggaaag-gc- uuug-ugcgc uugccggc-g ga-uagcaau gucaaca--- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------u gcgcgggga> --|------( ---)------ 8701 ----uaaauc |cuuug(-ca uacga)cu-u agaug---ua c-a|acggag uauuguaagc 8761 ag-uagagua gc----(cuu -guu------ ---------- ---------- ---------- 8821 ----)----g uuacgauc-u gc-|ugagau u|aag--cuc u--ugu-u-g uc--uga-uu 8881 ugu--|---- ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS S.cerevi.1 9262 bp RNA RNA 30-JAN-1980 DEFINITION Saccharomyces cerevisiae 5.8S + 25S. ACCESSION No information KEYWORDS No information. SOURCE Saccharomyces cerevisiae 5.8S + 25S. ORGANISM Saccharomyces cerevisiae 5.8S + 25S. REFERENCE 1 (bases 1 to 1723) AUTHORS No information JOURNAL S.cerevisiae:who:published STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: K01048,J01355 Phylo:Eukaryotes,Fungi,yeast BASE COUNT 941 a 696 c 1001 g 912 t 5712 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AAACUU UCAACAACGG AUC|UCUUGG 61 |UUCUCGC|A U|-CGAUGAA GAA|CGCA(- -GCGA-AA)U |GC-GAUACG UAaugu-|[- 121 gaauugcaga auuccgugaa u--------- ---------- ---------- -------]-- 181 ---(------ -)-------- ---caucg|A AUCUUU-GAA Cgc-(acauu )-g-c|gccc 241 cuu------g g(-------- ---------- ---------- -----uauu- ---)cc---- 301 --ag-ggggc ---augccug -u-uu-gagc guca--(--- ---uuu---/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------guu )--ugaccuc aaaucagg-u aGG----AGU 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UC AAUAAG-C-G G-AGGAAA-- --AGAAACC( 541 AAC-C)GG-- AU|UGCCUUA GU---AAC(G GCGA)GUG-A A-----GCGG CAAA------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------aauu ugaaaucugg 781 uacc-(-uuc ----)--ggu gc-ccgaguu guaauuugg- agagg-gcaa cuuu------ 841 ----gggg-- ---------- ---------- ---------- ---------- cc-gu-uccu 901 uguc-uau-- --g-uuc-c( u-(uggaac- )a)gga-c-- ---------- --------GU 961 --|C(AUA)G |AGGG-(UGA GCAU)-CCCG UG|--u-ggc gaggagug-c g-----guuc 1021 u--uugu--- aaagugcc-- uucgaa---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGAGUU GUU(----UG 1141 GGAA)UGCAG CUCUAA---- guGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUC-- ---------- ---------- ---------- )CAU-CUAAA GCU----AAA 1381 UA-------- ---------- UUGGC-GAGA GACCGAUAGC GAAC-AAGUA CA(GUGA)U- 1441 G-GAAAGAUG -AAA-AGAAC UUU(ga-aa- )AGAG-AGUG A-AAAAGUAC G-UGAAAU-U 1501 GUUGA-AAG< gg---aaggg cauuugau-c a--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- -------gac augguguuuu gug---cc-c 2221 ucugcuc(cu ugu)gggua- ggggaaucu- -cgca-uuu- cacugg-gcc agca-|ucag 2281 uuuug-gugg caggauaaa- -uccauagga auguagcuug c----(cucg -)----guaa 2341 guau-uaua- gccuguggg- ---aauacug ccagcug-gg acugaggacu g--cgac--- 2401 ---------- -----(guaa ----)----- ---------g uca------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ------agga 2521 ugcu-ggc-- ---------- aua-a---ug guuauaugcc >------GCC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACGUCUAU GCGAGUGu-u ugggu----( -------gua 2641 aa)------- ---------- ---a-ccca- ---------- --uaCGCGUA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ----acguag guuggg--gc cuc------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----gcaa-- ----)----- ---------- -----gaggu --gcacaauc 3061 g--------- ---------- ---------- ---------- -------acc ga-ucc-uga 3121 ug-(u-cuu- -)-cggau-- ggau-uugag u]-------- ---------A AGAGCAUAG- 3181 -CUG-UUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AA|U-AGGGU GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-GUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU CGAAUUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCUGC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-AGAA -GCUc--|-g u|-------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------au 3661 c-aguUUUAU -G|AGG--UA AA-GCGAAUG AUUAGAGGU- -----UCCGG GGUC--(GAA 3721 A-U)--GACC U-UGA-|CCU AUUC-UCAAA CUUUA-AAUA |UGUAAGaag -uccuuguu- 3781 -acuuaauug aacgugga-c auuug----- ---------- ---------- ---------- 3841 ---------- ---------- ----AAUgaa g|AG-CUUUU -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- AACGUAG--- AGUUAAG--G 3961 U|GCCG-GAA U-A--CA-CG CUCAU-ca-- --------ga caccac---- -AAAAGGUGU 4021 U--AGUUCAU CUAGACA-GC CGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCGGCC -GAAUGAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- CAAGCGUGU| U|-------- --ACCUAU-- --ACUCUAC| (- -----)-gcc cugac-gAGU AGGC------ 4441 --AGG|-CG- UG-GA-GG-- --------u- -cAG-Uga-- c------GAA GCCU-----A 4501 G-ACC(GUAA -)GGUCGGG- UCG|A-ACG| G--CCUCUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GACUGAAGU G-GGG|AAAG GUU|CCACGU CA-ACA(-GC AGU)UG|GAC 4681 GUGGGUUAGU |-CGA-UCCU AAGA------ -------<-g augggg(-aa gc)ucc--gu 4741 u---ucaaag --gccug--- ---------- ---------- (auuuuaug) ---------- 4801 --------ca ggccacca-- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA AGGGA-AU-C CGG(U-AAGA UU-)CCGGA| -AC----uug gauaugg-au 4981 uc[uuc---- ---------- ---------- ---------- -----acg(- -guaa--)cg 5041 u--------- ---------- ---------- ---------- -----aa-c] uga-augugg 5101 agac-----g ucg--gcgcg ag-c-ccug- -GG-AGGA(G UUAUCUUU-) UCUUCU-|UA 5161 A-cagcuu-- ---------- auc|a----C CCCG-GAAUU ----GG(UUU AU-)CCGGAG 5221 AU-GG-GG-- ucuua----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----uggc-u gGA-----AG 5341 AGGCCAGCA( --ccuu--)U GCUGGCUC-c ggugcg---c -uugug--ac ggcC-CGUGA 5401 AAA-uccaca -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaaggaa-- ---------- ----uaguuu --uc-aug-- cu-aggUCGU 5581 A|CU--GAUA ACC(GCAGCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| AGUUG-||A- 5641 UA-G--AAUA AU-GUAG-AU A-AGGGAAGU CGGCAA-AAU -AGAUCCGUA AC(UUCG)GG 5701 AUAAGGAUU| GGCUCUAAG- ---------- -(-----)---- -------CUU AGAACU|G(- --GUA)CGGA 6601 CAAGGGGAAU C|-UGACUGU CU(AAUUA)A AACAUAGCAU UGCG|A--UG G|UCA(---g 6661 aaag)UGA-- ---------- --U-GUUGAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----CCAAGC G|CGAGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU AUCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUUU G---ACA-UU |GUGAAGAGA CAUAGAGGGU 7021 GUAGAAUAAG UGGGAGC--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -UUCG)---- 7141 ---------G C-GCCAGUGA AA-UACCACU |ACCUUUAU- -AGUUU-CUU UACUUAu--- 7201 ------(--- --)------| --a GACAU-UGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAACGAUA AC-)GCAG-A U|G|U|CCU- AAGGG-GGGC |UCAUG-GAG 7621 -A(ACA---- GAAA)UCUCC AGUAGA|AC( A|A--AAGG) GUAA-AG-CC C-C-UUAG-U 7681 -UUGAUUU(- c--agugu-- )GAAUACAAA CCAU(uGAAA )GUGUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -ucC-CUC(- -GGAA-U--U U---)----- ---------- 7861 -----GAG|G CUAGAG-GUG CC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGUCAAGC G(UUCAU)AG CGACAUUGCU UUUUGAUUCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UA C-CGAAG(CA -GA-)AUUCG GUAA-GCGU| UGGAU(UGUU C)ACCCACUA 8041 AUAGGGAACA UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-A<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->--uGU UA-CCaGC-A AUAGUAAUUG AACU(UAGUA 8281 C(GAGA)GGA AC-)AGUUCA U|UCGGAUAA UUGGUUUUUG CGG|-CUGUC U(GAUC)AGG 8341 CAUUGCCGCG A-AGC-ACC- AU-CCGC--U GGAUUAUGGC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCA-U GCUA--g-aa cGCG--GUGA U --|------( ---)------ 8701 ----uaaauc |auuug(-ua uacga)cu-u agaug---ua c-a|acgggg uauuguaagc 8761 gg-uagagua gc----(cuu -guu------ ---------- ---------- ---------- 8821 ----)----g uuacgauc-u gc-|ugagau u|aag--ccu u--ugu-u-g uc--uga-uu 8881 ugu--|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS S.cerevi.2 9262 bp RNA RNA 03-JUL-1996 DEFINITION Saccharomyces cerevisiae.; . ACCESSION U53879 KEYWORDS . SOURCE Saccharomyces cerevisiae. ORGANISM Saccharomyces cerevisiae. REFERENCE 1 (bases 1 to 39322) AUTHORS Fulton,L. TITLE The sequence of S. cerevisiae cosmid 9634 JOURNAL Unpublished (1996) STANDARD No information REFERENCE 2 (bases 1 to 39322) AUTHORS Johnston,M., Andrews,S., Brinkman,R., Cooper,J., Ding,H., Du,Z., Favello,A., Fulton,L., Gattung,S., Greco,T., Kirsten, J., Kucaba,T., Hallsworth,K., Hawkins,J., Hillier,L., Jier, M., Johnson,D., Johnston,L., Langston,Y., Latreille,P., Le, T., Mardis,E., Menezes,S., Miller,N., Nhan,M., Pauley,A., Peluso,D., Rifken,L., Riles,L., Taich,A., Trevaskis,E., Vignati,D., Wilcox,L., Wohldman,P., Vaudin,M., Wilson,R. and Waterston,R. TITLE The complete sequence of Saccharomyces cerevisiae chromosome XII JOURNAL Unpublished (1996) STANDARD No information REFERENCE 3 (bases 1 to 39322) AUTHORS Waterston,R. TITLE Direct Submission JOURNAL Submitted (08-APR-1996) STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U53879 Submitted by: Genome Sequencing Center Department of Genetics, Washington University, St. Louis, MO 63110, USA e-mail: mj@sequencer.wustl.edu NEIGHBORING COSMID INFORMATION: This sequence includes nucleotides 1-30947 of cosmid 9634, which includes one complete copy of the rDNA repeat, plus a nearly complete additional copy of the rDNA repeat. This sequence overlaps with the cosmid on the right (9362, GenBank accession number U51921) by 119 nucleotides. Note that this overlap is entirely within a nearly complete copy of 5S rDNA that is also present in several 3.6 kb repeats immediately to the right of the rDNA repeats (within cosmid 9362). Thus, this cosmid (9634) ends with a nearly complete 5S rDNA (in the 2nd rDNA repeat); the adjacent cosmid on the right (9362) begins with a 5S rDNA (in its first 3.6 kb repeat). BASE COUNT 940 a 698 c 1003 g 913 t 5708 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AAACUU UCAACAACGG AUC|UCUUGG 61 |UUCUCGC|A U|-CGAUGAA GAA|CGCA(- -GCGA-AA)U |GC-GAUACG UAaugu-|[- 121 gaauugcaga auuccgugaa u--------- ---------- ---------- -------]-- 181 ---(------ -)-------- ---caucg|A AUCUUU-GAA Cgc-(acauu )-g-c|gccc 241 cuu------g g(-------- ---------- ---------- -----uauu- ---)cc---- 301 --ag-ggggc ---augccug -u-uu-gagc guca--(--- ---uuu---/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------guu )--ugaccuc aaaucagg-u aGG----AGU 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UC AAUAAG-C-G G-AGGAAA-- --AGAAACC( 541 AAC-C)GG-G AU|UGCCUUA GU---AAC(G GCGA)GUG-A A-----GCGG CAAA------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------aauu ugaaaucugg 781 uacc-(-uuc ----)--ggu gc-ccgaguu guaauuugg- agagg-gcaa cuuu------ 841 ----gggg-- ---------- ---------- ---------- ---------- cc-gu-uccu 901 uguc-uau-- --g-uuc-c( u-(uggaac- )a)gga-c-- ---------- --------GU 961 --|C(AUA)G |AGGG-(UGA GAAU)-CCCG UG|--u-ggc gaggagug-c g-----guuc 1021 u--uugu--- aaagugcc-- uucgaa---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGAGUU GUU(----UG 1141 GGAA)UGCAG CUCUAA---- guGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUC-- ---------- ---------- ---------- )CAU-CUAAA GCU----AAA 1381 UA-------- ---------- UUGGC-GAGA GACCGAUAGC GAAC-AAGUA CA(GUGA)U- 1441 G-GAAAGAUG -AAA-AGAAC UUU(ga-aa- )AGAG-AGUG A-AAAAGUAC G-UGAAAU-U 1501 GUUGA-AAG< gg---aaggg cauuugau-c a--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- -------gac augguguuuu gug---cc-c 2221 ucugcuc(cu ugu)gggua- ggggaaucu- -cgca-uuu- cacugg-gcc agca-|ucag 2281 uuuug-gugg caggauaaa- -uccauagga auguagcuug c----(cucg -)----guaa 2341 guau-uaua- gccuguggg- ---aauacug ccagcug-gg acugaggacu g--cgac--- 2401 ---------- -----(guaa ----)----- ---------g uca------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ------agga 2521 ugcu-ggc-- ---------- auaa----ug guuauaugcc >------GCC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACGUCUAU GCGAGUGu-u ugggu----( -------gua 2641 aa)------- ---------- ---a-ccca- ---------- --uaCGCGUA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ----acguag guuggg--gc cuc------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----gcaa-- ----)----- ---------- -----gaggu --gcacaauc 3061 g--------- ---------- ---------- ---------- -------acc ga-ucc-uga 3121 ug-(u-cuu- -)-cggau-- ggau-uugag u]-------- ---------A AGAGCAUAG- 3181 -CUG-UUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AA|U-AGGGU GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-GUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU CGAAUUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCUGC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-AGAA -GCUc--|-g u|-------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------au 3661 c-aguUUUAU -G|AGG--UA AA-GCGAAUG AUUAGAGGU- -----UCCGG GGUC--(GAA 3721 A-U)--GACC U-UGA-|CCU AUUC-UCAAA CUUUA-AAUA |UGUAAGaag -uccuuguu- 3781 -acuuaauug aacgugga-c auuug----- ---------- ---------- ---------- 3841 ---------- ---------- ----AAUgaa g|AG-CUUUU -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- AACGUAG--- AGUUAAG--G 3961 U|GCCG-GAA U-A--CA-CG CUCAU-ca-- --------ga caccac---- -AAAAGGUGU 4021 U--AGUUCAU CUAGACA-GC CGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCGGCC -GAAUGAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- CAAGCGUGU| U|-------- --ACCUAU-- --ACUCUAC| (- -----)-gcc cugac-gAGU AGGC------ 4441 --AGG|-CG- UG-GA-GG-- --------u- -cAG-Uga-- c------GAA GCCU-----A 4501 G-ACC(GUAA -)GGUCGGG- UCG|A-ACG| G--CCUCUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GACUGAAGU G-GGG|AAAG GUU|CCACGU CA-ACA(-GC AGU)UG|GAC 4681 GUGGGUUAGU |-CGA-UCCU AAGA------ -------<-g augggg(-aa gc)ucc--gu 4741 u---ucaaag --gccug--- ---------- ---------- (auuuuaug) ---------- 4801 --------ca ggccacca-- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA AGGGA-AU-C CGG(UUAAGA UU-)CCGGA| -AC----cug gauaugg-au 4981 uc[uuc---- ---------- ---------- ---------- -----acg(- -guaa--)cg 5041 u--------- ---------- ---------- ---------- -----aa-c] uga-augugg 5101 agac-----g ucg--gcgcg ag-c-ccug- -GG-AGGA(G UUAUCUUU-) UCUUCU-|UA 5161 A-cagcuu-- ---------- auc|a----C CCCG-GAAUU ----GG(UUU AU-)CCGGAG 5221 AU-GG-GG-- ucuua----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----uggc-u gGA-----AG 5341 AGGCCAGCA( --ccuu--)U GCUGGCUC-c ggugcg---c -uugug--ac ggcC-CGUGA 5401 AAA-uccaca -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaaggaa-- ---------- ----uaguuu --uc-aug-- cc-aggUCGU 5581 A|CU--GAUA ACC(GCAGCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| AGUUG-||A- 5641 UA-G--AAUA AU-GUAG-AU A-AGGGAAGU CGGCAA-AAU -AGAUCCGUA AC(UUCG)GG 5701 AUAAGGAUU| GGCUCUAAG- ---------- -(-----)---- -------CUU AGAACU|G(- --GUA)CGGA 6601 CAAGGGGAAU C|-UGACUGU CU(AAUUA)A AACAUAGCAU UGCG|A--UG G|UCA(---g 6661 aaag)UGA-- ---------- --U-GUUGAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU AUCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUUU G---ACA-UU |GUGAAGAGA CAUAGAGGGU 7021 GUAGAAUAAG UGGGAGC--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -UUCG)---- 7141 ---------G C-GCCAGUGA AA-UACCACU |ACCUUUAU- -AGUUU-CUU UACUUAu--- 7201 ------(--- --)------| --a GACAU-UGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAACGAUA AC-)GCAG-A U|G|U|CCU- AAGGG-GGGC |UCAUG-GAG 7621 -A(ACA---- GAAA)UCUCC AGUAGA|AC( A|A--AAGG) GUAAAAG-CC C-CCUUGAUU 7681 -UUGAUUU(u c--agugu-- )GAAUACAAA CCAU(-GAAA )GUGUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -ucC-CUC(- -GGAA-U--U U---)----- ---------- 7861 -----GAG|G CUAGAG-GUG CC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGUCAAGC G(UUCAU)AG CGACAUUGCU UUUUGAUUCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UA C-CGAAG(CA -GA-)AUUCG GUAA-GCGU| UGGAU(UGUU C)ACCCACUA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-A<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->--uGU UA-CC-GC-A AUAGUAAUUG AACU(UAGUA 8281 C(GAGA)GGA AC-)AGUUCA U|UCGGAUAA UUGGUUUUUG CGG|-CUGUC U(GAUC)AGG 8341 CAUUGCCGCG A-AGCUACC- AU-CCGC--U GGAUUAUGGC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCA-U GCUA--g-aa cGCG--GUGA U --|------( ---)------ 8701 ----uaaauc |auuug(-ua uacga)cu-u agaug---ua c-a|acgggg uauuguaagc 8761 ag-uagagua gc----(cuu -guu------ ---------- ---------- ---------- 8821 ----)----g uuacgauc-u gc-|ugagau u|aag--ccu u--ugu-u-g uc--uga-uu 8881 ugu--|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS S.cerevi.3 9262 bp RNA RNA 24-JUL-1997 DEFINITION Saccharomyces cerevisiae.; 25S ribosomal RNA; ribosome inactivating protein. 5 of 5. ACCESSION J01355 KEYWORDS 25S ribosomal RNA; ribosome inactivating protein. 5 of 5. SOURCE Saccharomyces cerevisiae. ORGANISM Saccharomyces cerevisiae. REFERENCE 1 (bases 1 to 243; 3364 to 3911) AUTHORS Bayev,A., Georgiev,O.I., Hadjiolov,A.A., Nikolaev,N., Skryabin ,K.G. and Zakharyev,V.M. TITLE adjacent regions The structure of the yeast ribosomal RNA genes. 3. Precise mapping of the 18 S and 25 S rRNA genes and structure of the JOURNAL Nucleic Acids Res. 9 (4), 789-799 (1981) STANDARD No information REFERENCE 2 (bases 114 to 3505) AUTHORS Georgiev,O.I., Nikolaev,N., Hadjiolov,A.A., Skryabin,K.G., Zakharyev,V.M. and Bayev,A.A. TITLE The structure of the yeast ribosomal RNA genes. 4. Complete sequence of the 25 S rRNA gene from Saccharomyces cerevisiae JOURNAL Nucleic Acids Res. 9 (24), 6953-6958 (1981) STANDARD No information REFERENCE 3 (bases 1 to 3911) AUTHORS Swanson,M.E. and Holland,M.J. TITLE RNA polymerase I-dependent selective transcription of yeast ribosomal DNA. Identification of a new cellular ribosomal RNA precursor JOURNAL J. Biol. Chem. 258 (5), 3242-3250 (1983) STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: J01355 BASE COUNT 900 a 660 c 964 g 868 t 5870 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~(~~~~~~ ~)~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~guu )--ugaccuc aaaucagg-u aGG----AGU 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UC AAUAAG-C-G G-AGGAAA-- --AGAAACC( 541 AAC-C)GG-- AU|UGCCUUA GU---AAC(G GCGA)GUG-A A-----GCGG CAAA------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------aauu ugaaaucugg 781 uacc-(-uuc ----)--ggu gc-ccgaguu guaauuugg- agagg-gcaa cuuu------ 841 ----gggg-- ---------- ---------- ---------- ---------- cc-gu-uccu 901 uguc-uau-- --g-uuc-c( u-(uggaac- )a)gga-c-- ---------- --------GU 961 --|C(AUA)G |AGGG-(UGA GCAU)-CCCG UG|--u-ggc gaggagug-c g-----guuc 1021 u--uugu--- aaagugcc-- uucgaa---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGAGUU GUU(----UG 1141 GGAA)UGCAG CUCUAA---- GUGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUC-- ---------- ---------- ---------- )CAU-cuAAA GCU----AAA 1381 UA-------- ---------- UUGGC-GAGA GACCGAUAGC GAAC-AAGUA CA(GUGA)U- 1441 G-GAAAGAUG -AAA-AGAAC UUU(ga-aa- )AGAG-AGUG A-AAAAGUAC G-UGAAAU-U 1501 GUUGA-AAG< gg---aaggg cauuugau-c a--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- -------gac augguguuuu gug---cc-c 2221 ucugcuc(cu ugu)gggua- ggggaaucu- -cgca-uuu- cacugg-gcc agca-|ucag 2281 uuuug-gugg caggauaaa- -uccauagga auguagcuug c----(cucg -)----guaa 2341 guau-uaua- gccuguggg- ---aauacug ccagcug-gg acugaggacu g--cgac--- 2401 ---------- -----(guaa ----)----- ---------g uca------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ------agga 2521 ugcu-ggc-- ---------- aua-a---ug guuauaugcc >------GCC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACGUCUAU GCGAGUGU-u ugggu----( -------gua 2641 aa)------- ---------- ---a-ccca- ---------- --uACGCGUA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ----acguag guuggg--gc cuc------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----gcaa-- ----)----- ---------- -----gaggu --gcacaauc 3061 g--------- ---------- ---------- ---------- -------acc ga-ucc-uga 3121 ug-(u-cuu- -)-cggau-- ggau-uugag u]-------- ---------A AGAGCAUAG- 3181 -CUG-UUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AA|U-AGGGU GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-GUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU CGAAUUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCUGC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-AGAA -GCUc--|-g u|-------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------au 3661 c-aguUUUAU -G|AGG--UA AA-GCGAAUG AUUAGAGGU- -----UCCGG GGUC--(GAA 3721 A-U)--GACC U-UGA-|CCU AUUC-UCAAA CUUUA-AAUA |UGUAAGaag -uccuuguu- 3781 -acuuaauug aacgugga-c auuug----- ---------- ---------- ---------- 3841 ---------- ---------- ----aaugaa g|AG-CUUUU -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- AACGUAG--- AGUUAAG--G 3961 U|GCCG-GAA U-A--CA-CG CUCAU-ca-- --------ga caccac---- -AAAAGGUGU 4021 U--AGUUCAU CUAGACA-GC CGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCGGCC -GAAUGAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- CAAGCGUGU| U|-------- --ACCUAU-- --ACUCUAC| (- -----)-gcc cugac-gAGU AGGC------ 4441 --AGG|-CG- UG-GA-GG-- --------u- -cag-uga-- c------GAA GCCU-----A 4501 G-ACC(GUAA -)GGUCGGG- UCG|A-ACG| G--CCUCUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GACUGAAGU G-GGG|AAAG GUU|CCACGU CA-ACA(-GC AGU)UG|GAC 4681 GUGGGUUAGU |-CGA-UCCU AAGA------ -------<-g augggg(-aa gc)ucc--gu 4741 u---ucaaag --gccug--- ---------- ---------- (auuuuaug) ---------- 4801 --------ca ggccacca-- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA AGGGA-AU-C CGG(U-AAGA UU-)CCGGA| -AC----uug gauaugg-au 4981 uc[uuc---- ---------- ---------- ---------- -----acg(- -guaa--)cg 5041 u--------- ---------- ---------- ---------- -----aa-c] uga-augugg 5101 agac-----g ucg--gcgcg ag-c-ccug- -GG-AGGA(G UUAUCUUU-) UCUUCU-|UA 5161 A-cagcuu-- ---------- auc|a----C CCCG-GAAUU ----GG(UUU AU-)CCGGAG 5221 AU-GG-GG-- ucuua----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----uggc-u gGA-----AG 5341 AGGCCAGCA( --ccuu--)U GCUGGCUC-c ggugcg---c -uugug--ac ggcC-CGUGA 5401 AAA-uccaca -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaaggaa-- ---------- ----uaguuu --uc-aug-- cu-agGUCGU 5581 A|CU--GAUA ACC(GCAGCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| AGUUG-||A- 5641 UA-G--AAUA AU-GUAG-AU A-AGGGAAGU CGGCAA-AAU -AGAUCCGUA AC(UUCG)GG 5701 AUAAGGAUU| GGCUCUAAG- ---------- -(-----)---- -------CUU AGAACU|G(- --GUA)CGGA 6601 CAAGGGGAAU C|-UGACUGU CU(AAUUA)A AACAUAGCAU UGCG|A--UG G|UCA(---g 6661 aaag)UGA-- ---------- --U-GUUGAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCuG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----CCAAGC G|CGAGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU AUCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUUU G---ACA-UU |GUGAAGAGA CAUAGAGGGU 7021 GUAGAAUAAG UGGGAGC--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -UUCG)---- 7141 ---------G C-GCCAGUGA AA-UAccaCU |ACCUUUAU- -AGUUU-CUU UACUUAU--- 7201 ------(--- --)------| --a GACAU-UGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAACGAUA AC-)GCAG-A U|G|U|CCU- AAGGG-GGGC |UCAUG-GAG 7621 -A(ACA---- GAAA)UCUCC AGUAGA|AC( A|A--AAGG) GUAA-AG-CC C-C-UUAG-U 7681 -UUGAUUU(- c--agugu-- )GAAUACAAA CCAU(uGAAA )GUGUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -ucC-CUC(- -GGAA-U--U U---)----- ---------- 7861 -----GAG|G CUAGAG-GUG CC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGUCAAGC G(UUCAU)AG CGACAUUGCU UUUUGAUUCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UA C-CGAAG(CA -GA-)AUUCG GUAA-GCGU| UGGAU(UGUU C)ACCCACUA 8041 AUAGGGAACA UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-A<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->--UGU UA-CCaGC-A AUAGUAAUUG AACU(UAGUA 8281 C(GAGA)GGA AC-)AGUUCA U|UCGGAUAA UUGGUUUUUG CGG|-CUGUC U(GAUC)AGG 8341 CAUUGCCGCG A-AGC-ACC- AU-CCGC--U GGAUUAUGGC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCA-U GCUA--g-aa cgcg--guga u --|------( ---)------ 8701 ----uaaauc |auuug(-ua uacga)cu-u agaug---ua c-a|acgggg uauuguaagc 8761 gg-uagagua gc----(cuu -guu------ ---------- ---------- ---------- 8821 ----)----g uuacgauc-u gc-|ugagau u|aag--ccu u--ugu-u-g uc--uga-uu 8881 ugu--|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS S.pastoria 9262 bp RNA RNA ~?~???? DEFINITION Saccharomyces pastorianus + 26S. ACCESSION No information KEYWORDS No information. SOURCE Saccharomyces pastorianus + 26S. ORGANISM Saccharomyces pastorianus + 26S. REFERENCE 1 (bases 1 to 243; 3364 to 3911) AUTHORS No information JOURNAL S.carlsbergensis:who:published STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 9262) Corresponding GenBank entry: V01285 J01356 J01357 V01325 Phylo:Eukaryotes,Fungi,yeast LOCUS YSGRG26S 3973 bp DNA PLN 02-JUL-1984 DEFINITION yeast (s.carlsbergensis) 5.8s (3' end) and 26s rrna genes and intergenic region. ACCESSION V01285 J01356 J01357 V01325 misc_RNA <1..213 /note="7S RNA precursor (for 5.8S rRNA)" misc_RNA <1..3714 /note="37S RNA precursor (for 26S rRNA)" rRNA 315..3707 /note="26S rRNA" unsure 2084..2084 /note="t is tentative in [Nucleic Acids Res. 9, 6935-6952 (1981)]" unsure 2099..2099 /note="a is tentative in [Nucleic Acids Res. 9, 6935-6952 (1981)]" unsure 2139..2139 /note="a is tentative in [Nucleic Acids Res. 9, 6935-6952 (1981)]" BASE COUNT 1048 a 749 c 1093 g 1083 t ORIGIN ecori site BASE COUNT 915 a 681 c 984 g 893 t 5789 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~a auuccgugaa u--------- ---------- ---------- -------]-- 181 ---(------ -)-------- ---caucg|A AUCUUU-GAA Cgc-(acauu )-g-c|gccc 241 cuu------g g(-------- ---------- ---------- -----uauu- ---)cc---- 301 --ag-ggggc ---augccug -u-uu-gagc guca--(--- ---uuu---/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------u )--ugaccuc aaaucagg-u aGG----AGU 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UC AAUAAG-C-G G-AGGAAA-- --AGAAACC( 541 AAC-C)GG-G AU|UGCCUUA GU---AAC(G GCGA)GUG-A A-----GCGG CAAA------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------aauu ugaaaucugg 781 uacc-(-uuc ----)--ggu gc-ccgaguu guaauuugg- agagg-gcaa cuuu------ 841 ----gggg-- ---------- ---------- ---------- ---------- cc-gu-uccu 901 uguc-uau-- --g-uuc-c( u-(uggaac- )a)gga-c-- ---------- --------GU 961 --|C(AUA)G |AGGG-(UGA GAAU)-CCCG UG|--u-ggc gaggagug-c g-----guuc 1021 u--uugu--- aaagugcc-- uucgaa---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGAGUU GUU(----UG 1141 GGAA)UGCAG CUCUAA---- GUGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUC-- ---------- ---------- ---------- )CAU-CUAAA GCU----AAA 1381 UA-------- ---------- UUGGC-GAGA GACCGAUAGC GAAC-AAGUA CA(GUGA)U- 1441 G-GAAAGAUG -AAA-AGAAC UUU(ga-aa- )AGAG-AGUG A-AAAAGUAC G-UGAAAU-U 1501 GUUGA-AAG< gg---aaggg cauuugau-c a--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- -------gac augguguuuu gug---cc-c 2221 ucugcuc(cu ugu)gggua- ggggaaucu- -cgca-uuu- cacugg-gcc agca-|ucag 2281 uuuug-gugg caggauaaa- -uccauagga auguagcuug c----(cucg -)----guaa 2341 guau-uaua- gccuguggg- ---aauacug ccagcug-gg acugaggacu g--cgac--- 2401 ---------- -----(guaa ----)----- ---------g uca------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ------agga 2521 ugcu-ggc-- ---------- aua-a---ug guuauaugcc >------GCC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACGUCUAU GCGAGUGu-u ugggu----( -------gua 2641 aa)------- ---------- ---a-ccca- ---------- --uaCGCGUA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ----acguag guuggg--gc cuc------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----gcaa-- ----)----- ---------- -----gaggu --gcacaauc 3061 g--------- ---------- ---------- ---------- -------acc ga-ucc-uga 3121 ug-(u-cuu- -)-cggau-- ggau-uugag u]-------- ---------A AGAGCAUAG- 3181 -CUG-UUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AA|U-AGGGU GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-GUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU CGAAUUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCUGC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-AGAA -GCUc--|-g u|-------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------au 3661 c-aguUUUAU -G|AGG--UA AA-GCGAAUG AUUAGAGGU- -----UCCGG GGUC--(GAA 3721 A-U)--GACC U-UGA-|CCU AUUC-UCAAA CUUUA-AAUA |UGUAAGaag -uccuuguu- 3781 -acuuaauug aacgugga-c auuug----- ---------- ---------- ---------- 3841 ---------- ---------- ----AAUgaa g|AG-CUUUU -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- AACGUAG--- AGUUAAG--G 3961 U|GCCG-GAA U-A--CA-CG CUCAU-ca-- --------ga caccac---- -AAAAGGUGU 4021 U--AGUUCAU CUAGACA-GC CGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCGGCC -GAAUGAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- CAAGCGUGU| U|-------- --ACCUAU-- --ACUCUAC| (- -----)-gcc cugac-gAGU AGGC------ 4441 --AGG|-CG- UG-GA-GG-- --------u- -cAG-Uga-- c------GAA GCCU-----A 4501 G-ACC(GUAA -)GGUCGGG- UCG|A-ACG| G--CCUCUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GACUGAAGU G-GGG|AAAG GUU|CCACGU CA-ACA(-GC AGU)UG|GAC 4681 GUGGGUUAGU |-CGA-UCCU AAGA------ -------<-g augggg(-aa gc)ucc--gu 4741 u---ucaaag --gccug--- ---------- ---------- (auuuuaug) ---------- 4801 --------ca ggccacca-- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA AGGGA-AU-C CGG(UUAAGA UU-)CCGGA| -AC----cug gauaugg-au 4981 uc[uuc---- ---------- ---------- ---------- -----acg(- -guaa--)cg 5041 u--------- ---------- ---------- ---------- -----aa-c] uga-augugg 5101 agac-----g ucg--gcgcg ag-c-ccug- -GG-AGGA(G UUAUCUUU-) UCUUCU-|UA 5161 A-cagcuu-- ---------- auc|a----C CCCG-GAAUU ----GG(UUU AU-)CCGGAG 5221 AU-GG-GG-- ucuua----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----uggc-u gGA-----AG 5341 AGGCCAGCA( --ccuu--)U GCUGGCUC-c ggugcg---c -uugug--ac ggcC-CGUGA 5401 AAA-uccaca -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaaggaa-- ---------- ----uaguuu --uc-aug-- ca-aggUCGU 5581 A|CU--GAUA ACC(GCAGCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| AGUUG-||A- 5641 UA-G--AAUA AU-GUAG-AU A-AGGGAAGU CGGCAA-AAU -AGAUCCGUA AC(UUCG)GG 5701 AUAAGGAUU| GGCUCUAAG- ---------- -(-----)---- -------CUU AGAACU|G(- --GUA)CGGA 6601 CAAGGGGAAU C|-UGACUGU CU(AAUUA)A AACAUAGCAU UGCG|A--UG G|UCA(---g 6661 aaag)UGA-- ---------- --U-GUUGAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU AUCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUUU G---ACA-UU |GUGAAGAGA CAUAGAGGGU 7021 GUAGAAUAAG UGGGAGC--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -UUCG)---- 7141 ---------G C-GCCAGUGA AA-UACCACU |ACCUUUAU- -AGUUU-CUU UACUUAu--- 7201 ------(--- --)------| --a GACAU-UGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAACGAUA AC-)GCAG-A U|G|U|CCU- AAGGG-GGGC |UCAUG-GAG 7621 -A(ACA---- GAAA)UCUCC AGUAGA|AC( A|A--AAGG) GUAAaAG-CC C-CCUUGAUU 7681 -UUGAUUU(u c--agugu-- )GAAUACAAA CCAU(-GAAA )GUGUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -ucC-CUC(- -GGAA-U--U U---)----- ---------- 7861 -----GAG|G CUAGAG-GUG CC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGUCAAGC G(UUCAU)AG CGACAUUGCU UUUUGAUUCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UA C-CGAAG(CA -GA-)AUUCG GUAA-GCGU| UGGAU(UGUU C)ACCCACUA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-A<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->--uGU UA-CC-GC-A AUAGUAAUUG AACU(UAGUA 8281 C(GAGA)GGA AC-)AGUUCA U|UCGGAUAA UUGGUUUUUG CGG|-CUGUC U(GAUC)AGG 8341 CAUUGCCGCG A-AGCUACC- AU-CCGC--U GGAUUAUGGC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCA-U GCUA--g-aa cGCG--GUGA U --|------( ---)------ 8701 ----uaaauc |auuug(-ua uacga)cu-u agaug---ua c-a|acgggg uauuguaagc 8761 ag-uagagua gc----(cuu -guu------ ---------- ---------- ---------- 8821 ----)----g uuacgauc-u gc-|ugagau u|aag--ccu u--ugu-u-g uc--uga-uu 8881 ugu--|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Sac.fibuli 9262 bp RNA RNA 12-JUL-1996 DEFINITION Saccharomycopsis fibuligera. subsp. Endomyces fibuligera; . ACCESSION U09238 KEYWORDS . SOURCE Saccharomycopsis fibuligera. subsp. Endomyces fibuligera. ORGANISM Saccharomycopsis fibuligera. REFERENCE 1 (bases 1 to 3817) AUTHORS Yip,C.W., Liew,C.W. and Nga,B.H. TITLE sequencing, and the use of the 26S rRNA gene in integrative transformation of Saccharomyces cerevisiae for efficient expression of the alha-amylase gene of Endomyces fibuliger Ribosomal RNA genes of Endomyces fibuliger: isolation, JOURNAL World J. Microbiol. Biotechnol. (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 3817) AUTHORS Nga,B.H. TITLE Direct Submission JOURNAL Submitted (27-APR-1994) Microbiology, National University of Singapore, Lower Kent Ridge Road, Singapore, Singapore, 0511 STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U09238 + U10409 BASE COUNT 956 a 665 c 936 g 965 t 5740 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AAACUU UCAGCAACGG AUC|UCUUGG 61 |UUCUCGC|A U|-CGAUGAA GAA|CGCA(- -GCGA-AU)U |GC-GAUAAG UAaugu-|[- 121 gaauugcaga uuuucgugaa u--------- ---------- ---------- -------]-- 181 ---(------ -)-------- ---caucg|A AUCUUU-GAA Cgc-(auauu )-g-c|gcuc 241 uau------a g(-------- ---------- ---------- -----uauu- ---)cu---- 301 --au-agagc ---augccug -u-uu-gagc guca--(--- ---uuu---/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------uuu )--ugaccuc aaaucagg-u aag----GAU 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UC AAUAAG-C-G G-AGGAAA-- --AGAAACC( 541 AAC-A)GG-G AU|UGCCUUA GU---AAC(G GCGA)GUG-A A-----GCGG CAAA------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------aauu ugaaagcuag 781 cacc-(-uuc ----)--ggu gu-ucgcguu guaauuuga- agaua-guu- uccu------ 841 ----ug---- ---------- ---------- ---------- ---------- aguag-uccu 901 uuaucuau-- --g-uuc-c( u-(uggaac- )a)gga-c-- ---------- --------GU 961 --|C(AUA)G |AGGG-(UGA GAAC)-CCCG UA|--ugauu uuggauacua c-----ucuu 1021 u----gu--- gggauucu-- aucgaa---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGAGUU GUU(----UG 1141 GGAA)UGCAG CUCUAA---- GUGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUC-- ---------- ---------- ---------- )CAU-CUAAA GCU----AAA 1381 UA-------- ---------- UUGGC-GAGA GACCGAUAGC GAAC-AAGUA CA(GUGA)U- 1441 G-GAAAGAUG -AAA-AGAAC UCU(ga-ag- )AGAG-AGUG A-AAAAGUAC G-UGAAAU-U 1501 GCUGA-AAG< gg---aaggg cuugaggu-c a--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- -------gac uugguguuua aug---auua 2221 ucaguuc(uu cuu)ggacu- g-ugca-cu- -cguuuuuc- accgg--gcc aaua-|ucag 2281 uuuua-gcgg uagaguacc- -ccuugaa-- augu-ggcuu cc---(uucg -)---gggag 2341 uguua----- uagucuugg- -ggagaucua cuugcug-gg acugaggacu g--cgc---- 2401 ---------- -----(uucg ----)----- ---------- gca------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ------agga 2521 uauu-ggc-- ---------- gua-a---ug accuuaagcc >------GCC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACGUCUAU GCAAGUGU-u ugggu----( -------gua 2641 aa)------- ---------- ---a-cccg- ---------- --uaCGCGUA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ----acguag guuggg--gc cc-------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----uuuaa- ----)----- ---------- ------gggu --gcacaauc 3061 g--------- ---------- ---------- ---------- -------acc ga-uccugaa 3121 guu(u-uca- -)gau----- ggau-uugag u]-------- ---------A AGAGCAUAG- 3181 -CUG-UUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AA|U-AGGGU GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAAGC UCG-UA---G CG-GUUCUGA (CGUGCAAA) 3301 UCG-a-UCGU CGAAUUUGGG UAUAGgG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCUGC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-AGAA -GCUc--|-g u|-------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------au 3661 c-aguUUUAU -G|AGG--UA AA-GCGAAUG AUUAGAGGU- -----GUUGG GGAC--(GCA 3721 A-G)--GUCC U-UAG-|CCU AUUC-UCAAA CUuUC-Aaug |UGUAAGaag -uccuuguu- 3781 -acuuaauug aacgugga-c auuug----- ---------- ---------- ---------- 3841 ---------- ---------- ----AAUgaa g|AG-CUUUU -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- AACGUGG--- AGUUAAA--G 3961 U|GCcg-GAA U-A--UA-CG CUCAU-CA-- --------ga caccac---- -AAAAGGUGU 4021 U--AGUUCAU CUAGACA-GC CGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCGGCC -GAAUGAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- CAAGCGUAU| U|-------- --ACUUAU-- --ACUCCAC| (- -----)-gcc cuaac-gAGU AgGC------ 4441 --AGG|-CG- UG-GA-GG-- --------u- -uUG-Uga-- c------GAA GCCU-----U 4501 U-GGU(GUGA -)ACCUGGG- UAG|A-ACA| G--CCUCUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GACUGAAGU G-GGG|AAAG GUU|CCAUAU CA-ACA(-GC AGU)UG|GAU 4681 AUGGGUUAGU |-CGA-UCCU AAGA------ -------<-g augggg(-aa gc)ucc--gu 4741 u---ucaaag a-gccug--- ---------- ---------- (auuuuu--) ---------- 4801 --------ca ggccacca-- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA AGGGA-AU-C UGG(UUAAAA UU-)CCAGA| -AC----uug gauaugg-au 4981 uc[uuc---- ---------- ---------- ---------- -----acg(- -guaa--)cg 5041 u--------- ---------- ---------- ---------- -----aa-c] uga-auguga 5101 agac-----g ucg--guaua ag-c-ccug- -GG-AGGA(G UUAUCUUU-) UCUUCU-|UA 5161 A-cagcu--- ---------u aac|a----C CCUG-GAAUU ----GG(UUU AU-)CCGGAG 5221 AU-AG-GG-- ucuua----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----uggc-u gGA-----AG 5341 AGCGCAGUA( --ccuu--)U GCUGCGuc-c ggugcg---c -uuaug--ac ggcC-CUUGA 5401 AAA-uucaca -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaaggaa-- ---------- ----uaguuu --uc-aug-- cc-aagUCGu 5581 A|CU--CAUA ACC(GCAGCA )GG|UCU-CC AAGGU(UAAC A)GCCUCU-| AGUUG-||A- 5641 UA-G--AAUA AU-GUAG-AU A-AGGGAAGU CGGCAA-AAU -AGAUCCGUA AC(UUCG)GG 5701 AUAAGGAUU| GGCUCUAAG- ---------- -(-----)---- -------CUU AGAACU|G(- --GUA)CGGA 6601 CAAGGGGAAU C|-UGACUGU CU(AAUUA)A AACAUAGCAU UGCG|A--UG G|UCA(---g 6661 aaag)UGA-- ---------- --U-GUUGAC GCAAUGUG-- AUUUCuGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU AUCUACUAUC 6901 UA|GCGAAAc c|aca-GCGA AG(GGAA-CG G-)CUUCGCA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUUU G---ACA-UU |GUGAAGAGA CAUAGAGGGU 7021 GUAGAAUAAG UGGGAGC--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -UUCG)---- 7141 ---------G C-GCCGGUGA AA-UACCACU |ACCUCUAU- -CGUUU-CUU UACUUAU--- 7201 ------(--- --)------| --a GACAU-UGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAACGAUA AC-)GCAG-A U|G|U|CCU- AAGGG-GGAC |UCAUG-AAG 7621 -A(ACA---- GAAA)UCUUC AGUAGA|AU( A|A--AAGG) GUAAAAG-UC C-CCUUGAUU 7681 -UUGAUUU(u c--agugu-- )GAAUACAAA CCAU(-GAAA )GUGUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -ucC-CUC(- -GGAA-U--U U---)----- ---------- 7861 -----GAG|G CUAGAG-GUG CC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGUCAAGC G(UUCAU)AG CGACAUUGCU UUUUGAUUCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UA C-CGAAG(CA -GA-)AUUCG GUAA-GCGU| UGGAU(UGUU C)ACCCACUA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-A<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->--uGU UA-UC-GC-A AUAGUAAUUG AACU(UAGUA 8281 C(GAGA)GGA AC-)CGUUCA U|UCAGAUAA UUGGUUUUUG CAG|-CUGUC U(GAUC)AGG 8341 CAUUGCUGCG A-AGCUACC- AU-CUGU--U GGAUUAUGGC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCA-U GCUA--g-aa aGCG--AUGA U<-uuauucc cucgccca-- -uuuua---g 8461 uu-gguacga -auaaggc-a cauuaguguc ------gcug aaccauauuu acugguaugg 8521 agcucuugc- ggaaag-gc- uugg-guucu ugcuaguuuu cuuaauuuca cu-------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- --------au gagcgagga> --|------( ---)------ 8701 ----uaaauc |cuuug(-ca uacga)cu-u aacug---ua c-a|acgggg uauuguaagc 8761 ag-uagagua gc----(cuu -guu------ ---------- ---------- ---------- 8821 ----)----g uuacgauc-u gc-|ugagau u|aag--ccu u--ugu-u-g ucc--ga-uu 8881 uguu-|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (5)-Basidi 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS (6)-Hymeno 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS (7)-Agaric 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS H.citrinop 9262 bp RNA RNA 01-AUG-1997 DEFINITION Hygrocybe citrinopallida.; . ACCESSION U66435 KEYWORDS . SOURCE Hygrocybe citrinopallida. ORGANISM Hygrocybe citrinopallida. REFERENCE 1 (bases 1 to 2068) AUTHORS Lutzoni,F. TITLE multiple data sets Phylogeny of lichen- and non lichen-forming omphalinoid mushrooms and the utility of testing for combinability among JOURNAL Syst. Biol. (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 2068) AUTHORS Lutzoni,F. TITLE Direct Submission JOURNAL Submitted (09-AUG-1996) Botany, Field Museum of Natural History, Roosevelt Road at Lake Shore Drive, Chicago, IL 60605-2496, USA STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U66435 BASE COUNT 443 a 327 c 457 g 394 t 7641 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~CAACUU UCAACAACGG AUC|UCUUGG 61 |CUCUCGC|A U|-CGAUGAA GAA|CGCA(- -GCGA-AA)U |GC-GAUAAG UA-augu|[- 121 gaauugcaga auucagugaa u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---caucg|A AUCUUU-GAA Cgc-(accuu )-g-c|gcuc 241 cuu------g g(-------- ---------- ---------- -----uauu- ---)cc---- 301 --ga-ggagc ---augccug -u-uu-gagu auca--(--- ---uua---/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------u )--ugaucuc aaaucagg-u aGG----ACU 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UC AAUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-A)AG-G AU|UCCCCUA GU---AAC(U GCGA)GUG-A A-----GCGG GAAA------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------aauu uaaaaucugg 781 cgguc-(cuu gc-)--ggcu gu-ccgaguu guaaucuag- agaaguguuu ucc------- 841 ----gugc-- ---------- ---------- ---------- ---------- ug-ga-c-cg 901 ugua-caa-- --g-ucu-c( u-(uggaau- )a)gag-c-- ---------- --------GU 961 --|C(AUA)G |AGGG-(UGA GAAU)-CCCG UC|-uuugac acggacu-ac c-----agug 1021 cuu-ugu--- -gaugcgc-u cucaaa---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGAGUU GUU(----UG 1141 GGAA)UGCAG CUCAAA---- AUGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUC-- ---------- ---------- ---------- )CAU-CUAAA GCU----AAA 1381 UA-------- ---------- UUGGC-GAGA GACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAUG -AAA-AGAAC UUU(gg-aa- )AGAG-AGUU A-AACAGUAC G-UGAAAU-U 1501 GUUGA-AAG< gg---aaacg cuugaaguca ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- -------guc gcguuggccg agg-aucaac 2221 cuugc--(aa uuu)--gcu- gggcguacuu -cucg--gu- ugaugg-guc agca-|ucaa 2281 uuuug-accg uuggauaaag -guuggggga auguggcauc -----(uucg -)-----gau 2341 guguu-aua- gcccuuagu- -uguauacaa cg-guug-gg auugaggaac u--cagcacg 2401 c-cgca---- -aggccgggg uuuacccacg uu----cgug cuu]------ ---------- 2461 ---------- ---------- ---------- ---------- ---------- ------agga 2521 ugcu-ggc-- --------a- -----uaaug gcuuuaaucg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUGCCU GCGAGUGU-u ugggu----( -------gga 2641 aa)------- ---------- ---a-cccg- ---------- --agCGCGUA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------aag uugaga--uc ccu------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----gucgu- ----)----- ---------- -----gggga --gcaucgac 3061 g--------- ---------- ---------- ---------- -------ccc gg-acc-aga 3121 cc-(--uuuu -)-gugac-- ggau-ccgcg g]-------- ---------U UGAGCAUGU- 3181 -AUG-UUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AA|U-AGGGU GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-AUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU CGAAUUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCUGC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-AGAA -ACUc--|-- -|-aug---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------u 3661 c-agaUUUAU -G|UGG--UA AA-GCGAAUG AUUAGAGGC- -----CUUGG GGUU--(gaa 3721 a-c)--AACC U-UAA-|CCU AUUC-UCAAA CUUUA-AAUA |UGUAAGauc -gagccguc- 3781 (-ucuugauu g)gaccgcuc g--ncg---- ---------- ---------- ---------- 3841 ---------- ---------- ----AUUg-a g|AG-UUUCU -AGU--GGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- AACGUGA--- GGUUAAG--G 3961 U|GCCG-GAA U-U--CA-CG CUCAU-ca-- --------ga caccac---- -AAAAGGUGU 4021 U--AGUUCAU CUAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAACC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- CAAGCGUGA| U|-------- --ACCCAU-- --ACCUCAC| (- -----)-gcg cugac-gAGU AGGC------ 4441 --AGG|-CG- UG-GA-GG-- --------u- -cag-uga-- a------GAA GCCU-----C 4501 G-GCA(GUGA -)UGCUGGG- UGA|A-ACN| G--CCUCUA- GUGC-AGA-U CUUG~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~)~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ (~~~~~~~~) ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~-~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- (~~~~~)~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS C.chrysoph 9262 bp RNA RNA 01-AUG-1997 DEFINITION Chrysomphalina chrysophylla.; . ACCESSION U66430 KEYWORDS . SOURCE Chrysomphalina chrysophylla. ORGANISM Chrysomphalina chrysophylla. REFERENCE 1 (bases 1 to 2029) AUTHORS Lutzoni,F. TITLE multiple data sets Phylogeny of lichen- and non lichen-forming omphalinoid mushrooms and the utility of testing for combinability among JOURNAL Syst. Biol. (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 2029) AUTHORS Lutzoni,F. TITLE Direct Submission JOURNAL Submitted (09-AUG-1996) Botany, Field Museum of Natural History, Roosevelt Road at Lake Shore Drive, Chicago, IL 60605-2496, USA STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U66430 BASE COUNT 439 a 320 c 449 g 385 t 7669 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~CAACUU UUAACAACGG AUC|UCUUGG 61 |CUCUCGC|A U|-CGAUGAA GAA|CGCA(- -GCGA-AA)U |GC-GAUAAG UA-augu|[- 121 gaauugcaga auucagugaa u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---caucg|A AUCUUU-GAA Cgc-(accuu )-g-c|gcuc 241 cuu------g g(-------- ---------- ---------- -----uauu- ---)cc---- 301 --ga-ggagc ---augccug -u-uu-gagu guca--(--- ---uua---/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------u )--ugaccuc aaaucagg-u aGN----ACU 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UC AAUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-A)AG-G AU|UCCCCUA GU---AAC(U GCGA)GUG-A A-----GCGG GAAA------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------aauu uaaaaucugg 781 uaguc-(--u au-)--ggcu gc-ccgaguu guaaucuag- agaaguguuu ucc------- 841 ----gugc-- ---------- ---------- ---------- ---------- cg-ga-c-cg 901 ugua-caa-- --g-ucu-c( u-(uggaau- )a)gag-c-- ---------- --------GU 961 --|C(AUA)G |AGGG-(UGA GAAU)-CCCG UC|-uuugac acggacu-ac c-----ggug 1021 cuucugu--- -gaugcac-u cucaac---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGAGUU GUU(----UG 1141 GGAA)UGCAG CUCAAA---- AUGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUC-- ---------- ---------- ---------- )CAU-CUAAA GCU----AAA 1381 UA-------- ---------- UUGGC-GAGA GACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAUG -AAA-AGAAC UUU(gg-aa- )AGAG-AGUU A-AACAGUAC G-UGAAAU-U 1501 GUUAA-AAG< gg---aaacg cuugaaguca ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- -------guc guguug-ucc agagaucaac 2221 cuaac--(uu uu----guu- gggugcacuu -ucug--gu- uaaugg-guc agca-|ucaa 2281 uuuug-auug uuggauaaag uccaagg-ga auguggcauc -----(uucg -)-----gau 2341 guguu-aua- gcccucggu- -cgcauacaa ca-guug-gg auugaggaac u--cagcaug 2401 c-cgca---- aggccggggu uuuacccacg ----uacgug cuu]------ ---------- 2461 ---------- ---------- ---------- ---------- ---------- ------agga 2521 ugcu-ggc-- --------a- -----uaaug gcuuuaaucg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUGCCC GCGAGUGU-u ugggu----( -------ggu 2641 aa)------- ---------- ---a-cccg- ---------- --agCGCGCA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------aaa uugaga--uc cc-------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----ugucg- ----)----- ---------- ----ugggga --gcaucgau 3061 g--------- ---------- ---------- ---------- -------ccc gg-acu-uga 3121 cc-(--uuuu -)-gugac-- ggau-ccgcg g]-------- ---------U UGAGCGUGU- 3181 -AUG-UUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AA|U-AGGGU GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-AUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU CGAAUUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCUGC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-AGAA -ACUc--|-- -|-auua--- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------u 3661 c-agaUUUAU -G|UGG--UA AA-GCGAAUG AUUAGAGGC- -----CUUGG GGCU--(gaa 3721 a-c)--AGCC U-UAA-|CCU AUUC-UCAAA CUUUA-AAUA |UGUAAGaac -gagccguc- 3781 (-ucuugacu g)gaccgcuc g--gug---- ---------- ---------- ---------- 3841 ---------- ---------- ----AUUg-a g|AG-UU-CU -AGU-GGGCC -AUUUNNGG( 3901 G-NAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAN)CCG-- AACGCGA--- NGUUAAG--G 3961 U|GCCG-GAA U-U--UA-CG CUCAU-ca-- --------ga caccac---- -AAAAGGUGU 4021 N--AGNNCAU CUAGACA-GC AGGNCGGNGG NC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGNC -GAAUGAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- UAAGCGUNA| U|-------- --ACCCAU-- --nCCUCGn| (- -----)-gcg cugac-gAGU AGGC------ 4441 --AGG|-NG- UG-GN-GG-- --------u- -cag-nga-- a------GAU GNCU-----N 4501 G-G-A(GNGA -)UGCUGGG- UG-|A-ACG| G--NCUCUA- GUGC-AGA-U CU-g~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~)~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ (~~~~~~~~) ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~-~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- (~~~~~)~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS C.lateriti 9262 bp RNA RNA 01-AUG-1997 DEFINITION Clitocybe lateritia.; . ACCESSION U66431 KEYWORDS . SOURCE Clitocybe lateritia. ORGANISM Clitocybe lateritia. REFERENCE 1 (bases 1 to 2102) AUTHORS Lutzoni,F. TITLE multiple data sets Phylogeny of lichen- and non lichen-forming omphalinoid mushrooms and the utility of testing for combinability among JOURNAL Syst. Biol. (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 2102) AUTHORS Lutzoni,F. TITLE Direct Submission JOURNAL Submitted (09-AUG-1996) Botany, Field Museum of Natural History, Roosevelt Road at Lake Shore Drive, Chicago, IL 60605-2496, USA STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U66431 BASE COUNT 480 a 337 c 473 g 433 t 7539 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~CAACUU UCAACAACGG AUC|UCUUGG 61 |CUCUCGC|A U|-CGAUGAA GAA|CGCA(- -GCGA-AA)U |GC-GAUAAG UA-augu|[- 121 gaauugcaga auucagugaa u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---caucg|A AUCUUU-GAA Cgc-(accuu )-g-c|gcuc 241 cuu------g g(-------- ---------- ---------- -----uauu- ---)cc---- 301 --ga-ggagc ---augccug -u-uu-gagu guca--(--- ---uua---/ cauuggugug 361 auaauuaucu acgccauuuu ugaugugaag caguuuauau aaaguucagc uucuaacugu 421 cuauugacuu ggacaaucua auugaccauu )--ugaccuc aaaucagg-u aGG----ACU 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UC AAUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-A)AG-G AU|UCCCCUA GU---AAC(U GCGA)GUG-A A-----GCGG GAAA------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------aauu uaaaaucugg 781 ugguc-(cuu gu-)--ggcu au-ccgaguu guaaucuag- agaaguguua ucc------- 841 ----gcgc-- ---------- ---------- ---------- ---------- ug-ga-c-cg 901 ugua-caa-- --g-ucu-c( c-(uggaau- )g)gag-c-- ---------- --------AU 961 --|C(AUA)G |AGGG-(UGA GAAU)-CCCG UC|-uuugac auggacu-ac c-----aggg 1021 cuu-ugu--- -gaugcgc-u cucaaa---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGAGUU GUU(----UG 1141 GGAA)UGCAG CUCAAA---- AUGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUC-- ---------- ---------- ---------- )CAU-CUAAA GCU----AAA 1381 UA-------- ---------- UUGGC-GAGA GACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAUG -AAA-AGAAC UUU(gg-aa- )AGAG-AGUU A-AACAGUAC G-UGAAAU-U 1501 GUUGA-AAG< gg---aaacg cuugaaguca ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- -------guc gcguug-gcu ggaaaucaac 2221 cuugc--(uc uuu--ugugg ggugu-acuu -ucua--gu- ugacgg-guc agca-|ucaa 2281 uuuug-acug uuggaaaaag -guugaggga auguggcauc -----(uucg -)-----ggu 2341 gug-uuaua- gcccuugau- -uguauacaa cg-guug-gg auugaggaac u--cagcaug 2401 c-cgca---- aggccggguu uuaaaccacg uaaca---ug cuu]------ ---------- 2461 ---------- ---------- ---------- ---------- ---------- ------agga 2521 ugcu-gnc-- --------a- -----aaaug gcuuuaaucg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUGCCU GCGAGUGU-u ugggu----( -------gga 2641 aa)------- ---------- ---a-cccg- ---------- --agCGCAUA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ------aaag uugaga--uc ccu------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----gucgu- ----)----- ---------- -----gggga --gcaucgac 3061 g--------- ---------- ---------- ---------- -------ccc gg-auc-aga 3121 cc-(--uuuu -)-gugac-- gauc-ccgcg g]-------- ---------U AGAGCAUGU- 3181 -AUG-UUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AA|U-AGGGU GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-AUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU CGAAUUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCUGC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-AGAA -ACUc--|-- -|-aug---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------u 3661 c-agaUUUAU -G|UGG--UA AA-GCGAAUG AUUAGAGGC- -----CUUGG GGUU--(gaa 3721 a-c)--AACC U-UAA-|CCU AUUC-UCAAA CUUUA-AAUA |UGUAAGaac -gagccguc- 3781 (-ucuugauu g)gaccgcuc g--gcg---- ---------- ---------- ---------- 3841 ---------- ---------- ----AUUg-a g|AG-UUUCU -AGU-GGGCC -A-U-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- AACGCGA--- GGUUAAG--G 3961 U|GCCG-GAA U-U--UA-CG CUCAU-ca-- --------ga caccac---- -AAAAGGNGU 4021 U--AGUUCAU CUAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- UAAGCGUGA| U|-------- --ACCCAU-- --ACCUCGC| (- -----)-gcg cugac-gANU AGGC------ 4441 --AGN|-CG- UG-GA-GG-- --------u- -cag-uga-- a------GAA GCCU-----N 4501 G-GCA(GCGA -)UGCUGGG- UGA|U-ACG| G--CCUCUA- GUGC-AGA-U CUUG-u|g~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~)~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ (~~~~~~~~) ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~-~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- (~~~~~)~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS G.marchant 9262 bp RNA RNA 01-AUG-1997 DEFINITION Gerronema marchantiae.; . ACCESSION U66432 KEYWORDS . SOURCE Gerronema marchantiae. ORGANISM Gerronema marchantiae. REFERENCE 1 (bases 1 to 1896) AUTHORS Lutzoni,F. TITLE multiple data sets Phylogeny of lichen- and non lichen-forming omphalinoid mushrooms and the utility of testing for combinability among JOURNAL Syst. Biol. (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 1896) AUTHORS Lutzoni,F. TITLE Direct Submission JOURNAL Submitted (09-AUG-1996) Botany, Field Museum of Natural History, Roosevelt Road at Lake Shore Drive, Chicago, IL 60605-2496, USA STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U66432 BASE COUNT 434 a 329 c 436 g 395 t 7668 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~UAACUU UCAACAACGG AUC|UCUUGG 61 |UUCUUGC|A U|-CGAUGAA GAA|CGCA(- -GCGA-AA)U |GC-GAUACG UA-augu|[- 121 gaauugcaga auucagugaa u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---caucg|A AUCUUU-GAA Cgc-(accuu )-g-c|gccc 241 cuu------g g(-------- ---------- ---------- -----uauu- ---)cc---- 301 --ga-ggggc ---augccug -u-uu-gagu guca--(--- ---uua---/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------u )--ugaccuc aaaucagg-u aAG----ACU 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UC AAUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-A)AG-G AU|UCCCCUA GU---AAC(U GCGA)GUG-A A-----GCGG GAAA------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------aauu uaaaaucugg 781 cggu--(uaa cu-)---ccc gu-ccgaguu guaaucuga- agaagcauuu ucg------- 841 ----augc-- ---------- ---------- ---------- ---------- ca-gc-c-cg 901 ugua-caa-- --g-ucu-c( u-(uggaac- )a)gag-c-- ---------- --------GU 961 --|C(AUA)G |AGGG-(UGA GAAU)-CCCG UC|-cauggc acggac--au a--gcuggug 1021 uca-uau--- -gauaugcuu uucaaa---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGAGUU GUU(----UG 1141 GGAA)UGCAG CUCAAA---- AUGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUC-- ---------- ---------- ---------- )CAU-CUAAA GCU----AAA 1381 UA-------- ---------- UAGGC-AAGA AACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAUG -AAA-AGCAC UUU(ga-aa- )AGAG-AGUU A-AACAGUAC G-UGAAAU-U 1501 GUUGA-AAG< gg---aaacg cuugaaguca ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- -------guc acauug-gcc gggacucagc 2221 cgcga--(cu uu-ggu-cu- ugguguacuu -ccug--gu- ugaugg-guc aaua-|ucua 2281 uuuug-gucg acggauaaau -ucggcuuga auguagca-- ----cccuuu uggg-----u 2341 gug-uuaua- gcuugucgu- -cugauacgc cg-acug-gg auugaggauc g--cagcacg 2401 c-c--cuu-- gug--gccgg gguucgccca cguauu-gug cuu]------ ---------- 2461 ---------- ---------- ---------- ---------- ---------- ------agga 2521 uauu-gac-- --------a- -----uaaug acnuuaaucg >------ACC CGU(CUUGAN 2581 AC)ACGG|NC CAAGG-AGUC UAACAUGCCU GCGAGUAU-u agggu----( ------gacu 2641 aa)------- ---------- ---a-cccu- ---------- --ugUGCGCA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------cag uuggga--cc cuc------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( -----ucac- ----)----- ---------- -----gaggg --gcaccgac 3061 g--------- ---------- ---------- ---------- -------ccc gg-ccu-uga 3121 uc-(--uucu -)-gugac-- ggug-ccgcg g]-------- ---------U AGAGCAUGU- 3181 -AUG-UUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AA|U-AGGGC GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-AUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU CAAAUUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCUGC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-AGAA -ACUc--|-- -|-aua---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------u 3661 u-agaUUUAU -G|UGG--UA AA-GCGAAUG AUUAGAGGC- -----CUUGG GGUU--(gaa 3721 a-c)--AACC U-UAA-|CCU AUUC-UCAAA CUUUA-AAUA |UGUAAGauc -gggccguc- 3781 (ucuuaauuu g)gaccgccu g--acg---- ---------- ---------- ---------- 3841 ---------- ---------- ----AUUg-a g|AG-UUUCU -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- AACGCGA--- GGUUAAG--G 3961 U|GCCG-GAA U-G--UA-CG CUCAU-ca-- --------ga caccac---- -AAAAGGUGU 4021 U--AGUUCAU CUAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- CAAGCGUGC| U|-------- --ACCCAU-- --ACCUCGC| (- -----)-gcc cugac-gAGU AGGC------ 4441 --AGG|-CG- UG-GG-GG-- --------u- -uug-uga-- a------GAA GCUU-----U 4501 G-GCA(GUG~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~)~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ (~~~~~~~~) ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~-~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- (~~~~~)~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS G.strombod 9262 bp RNA RNA 01-AUG-1997 DEFINITION Gerronema strombodes.; . ACCESSION U66433 KEYWORDS . SOURCE Gerronema strombodes. ORGANISM Gerronema strombodes. REFERENCE 1 (bases 1 to 1785) AUTHORS Lutzoni,F. TITLE multiple data sets Phylogeny of lichen- and non lichen-forming omphalinoid mushrooms and the utility of testing for combinability among JOURNAL Syst. Biol. (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 1785) AUTHORS Lutzoni,F. TITLE Direct Submission JOURNAL Submitted (09-AUG-1996) Botany, Field Museum of Natural History, Roosevelt Road at Lake Shore Drive, Chicago, IL 60605-2496, USA STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U66433 BASE COUNT 347 a 240 c 339 g 324 t 8012 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~CAACUU UCAGCAACG- A-C|UCNNNN 61 |NNNNNNN|N N|-NNNNNNN NNN|NNNN(- -NNNN-NN)N |ug-gaua-g u--augu|[- 121 -cauugcag- auucagugaa u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---caucg|A AUCUUU-GAA Cgc-(accuu )-g-c|acuc 241 cuu------g g(-------- ---------- ---------- -----uauu- ---)cc---- 301 --ga-ggagu ---augccug -u-uu-gagu guca--(--- ---uua---/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------u )--ugaccuc aaaucagg-u aGG----ACU 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UC AAUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-A)AG-G AU|UCCCCUA GU---AAC(U GCGA)GUG-A A-----GCGG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------aauu uaaaaucugg 781 caguc-(-cu cu-)--ggcu gu-ccgaguu guaauuuag- agaaguguua ccc------- 841 ----gugc-- ---------- ---------- ---------- ---------- ug-ga-c-cg 901 uaua-caa-- --g-ucc-u( c-(uggaau- )g)ggg-c-- ---------- --------GU 961 --|C(AUA)G |AGGG-(UGA GAAU)-CCCG UC|-uuugau acggacu-ac c-----agug 1021 cuu-ugu--- -ggugcgc-u cucgaa---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGAGUU GUU(----UG 1141 GGAA)UGCAG CUCAAA---- AUGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUC-- ---------- ---------- ---------- )CAU-CUAAA GCU----AAA 1381 UA-------- ---------- UAGGC-GAGA GACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAUG -AAA-AGAAC UUU(gg-aa- )AGAG-AGUU A-AACAGUAC G-UGAAAU-U 1501 GCUGA-AAG< gg---aaacg cuugaaguca ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- -------guc gcguug-uuc aagaaucagc 2221 cuugc--(uu uuu--ugcuu ggugu-acuu -uuug--uu- cgacgg-guc agca-|ucag 2281 uuuug-acca cuggauaagg -gccagggaa auguggcauc -----(cucg -)-----gau 2341 guguuauag- ucucu-agu- -cguauacag ug-guug-gg acugaggaac u--cagcacg 2401 c-cgca-agg acgg-gucuc uga-----cu acguuacgug cuu]------ ---------- 2461 ---------- ---------- ---------- ---------- ---------- ------agga 2521 ugcu-ggc-- --------a- -----uaaug gcuuuaaucg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUGCCU GCGAGUGU-u ugggu----( -------gga 2641 aa)------- ---------- ---a-cccg- ---------- --agCGCGUA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------aag uugaga--uc ucu------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----gucau- ----)----- ---------- -----ggaga --gcaucgac 3061 g--------- ---------- ---------- ---------- -------ccc au-acc-uga 3121 ug-(--uuua -)-cugac-- ggau-augcg g]-------- ---------U AGAGCAUGU- 3181 -AUG-UUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AA|U-AGGGU GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-AUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU CGAAUUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCUGC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-AGAG -ACUc--|-- -|-gua---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------u 3661 c-agaUUUAU -G|UGG--UA AA-GCGAAUG AUUAGAGGC- -----CUUGG GGUU--(gua 3721 a-c)--AACC U-UAA-|CCU AUUC-UCAAA CUUUA-AAUA |UGUAAGaac -aag-uguc- 3781 (-acuuaauu g)gaccccuu g--gug---- ---------- ---------- ---------- 3841 ---------- ---------- ----AUUg-a g|a~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~-- ~~~~~~~--~ 3961 ~|~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~(~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~-- -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~)~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ (~~~~~~~~) ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~-~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- (~~~~~)~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS G.subclava 9262 bp RNA RNA 01-AUG-1997 DEFINITION Gerronema subclavatum.; . ACCESSION U66434 KEYWORDS . SOURCE Gerronema subclavatum. ORGANISM Gerronema subclavatum. REFERENCE 1 (bases 1 to 2120) AUTHORS Lutzoni,F. TITLE multiple data sets Phylogeny of lichen- and non lichen-forming omphalinoid mushrooms and the utility of testing for combinability among JOURNAL Syst. Biol. (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 2120) AUTHORS Lutzoni,F. TITLE Direct Submission JOURNAL Submitted (09-AUG-1996) Botany, Field Museum of Natural History, Roosevelt Road at Lake Shore Drive, Chicago, IL 60605-2496, USA STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U66434 BASE COUNT 422 a 302 c 416 g 377 t 7745 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~CAACUU UCAGCAACGG AUC|UCUUGG 61 |CUCUCGC|A U|-CGAUGAA GAA|CGCA(- -GCGA-AA)U |GC-GAUAAG UA-augu|[- 121 gaauugcaga auucagugaa u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---caucg|A AUCUUU-GAA Cgc-(accuu )-g-c|acuc 241 cuu------g g(-------- ---------- ---------- -----uauu- ---)cc---- 301 --ga-ggagu ---augccug -u-uu-gagu guca--(--- ---uua---/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------u )--ugaccuc aaaucagg-u aGG----ACU 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UC AAUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-A)AG-G AU|UCCCCUA GU---AAC(U GCGA)GUG-A A-----GCGG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------aauu uaaaaucugg 781 caguc-(--u cu-)--ggcu gu-ccgaguu guaauuuag- agaaguguug ccc------- 841 ----gcgc-- ---------- ---------- ---------- ---------- ug-ga-c-cg 901 uaua-caa-- --g-ucc-u( c-(uggaau- )g)agg-c-- ---------- --------GU 961 --|C(AUA)G |AGGG-(UGA GAAU)-CCCG UC|-uuugau acggacu-ac c-----agug 1021 cuu-ugu--- -ggugcgc-u cucgaa---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGAGUU GUU(----UG 1141 GGAA)UGCAG CUCAAA---- AUGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUC-- ---------- ---------- ---------- )CAU-CUAAA GCU----AAA 1381 UA-------- ---------- UAGGC-GAGA GACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAUG -AAA-AGAAC UUU(gg-aa- )AGAG-AGUU A-AACAGUAC G-UGAAAU-U 1501 GCUGA-AAG< gg---aaacg cuugaaguca ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- -------guc gcgucg-uuc aagaaucaac 2221 cuugc--(uu uu----gcu- ugguguacuu -uuug--uu- cgacgg-guc agca-|ucag 2281 uuuug-acca uuggauaagg gccaagga-a auguggcauc -----(uucg -)-----gau 2341 guguu-aua- gucuuuggu- -cguauacag ug-guug-gg acugaggaac u--cagcacg 2401 c-cgca-agg acgg-gucuu uga-----cu acguuacgug cuu]------ ---------- 2461 ---------- ---------- ---------- ---------- ---------- ------agga 2521 ugcu-ggc-- --------a- -----uaaug gcuuuaaucg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGA--GUC UAACAUGC-U GCNAGUGU-n ngggu----( -------gga 2641 aa)------- ---------- ---a-cc-g- ---------- --agCGCGCA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------aag uugaga--uc ucu------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----gucau- ----)----- ---------- -----ggaga --gcaucgac 3061 n--------- ---------- ---------- ---------- -------ccc au-acc-uga 3121 ug-(--uuua -)-cugac-- ggau-augcg g]-------- ---------n AGAGCAUGU- 3181 -AUG-UUGGN ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AA|U-AGGGU GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-AUUCUGA (CGUGCAAA) 3301 UCG-A-UCGN CGAAUUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCUGC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-AGAG -ACUc--|-- -|-gua---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------u 3661 c-agaUUUAU -G|UGG--UA AA-GCGAAUG AUUAGAGGC- -----CUUGG GGUU--(gua 3721 a-c)--AACC U-UAA-|CCU AUUC-UCAAA CUUUA-AAUA |UGUAAGaac -aaggcguc- 3781 (-acuuaauu g)gaccccuu ---gug---- ---------- ---------- ---------- 3841 ---------- ---------- ----a-ug-a g|ag--NNNN -NNN-NNNNN -NNN-NNNN( 3901 N-NNNN)NNN NNN-NNNN-N NNNNNN(NN- NNNN)NNN-- NNNNNNN--- NNNNNNN--N 3961 N|NNNN-NNN U-U--CA-CG NUCAU-ca-- --------gn caccac---- -ANNUGGUGU 4021 U--AGUUCAU CUAGACA-GN AGNACGGNGG CC(AUNG-AA GUC)GGAACC CN|C(UAN)G 4081 |GAGUGU(GU NACA)AC|-- -UCACCUGCC -GAAUGAACU AGN|CC-UGA AAA--UGGAU 4141 G--GCG-CU- UAAGCGUGA| U|-------- --ACCCAU-- --ACCUCAC| (- -----)-gcg cugac-gANU AGGC------ 4441 --AGG|-CG- UN-GN-GG-- --------u- -uug-uga-- u------GAA GCCU-----U 4501 G-GCA(GUGA -)UGCUGGG- UGA|A-ACA| G--CCUCUA- GUGC-AGA-U CU~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~)~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ (~~~~~~~~) ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~-~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- (~~~~~)~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS O.epichysi 9262 bp RNA RNA 01-AUG-1997 DEFINITION Omphalina epichysium.. ACCESSION No information KEYWORDS No information. SOURCE Omphalina epichysium. ORGANISM Omphalina epichysium. REFERENCE 1 (bases 1 to 2120) AUTHORS Lutzoni,F. TITLE mushrooms and the utility of testing for combinability among multiple data sets Phylogeny of lichen- and non lichen-forming omphalinoid JOURNAL Syst. Biol. (1996) In press STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U66442 LOCUS OEU66442 2074 bp DNA PLN 01-AUG-1997 DEFINITION Omphalina epichysium small subunit ribosomal RNA gene, partial sequence, internal transcribed spacers ITS1 and ITS2, complete sequence, 5.8S ribosomal RNA gene, complete sequence, large subunit ribosomal RNA gene, partial sequence. ACCESSION U66442 NID g2289050 KEYWORDS . SOURCE Omphalina epichysium. ORGANISM Omphalina epichysium Eukaryotae; mitochondrial eukaryotes; Fungi; Basidiomycota; Hymenomycetes; Agaricales; Tricholomataceae; Omphalina. REFERENCE 1 (bases 1 to 2074) AUTHORS Lutzoni,F. TITLE Phylogeny of lichen- and non lichen-forming omphalinoid mushrooms and the utility of testing for combinability among multiple data sets JOURNAL Syst. Biol. (1996) In press REFERENCE 2 (bases 1 to 2074) AUTHORS Lutzoni,F. TITLE Direct Submission JOURNAL Submitted (09-AUG-1996) Botany, Field Museum of Natural History, Roosevelt Road at Lake Shore Drive, Chicago, IL 60605-2496, USA FEATURES Location/Qualifiers source 1..2074 /organism="Omphalina epichysium" /strain="Redhead 5223 for ITS1, 5.8S, and ITS2; Redhead 3140 for large subunit nrRNA gene; DAOM" /db_xref="taxon:50973" rRNA <1..51 /product="small subunit ribosomal RNA" misc_RNA 52..240 /note="internal transcribed spacer; ITS1" rRNA 241..398 /product="5.8S ribosomal RNA" misc_RNA 399..612 /note="internal transcribed spacer; ITS2" rRNA 613..>2074 /product="large subunit ribosomal RNA" BASE COUNT 555 a 407 c 525 g 525 t 62 others BASE COUNT 427 a 321 c 437 g 378 t 7699 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~CAACUU UCAACAACGG AUC|UCUUGG 61 |CUCUCGC|A U|-CGAUGAA GAA|CGCA(- -GCGA-AA)U |GC-GAUAAG UA-augu|[- 121 gaauugcaga auucagugaa u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---caucg|A AUCUUU-GAA Cgc-(accuu )-g-c|gccu 241 cuu------g g(-------- ---------- ---------- -----uauu- ---)cc---- 301 --ga-gaggc ---augccug -u-uu-gagu guca--(--- ---uua---/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------u )--ugnccuc aaaucagg-u aGG----AUU 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UC AAUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-A)AG-G AU|UCCCCUA GU---AAC(U GCGA)GUG-A A-----GCGG GAAA------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------aauu uaaaaucugg 781 cagcc-(ccu gu-)--gacu gu-ccgaguu guaaucuag- agaaguguua ucc------- 841 ----gugc-- ---------- ---------- ---------- ---------- ug-ga-c-cg 901 ugua-caa-- --g-ucu-c( u-(uggaac- )a)gag-c-- ---------- --------GU 961 --|C(AUA)G |AGGG-(UGA GAAU)-CCCG UC|-uuugac acggacu-ac c-----agug 1021 cau-ugu--- -gaugcgc-u cucaac---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGAGUU GUU(----UG 1141 GGAA)UGCAG CUCAAA---- AUGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUC-- ---------- ---------- ---------- )CAU-CUAAA GCU----AAA 1381 UA-------- ---------- UUGGC-GAGA GACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAUG -AAA-AGAAC UUU(gg-aa- )AGAG-AGUU A-AACAGUAC G-UGAAAU-U 1501 GUUGA-AAG< gg---aaacg cuugaaguca ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- -------guc gcguug-gcc ggggaucaac 2221 cuu-c---uc uu-gaguugg -agc--acuu -ccug--gu- ugacgg-guc agca-|ucaa 2281 uuuug-aucg uuggauaaaa -gcgagagga auguggcauc -----(uucg -)-----gau 2341 gug-uuaua- gccuuuugu- -ugcaugcaa cg-guug-gg auugaggaac u--cagcacg 2401 c-cgca---- aggccgggau uua-uccacg ua-cg---ug cuu]------ ---------- 2461 ---------- ---------- ---------- ---------- ---------- ------agga 2521 ugcu-ggc-- --------a- -----uaaug gcuuuaaucg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUGCCC GCGAGUAU-u ugggu----( -------gca 2641 aa)------- ---------- ---a-cccg- ---------- --agUGCGUA AC(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------aag uugaga--uc ucu------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----gucgu- ----)----- ---------- -----ggaga --gcaucgac 3061 g--------- ---------- ---------- ---------- -------ccc gg-acc-aga 3121 cc-(--uuuu -)-gugac-- ggau-ccgcg g]-------- ---------U GGAGCGUGU- 3181 -AUG-UUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AA|U-AGGGC GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-AUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU CGAAUUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCUGC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-AGAA -ACUc--|-- -|-auu---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------u 3661 c-agaUUUAU -G|UGG--UA AA-GCGAAUG AUUAGAGGC- -----CUUGG GGUU--(gaa 3721 a-c)--AACC U-UAA-|CCU AUUC-UCAAA CUUUA-AAUA |UGUAAGaac -ggg--guc- 3781 (-ucuuganu -)gaccuucc g--ncg---- ---------- ---------- ---------- 3841 ---------- ---------- ----AnUg-a g|AN-UUUCU -ANN-NNNNN -NNN-NNNN( 3901 N-NNNN)NNN NNN-UGGN-G AUGCGG(NA- UGAN)CNN-- UUNGNGA--- GGUUANN--G 3961 U|GCCN-NAA U-U--UA-CG CUCAU-ca-- --------ga caccac---- -ANNNGGUGU 4021 U--AGUUCAU CUAGACA-GC AGGACGGNGG CC(AUNG-NA GUC)GGAACC CG|C(UAA)G 4081 |GAGUGU(GU NACA)AC|-- -UCACCUGCC -GANUGAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- UANGCGUGA| U|-------- --ACCCAU-- --ACCUCGC| (- -----)-gcg uugac-gANU AGGC------ 4441 --AGG|-CG- UN-GN-GG-- --------u- -can-uga-- a------GAA GCCU-----U 4501 G-GCA(GCGA -)UGNUGGG- UGA|A-ACG| G--CCUCUA- GUGC-AGA-U CUUG~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~)~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS O.grossula 9262 bp RNA RNA 01-AUG-1997 DEFINITION Omphalina grossula.. ACCESSION No information KEYWORDS No information. SOURCE Omphalina grossula. ORGANISM Omphalina grossula. REFERENCE 1 (bases 1 to 2120) AUTHORS Lutzoni,F. TITLE Phylogeny of lichen- and non lichen-forming omphalinoid mushrooms and the utility of testing for combinability among multiple data sets JOURNAL Syst. Biol. (1996) In press STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U66444 LOCUS OGU66444 2011 bp DNA PLN 01-AUG-1997 DEFINITION Omphalina grossula small subunit ribosomal RNA gene, partial sequence, internal transcribed spacers ITS1 and ITS2, complete sequence, 5.8S ribosomal RNA gene, complete sequence, large subunit ribosomal RNA gene, partial sequence. ACCESSION U66444 NID g2289053 KEYWORDS . SOURCE Omphalina grossula. ORGANISM Omphalina grossula Eukaryotae; mitochondrial eukaryotes; Fungi; Basidiomycota; Hymenomycetes; Agaricales; Tricholomataceae; Omphalina. REFERENCE 1 (bases 1 to 2011) AUTHORS Lutzoni,F. TITLE Phylogeny of lichen- and non lichen-forming omphalinoid mushrooms and the utility of testing for combinability among multiple data sets JOURNAL Syst. Biol. (1996) In press REFERENCE 2 (bases 1 to 2011) AUTHORS Lutzoni,F. TITLE Direct Submission JOURNAL Submitted (09-AUG-1996) Botany, Field Museum of Natural History, Roosevelt Road at Lake Shore Drive, Chicago, IL 60605-2496, USA FEATURES Location/Qualifiers source 1..2011 /organism="Omphalina grossula" /strain="Gulden 417/75, O" /db_xref="taxon:50976" rRNA <1..55 /product="small subunit ribosomal RNA" misc_RNA 56..211 /note="internal transcribed spacer; ITS1" rRNA 212..369 /product="5.8S ribosomal RNA" misc_RNA 370..571 /note="internal transcribed spacer; ITS2" rRNA 572..>2011 /product="large subunit ribosomal RNA" BASE COUNT 558 a 374 c 527 g 535 t 17 others BASE COUNT 439 a 314 c 441 g 388 t 7680 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~CAACUU UUAACAACGG AUC|UCUUGG 61 |CUCUCGC|A U|-CGAUGAA GAA|CGCA(- -GCGA-AA)U |GC-GAUAAG UA-augu|[- 121 gaauugcaga auucagugaa u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---caucg|A AUCUUU-GAA Cgc-(accuu )-g-c|gcuc 241 cuu------g g(-------- ---------- ---------- -----uauu- ---)cc---- 301 --ga-ggagc ---augccug -u-uu-gagu guca--(--- ---uaa---/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------u )--ugaccuc aaaucagg-u aGG----ACU 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UC AAUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-A)AG-G AU|UCCCUUA GU---AAC(U GCGA)GUG-A A-----GUGG GAAA------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------aauu uaaaaucugg 781 uaguc-(-uu au-)--ggcu gc-ccgaguu guaaucuag- agaagugcuu ucc------- 841 ----gcgc-- ---------- ---------- ---------- ---------- ug-ga-c-cg 901 ugua-caa-- --g-ucu-c( u-(uggaau- )a)gag-c-- ---------- --------GU 961 --|C(AUA)G |AGGG-(UGA GAAU)-CCCG UC|-uuugac acggacu-ac c-----agug 1021 cuucugu--- -gaugcgc-u cucaaa---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGAGUU GUU(----UG 1141 GGAA)UGCAG CUCAAA---- AUGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUC-- ---------- ---------- ---------- )CAU-CUAAA GCU----AAA 1381 UA-------- ---------- UUGGC-GAGA GACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAUG -AAA-AGAAC UUU(gg-aa- )AGAG-AGUU A-AACAGUAC G-UGAAAU-U 1501 GUUAA-AAG< gg---aaacg cuugaaguca ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- -------guc gcguug-gca agagaucaac 2221 cua-g---ca uu-uauuugc uggguguauu gucug--gu- caaugg-guc aaca-|ucaa 2281 uuuug-acug ccggauaaag -uccaaggga auguggcauc -----(uucg -)-----gau 2341 gug-uuaua- gccuuuggu- -uguauacgg ug-guug-gg auugaggaac u--cagcaug 2401 c-cgca---- aggccggggc cuu-uuggcu ca-cg---u- ---------- ---------- 2461 ---------- ---accaugc uu-------- ---------- ---------- ------agga 2521 uguu-ggc-- --------a- -----uaaug gcuuuaaucg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUGCCC GCGAGUGU-u ugggu----( -------gga 2641 aa)------- ---------- ---accccg- ---------- --agCGCGUA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------aag uugaga--ac ccu------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----gucgu- ----)----- ---------- -----ggggu --gcaucgau 3061 g--------- ---------- ---------- ---------- -------ccc gg-acc-aga 3121 cc-(--uuuu -)-gugac-- ggau-ccgcg g]-------- ---------U AGAGCGUGU- 3181 -AUG-UUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AA|U-AGGGU GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-AUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU CGAAUUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCUGC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-AGAA -ACUc--|-- -|-auua--- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------u 3661 c-agaUUUAU -G|UGG--UA AA-GCGAAUG AUUAGAGGC- -----CUUGG GGUU--(gaa 3721 a-c)--AACC U-UAA-|CCU AUUC-UCAAA CUUUA-AAUA |UGUAAGaac -gagccguc- 3781 (-ucuugacu g)gaccgcuc g--gug---- ---------- ---------- ---------- 3841 ---------- ---------- ----AUUg-a g|AG-UUUCU -AGU-GGGCC -AUU-UUUG( 3901 N-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- AACGCGA--- NGUNANG--G 3961 U|GCCG-GAA U-U--NA-CA CUCAU-ca-- --------ga caccac---- -AAAAGGUGU 4021 U--GGUUCAU CUAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGNAUC CG|C(UAA)G 4081 |GNGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAACU AGC|CC-UGA AAA--UGGNU 4141 G--GCG-CU- UAAGUGUGA| U|-------- --ACCCAU-- --ACCUCGC| (- -----)-gcg cugac-gANU AGGC------ 4441 --AGG|-CG- UN-GA-GG-- --------u- -can-nga-- n------GAA GCCU-----A 4501 G-GCA(G~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~)~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) ~~~~~~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS P.griseopa 9262 bp RNA RNA 01-AUG-1997 DEFINITION Phaeotellus griseopallidus.; . ACCESSION U66436 KEYWORDS . SOURCE Phaeotellus griseopallidus. ORGANISM Phaeotellus griseopallidus. REFERENCE 1 (bases 1 to 2050) AUTHORS Lutzoni,F. TITLE multiple data sets Phylogeny of lichen- and non lichen-forming omphalinoid mushrooms and the utility of testing for combinability among JOURNAL Syst. Biol. (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 2050) AUTHORS Lutzoni,F. TITLE Direct Submission JOURNAL Submitted (09-AUG-1996) Botany, Field Museum of Natural History, Roosevelt Road at Lake Shore Drive, Chicago, IL 60605-2496, USA STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U66436 BASE COUNT 440 a 328 c 448 g 375 t 7671 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~CAACUU UCAACAACGG AUC|UCUUGG 61 |CUCUCGC|A U|-CGAUGAA GAA|CGCA(- -GCGA-AA)U |GC-GAUAAG UA-augu|[- 121 gaauugcaga auucagugaa u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---caucg|A AUCUUU-GAA Cgc-(accuu )-g-c|gccc 241 cuu------g g(-------- ---------- ---------- -----uauu- ---)cc---- 301 --ga-ggggc ---augccug -u-uu-gagu guca--(--- ---uua---/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------u )--ugaccuc aaaucagg-u aGG----AUU 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UC AAUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-A)AG-G AU|UCCCCUA GU---AAC(U GCGA)GUG-A A-----GCGG GAAA------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------aauu uaaaaucugg 781 cggcc-(ccu gu-)--gacu gu-ccgaguu guaaucuag- agaaguguua ucc------- 841 ----gugc-- ---------- ---------- ---------- ---------- cg-ga-c-cg 901 ugua-caa-- --g-ucu-c( u-(uggaau- )a)gag-c-- ---------- --------GU 961 --|C(AUA)G |AGGG-(UGA GAAU)-CCCG UC|-uuugac acggacu-ac c-----ggug 1021 cau-ugu--- -gaugcgc-u cucaac---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGAGUU GUU(----UG 1141 GGAA)UGCAG CUCAAA---- AUGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUC-- ---------- ---------- ---------- )CAU-CUAAA GCU----AAA 1381 UA-------- ---------- UUGGC-GAGA GACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAUG -AAA-AGAAC UUU(gg-aa- )AGAG-AGUU A-AACAGUAC G-UGAAAU-U 1501 GUUGA-AAG< gg---aaacg cuugaaguca ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- -------guc gcgucg-ucu ggggaucaac 2221 cuu-c--(uc uug---agu- uggagcacuu -ccca--gu- ugacgg-guc agca-|ucaa 2281 uuuug-auug uuggauaaaa -gcuggagga auguggcauc -----(uccg -)-----gau 2341 guguuauag- ccucuug-c- -cgcaugcaa ca-guug-gg auugaggaac u--cagcaug 2401 c-cg-----a aaggccgggg cucgcccacg ----uacgug cuu]------ ---------- 2461 ---------- ---------- ---------- ---------- ---------- ------agga 2521 ugcu-ggc-- --------a- -----uaaug gcuuuaaucg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUGCCC GCGAGUGU-u ugggu----( -------gaa 2641 aa)------- ---------- ---a-cccg- ---------- --agCGCGUA AC(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------aag uugaga--uc ucu------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----gucau- ----)----- ---------- -----ggaga --gcaucgac 3061 g--------- ---------- ---------- ---------- -------ccc ag-acc-aga 3121 cc-(--uuuu -)-gugac-- ggau-cugcg g]-------- ---------U CGAGCGUGU- 3181 -AUG-UUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AA|U-AGGGC GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-AUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU CGAAUUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCUGC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-AGAA -ACUc--|-- -|-aua---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------u 3661 c-agaUUUAU -G|UGG--UA AA-GCGAAUG AUUAGAGGC- -----CUUGG GGUU--(gaa 3721 a-c)--AACC U-UAA-|CCU AUUC-UCAAA CUUUA-AAUA |UGUAAGaac -gggggguc- 3781 (-ucuugauu g)gaccuucc g--gcg---- ---------- ---------- ---------- 3841 ---------- ---------- ----AUUg-a g|AG-UUUCU -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- AACGCGA--- GGUUAAG--G 3961 U|GCCG-GAA U-U--CA-CG CUCAU-ca-- --------ga caccac---- -AAAAGGUGU 4021 U--AGUUCAU CUAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- UAAGCGUGA| U|-------- --ACCCAU-- --ACCUCGC| (- -----)-gcg uugac-gAGU AGGC------ 4441 --AGG|-CG- UG-GA-GG-- --------u- -cag-uga-- a------GAA GCCU-----U 4501 G-GCA(GUGA -)U~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~)~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ (~~~~~~~~) ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~-~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- (~~~~~)~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS R.mellea 9262 bp RNA RNA 01-AUG-1997 DEFINITION Rickenella mellea.; . ACCESSION U66438 KEYWORDS . SOURCE Rickenella mellea. ORGANISM Rickenella mellea. REFERENCE 1 (bases 1 to 2081) AUTHORS Lutzoni,F. TITLE mushrooms and the utility of testing for combinability among multiple data sets Phylogeny of lichen- and non lichen-forming omphalinoid JOURNAL Syst. Biol. (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 2081) AUTHORS Lutzoni,F. TITLE Direct Submission JOURNAL Submitted (09-AUG-1996) Botany, Field Museum of Natural History, Roosevelt Road at Lake Shore Drive, Chicago, IL 60605-2496, USA STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U66438 BASE COUNT 422 a 331 c 448 g 377 t 7684 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~CAACUU UCAACAACGG AUC|UCUUGG 61 |CUCUCGC|A U|-CGAUGAA GAA|CGCA(- -GCGA-AA)U |GC-GAUAAG UA-augu|[- 121 gaauugcaga auucagugaa u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---caucg|A AUCUUU-GAA Cgc-(accuu )-g-c|gcuc 241 cuu------g g(-------- ---------- ---------- -----uauu- ---)cc---- 301 --ga-ggagc ---augccug -u-uu-gagu guca--(--- ---uga---/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------c )--ugaccuc aaaucagg-u aGG----ACU 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UC AAUAAG-C-G N-NNNNNN-- --NNNNNCU( 541 AAC-A)AG-G AU|UCCCCUA GU---AAC(U GCGA)GUG-A A-----GCGG GAAA------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------aauu uaaaaucugg 781 cggu--(--u au-)---gcc gy-ccgaguu guaaucugg- agaagcguuu ucc------- 841 ----gugu-- ---------- ---------- ---------- ---------- ug-ga-c-cg 901 ugua-caa-- --g-ucu-c( u-(uggaac- )a)gag-c-- ---------- --------GU 961 --|C(AUA)G |AGGG-(UGA GAAU)-CCCG UC|-uuugac acggacu-ac c-----aaug 1021 cuu-ugu--- -gauacgc-u cucaaa---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGAGUU GUU(----UG 1141 GGAA)UGCAG CUCAAA---- AUGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUGC-- ---------- ---------- ---------- )CAU-CUAAA GCU----AAA 1381 UA-------- ---------- UUGGC-GAGA GACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAUG -AAA-AGCAC UUU(gg-aa- )AGAG-AGUU A-AACAGUAC G-UGAAAU-U 1501 GUUGA-AAG< gg---aaacg cuugaaguca ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- -------guc gcguug-ucu gggacucagc 2221 cuugc--(uu -cu---gca- ugguguauuu -ccug--gu- uaacgg-gcc aaca-|ucga 2281 uuuug-gucg guggauaaag -ucgagagga auguggcacc -----(uucg -)-----ggu 2341 gug-uuaua- gccucuugu- -cggaugcau cg-acug-gg aucgaggauc g--cagcacg 2401 c-c----uuu uuggccgggg uucgcccacg ua---acgug cuu]------ ---------- 2461 ---------- ---------- ---------- ---------- ---------- ------agga 2521 uguu-ggc-- --------a- -----uaaug gcunuaaucg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUGCCC GCGAGUGU-u agggu----( -------gga 2641 aa)------- ---------- ---a-cccu- ---------- --ugCGCGUA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------aag uuggga--cc ucu------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----gucau- ----)----- ---------- -----ggggg --gcaccgac 3061 g--------- ---------- ---------- ---------- -------ccc gg-ccu-uga 3121 ac-(--uucu -)-gugac-- ggcg-ccgcg g]-------- ---------U AGAGCGUGU- 3181 -AUG-UUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AA|U-AGGGC GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-AUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU CAAAUUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCUGC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-AGAA -ACUc--|-- -|-gua---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------u 3661 c-agaUUUAU -G|UGG--UA AA-GCGAAUG AUUAGAGGC- -----CUUGG GGUU--(gaa 3721 a-c)--AACC U-UAA-|CCU AUUC-UCAAA CUUUA-AAUA |UGUAAGaac -aagccguc- 3781 (-ucuuaguu g)gaccgcuu g--gcg---- ---------- ---------- ---------- 3841 ---------- ---------- ----AUUg-a g|AG-UUUCU -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- AACGCGA--- GGUUAAG--G 3961 U|GCCG-GAA U-A--CA-CG CUCAU-ca-- --------ga caccac---- -AAAAGGUGU 4021 U--AGUUCAU CUAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- CAAGCGUGU| U|-------- --ACCCAU-- --ACCUCGC| (- -----)-gcg cugac-gAGU AGGC------ 4441 --AGG|-CG- UG-GA-GG-- --------u- -cag-uga-- a------GAA GCCU-----U 4501 G-GCA(GUAA -)UGCU~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~)~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ (~~~~~~~~) ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~-~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- (~~~~~)~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Tri.matsut 9262 bp RNA RNA 21-OCT-1996 DEFINITION Tricholoma matsutake.; . ACCESSION U62964 KEYWORDS . SOURCE Tricholoma matsutake. ORGANISM Tricholoma matsutake. REFERENCE 1 (sites) AUTHORS Hwang,S. and Kim,J. TITLE the Mushroom Tricholoma matsutake Nucleotide Sequence Analysis of the 5S Ribosomal RNA Genes of JOURNAL J. Microbiol. 33 (2), 136-141 (1995) STANDARD No information REFERENCE 2 (bases 1 to 4150) AUTHORS Hwang,S. and Kim,J. TITLE Large subunit, 5.8S ribosomal DNA and internal transcribed sequences (ITS1 and ITS2) of Tricholoma matsutake, a symbiont of Pinus densiflora JOURNAL Unpublished STANDARD No information REFERENCE 3 (bases 1 to 4150) AUTHORS Hwang,S. TITLE Direct Submission JOURNAL Submitted (04-JUL-1996) S. Hwang, Kyungpook National University, Department of Microbiology, 1370 Sankyuk-Dong, Buk-Ku, Taegu, 702-701, Korea STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U62964 BASE COUNT 949 a 725 c 993 g 901 t 5694 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~CAACUU UCAACAACGG AUC|UCUUGG 61 |CUCUCGC|A U|-CGAUGAA GAA|CGCA(- -GCGA-AA)U |GC-GAUAAG UA-augu|[- 121 gaauugcaga auucagugaa u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---caucg|A AUCUUU-GAA Cgc-(accuu )-g-c|gcuc 241 cuu------g g(-------- ---------- ---------- -----uauu- ---)cc---- 301 --ga-ggagc ---augccug -u-uu-gagu guca--(--- ---ug----/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --------uu )--ugaccuc aaaucagg-u aGG----ACU 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UC AAUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-A)AG-G AU|UCCCCUA GU---AAC(U GCGA)GUG-A A-----GCGG GAAA------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------aauu uaaaaucuga 781 ugguc-(uuu au-)--ggcc uu-ccgaguu guaaucuag- agaagugcua ucc------- 841 ----gcgc-- ---------- ---------- ---------- ---------- ug-ga-c-cg 901 ugua-caa-- --g-ucu-c( c-(uggaac- )g)gag-c-- ---------- --------GU 961 --|C(AUA)G |AGGG-(UGA GAAU)-CCCG UC|-uuugcc acggacu-ac c-----aggg 1021 cuuaugu--- -gaugcgc-u cucaaa---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGAGUU GUU(----UG 1141 GGAA)UGCAG CUCUAA---- AUGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUC-- ---------- ---------- ---------- )CAU-CUAAA GCU----AAA 1381 UA-------- ---------- UUGGC-GAGA GACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 ---AAAGAUG -AAA-AGAAC UUU(gg-aa- )AGAG-AGUU A-AACAGUAC G-UGAAAU-U 1501 GUUGA-AAG< gg---aaacg cuugaaguca ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- -------guc gcguuu-acc aggaaucagc 2221 cuugc--(uu uuu)--gcu- uggcgcacuu -ucug--gu- uaacgg-guc agca-|ucaa 2281 uuuug-aucg guggauaaag -gucaggaga agguggcauc -----(uucg -)-----gau 2341 guguuuaua- gcucuuggu- -cgcauacau cg-guug-gg auugaggaac u--cagcacg 2401 c-cgcacggg gugu-uuaca cac------- --guuacgug cuu]------ ---------- 2461 ---------- ---------- ---------- ---------- ---------- ------agga 2521 uguu-ggc-- --------a- -----uaaug gcuuuaaucg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUGCAC GCGAGU-U-- ugggu----( -------gga 2641 aa)------- ---------- ---a-cc-g- ---------- --agCGCGUA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------aaa uugaga--uc cu-------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----gucgu- ----)----- ---------- -----gggga --gcaucaau 3061 g--------- ---------- ---------- ---------- -------cc- gg-acc-aga 3121 ac-(--uuuu -)-gugac-- gguu-ccgcg g]-------- ---------U UGAGC-UGU- 3181 -AUG-CUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AA|U-AGGGU GAAGCCAGAG 3241 (GAAA----- -----)CUCU G-U-GGAGGC UCG-UA---G CG-AUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU CAAAUUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCUGC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-AGAA -ACUc--|-- -|-aua---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------u 3661 c-agaUUUAU -G|UGG--UA AA-GCGAAUG AUUAGAGGC- -----CUUGG GGUU--(gca 3721 a-c)--AACC U-UAA-|CCU AUUC-UCAAA CUUUA-AAUA |UGUAAGaac -gggucguc- 3781 (-ucuugauu g)gaccuccc g--gcg---- ---------- ---------- ---------- 3841 ---------- ---------- ----AUUg-a g|AG-UUUCU -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- AACGCGA--- GGUUAAG--G 3961 U|GCCG-GAA U-U--CA-CG CUCAU-ca-- --------ga caccac---- -AAAAGGUGU 4021 U--AGUUCAU CUAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAACU AGC|CC-UGA AAA--UG-AU 4141 G--GCG-CU- UAAGCGUGA| U|-------- --ACCCAU-- --ACCUCGC| (- -----)-gcg cugac-gAGU AGGC------ 4441 --AGG|-CG- UG-GA-GG-- --------u- -cag-uga-- a------GAA GCCU-----U 4501 G-GCA(GUGA -)UGCUGGG- UGA|A-ACG| G--CCUCUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAG- U(gagaa--- ---------- ---------- ---------- 4621 --)CCUUGAA |GACUGAAGU G-GAG|AAAG GUU|CCAUGG UA-ACA(-GC AGU)UG|GAC 4681 AUGGGUCAGU |-CGA-UCCU AAGA------ -------<-g auaggg(-aa gc)ucc--gu 4741 u---ucaaag u-gcacg--- ---------- ---------- (auucuu--) ---------- 4801 --------cg ugccgccua- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA AGGGA-AU-C CGG(UUAAAA UU-)CCGGA| -AC----cag gaugugg-gu 4981 uu[uua---- ---------- ---------- ---------- -----acg(- -gcaa--)cg 5041 u--------- ---------- ---------- ---------- -----aa-a] uga-acuugg 5101 agac-----g cug--gcagg gg-c-cccg- -GG-AAGA(G UUAUCUUU-) UCUCCU-|UA 5161 A-cagucu-- ---------- aua|a---cc cugA--AAUC ----AA(UUU GU-)UUGGA- 5221 GC-ua-ggg- uucaa----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----uggc-u gGU-----AG 5341 AGCACAACA( --ccuc--)U GUUGUGUC-c ggugcg---u -ccuug--ac aguC-CUUGA 5401 AAA-uccaag -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaaugaa-- ---------- ----uaauuu --uc-aca-- cc-ugGUCGU 5581 A|CU--CAUA ACC(GCAGCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| AGUUG-||A- 5641 UA-G--AACA AU-GUAG-AU A-AGGGAAGU CGGCAA-AAU -AGAUCCGUA AC(UUCG)GG 5701 AAAAGGAUU| GGCUCUAAG- ---------- -(-----)---- -------CUU AGAACU|G(- --GUA)CGGA 6601 CAAGGGGAAU C|-UGACUGU CU(AAUUA)A AACAUAGCAU UGCG|A--UG G|CCA(---g 6661 aaag)UGGug ugaccugcgg caU-GUCGAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU AUCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUUU G---ACA-UU |GUGAAAAGA CAUAGAGGGU 7021 GUAGCAUAAG UGGGAGC--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -UUCG)---- 7141 ---------G C-GCCGUUGA AA-UACCACU |ACCUUUAU- -UGUCU-UUU UACUUAU--- 7201 ------(--- --)------| --a GACAU-UGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAAAGAUA AC-)GCAG-G U|G|U|CCU- AAGGG-GGAC |UCAUC-GAG 7621 -A(ACA---- GAAA)UCUCG AGUAGA|AC( A|A--AAGG) GUAAAAG-UC C-CCUUGAUU 7681 -UUGAUUU(u c--agugu-- )GAAUACAAA CCAU(-GAAA )GUGUGG|CC --UAU|CGAu 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -ucC-CUC(- -GGAA-U--U U---)----- ---------- 7861 -----GAG|G CUAGAG-GUG CC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UA C-CGAAG(CA -GA-)AUUCG GUAA-GCGU| UGGAU(UGUU C)ACCCACUA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGG-a<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->-guGU UA-UC-GU-A AUAGUAAUUG AACU(UAGUA 8281 C(GAGA)GGA AC-)CGUUCA U|UCAGAUAU UUGGUAUUUG CGC|-CUGUC C(GAUC)GGG 8341 CAAUGGCGCG A-AGCUAUC- AU-CUGC--U GGAUUAUGGC U(GAACGCCU C-U-A)AGCC 8401 AGAAUCCG-U GCUA--G-AA -AUG--AUGA U<--guuggu cccgcaca-- -uuugacuug 8461 aguuaaaau- --agagcuuu g-cucugug- ---aaccaaa ucaggugg-- ---gcuuggg 8521 cgucuuugc- ggaaau-gc- uuug-gcggu uu-gccuacg aauuguaauc auaaua---- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------u gggcggggg> --|------( ---)------ 8701 ----ugaauc |cuuug(-ca gacga)cu-u gaa-u---gg g-a|acgggg uacuguaagc 8761 gg-uagagua gc----(cuu -guu------ ---------- ---------- ---------- 8821 ----)----g cuacgauc-c gc-|ugaggu u|aag--ccc u--ugu-u-c uaa-aga-uu 8881 ugu~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (7)-Aphyll 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS M.vernalis 9262 bp RNA RNA 01-AUG-1997 DEFINITION Multiclavula vernalis.; . ACCESSION U66439 KEYWORDS . SOURCE Multiclavula vernalis. ORGANISM Multiclavula vernalis. REFERENCE 1 (bases 1 to 1758) AUTHORS Lutzoni,F. TITLE multiple data sets Phylogeny of lichen- and non lichen-forming omphalinoid mushrooms and the utility of testing for combinability among JOURNAL Syst. Biol. (1996) In press STANDARD No information REFERENCE 2 (bases 1 to 1758) AUTHORS Lutzoni,F. TITLE Direct Submission JOURNAL Submitted (09-AUG-1996) Botany, Field Museum of Natural History, Roosevelt Road at Lake Shore Drive, Chicago, IL 60605-2496, USA STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U66439 BASE COUNT 352 a 260 c 347 g 314 t 7989 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~CAACUU UUAACAACGG AUC|UCUUGG 61 |CUCUCGC|A U|-CGAUGAA GAA|CGCA(- -GCGA-AA)U |GC-GAUACG UA-augu|[- 121 gaauugcaga auucagugaa u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---caucg|A AUCUUU-GAA Cgc-(accuu )-g-c|gcuc 241 cuu------g g(-------- ---------- ---------- -----uauu- ---)cc---- 301 --ga-ggagc ---acgccug -u-uc-gagu gucg--(--- ---ug----/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------u )--ugaccuc gaaucagg-u gGG----ACU 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UC AAUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-A)AG-G AU|UCCCCUA GU---AAC(G GCGA)GUG-A A-----GCGG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------aauu uaaaaucugg 781 caguc-(--u uc-)--gauu gu-ccgaguu guaaucuag- agaagcguuu ucc------- 841 ----gcgu-- ---------- ---------- ---------- ---------- ug-ga-c-ug 901 ugua-caa-- --g-uuu-c( c-(uggauac )g)gaa-c-- ---------- --------AU 961 --|C(AGA)G |AGGG-(UGA GAAU)-CCCG UC|-cuugac acagacu-cc c-----aaug 1021 cu-cugu--- -gaugcgc-u cucgac---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGAGUU GUU(----UG 1141 GGAA)UGCAG CUCAAA---- AUGGGA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUC-- ---------- ---------- ---------- )CUU-CUAAA GCU----AAA 1381 UA-------- ---------- UUGGC-GAGA GACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAUG -AAA-AGCAC UUU(gg-aa- )AGAG-AGUU A-AACAGUAC G-UGAAAU-U 1501 GUUAA-AAG< gg---aaacg cuugaaguca ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- -------guc acgucu-gcu uggacucagc 2221 cuuug--(cu ucu)--gca- uggugcacuu -ccuc--gu- agacgg-gcc agcg-|ucca 2281 uguug-ccug cuggaaaagg -aucaaagga auguggcuuc -----(uccg -)-----gga 2341 gug-uuaua- gccuuuggu- -cguauacag cg-gaug-au auggaguggu a--cagcacg 2401 ---------- -uuc-uucg- ---------- -------gug cuu------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- --------g- 2521 ugcu-ggc-- --------a- -----uaaug gcuuuaaacg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUGUCU GCGAGUGU-u ugggu----( -------gga 2641 aa)------- ---------- ---a-cccg- ---------- --agCGCGUA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------uag cuggga--ac ccc------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----gcaa-- ----)----- ---------- -----gggag --gcaccggc 3061 g--------- ---------- ---------- ---------- -------ccc cg-agc-uga 3121 cc-(--uucu -)-gugac-- gcau-cggag g]-------- ---------U AGAGCAUAU- 3181 -AUG-UUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AA|U-AGGGC GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-AUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU CAAAUUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCUGC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-AGAA -ACUc--|-- -|-gua---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------u 3661 c-aguUUUAU -G|UGG--UA AA-GCGAAUG AUUAGAGAC- -----CUUGG GGAU--(gaa 3721 a-c)--AUCC U-UAA-|UCU AUUC-UCAAA CUUUA-AAUA |UGUAAGcuc -aggaugcuu 3781 (-gcuuaauu g)aagcaccu g----u-a-- ---------- ---------- ---------- 3841 ---------- ---------- ----AAUg-a g|AG-UUUCU -AGU-G~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~-- ~~~~~~~--~ 3961 ~|~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~(~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~-- -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~)~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ (~~~~~~~~) ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~-~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- (~~~~~)~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS G.australe 9262 bp RNA RNA 11-JAN-191 DEFINITION Ganoderma australe. ACCESSION No information KEYWORDS No information. SOURCE Ganoderma australe. ORGANISM Ganoderma australe. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X78780 ID GA25S0 standard; DNA; FUN; 1464 BP. XX AC X78780; XX DT 19-APR-1994 (Rel. 39, Created) DT 19-APR-1994 (Rel. 39, Last updated, Version 1) XX DE G.australe 0705 25s rDNA XX KW 25S ribosomal DNA. XX OS Ganoderma australe OC Eukaryota; Plantae; Thallobionta; Basidiomycotina; Hymenomycetes; OC Aphyllophorales; Ganodermataceae. XX RN [1] RA Moncalvo J.M., Hseu R.S., Wang H.H.; RT "Species identification and phylogenetic relationships in RT Ganoderma inferred from ribosomal DNA sequence data"; RL Unpublished. XX RN [2] RP 1-1464 RA Moncalvo J.; RT ; RL Submitted (07-APR-1994) to the EMBL/GenBank/DDBJ databases. RL J. Moncalvo, National Taiwan University, Applied Microbiology RL Laboratory, Agricultural Chemistry Dept, Taipei, Taiwan, PROC XX FH Key Location/Qualifiers FH FT rRNA 1..1464 FT /note="25s rDNA, 5' end" FT source 1..1464 FT /organism="Ganoderma australe" FT /strain="0705" XX SQ Sequence 1464 BP; 397 A; 307 C; 424 G; 328 T; 8 other; BASE COUNT 397 a 307 c 424 g 328 t 7806 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~ugaccuc )--ugaccuc aaaucagg-u aGG----ACU 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UC AAUAAN-C-G G-AGGAAA-- --AGAAACU( 541 AAC-A)AG-G AU|UCCCCUA GU---AAC(U GCGA)GUG-A A-----NNGG GAAA------ 601 ---------- ---------- ---------- ---------- -AGNNNA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------aauu uaaaaucugg 781 cgguc-(uuu ---)--ggcc gu-ccgaguu guagucugg- agaagugcuu ucc------- 841 ----gcgc-- ---------- ---------- ---------- ---------- ug-ga-c-cg 901 ugua-uaa-- --g-ucu-c( u-(uggaac- )a)gag-c-- ---------- --------GU 961 --|C(AUA)G |AGGG-(UGA GAAU)-CCCG UC|-uuugac acg-gacuac c-----agug 1021 c-uuugu--- -gaugcgc-u cucaaa---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGAGUU GUU(----UG 1141 GGAA)UGCAG CUCAAA---- auGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUGAAUUC-- ---------- ---------- ---------- )CAU-CUAAA GCU----AAA 1381 UA-------- ---------- UUGGC-GAGA GACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAUG -AAA-AGCAC UUU(gg-aa- )AGAG-AGUU A-AACAGUAC G-UGAAAU-U 1501 GCUGA-AAG< gg---aaacg cuugaaguca gucgcguu-g uccgg----- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- -[a--acuca 2221 gccuugc-(- uuuu-)-gc- uuggugca-- -cuuuccgga ugacgg-guc agca-|ucga 2281 uuuug-accg ucggaaaagg -gcuggagua auguggcacc -----(ucuc -)-----ggu 2341 gugu-uauag acucuggu-- -cgcauacgg cg-guug-gg aucgaggaac g--cagcgcg 2401 c-cgcaa-gg c-ag-ggg-- --uucg--cc cacuuucgcg cuu]------ ---------- 2461 ---------- ---------- ---------- ---------- ---------- ------agga 2521 ugcu-ggc-- --------a- -----uaaug gcuuuaaacg >acaacgACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUACCU GCGAGUGU-u ugggu----( -------gga 2641 aa)------- ---------- ---a-cccg- ---------- --agCGCGUA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------aag uugaga--uc ccu------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----gucgu- ----)----- ---------- -----gggga --gcaucgac 3061 g--------- ---------- ---------- ---------- -------ccc gg-acc-aga 3121 cg-(--uucu -)-cugac-- ggau-ccgcg g]-------- ---------U AGAGCAUGU- 3181 -AUG-UUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AA|U-AGGGU GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-AUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU CAAAUUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCUGC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-AGAA -ACUc--|-- -|-auua--- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------u 3661 c-agaUUUAU -G|UGG--UA AA-GCGAAUG AUUAGAGGC- -----CUUGG GGUU--(gaa 3721 a-c)--AACC U-UAA-|CCU AUUC-UCAAA CUUUA-AAUA |UGUAAGaac -gagccguc- 3781 (-gcuugauu g)gaccgcuc ggcg------ ---------- ---------- ---------- 3841 ---------- ---------- ----AUUg-a g|AG-UUUCU -AGU-GGGCC -Ann-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- AACGCGA--- GGUUAAG--G 3961 U|GCCG-GAA U-A--CA-CG CUCAU-ca-- --------ga caccac---- -AAAAGGUGU 4021 U--AGUUCAU CUAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- CAAGCGUGU| U|-------- --ACCCAU-- --ACCUCGC| (- -----)-gcg cugac-gAGU AGGC------ 4441 --AGG|-CG- UG-GA-GG-- --------u- -cag-uga-- a------GAA GCCU-----A 4501 G-GCA(GUAA -)UGCUGGG- UGA|A-ACG| G--CCUCUA~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~)~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ (~~~~~~~~) ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~-~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- (~~~~~)~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS G.boninens 9262 bp RNA RNA 11-JAN-191 DEFINITION Ganoderma boninense. ACCESSION No information KEYWORDS No information. SOURCE Ganoderma boninense. ORGANISM Ganoderma boninense. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X78777 ID GBRS25S standard; DNA; FUN; 1464 BP. XX AC X78777; XX DT 19-APR-1994 (Rel. 39, Created) DT 19-APR-1994 (Rel. 39, Last updated, Version 1) XX DE G.boninense RS 25s rDNA XX KW 25S ribosomal DNA. XX OS Ganoderma boninense OC Eukaryota; Plantae; Thallobionta; Basidiomycotina; Hymenomycetes; OC Aphyllophorales; Ganodermataceae. XX RN [1] RA Moncalvo J.M., Hseu R.S., Wang H.H.; RT "Species identification and phylogenetic relationships in RT Ganoderma inferred from ribosomal DNA sequence data"; RL Unpublished. XX RN [2] RP 1-1464 RA Moncalvo J.; RT ; RL Submitted (07-APR-1994) to the EMBL/GenBank/DDBJ databases. RL J. Moncalvo, National Taiwan University, Applied Microbiology RL Laboratory, Agricultural Chemistry Dept, Taipei, Taiwan, PROC XX FH Key Location/Qualifiers FH FT rRNA 1..1464 FT /note="25s rDNA, 5' end" FT source 1..1464 FT /organism="Ganoderma boninense" FT /strain="RS" XX SQ Sequence 1464 BP; 396 A; 309 C; 425 G; 330 T; 4 other; BASE COUNT 396 a 309 c 425 g 330 t 7802 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~ugaccuc )--ugaccuc aaaucagg-u aGG----ACU 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UC AAUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-A)AG-G AU|UCCCCUA GU---AAC(U GCGA)GUG-A A-----GCGG GAAA------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------aauu uaaaaucugg 781 cgguc-(uuu ---)--ggcc gu-ccgaguu guagucugg- agaagugcuu ucc------- 841 ----gcgc-- ---------- ---------- ---------- ---------- ug-ga-c-cg 901 ugua-uaa-- --g-ucu-c( u-(uggaac- )a)gag-c-- ---------- --------GU 961 --|C(AUA)G |AGGG-(UGA GAAU)-CCCG UC|-uuugac acg-gacuac c-----agug 1021 c-uuugu--- -gaugcgc-u cucaaa---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGAGUU GUU(----UG 1141 GGAA)UGCAG CUCAAA---- auGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUGAAUUC-- ---------- ---------- ---------- )CAU-CUAAA GCU----AAA 1381 UA-------- ---------- UUGGC-GAGA GACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAUG -AAA-AGCAC UUU(gg-aa- )AGAG-AGUU A-AACAGUAC G-UGAAAU-U 1501 GCUGA-AAG< gg---aaacg cuugaaguca gucgcguu-g uccgg----- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- -[a--acuca 2221 gccuugc-(- uuuc-)-gc- uuggugca-- -cuuuccgga ugacgg-guc agca-|ucga 2281 uuuug-accg ucggaaaagg -gcuggagua auguggcacc -----(ucuc -)-----ggu 2341 gugu-uauag acucuggu-- -cgcauacgg cg-guug-gg aucgaggaac g--cagcgcg 2401 c-cgcaa-gg c-ag-ggg-- --uucg--cc cacuuucgcg cuu]------ ---------- 2461 ---------- ---------- ---------- ---------- ---------- ------agga 2521 ugcu-ggc-- --------a- -----uaaug gcuuuaaacg >acaacgACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUACCU GCGAGUGU-u ugggu----( -------gga 2641 aa)------- ---------- ---a-cccg- ---------- --agCGCGUA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------aag uugaga--uc ccu------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----gucgu- ----)----- ---------- -----gggga --gcaucgac 3061 g--------- ---------- ---------- ---------- -------ccc gg-acc-uga 3121 cg-(--uucu -)-cugac-- ggau-ccgcg g]-------- ---------U AGAGCAUGU- 3181 -AUG-UUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AA|U-AGGGU GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-AUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU CAAAUUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCUGC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-AGAA -ACUc--|-- -|-auua--- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------u 3661 c-agaUUUAU -G|UGG--UA AA-GCGAAUG AUUAGAGGC- -----CUUGG GGUU--(gaa 3721 a-c)--AACC U-UAA-|CCU AUUC-UCAAA CUUUA-AAUA |UGUAAGaac -gagccguc- 3781 (-gcuugauu g)gaccgcuc ggcg------ ---------- ---------- ---------- 3841 ---------- ---------- ----AUUg-a n|AG-UUUCU -AGU-GGGCn -Ann-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- AACGCGA--- GGUUAAG--G 3961 U|GCCG-GAA U-A--CA-CG CUCAU-ca-- --------ga caccac---- -AAAAGGUGU 4021 U--AGUUCAU CUAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- CAAGCGUGU| U|-------- --ACCCAU-- --ACCUCGC| (- -----)-gcg cugac-gAGU AGGC------ 4441 --AGG|-CG- UG-GA-GG-- --------u- -cag-uga-- a------GAA GCCU-----A 4501 G-GCA(GUAA -)UGCUGGG- UGA|A-ACG| G--CCUCUA~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~)~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ (~~~~~~~~) ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~-~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- (~~~~~)~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS G.lucidum 9262 bp RNA RNA 11-JAN-191 DEFINITION Ganoderma lucidum. ACCESSION No information KEYWORDS No information. SOURCE Ganoderma lucidum. ORGANISM Ganoderma lucidum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X78776 ID GLRZ25S standard; DNA; FUN; 1464 BP. XX AC X78776; XX DT 19-APR-1994 (Rel. 39, Created) DT 19-APR-1994 (Rel. 39, Last updated, Version 1) XX DE G.lucidum RZ 25s rDNA XX KW 25S ribosomal DNA. XX OS Ganoderma lucidum OC Eukaryota; Plantae; Thallobionta; Basidiomycotina; Hymenomycetes; OC Aphyllophorales; Ganodermataceae. XX RN [1] RA Moncalvo J.M., Hseu R.S., Wang H.H.; RT "Species identification and phylogenetic relationships in RT Ganoderma inferred from ribosomal DNA sequence data"; RL Unpublished. XX RN [2] RP 1-1464 RA Moncalvo J.; RT ; RL Submitted (07-APR-1994) to the EMBL/GenBank/DDBJ databases. RL J. Moncalvo, National Taiwan University, Applied Microbiology RL Laboratory, Agricultural Chemistry Dept, Taipei, Taiwan, PROC XX FH Key Location/Qualifiers FH FT rRNA 1..1464 FT /note="25s rDNA, 5' end" FT source 1..1464 FT /organism="Ganoderma lucidum" FT /strain="RZ" XX SQ Sequence 1464 BP; 397 A; 311 C; 426 G; 330 T; 0 other; BASE COUNT 397 a 311 c 426 g 330 t 7798 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~ugaccuc )--ugaccuc aaaucagg-u aGG----ACU 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UC AAUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-A)AG-G AU|UCCCCUA GU---AAC(U GCGA)GUG-A A-----GCGG GAAA------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------aauu uaaaaucugg 781 cgguc-(uuu ---)--ggcc gu-ccgaguu guagucugg- agaagugcuu ucc------- 841 ----gcgc-- ---------- ---------- ---------- ---------- ug-ga-c-cg 901 ugua-uaa-- --g-ucu-c( u-(uggaac- )a)gag-c-- ---------- --------GU 961 --|C(AUA)G |AGGG-(UGA GAAU)-CCCG UC|-uuugac acg-gacuac c-----agug 1021 c-uuugu--- -gaugcgc-u cucaaa---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGAGUU GUU(----UG 1141 GGAA)UGCAG CUCAAA---- auGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUGAAUUC-- ---------- ---------- ---------- )CAU-CUAAA GCU----AAA 1381 UA-------- ---------- UUGGC-GAGA GACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAUG -AAA-AGCAC UUU(gg-aa- )AGAG-AGUU A-AACAGUAC G-UGAAAU-U 1501 GCUGA-AAG< gg---aaacg cuugaaguca gucgcguc-g uccgg----- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- -[a--acuca 2221 gccuugc-(- uuuc-)-gc- uuggugca-- -cuuuccgga ugacgg-guc agca-|ucga 2281 uuuug-accg ucggaaaagg -gcuagagua auguggcacc -----(ucug -)-----ggu 2341 gugu-uauag acucuggu-- -cgcauacgg cg-guug-gg aucgaggaac g--cagcgcg 2401 c-cgcaa-gg c-ag-ggg-- --uucg--cc cacuuucgcg cuu]------ ---------- 2461 ---------- ---------- ---------- ---------- ---------- ------agga 2521 ugcu-ggc-- --------a- -----uaaug gcuuuaaacg >acaacgACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUACCU GCGAGUGU-u ugggu----( -------gga 2641 aa)------- ---------- ---a-cccg- ---------- --agCGCGUA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------aag uugaga--uc ccu------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----gucgu- ----)----- ---------- -----gggga --gcaccgac 3061 g--------- ---------- ---------- ---------- -------ccc gg-acc-uga 3121 cg-(--uucu -)-cugac-- ggau-ccgcg g]-------- ---------U AGAGCAUGU- 3181 -AUG-UUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AA|U-AGGGU GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-AUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU CAAAUUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCUGC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-AGAA -ACUc--|-- -|-auua--- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------u 3661 c-agaUUUAU -G|UGG--UA AA-GCGAAUG AUUAGAGGC- -----CUUGG GGUU--(gaa 3721 a-c)--AACC U-UAA-|CCU AUUC-UCAAA CUUUA-AAUA |UGUAAGaac -gagccguc- 3781 (-gcuugauu g)gaccgcuc ggcg------ ---------- ---------- ---------- 3841 ---------- ---------- ----AUUg-a g|ag-uuucu -AGU-GGGCC -AUu-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- AACGCGA--- GGUUAAG--G 3961 U|GCCG-GAA U-A--CA-CG CUCAU-ca-- --------ga caccac---- -AAAAGGUGU 4021 U--AGUUCAU CUAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- CAAGCGUGU| U|-------- --ACCCAU-- --ACCUCGC| (- -----)-gcg cugac-gAGU AGGC------ 4441 --AGG|-CG- UG-GA-GG-- --------u- -cag-uga-- a------GAA GCCU-----A 4501 G-GCA(GUAA -)UGCUGGG- UGA|A-ACG| G--CCUCUA~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~)~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ (~~~~~~~~) ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~-~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- (~~~~~)~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS G.microspo 9262 bp RNA RNA 11-JAN-191 DEFINITION Ganoderma microsporum. ACCESSION No information KEYWORDS No information. SOURCE Ganoderma microsporum. ORGANISM Ganoderma microsporum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X78779 ID GM25S9 standard; DNA; FUN; 1464 BP. XX AC X78779; XX DT 19-APR-1994 (Rel. 39, Created) DT 19-APR-1994 (Rel. 39, Last updated, Version 1) XX DE G.microsporum 0821 25s rDNA XX KW 25S ribosomal DNA. XX OS Ganoderma microsporum OC Eukaryota; Plantae; Thallobionta; Basidiomycotina; Hymenomycetes; OC Aphyllophorales; Ganodermataceae. XX RN [1] RA Moncalvo J.M., Hseu R.S., Wang H.H.; RT "Species identification and phylogenetic relationships in RT Ganoderma inferred from ribosomal DNA sequence data"; RL Unpublished. XX RN [2] RP 1-1464 RA Moncalvo J.; RT ; RL Submitted (07-APR-1994) to the EMBL/GenBank/DDBJ databases. RL J. Moncalvo, National Taiwan University, Applied Microbiology RL Laboratory, Agricultural Chemistry Dept, Taipei, Taiwan, PROC XX FH Key Location/Qualifiers FH FT rRNA 1..1464 FT /note="25s rDNA, 5' end" FT source 1..1464 FT /organism="Ganoderma microsporum" FT /strain="0821" XX SQ Sequence 1464 BP; 396 A; 309 C; 423 G; 328 T; 8 other; BASE COUNT 396 a 309 c 423 g 328 t 7806 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~ugaccuc )--ugaccuc aaaucagg-u aGG----ACU 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UC AAUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-A)AG-G AU|UCCCCUA GU---AAC(U GCGA)GUG-A A-----GCGG GAAA------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------aauu uaaaaucugg 781 cgguc-(uuu ---)--ggcc gu-ccgaguu guagucugg- agaagugcuu ucc------- 841 ----gcgc-- ---------- ---------- ---------- ---------- ug-ga-c-cg 901 ugua-uaa-- --g-ucu-c( u-(uggaac- )a)gag-c-- ---------- --------GU 961 --|C(AUA)G |AGGG-(UGA GAAU)-CCCG UC|-uuugac acg-gacuac c-----agug 1021 c-uuugu--- -gaugcgc-u cucaaa---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGAGUU GUU(----UG 1141 GGAA)UGCAG CUCAAA---- auGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUGAAUUC-- ---------- ---------- ---------- )CAU-CUAAA GCU----AAA 1381 UA-------- ---------- UUGGC-GAGA GACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAUG -AAA-AGCAC UUU(gg-aa- )AGAG-AGUU A-AACAGUAC G-UGAAAU-U 1501 GCUGA-AAG< gg---aaacg cuugaaguca gucgcguu-g uccgg----- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- -[a--acuca 2221 gccuugc-(- uuuc-)-gc- uuggugca-- -cuuuccgga ugacgg-guc agca-|ucga 2281 uuuug-accg ucggaaaagg -gcuggagua auguggcacc -----(ucuc -)-----ggu 2341 gugu-uauag acuccggu-- -cgcauacgg cg-guug-gg aucgaggaac g--cagcgcg 2401 c-cgcaa-gg c-ag-ggg-- --uucg--cc cacuuucgcg cuu]------ ---------- 2461 ---------- ---------- ---------- ---------- ---------- ------agga 2521 ugcu-ggc-- --------a- -----uaaug gcuuuaaacg >acaacgACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUACCU GCGAGUGU-u ugggu----( -------gga 2641 aa)------- ---------- ---a-cccg- ---------- --agCGCGUA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------aag uugaga--uc ccu------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----gucgu- ----)----- ---------- -----gggga --gcaccgac 3061 g--------- ---------- ---------- ---------- -------ccc gg-acc-uga 3121 cg-(--uucu -)-cugac-- ggau-ccgcg g]-------- ---------U AGAGCAUGU- 3181 -AUG-UUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AA|U-AGGGU GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-AUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU NAAAUUUGGG UAUAGGG--n C--------- ---------- ---(nAAA-- 3361 --n)A---CU AAU-CGAACC AUCUAGUAGN UGGUUCCUGC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-AGAA -ACUc--|-- -|-auua--- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------u 3661 c-agaUUUAU -G|UGG--UA AA-GCGAAUG AUUAGAGGC- -----CUUGG GGUU--(gaa 3721 a-c)--AACC U-UAA-|CCU AUUC-UCAAA CUUUA-AAUA |UGUAAGaac -gagccguc- 3781 (-gcuugauu g)gaccgcuc ggcg------ ---------- ---------- ---------- 3841 ---------- ---------- ----AUUg-a g|AG-UUUCU -AGU-GGGCn -Ann-uuuG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- AACGCGA--- GGUUAAG--G 3961 U|GCCG-GAA U-A--CA-CG CUCAU-ca-- --------ga caccac---- -AAAAGGUGU 4021 U--AGUUCAU CUAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- CAAGCGUGU| U|-------- --ACCCAU-- --ACCUCGC| (- -----)-gcg cugac-gAGU AGGC------ 4441 --AGG|-CG- UG-GA-GG-- --------u- -cag-uga-- a------GAA GCCU-----A 4501 G-GCA(GUAA -)UGCUGGG- UGA|A-ACG| G--CCUCUA~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~)~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ (~~~~~~~~) ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~-~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- (~~~~~)~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS G.tsugae 9262 bp RNA RNA 11-JAN-191 DEFINITION Ganoderma tsugae. ACCESSION No information KEYWORDS No information. SOURCE Ganoderma tsugae. ORGANISM Ganoderma tsugae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X78778 ID GTJ225S standard; DNA; FUN; 1464 BP. XX AC X78778; XX DT 19-APR-1994 (Rel. 39, Created) DT 19-APR-1994 (Rel. 39, Last updated, Version 1) XX DE G.tsugae J2 25s rDNA XX KW 25S ribosomal DNA. XX OS Ganoderma tsugae OC Eukaryota; Plantae; Thallobionta; Basidiomycotina; Hymenomycetes; OC Aphyllophorales; Ganodermataceae. XX RN [1] RA Moncalvo J.M., Hseu R.S., Wang H.H.; RT "Species identification and phylogenetic relationships in RT Ganoderma inferred from ribosomal DNA sequence data"; RL Unpublished. XX RN [2] RP 1-1464 RA Moncalvo J.; RT ; RL Submitted (07-APR-1994) to the EMBL/GenBank/DDBJ databases. RL J. Moncalvo, National Taiwan University, Applied Microbiology RL Laboratory, Agricultural Chemistry Dept, Taipei, Taiwan, PROC XX FH Key Location/Qualifiers FH FT rRNA 1..1464 FT /note="25s rDNA, 5' end" FT source 1..1464 FT /organism="Ganoderma tsugae" FT /strain="J2" XX SQ Sequence 1464 BP; 396 A; 312 C; 425 G; 327 T; 4 other; BASE COUNT 396 a 312 c 425 g 327 t 7802 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~ugaccuc )--ugaccuc aaaucagg-u aGG----ACU 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UC AAUAAG-C-G G-nGGAAA-- --AGAAACU( 541 AAC-A)AG-G AU|UCCCCUA GU---AAC(U GCGA)GUG-A A-----GCGG GAAA------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------aauu uaaaaucugg 781 cgguc-(uuu ---)--ggcc gu-ccgaguu guagucugg- agaagugcuu ucc------- 841 ----gcgc-- ---------- ---------- ---------- ---------- ug-ga-c-cg 901 ugua-uaa-- --g-ucu-c( u-(uggaac- )a)gag-c-- ---------- --------GU 961 --|C(AUA)G |AGGG-(UGA GAAU)-CCCG UC|-uuugac acg-gacuac c-----agug 1021 c-uuugu--- -gaugcgc-u cucaaa---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGAGUU GUU(----UG 1141 GGAA)UGCAG CUCAAA---- auGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUGAAUUC-- ---------- ---------- ---------- )CAU-CUAAA GCU----AAA 1381 UA-------- ---------- UUGGC-GAGA GACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAUG -AAA-AGCAC UUU(gg-aa- )AGAG-AGUU A-AACAGUAC G-UGAAAU-U 1501 GCUGA-AAG< gg---aaacg cuugaaguca gucgcguu-g uccgg----- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- -[a--acuca 2221 gccuugc-(- uuuu-)-gc- uuggugca-- -cuuuccgga ugacgg-guc agca-|ucga 2281 uuuug-accg ucggaaaagg -gcuggagua auguggcacc -----(ucuc -)-----ggu 2341 gugu-uauag acuccggu-- -cgcauacga cg-guug-gg aucgaggaac g--cagcgcg 2401 c-cgcaa-gg c-ag-ggg-- --uucg--cc cacuuucgcg cuu]------ ---------- 2461 ---------- ---------- ---------- ---------- ---------- ------agga 2521 ugcu-ggc-- --------a- -----uaaug gcuuuaaacg >acaacgACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUACCU GCGAGUGU-u ugggu----( -------gga 2641 aa)------- ---------- ---a-cccg- ---------- --agCGCGUA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------aag uugaga--uc ccu------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----gucgu- ----)----- ---------- -----gggga --gcaccgac 3061 g--------- ---------- ---------- ---------- -------ccc gg-acc-uga 3121 cg-(--uucu -)-cugac-- ggau-ccgcg g]-------- ---------U AGAGCAUGU- 3181 -AUG-UUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AA|U-AGGGU GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-AUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU CAAAUUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCUGC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-AGAA -ACUc--|-- -|-auua--- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------u 3661 c-agaUUUAU -G|UGG--UA AA-GCGAAUG AUUAGAGGC- -----CUUGG GGUU--(gaa 3721 a-c)--AACC U-UAA-|CCU AUUC-UCAAA CUUUA-AAUA |UGUAAGaac -gagccguc- 3781 (-gcuugauu g)gaccgcuc ggcg------ ---------- ---------- ---------- 3841 ---------- ---------- ----AUUg-a g|AG-UUUCU -AGU-GGGCC -Ann-nUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- AACGCGA--- GGUUAAG--G 3961 U|GCCG-GAA U-A--CA-CG CUCAU-ca-- --------ga caccac---- -AAAAGGUGU 4021 U--AGUUCAU CUAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- CAAGCGUGU| U|-------- --ACCCAU-- --ACCUCGC| (- -----)-gcg cugac-gAGU AGGC------ 4441 --AGG|-CG- UG-GA-GG-- --------u- -cag-uga-- a------GAA GCCU-----A 4501 G-GCA(GUAA -)UGCUGGG- UGA|A-ACG| G--CCUCUA~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~)~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ (~~~~~~~~) ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~-~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- (~~~~~)~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (7)-Tremel 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS F.neofor.B 9262 bp RNA RNA 11-JAN-191 DEFINITION Filobasidiella neoformans Cryptococcus neoformans subsp. gattii str. was Cryptococcus neoformans . ACCESSION No information KEYWORDS No information. SOURCE Filobasidiella neoformans Cryptococcus neoformans subsp. gattii str. was Cryptococcus neoformans . ORGANISM Filobasidiella neoformans Cryptococcus neoformans. REFERENCE 1 (bases 1 to 1758) AUTHORS Fan,M., Guttel,R., Ragan,M. and Casadevall,A. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L14067 L14067 LOCUS CPC5825S 3785 bp ds-DNA PLN 24-JUN-1993 DEFINITION Cryptococcus neoformans 5.8S and 25S ribosomal RNA genes. ACCESSION L14067 KEYWORDS 25S ribosomal RNA; 5.8S ribosomal RNA. SOURCE Cryptococcus neoformans (sub_species gattii) (library: ATCC 24065) DNA. ORGANISM Cryptococcus neoformans Eukaryota; Fungi; Eumycota; Basidiomycotina; Filobasidiales. REFERENCE 1 (bases 1 to 3785) AUTHORS Fan,M., Guttel,R., Ragan,M. and Casadevall,A. TITLE 5.8S and 25S RNA of Cryptococcus neoformans JOURNAL Unpublished (1993) COMMENT this sequence is immediately 3' to the last base in sequence L05427. FEATURES Location/Qualifiers rRNA <1 /product="17S ribosomal RNA" /note="putative" rRNA 52..220 /product="5.8S ribosomal RNA" /note="putative" misc_RNA 221..393 /standard_name="ITS" /note="putative" rRNA 394..3785 /product="25S ribosomal RNA" /note="putative" source 1..3785 /organism="Cryptococcus neoformans" /sub_species="gattii" /sequenced_mol="DNA" /tissue_lib="ATCC 24065" BASE COUNT 1001 a 769 c 1059 g 956 t ORIGIN Cryptococcus neoformans B (c.neo25sb) From Casadevall corrected April 8, 1993 BASE COUNT 942 a 722 c 1004 g 876 t 5718 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AAACUU UCAACAACGG AUC|UCUUGG 61 |CUUCCAC|A U|-CGAUGAA GAA|CGCA(- -GCGA-AA)U |GC-GAUAAG UA-augu|[- 121 gaauugcaga auucagugaa u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---caucg|A GUCUUU-GAA Cgc-(aacuu )-g-c|gccc 241 uuu------g g(-------- ---------- ---------- -----uauu- ---)cc---- 301 --ga-agggc ---augccug -u-uu-gaga guca--(--- ---uga---/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------guu )--ugaccuc aaaucagg-u aGG----GCU 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UC AAUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-A)AG-G AU|UCCCUUA GU---AAC(G GCGA)GUG-A A-----CCGG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------aauu ugaaaucugg 781 cgucc-(ucc ---)--gggc gu-ccgaguu cuaaucuac- agaaacguuu ucc------- 841 ----gugc-- ---------- ---------- ---------- ---------- ug-ga-c-cg 901 uguc-uaa-- --g-ucc-c( u-(uggaau- )a)ggg-u-- ---------- --------AU 961 --|C(AAA)G |UGGG-(UGA CAAU)-CCCG UA|-cuugac acg-auc-ac c-----agug 1021 c-ucugu--- -gauacgu-u uucuac---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGCGUU ACU(----UG 1141 GGAG)UGUAG CGCAAA---- auGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAACUC-- ---------- ---------- ---------- )CAU-CUAAG GCU----AAA 1381 UA-------- ---------- UUGGU-GGAA GACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAUG -AAA-AGCAC UUU(gg-aa- )AGAG-AGUU A-AACAGUAC G-UGAAAU-U 1501 GUUGA-AAG< gg---aaacg auugaaguca ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- -------guc gugucu-auu ggg--uucag 2221 ccagc--(uc u--)--gcu- ggugua-uu- -cccu--uu- agacgg-guc aaca-|ucag 2281 uucug-aucg guggauaagg -gcuggagga auguggcacu c----(uucg -)----gggu 2341 gugu-uaua- gccuccugu- -cgcauacac ug-guug-gg acugaggaau g--cagcucg 2401 c-cuuuaugg ccgg-gg--u ucg-----cc cacguucgag cuu]------ ---------- 2461 ---------- ---------- ---------- ---------- ---------- ------agga 2521 uguu-gac-- --------a- -----aaaug gcuuuaaacg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUAUCU GCGAGUGU-u ugagu----( -------guc 2641 aa)------- ---------- ---a-cucg- ---------- --agCGCGUA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ----auguag gaggga--uc c--------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----gcaa-- ----)----- ---------- -------gga --gcaccuuc 3061 g--------- ---------- ---------- ---------- -------acc ga-ucc-gga 3121 uc-(--uucu -)-gugau-- ggau-uugag u]-------- ---------A AGAGCAUAU- 3181 -AUG-CUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AA|U-AGGGC GAAGCCAGGG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-AUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU CGAAUUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCUGC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-AGAA -ACUc--|-- -|-gca---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------u 3661 c-aguUUUAU -G|AGG--UA AA-GCGAAUG AUUAGAGGC- -----CUUGG GGAC--(gaa 3721 a-c)--GUCC U-UAA-|CCU AUUC-UCAAA CUUUA-AAUG |UGUAAGaag -cacuuguc- 3781 (-acuuaauu g)gacgagcg caugcg---- ---------- ---------- ---------- 3841 ---------- ---------- ----AAUg-a g|AG-UUUCU -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- AUCGUGA--- GGUUAAG--G 3961 U|GCCG-GAA U-A--CA-CG CUCAU-ca-- --------ga caccac---- -AAAAGGUGU 4021 U--AGUUCAU CUAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- CAAGCGUGU| U|-------- --ACCCAU-- --ACCUCAC| (- -----)-gcg cugac-gAGU AGGC------ 4441 --AGG|-CG- UG-GA-GG-- --------u- -cag-ugu-- a------GAA GCCU-----A 4501 G-GCA(GUGA -)UGUCGGG- UGG|A-ACG| G--CCUCUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAG- U(gagaa--- ---------- ---------- ---------- 4621 --)CCUUGAA |GACUGAAGU G-GAG|AAAG GUU|CCAUGG UA-ACA(-GC AGU)UG|GAC 4681 AUGGGUCAGU |-CGA-UCCU AAGA------ -------<-g auaggg(-aa ac)ucc--gu 4741 u---uuaaag c-gcacg--- ---------- ---------- (auuuuc--) ---------- 4801 --------cg ugccgccua- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA AGGGA-AU-C CGG(UUAAGA UU-)CCGGA| -AC----cag gaugugg-au 4981 ca[uug---- ---------- ---------- ---------- -----acg(- -guaa--)cg 5041 u--------- ---------- ---------- ---------- -----aa-a] uga-aguugg 5101 agac-----g ucg--gcaag gg-c-ccug- -GG-AAGA(G UUCUCUUU-) UCUCCU-|UA 5161 A-ccgccu-- ---------- acg|a---cc ucgA--AAUC ----GG(AUU AU-)CCGGA- 5221 GC-ug-agg- uuaua----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----uggu-g gGU-----AA 5341 AGCACAACA( --ccuc--)U GUUGUGUC-c ggugcg---u -ccuug--ac gauC-CUUGA 5401 AAA-uccgac -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaacgua-- ---------- ----uaaguc --uc-acg-- cc-ugGUCGU 5581 A|CU--CAUA ACC(GCAGCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| AGUUG-||A- 5641 UG-G--AACA AU-GUAG-AU A-AGGGAAGU CGGCAA-AAU -AGAUCCGUA AC(UUCG)GG 5701 AUAAGGAUU| GGCUCUAAG- ---------- -(-----)---- -------CUU AGAACU|G(- --GUA)CGGA 6601 CAAGGGGAAU C|-UGACUGU CU(AAUUA)A AACAUAGCAU UGCG|A--UG G|CCA(---g 6661 aaaa)UGG-- ---------- --U-GUUGAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU AUCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUUU G---ACA-UU |GUGAAAAGA CAUGGAGGGU 7021 GUAGAAUAAG UGGGAGC--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -UUCG)---- 7141 ---------G C-GCCGGUGA AA-UACCACU |ACCUCCAU- -CGUUU-UUU UACUUAu--- 7201 ------(--- --)------| --a GACAU-UGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAAAGAUA AC-)GCAG-G U|G|U|CCU- AAGGG-GGAC |UCAUG-GAG 7621 -A(ACA---- GAAA)UCUCC AGUGGA|AC( A|A--AAGG) GUAAAAG-UC C-CCUUGAUU 7681 -UUGAUUU(u c--agugu-- )GAAUACAAA CCAU(-GAAA )GUGUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -ucC-CUC(- -GGAG-U--U U---)----- ---------- 7861 -----GAG|G CUAGAG-GUG CC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UA C-CGAAG(CA -GA-)AUUCG GUAA-GCGU| UGGAU(UGUU C)ACCCACUA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGG-a<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->-guGU CG-UC-GU-A AUGGUAAUUG AGGG(UAGUA 8281 C(GAGA)GGA AC-)UGCUCA U|UCGUAUAA UUGGUAUUUG CGU|-CUGUC C(GAUC)GGG 8341 CAAUGACGCG A-AGCUAUC- AU-ACGC--C AGAUUAUGGC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCUG-U ACUA--G-AA -ACG--ACGA U<--uuuggu cccgcaca-- -uguuaguug 8461 uguuuaaau- --aggc-uuc g-gcugugaa --ccauaucu gaggguugg- -------gcu 8521 -gcuuaagc- ggaaag-gc- uuag-guagu cu-ccuuc-g ua-uugaaau ggaaua---- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------u gggcggggg> --|------( ---)------ 8701 ----uaaauc |cuuug(-ca gacga)cu-u gaa-u---gg g-a|acgggg ugcuguaagu 8761 gg-uagagua gc----(cuu -guu------ ---------- ---------- ---------- 8821 ----)----g cuacgauc-u ac-|ugaggc u|aag--ccc u--ugu-u-c uau-aga-uu 8881 ugu~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS F.neofor.D 9262 bp RNA RNA 11-JAN-191 DEFINITION Filobasidiella neoformans Cryptococcus neoformans str. was Cryptococcus neoformans . ACCESSION No information KEYWORDS No information. SOURCE Filobasidiella neoformans Cryptococcus neoformans str. was Cryptococcus neoformans . ORGANISM Filobasidiella neoformans Cryptococcus neoformans. REFERENCE 1 (bases 1 to 1758) AUTHORS Fan,M., Guttel,R., Ragan,M. and Casadevall,A. Fan,M., Guttel,R., Ragan,M. and Casadevall,A. JOURNAL No information STANDARD No information COMMENTS Organism information Culture collection: 24067 Sequence information (bases 1 to 9262) Corresponding GenBank entry: L14068 L14068 Cryptococcus neoformans D (c.neo25sd) From Casadevall Corrected- April 8, 1993 LOCUS CPC5825 3785 bp ds-DNA PLN 24-JUN-1993 DEFINITION Cryptococcus neoformans 5.8S and 25S ribosomal RNA sequences. ACCESSION L14068 KEYWORDS 25S ribosomal RNA; 5.8S ribosomal RNA. SOURCE Cryptococcus neoformans (library: ATCC 24067) DNA. ORGANISM Cryptococcus neoformans Eukaryota; Fungi; Eumycota; Basidiomycotina; Filobasidiales. REFERENCE 1 (bases 1 to 3785) AUTHORS Fan,M., Guttel,R., Ragan,M. and Casadevall,A. TITLE 5.8S and 25S RNA of Cryptococcus neoformans JOURNAL Unpublished (1993) COMMENT this sequence is immediately 3' to the last base in sequence L05428. FEATURES Location/Qualifiers misc_RNA 1..51 /standard_name="ITS" /note="putative" rRNA 52..220 /product="5.8S ribosomal RNA" /note="putative" misc_RNA 221..393 /standard_name="ITS" /note="putative" rRNA 394..3785 /product="25S ribosomal RNA" /note="putative" source 1..3785 /organism="Cryptococcus neoformans" /sequenced_mol="DNA" /tissue_lib="ATCC 24067" BASE COUNT 1004 a 770 c 1057 g 954 t ORIGIN BASE COUNT 944 a 722 c 1003 g 875 t 5718 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AAACUU UCAACAACGG AUC|UCUUGG 61 |CUUCCAC|A U|-CGAUGAA GAA|CGCA(- -GCGA-AA)U |GC-GAUAAG UA-augu|[- 121 gaauugcaga auucagugaa u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---caucg|A GUCUUU-GAA Cgc-(aacuu )-g-c|gccc 241 uuu------g g(-------- ---------- ---------- -----uauu- ---)cc---- 301 --ga-agggc ---augccug -u-uu-gaga guca--(--- ---uga---/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------guu )--ugaccuc aaaucagg-u aGG----GCU 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UC AAUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-A)AG-G AU|UCCCUUA GU---AAC(G GCGA)GUG-A A-----CCGG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------aauu ugaaaucugg 781 cgucc-(ucc ---)--gggc gu-ccgaguu cuaaucuac- agaaacguuu ucc------- 841 ----gugc-- ---------- ---------- ---------- ---------- ug-ga-c-cg 901 uguc-uaa-- --g-ucc-c( u-(uggaau- )a)ggg-u-- ---------- --------AU 961 --|C(AAA)G |UGGG-(UGA CAAU)-CCCG UA|-cuugac acg-auc-ac c-----agug 1021 c-ucugu--- -gauacgu-u uucuac---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGCGUU ACU(----UG 1141 GGAG)UGUAG CGCAAA---- auGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAACUC-- ---------- ---------- ---------- )CAU-CUAAA GCU----AAA 1381 UA-------- ---------- UUGGU-GGAA GACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAUG -AAA-AGCAC UUU(gg-aa- )AGAG-AGUU A-AACAGUAC G-UGAAAU-U 1501 GUUGA-AAG< gg---aaacg auugaaguca ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- -------guc gugucu-auu ggg--uucag 2221 ccagu--(uc u--)--gcu- ggugua-uu- -cccu--uu- agacgg-guc aaca-|ucag 2281 uucug-aucg guggauaagg -gcuggagga auguggcacu c----(uucg -)----gggu 2341 gugu-uaua- gccuccugu- -cgcauacac ug-guug-gg acugaggaau g--cagcucg 2401 c-cuuuaugg ccgg-gg--u ucg-----cc cacguucgag cuu]------ ---------- 2461 ---------- ---------- ---------- ---------- ---------- ------agga 2521 uguu-gac-- --------a- -----aaaug gcuuuaaacg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUAUCU GCGAGUGU-u ugagu----( -------guc 2641 aa)------- ---------- ---a-cucg- ---------- --agCGCGAA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ----auguag gaggga--uc c--------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----gcaa-- ----)----- ---------- -------gga --gcaccuuc 3061 g--------- ---------- ---------- ---------- -------acc ga-ucc-gga 3121 uc-(--uucu -)-gugau-- ggau-uugag u]-------- ---------A AGAGCAUAU- 3181 -AUG-CUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AA|U-AGGGC GAAGCCAGGG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-AUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU CGAAUUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCUGC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-AGAA -ACUc--|-- -|-gca---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------u 3661 c-aguUUUAU -G|AGG--UA AA-GCGAAUG AUUAGAGGC- -----CUUGG GGAC--(gaa 3721 a-c)--GUCC U-UAA-|CCU AUUC-UCAAA CUUUA-AAUG |UGUAAGaag -cacuuguc- 3781 (-acuuaauu g)gacgagcg caugcg---- ---------- ---------- ---------- 3841 ---------- ---------- ----AAUg-a g|AG-UUUCU -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- AUCGUGA--- GGUUAAG--G 3961 U|GCCG-GAA U-A--CA-CG CUCAU-ca-- --------ga caccac---- -AAAAGGUGU 4021 U--AGUUCAU CUAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- CAAGCGUGU| U|-------- --ACCCAU-- --ACCUCAC| (- -----)-gcg cugac-gAGU AGGC------ 4441 --AGG|-CG- UG-GA-GG-- --------u- -cag-ugu-- a------GAA GCCU-----A 4501 G-GCA(GUGA -)UGUCGGG- UGG|A-ACG| G--CCUCUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAG- U(gagaa--- ---------- ---------- ---------- 4621 --)CCUUGAA |GACUGAAGU G-GAG|AAAG GUU|CCAUGG UA-ACA(-GC AGU)UG|GAC 4681 AUGGGUCAGU |-CGA-UCCU AAGA------ -------<-g auaggg(-aa ac)ucc--gu 4741 u---uuaaag c-gcacg--- ---------- ---------- (auuuuc--) ---------- 4801 --------cg ugccgccua- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA AGGGA-AU-C CGG(UUAAGA UU-)CCGGA| -AC----cag gaugugg-au 4981 ca[uug---- ---------- ---------- ---------- -----acg(- -guaa--)cg 5041 u--------- ---------- ---------- ---------- -----aa-a] uga-aguugg 5101 agac-----g ucg--gcaag gg-c-ccug- -GG-AAGA(G UUCUCUUU-) UCUCCU-|UA 5161 A-ccgccu-- ---------- acg|a---cc ucgA--AAUC ----GG(AUU AU-)CCGGA- 5221 GC-ug-agg- uuaua----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----uggu-g gGU-----AA 5341 AGCACAACA( --ccuc--)U GUUGUGUC-c ggugcg---u -ccuug--ac gauC-CUUGA 5401 AAA-uccgac -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaacgua-- ---------- ----uaaguc --uc-acg-- cc-ugGUCGU 5581 A|CU--CAUA ACC(GCAGCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| AGUUG-||A- 5641 UG-G--AACA AU-GUAG-AU A-AGGGAAGU CGGCAA-AAU -AGAUCCGUA AC(UUCG)GG 5701 AUAAGGAUU| GGCUCUAAG- ---------- -(-----)---- -------CUU AGAACU|G(- --GUA)CGGA 6601 CAAGGGGAAU C|-UGACUGU CU(AAUUA)A AACAUAGCAU UGCG|A--UG G|CCA(---g 6661 aaaa)UGG-- ---------- --U-GUUGAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU AUCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUUU G---ACA-UU |GUGAAAAGA CAUGGAGGGU 7021 GUAGAAUAAG UGGGAGC--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -UUCG)---- 7141 ---------G C-GCCGGUGA AA-UACCACU |ACCUCCAU- -CGUUU-UUU UACUUAu--- 7201 ------(--- --)------| --a GACAU-UGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAAAAAUA AC-)GCAG-G U|G|U|CCU- AAGGG-GGAC |UCAUG-GAG 7621 -A(ACA---- GAAA)UCUCC AGUGGA|AC( A|A--AAGG) GUAAAAG-UC C-CCUUGAUU 7681 -UUGAUUU(u c--agugu-- )GAAUACAAA CCAU(-GAAA )GUGUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -ucC-CUC(- -GGAG-U--U U---)----- ---------- 7861 -----GAG|G CUAGAG-GUG CC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UA C-CGAAG(CA -GA-)AUUCG GUAA-GCGU| UGGAU(UGUU C)ACCCACUA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGG-a<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->-guGU CG-UC-GU-A AUGGUAAUUG AGGG(UAGUA 8281 C(GAGA)GGA AC-)UGCUCA U|UCGUAUAA UUGGUAUUUG CGU|-CUGUC C(GAUC)GGG 8341 CAAUGACGCG A-AGCUAUC- AU-ACGC--C AGAUUAUGGC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCUG-U ACUA--G-AA -ACG--ACGA U<--uuuggu cccgcaca-- -uguuaguug 8461 uguuuaaau- --aggc-uuc g-gcugugaa --ccauaucu gaggguugg- -------gcu 8521 -gcuuaggc- ggaaag-gc- uuag-guagu cu-ccuuc-g ua-uugaaau ggaaua---- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------u gggcgggag> --|------( ---)------ 8701 ----uaaauc |cuuug(-ca gacga)cu-u gaa-u---gg g-a|acgggg ugcuguaagu 8761 gg-uagagua gc----(cuu -guu------ ---------- ---------- ---------- 8821 ----)----g cuacgauc-c ac-|ugaggc u|aag--ccc u--ugu-u-c uau-aga-uu 8881 ugu~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (5)-Chytri 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS Bla.emerso 9262 bp RNA RNA 13-DEC-1996 DEFINITION Blastocladiella emersonii.; 28S ribosomal RNA; 28S rRNA gene. ACCESSION X90410 KEYWORDS 28S ribosomal RNA; 28S rRNA gene. SOURCE Blastocladiella emersonii. ORGANISM Blastocladiella emersonii. REFERENCE 1 (bases 1 to 3538) AUTHORS Van der Auwera,G. and De Wachter,R. TITLE evolution of zoosporic fungi evolution of zoosporic fungi Large subunit ribosomal RNA of the chytridiomycete Large subunit ribosomal RNA of the chytridiomycete Blastocladiella emersonii, and implications for the JOURNAL J. Mol. Evol. 43, 476-483 (1996) STANDARD No information REFERENCE 2 (bases 1 to 3538) AUTHORS Van Der Auwera,G.J.J. TITLE Direct Submission JOURNAL Submitted (28-JUL-1995) G.J.J. Van Der Auwera, Universitaire Instellung Antwerpen, Universiteitsplein 1, 2610 Wilrijk, Antwerpen, BELGIUM STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X90411(23S),X90410(5.8S) BASE COUNT 1008 a 709 c 995 g 981 t 5569 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~CAACUU UCAGCAAUGG AUC|UCUUGG 61 |CUCUUGC|A U|-CGAUGAA GAA|CGCA(- -GCGA-AA)U |GC-GAUACG UAaugu-|[- 121 gaauugcaga acgc---gag u--------- ---------- ---------- -------]-- 181 ---(------ -)-------- ---caucg|A AAUUUU-GAA Cgc-(acauu )-g-c|acuu 241 ggu------g g(-------- ---------- ---------- -----cauu- ---)cc---- 301 --gc-caagu ---auguuug -u-uu-gagu gucu--(--- ---gug---/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --------uu )--ggaccuc aaaucaag-c aag----GCU 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UU AAUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-A)AG-G AU|UCCCCGA GU---AAU(G GCGA)AUG-A A-----ACGG GAAA------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------aauu ugaaaucucu 781 ggc--(-gca a---)---gu ca-gcgaguu guaauuugu- aaaag-uugc cuuu------ 841 ----auccu- ---------- ---------- -------g-- --------gc gcacu-gcgc 901 agcacaaa-- --g-uuc-g( c-(uggaau- )g)cga-cua cucguaagag uacuuuagGU 961 --|C(AGA)G |AGGG-(UGA AAAC)-CCCG UU|-uuugug cuggcggcag u-----gugu 1021 ugagugu--- guggcuuc-- uuuaaa---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGAUU GUU(----UG 1141 GGAA)UGCAA UCCAAA---U A-GGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAACUC-- ---------- ---------- ---------- )CAU-CCAAG GCU----AAA 1381 UA-------- ---------- UCCGC-AAGA GACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAUG -AAA-AGAAC UCU(ga-ag- )AGAG-AGUU C-AAUAGUAC G-UGAAAU-U 1501 GCUGA-AAG< gg---aaacg cuugaaac-g a--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------u uguugcgucu cuuuucgauc aucaagugcu ugucacuugu gcacucgaau 2221 ugagggcagg ucagcagcag uuuuuugcga cuuugacgau uuucugaaau guggcugcuu 2281 gucaguguua uagucagaau uuuuccaagu cgcaaaggac ugaggcccgc ugcaccuuuu 2341 gagcuggcag uuggcgccg- uguguuugug ugugcuaagg ccuugugauu aguuucggcu 2401 a-guccaaga cuua-gugcu ugcagaugcg cgccagucaa uugcugcuuu gguguuuaca 2461 a--------- ---------- ---------- ---------- ---------- ------aggu 2521 ugcu-gac-- ---------- aaa-a---ug guuuuaaucg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUG CAACAAACAU GCGAGUCG-u agggu----( -------gac 2641 aa)------- ---------- ---a-ccug- ---------- --aAGGCGCA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -----aaagg gcagg---ac cga------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----uuaaau ----)----- ---------- ------ucgu --gcacugcc 3061 g--------- ---------- ---------- ---------- -------ccc gg-uuaugc- 3121 ggc(c-uaau -)gccaaa-- uagu-cugag g]-------- ---------C AGAGCAUGU- 3181 -UUG-CUGCG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- CA|U-AGGGC GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-AUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU CAAAUGUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUUCCGC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-AGAG -AUUc-g|ga c|-------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- -------gac 3661 guaguUUUAU -G|AGG--UA AA-GCGAAUG AUUAGAGGC- -----AUGGG GGGC--(GAA 3721 A-C)--GCUC U-UCA-|CCU AUUC-UCAAA CUUUA-AAUA |UGUAAGAAg -cccuugcug 3781 cuuaggcuga gcuugcgg-c uaugcg---- ---------- ---------- ---------- 3841 ---------- ---------- ----AAUAca g|AA-UCUCU -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- AACGUUG--- AGUUAAG--G 3961 U|GCCA-AAG U-G--UA-CG CUCAU-UC-- ------uaga caccau---- -AAAAGGUGU 4021 U--GGUUCAU CUAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- CAAGCGUAU| C|-------- --ACCUAU-- --ACUCGAC| (- -----)aaug caaag-gAGU AGGC------ 4441 --GGA|-CG- UG-GA-GG-- ----uuu-u- -uag-ugu-- c------GAA GCGC---UUU 4501 G-GGC(GUGA -)GCCUGCG- UGG|A-ACA| A--CCUCUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GACUGAAGU G-GAG|AAGG GUU|CCGCAA GA-ACA(-GU GAU)UG|GUU 4681 GCGGGUCAGU |-CGA-UCCU AAGG------ -------<-a gc-ggg(-uu aa)cuc-ugu 4741 u---uuaacg uuaggug--- ---------- ---------- (uuuaau--) ---------- 4801 --------ua ccuacgcucu ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----CC-GAA AGGGA-AU-C CGG(UUAACA UU-)CCGGA| -AC----uug aauuggc-au 4981 uu[uuu---- ---------- ---------- ua-----a-- -a---gcg(- -gcaa--)cg 5041 c--------- ---------- ---------- ---------- -----aa-a] uga-acucgg 5101 ugac-----g uug--gcaag gg-g-ccug- -GG-AAGA(G UUUUCUUU-) UCUUUU-|UA 5161 A-caugu--- ---------a agc|g--a-C UGUG-GAAUC ----GA(AUU GC-)UCGGCG 5221 AA-GC-AC-g uugua----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----ugca-u gGA-----AG 5341 AGCAAAUCC( gcuuuuuu)G GAUUUGuc-c gguguc---c -ucuua--ac gacC-CUUGA 5401 AAA-accggg -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaauuuuau ---------- -----agugu ---c-cag-- uc-aagUCGU 5581 A|CC--CAUC ACC(GCAUCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| AGUUG-||A- 5641 UA-G--AAUA AU-GUAG-AU A-AGGGAAGU CGGCAA-AUU -AGAUCCGUA AC(UUUG)GG 5701 AAAAGGAUU| GGCUCUAAG- ---------- -(-----)---- -------CUU AGAACU|G(- --GUA)CGGA 6601 CAAGAGGAAU C|-UGACUGU CU(AAUUA)A AACAUAGCUU UGCG|A--UG G|UCA(---g 6661 aaag)UGA-- ---------- --U-GUUGAC GCAAAGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCU ACUGU-CCCU AUCUACUAUC 6901 UA|GCGAAAC C|aca-GCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUUU G---GCA-UU |GUGAAAAGA CAUAGGGGGU 7021 GUAGCAUAAG UGGGAGU--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ---ug-->(- -CUUG)ca-- 7141 ---------A C-GAUCUUGA AA-UACCACU |ACCCUUAU- -CGUUU-UUU UACUUAU--- 7201 ------(--- --)------| --a GACAU-GGUC A-GAUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAAGAAUA AC-)GCAG-G U|G|U|CCU- AAGGG-CAAC |UCAUC-GAG 7621 -A(ACG---- GAAA)UCUCG AGUAGA|AC( A|A--AAGG) GUAAAAG-UU G-CCUUGAUU 7681 -UUGAUUU(u c--agugu-- )GAAUACAAA CCAU(-GAAA )GUGUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -uuG-CUC(- -GGAG-U--U U---)----- ---------- 7861 -----GAG|C CUAGAG-GUG UC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UA U-UGAAG(CA -GA-)AUUCA AUAA-GUGU| UGGAU(UGUU C)ACCCACUA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGG-A<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->uagUG UU-UC-UC-A AUAGUAAUUC AACU(CAGUA 8281 C(GAGA)GGA AC-)CGUUGA A|UCGCAUCA UUGGUAUUUG CGG|-UUGGC U(GAGU)AGC 8341 CAGUGCCGCG A-AGCUAAC- AU-GCGU--A GGAUUACGGC U(GAACGCCU C-U-A)AGUC 8401 GGAAUCCA-U GCUA--g-aa -GGG--AAGC A --|------( ---)------ 8701 ----gagauc |ccaug(-ca gacga)cu-u ggaug---ua g-a|agcggg ggcuguacgc 8761 ag-uagagua gc----(cuu -guu------ ---------- ---------- ---------- 8821 ----)----g cua~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (5)-Zygomy 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS Ent.aulica 9262 bp RNA RNA 12-JUN-1996 DEFINITION Entomophaga aulicae.; . ACCESSION U35394 KEYWORDS . SOURCE Entomophaga aulicae. ORGANISM Entomophaga aulicae. REFERENCE 1 (bases 1 to 6326) AUTHORS Silver,J., Walsh,S.R.A., Tyrrell,D. and Hajek,A.E. TITLE Direct Submission JOURNAL of Toronto, 1265 Military Trail, Scarborough, Ontario M1C 1A4, Canada Submitted (05-SEP-1995) Julie Silver, Microbiology, University STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U35394 BASE COUNT 1095 a 595 c 840 g 1019 t 5713 others ORIGIN 1 |--------- ---------- ---------- ----CAACUU UUGACGAUGG AUC|UCUCGG 61 |CUCUCUC|A U|-CGAUGAA GAA|CGUA(- -GUAG-AA)U |GC-GAUACA UA-augu|[- 121 gaauugca-a auccugugaa u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---cauug|A GUUUUU-GAA CGC-(acauu )-g-c|accg 241 aca------- g(-------- ---------- ---------- -----uuua- ---)c----- 301 --ug-uuggu ---uuguuug -u-uu-gaau ugcu--(--- --uaaa---/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --------gu )-aguuauuc aaaucaag-c aag----GCU 481 AC|CCGCUGA -A--UU|UA( AGCA)UA-UU AAUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-A)AG-G AU|UCCCGUA GU---AAU(G GCGA)AUG-A A-----CUGG GAAA------ 601 ---------- ---------- ---------- ---------- -GGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------aauu ua------aa 781 aucac-(uca c--)--guga au-uguag-- ----uuuaua -agauuaaag ucuc------ 841 -----aca-- ---------- ---------- ---------- ---------- gc-aa-ccac 901 uguu-uaa-- --g-ugc-u( c-(uggaau- )g)auc-c-- ---------- --------GU 961 --|C(AUA)G |AGGG-(UGA AAUC)-CCCG UA|-cugaac agagaggaa- gc----ugca 1021 -aa------- gaacuuuu-u ucucaa---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGUGUU GCU(----UG 1141 UUAA)UGCAG CAUUAA---- guGGGA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUC-- ---------- ---------- ---------- )CUU-CUAAA GCU----AAA 1381 UA-------- ---------- UUGGA-GAGA GCCCGAUAGC AAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAUG -AAAGAGAAC CCU(ga-aa- )AGGG-GACU C-AAAAGAAU G-UGAAAU-C 1501 GUCAA-AAG< gg---aagcg cuaagaac-u g--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- -----ucugg aauuca---g aua------u 2221 uuaauag(cu ug-)cuauu- gaa------- -uauu----- ugggu--ggc uauag-uccu 2281 guuucgaacu ucaggaaucu ugggauagaa auuguaggc- -----(uucg -)------gu 2341 uuaccuuuuc uugaacuug- auuucuaaga uuuggggcag gauauaaauu caguugggca 2401 a-uccaugug aaac-uuuau ucaauagacu ugucuagaga guauuagaaa gcauguacug 2461 uucaac---- ---------- ---------- ---------- ---------- -aucaaaauu 2521 uaua-guc-- ---------- aag-ag---- guucuaagcg >------UCC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUAAAU GCAAGUAU-a agggu----( -------gau 2641 aa)------- ---------- ---a-cccu- ---------- --aAUGCGAA AU(GAAA)GU 2701 AA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ----uuucag guaggaa-cc ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----ccuaaa aa--)----- ---------- --------gg -ugcacuauc 3061 a--------- ---------- ---------- ---------- -------acc gaaccucaug 3121 ga-(--uuug -)-uucau-- aggauuugag u]-------- ---------A AGAGCAUUU- 3181 -AUG-UUGGU ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AA|U-AGGGU GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAAGC UCG-UA---G CG-AUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU CGAAUUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCUGC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-AGAA -ACAcgu|-- -|---ag--- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------ua 3661 auaguUUUAU -G|UGG--UA AA-GCGAAUG AUUAGAGGA- -----AUUAG GGGC--(gua 3721 a-a)--GCUU U-UAA-|CCU AUUC-UCAAA CUUUG-AAUU |UGUAAGaag -auguagauu 3781 ucuuaacuga auuuauau-c uuug------ ---------- ---------- ---------- 3841 ---------- ---------- ---aauaaaU G|UG-UUUCU -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- GACGUCG--- GGUUAAG--G 3961 U|GCCU-AAA U-U--UA-CG CUUAUuug-- ---------a caccac---- -AAAAGGUGU 4021 U--AGUUCAU AUUGACA-GC AGGACGGUGG CC(AUGG-AA GUU)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- UAAGCGUGA| U|-------- --ACCUAA-- --ACCUGGC| (- -----)uuua augau-gAGU AGGC------ 4441 --AGG|-CG- UG-GC-GA-- --------U- -U-G-Agu-- u------GAA GCCU-----U 4501 G-AGG(UAAC -)UCUU-GG- UGG|A-UCA| A--UUACUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAG -UAUUCAAA- U(gaaac--- ---------- ---------- ---------- 4621 --)AUCUGAA |GACUGAAGU G-GGG|AAGG GUU|CUGUGG UC-ACA(-UU AUU)UG|CCC 4681 ACAGGUUAUU |-CGA-UCCU AAGG------ -------<-u gu-agc(-ga ac)gcu--gu 4741 ucaaugaauu guaccucaac uu-------- ---------- (uuu-----) --------aa 4801 guugacgaua aagauuugac a--------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----CC-GAA AGGGA-AU-U CAG(UUGAUA UU-)CUGAA| -AA----uug gauguaa-ga 4981 ua[ag----- ---------- ---------- ---------- -----gcg(- -guaa--)cg 5041 ---------- ---------- ---------- ---------- --------g] cga-gccugg 5101 agac-----g cua--aaaua aa-c-ccug- -GG-AAGA(G UUAUCUUU-) UCUAUU-|UA 5161 A-cacuaug- ---------- acu|g---AC CUUG-gAAAC ----AG(UUU AA-)CUGGA- 5221 GAUAA-GGU- uagua----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- -----aag-u gUA-----AG 5341 AGCAGcccu( -uu-au--)u gggaggUC-c ggcgug---u -uuauu--cu agcC-CUUGA 5401 AAA-uccaga -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------g aagcuuaua- ---------- ---uaaaauc --uu-aca-- cc-aagUCGU 5581 A|CC--CAUA ACC(GCAGCA )GG|UCC-UC AAGGU(GAAC A)GCCUCU-| AGUUG-||A- 5641 UA-G--AAUA AU-GUAG-AU A-AGGGAAGU CGGCAA-AAU -AGAUUCGUA AC(UUCG)GA 5701 AAAAGAAUU| GGCUCUAAG- ---------- -(-----)---- -------CUU AGAACU|G(- --GUA)CGGA 6601 CAAGGGGAAU C|-UGACUGU CU(AAUUA)A AACAUAGCAU UGUG|A--UG G|UUA(---- 6661 gcaa)UAA-- ---------- --U-GUUGAC ACAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUUAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU AUUUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGAA -A-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUUU G---ACA-UU |GUGAAAAGA CAUAGAGGGU 7021 GUAGAAUAAG UGGGAGG--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- cuuug)---- 7141 ---------C C-GACAGUGA AA-UACCACU |ACCUUUAU- -CGUUU-UUU UACUUAc--- 7201 ---------- ---------| --g GACAU-UGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAAUAAUA AC-)GCAG-G U|G|U|CCA- AAGGG-GAGC |UCAUC-AGG 7621 -A(ACA---- GAAA)UCUUG AGUAGA|AU( A|A--AAGG) GUAAAAG-CU C-CCUUGAUU 7681 -UUGAUUU(u c--agugu-- )GAAUACAAA CCAU(-GAAA )GUGUGG|CC --UAU|CGA- 7741 UCCUUUUG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -UUA-CUU(- -GGAA-U--U U---)----- ---------- 7861 -----AAG|U CAAGAG-GUG UC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UA U-UAUAG(CA -GC-)AUUUA AUAA-GUGU| UGGAU(UGUU C)ACCCACUA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGG-a<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->-uaGU UG-UU-GU-A AUAGUAAUUU AACU(UAGUA 8281 C(GAGA)GGA AC-)CGUUAA U|UCAGAUCA UUGGUAUUUG CUG|-UUAGC U(GAAA)AGC 8341 UAGUGCAGCG A-AGCUACC- AU-CUGC--C GGAGUACAGC U(GAACGCCU C-U-A)AGCU 8401 GGAACCCG-U GCUA--g--a aACA--ACGA C<------au uuuagucu-u uuuuaauaaa 8461 cuua--ggug --auuu(uuc g-)gaaucau uguguauug- ---auguacu g-----gguu 8521 augcgcagaa agauauuuuu guagcagacc -uagu-uauu gacaaauaa- aacaa----- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------c gacuaauuu> --|------( ---)------ 8701 ----aaauuu |gauug(-ca uacga)cu-u uaau-----a a-a|acuagg ugcuguaaau 8761 ag-cugagua ga----(ccu -agu------ ---------- ---------- ---------- 8821 ----)----u cuacgauc-u au-|ugaggc u|aau--ccu g--ggu-u-u ug---uucug 8881 c----|---- ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS R.racemo.1 9262 bp RNA RNA 11-JAN-191 DEFINITION Rhizomucor racemosus. ACCESSION No information KEYWORDS No information. SOURCE Rhizomucor racemosus. ORGANISM Rhizomucor racemosus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: M26190 LOCUS M26190 3698 bp UNA 15-SEP-1989 DEFINITION Mucor racemosus (Zygomycetes) 24S rRNA. ACCESSION M26190 REFERENCE 1 (bases 1 to 3698) TITLE 25S rRNA of Mucor racemosus: Primary and Secondary Structure BASE COUNT 1029 a 611 c 873 g 958 t 5791 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~aa// ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------auu )--ugaucug aaaucagg-u gGG----AUU 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UC AAUAAG-C-G G-AGGAAA-- --AGAAAAU( 541 AAC-A)AU-G AU|UUCCCUA GU---AAC(G GCGA)GUG-A A-----GAGG AAAG------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------aagu uggaaacugu 781 uuggc-(uua ---)--gcua aa-ccguauu guaaacugu- agaaacauuu ucc------- 841 ---uggca-- ---------- ---------- ---------- ---------c ac----caga 901 uuaa-uaa-- --g-ucc-u( u-(uggaac- )a)agg-c-- ---------- --------AU 961 --|C(AUG)G |AGGG-(UGA GAAU)-CCCG UC|--u-uug aucugagua- gu----uguc 1021 uuuugu---- -gauaugu-u uucaaa---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CAGGUU GUU(----UG 1141 GGAA)UGCAG CCUAAA---- uuGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUCU-- ---------- ---------- ---------- )CAC-CUAAA GCU----AAA 1381 UA-------- ---------- UUUGC-GAGA GACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAUG -AAA-AGAAC UUU(ga-aa- )AGAG-AGUU A-AACAGUAU G-UGAAAU-U 1501 GUUAA-AAG< gg---aaccg uuuggagc-c a--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- -------gac ugguuugcuu gua--aucaa 2221 ccuagaa(uu cg-)uuuug- ggugca-cu- -ugcaggcu- auaccu-gcc aaca-|acag 2281 uuuga-uuug gaggaaaaaa -uuaguagga auguagccu- -----(cucg -)------ag 2341 gugu-uaua- gccuacuau- ---cauacuc ug-gauu-gg acugaggaac g--cagcgaa 2401 u-gccuuuag gcaa--gau- -ugcugggug cuuucgcuaa uaaauguuag aauuucugcu 2461 ucggguggug cuaauguuua aaggaggaac acaucuagua uauuuuuuau ucgcuuaggu 2521 uguu-ggc-- ---------- --uuaa--ug acucuaaaug >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC CACCAUAAGU GCAAGUAu-u ugagu----( -------gac 2641 aa)------- ---------- ---a-cuca- ---------- --uaUGCGUA AG(GAAA)CU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------uug auacgaa-gu c--------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----uuuu-- ----)----- ---------- -------gau -ggcaguauc 3061 a--------- ---------- ---------- ---------- -------ccc gg-cgucgac 3121 gu-(--uuua -)-acugaa- auga-ccgag g]-------- ---------U AAAGCACUU- 3181 -AUG-AUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AA|U-AGGGU GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-AUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU CAAAUUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCUGC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-AAAA -ACUu--|-- -|-aaa---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------cg 3661 c-aguUUUAU -G|AGG--UA AA-GCGAAUG AUUAGAGGC- -----CUUGG GGAC--(gaa 3721 a-u)--GUCC U-UAA-|CCU AUUC-UCAAA CUUUA-AAUA |UGUAAGacg -accuguuu- 3781 -gcuuaauug aagcaggu-c auug------ ---------- ---------- ---------- 3841 ---------- ---------- ----AAUg-u g|AG-UUUUU -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- AACGAGA--- AGUUAAG--G 3961 U|GCCG-GAA U-A--CA-CG CUCAUcag-- ---------a caccac---- -AAAAGGUGU 4021 U--AGUUCAU CUAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- UAAGCGUGU| U|-------- --ACCCAU-- --ACUUCUC| (- -----)agca auaac-gAGU AGGC------ 4441 --AGG|-CG- UG-GA-GGuu uuuauaaac- -u-g-uua-- a------GAA GCUC-----u 4501 U-GGA(GUGA -)UCCGGAG- UGA|A-ACA| G--CCUCUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GACUGAAGU G-GAG|AAAG GUU|CCUGGA GA-ACA(-UU AUU)UG|GUC 4681 CAGGGUUAGU |-CGA-UCCU AAGA------ -------<-g auaggg(-aa au)ucc--gu 4741 uuuuucaaag c-aauca--- ---------- ---------- (aucu----) ---------- 4801 --------ug auucgccua- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA AGGGA-AA-C AGU(UUAAUA UU-)ACUGU| -AC----uag gaugagg-au 4981 uu[ucu---- ---------- ---------- ---------- -----gcg(- -guaa--)cg 5041 c--------- ---------- ---------- ---------- -----aa-a] uga-acuugg 5101 agac-----a uca--gugug ga-u-ccca- -GG-AAGA(G UUAUCUUU-) UCUUUU-|UA 5161 A-caacuuu- ------g-uu gua|g---ac cuug-aaaUC ----UG(UUU AG-)CAGGA- 5221 gaaaa-ggu- uuac------ ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----cggu-u gGU-----AG 5341 AGCAUAGUA( -cuuuu--)U GCUAUGUC-u ggugca---u -ucaca--ac gauC-CUUGA 5401 AAA-uccaag -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaaagaa-- ---------- ----uaauuu --uc-ucg-- cc-uaGUCGU 5581 A|CU--CAUA ACC(GCAGCA )GG|UCU-CC AAGGU(GAAA A)GCCUCU-| AGUUG-||A- 5641 UA-G--AACA AU-GUAG-AU A-AGGGAAGU CGGCAA-AAU -AGAUCCGUA AC(UUCG)GG 5701 AUAAGGAUU| GGCUCUAAG- ---------- -(-----)---- -------CUU AGAACU|G(- --GUA)CGGA 6601 CAAGGGGAAU C|-UGACUGU CU(AAUUA)A AACAUAGCAU UGCG|A--UG G|CCA(---g 6661 aaag)UGG-- ---------- --U-GUUGAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU AUCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUUU G---ACA-UU |GUGAAAAGA CAUAGAGGGU 7021 GUAGCAUAAG UGGGAGC--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -UUCG)---- 7141 ---------G C-GCCAGUGA AA-UACCACU |ACCUUUAU- -CGUUU-UUU UACUUAa--- 7201 ---------- ---------| --u GACAU-UGUC A-AGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAAAGAUA AC-)GCAG-G U|G|U|CCU- AAGGG-GGAC |UCAAC-GAG 7621 -A(ACA---- GAAA)UCUCG UGUAGA|AU( A|A--AAGG) GUAAAAG-UC C-CCUUGAUU 7681 -UUGAUUU(u c--agugu-- )GAAUACAAA CCAU(-GAAA )GUGUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -AAU-CUC(- -AAGA-U--U U---)----- ---------- 7861 -----GAG|G CUAGAG-GUG CC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUUCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UA C-UGAAG(CA -GA-)AUUCA GUAA-GCGU| UGGAU(UGUU C)ACCCACUA 8041 AUAGGGAACG UCAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGG-u<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->auuGG UA-UC-GU-A ACAGUAAUUG AAGU(UAGUA 8281 C(GAGA)GGA AC-)CCUUCA U|UCAGAUAA UUGGUAUUUG CGG|-CUGGU U(GAAA)GGC 8341 CAAUGCCGCG a-AGCUACC- AU-CUGC--U GGAUAAUG-C U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCA-U GCUG--a--a aACG--AUAC U<---acugu guuuugau-u guaccagaug 8461 aguacuaaua --aagc(uuc g-)gcuu--g aaa-accuua -cuugugagc ua-----ggu 8521 -uugguagc- ggaaau-gc- ugcu-agauc -uacuugc-u aa-ugauaau gcuaauac-- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------a ucaaaauga> --|------( ---)------ 8701 ----uaaauc |gcaug(-ca gacga)ca-u gaa------a ugg|acgggg uauuguaagu 8761 ac-uagagua gc----(cuu uguu------ ---------- ---------- ---------- 8821 ----)----g cuacgaug-u ac-|ugagau u|aag--ccu u--ugu-c-a uu---gaauu 8881 ugu--|---- ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS R.racemo.2 9262 bp RNA RNA 11-JAN-191 DEFINITION Rhizomucor racemosus. ACCESSION No information KEYWORDS No information. SOURCE Rhizomucor racemosus. ORGANISM Rhizomucor racemosus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: M26190 LOCUS M26190 3698 bp UNA 15-SEP-1989 DEFINITION Mucor racemosus (Zygomycetes) 24S rRNA. ACCESSION M26190 REFERENCE 1 (bases 1 to 3698) TITLE 25S rRNA of Mucor racemosus: Primary and Secondary Structure BASE COUNT 1029 a 611 c 873 g 958 t 5791 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~aa// ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------auu )--ugaucug aaaucagg-u gGG----AUU 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UC AAUAAG-C-G G-AGGAAA-- --AGAAAAU( 541 AAC-A)AU-G AU|UUCCCUA GU---AAC(G GCGA)GUG-A A-----GAGG AAAG------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------aagu uggaaacugu 781 uuggc-(uua ---)--gcua aa-ccguauu guaaacugu- agaaacauuu ucc------- 841 ---uggca-- ---------- ---------- ---------- ---------c ac----caga 901 uuaa-uaa-- --g-ucc-u( u-(uggaac- )a)agg-c-- ---------- --------AU 961 --|C(AUG)G |AGGG-(UGA GAAU)-CCCG UC|--u-uug aucugagua- gu----uguc 1021 uuuugu---- -gauaugu-u uucaaa---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CAGGUU GUU(----UG 1141 GGAA)UGCAG CCUAAA---- uuGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUCU-- ---------- ---------- ---------- )CAC-CUAAA GCU----AAA 1381 UA-------- ---------- UUUGC-GAGA GACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAUG -AAA-AGAAC UUU(ga-aa- )AGAG-AGUU A-AACAGUAU G-UGAAAU-U 1501 GUUAA-AAG< gg---aaccg uuuggagc-c a--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- -------gac ugguuugcuu gua--aucaa 2221 ccuagaa(uu cg-)uuuug- ggugca-cu- -ugcaggcu- auaccu-gcc aaca-|acag 2281 uuuga-uuug gaggaaaaaa -uuaguagga auguagccu- -----(cucg -)------ag 2341 gugu-uaua- gccuacuau- ---cauacuc ug-gauu-gg acugaggaac g--cagcgaa 2401 u-gccuuuag gcaa--gau- -ugcugggug cuuucgcuaa uaaauguuag aauuucugcu 2461 ucggguggug cuaauguuua aaggaggaac acaucuagua uauuuuuuau ucgcuuaggu 2521 uguu-ggc-- ---------- --u-uaa--u gacucuaaau g------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC CACCAUAAGU GCAAGUAu-u ugagu----( -------gac 2641 aa)------- ---------- ---a-cuca- ---------- --uaUGCGUA AG(GAAA)CU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------uug auacgaa-gu c--------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----uuuu-- ----)----- ---------- -------gau -ggcaguauc 3061 a--------- ---------- ---------- ---------- -------ccc gg-cgucgac 3121 gu-(--uuua -)-acugaa- auga-ccgag g]-------- ---------U AAAGCACUU- 3181 -AUG-AUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AA|U-AGGGU GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-AUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU CAAAUUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCUGC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-AAAA -ACUu--|-- -|-aaa---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------cg 3661 c-aguUUUAU -G|AGG--UA AA-GCGAAUG AUUAGAGGC- -----CUUGG GGAC--(gaa 3721 a-u)--GUCC U-UAA-|CCU AUUC-UCAAA CUUUA-AAUA |UGUAAGacg -accuguuu- 3781 -gcuuaauug aagcaggu-c auug------ ---------- ---------- ---------- 3841 ---------- ---------- ----AAUg-u g|AG-UUUUU -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- AACGAGA--- AGUUAAG--G 3961 U|GCCG-GAA U-A--CA-CG CUCAUcag-- ---------a caccac---- -AAAAGGUGU 4021 U--AGUUCAU CUAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- UAAGCGUGU| U|-------- --ACCCAU-- --ACUUCUC| (- -----)agca auaac-gAGU AGGC------ 4441 --AGG|-CG- UG-GA-GGuu uuuauaaac- -u-g-uua-- a------GAA GCUC-----u 4501 U-GGA(GUGA -)UCCGGAG- UGA|A-ACA| G--CCUCUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GACUGAAGU G-GAG|AAAG GUU|CCUGGA GA-ACA(-UU AUU)UG|GUC 4681 CAGGGUUAGU |-CGA-UCCU AAGA------ -------<-g auaggg(-aa au)ucc--gu 4741 uuuuucaaag c-aauca--- ---------- ---------- (aucu----) ---------- 4801 --------ug auucgccua- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA AGGGA-AA-C AGU(UUAAUA UU-)ACUGU| -AC----uag gaugagg-au 4981 uu[ucu---- ---------- ---------- ---------- -----gcg(- -guaa--)cg 5041 c--------- ---------- ---------- ---------- -----aa-a] uga-acuugg 5101 agac-----a uca--gugug ga-u-ccca- -GG-AAGA(G UUAUCUUU-) UCUUUU-|UA 5161 A-caacuuu- ------g-uu gua|g---ac cuug-aaaUC ----UG(UUU AG-)CAGGA- 5221 gaaaa-ggu- uuac------ ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----cggu-u gGU-----AG 5341 AGCAUAGUA( -cuuuu--)U GCUAUGUC-u ggugca---u -ucaca--ac gauC-CUUGA 5401 AAA-uccaag -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaaagaa-- ---------- ----uaauuu --uc-ucg-- cc-uaGUCGU 5581 A|CU--CAUA ACC(GCAGCA )GG|UCU-CC AAGGU(GAAA A)GCCUCU-| AGUUG-||A- 5641 UA-G--AACA AU-GUAG-AU A-AGGGAAGU CGGCAA-AAU -AGAUCCGUA AC(UUCG)GG 5701 AUAAGGAUU| GGCUCUAAG- ---------- -(-----)---- -------CUU AGAACU|G(- --GUA)CGGA 6601 CAAGGGGAAU C|-UGACUGU CU(AAUUA)A AACAUAGCAU UGCG|A--UG G|CCA(---g 6661 aaag)UGG-- ---------- --U-GUUGAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU AUCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUUU G---ACA-UU |GUGAAAAGA CAUAGAGGGU 7021 GUAGCAUAAG UGGGAGC--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -UUCG)---- 7141 ---------G C-GCCAGUGA AA-UACCACU |ACCUUUAU- -CGUUU-UUU UACUUAa--- 7201 ---------- ---------| --u GACAU-UGUC A-AGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAAAGAUA AC-)GCAG-G U|G|U|CCU- AAGGG-GGAC |UCAAC-GAG 7621 -A(ACA---- GAAA)UCUCG UGUAGA|AU( A|A--AAGG) GUAAAAG-UC C-CCUUGAUU 7681 -UUGAUUU(u c--agugu-- )GAAUACAAA CCAU(-GAAA )GUGUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -AAU-CUC(- -AAGA-U--U U---)----- ---------- 7861 -----GAG|G CUAGAG-GUG CC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUUCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UA C-UGAAG(CA -GA-)AUUCA GUAA-GCGU| UGGAU(UGUU C)ACCCACUA 8041 AUAGGGAACG UCAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGG-u<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->auuGG UA-UC-GU-A ACAGUAAUUG AAGU(UAGUA 8281 C(GAGA)GGA AC-)CCUUCA U|UCAGAUAA UUGGUAUUUG CGG|-CUGGU U(GAAA)GGC 8341 CAAUGCCGCG a-AGCUACC- AU-CUGC--U GGAUAAUG-C U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCA-U GCUG--a--a aACG--AUAC U<---acugu guuuugau-u guaccagaug 8461 aguacuaaua --aagc(uuc g-)gcuu--g aaa-accuua -cuugugagc ua-----ggu 8521 -uugguagc- ggaaau-gc- ugcu-agauc -uacuugc-u aa-ugauaau gcuaauac-- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------a ucaaaauga> --|------( ---)------ 8701 ----uaaauc |gcaug(-ca gacga)ca-u gaa------a ugg|acgggg uauuguaagu 8761 ac-uagagua gc----(cuu uguu------ ---------- ---------- ---------- 8821 ----)----g cuacgaug-u ac-|ugagau u|aag--ccu u--ugu-c-a uu---gaauu 8881 ugu--|---- ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (4)-Metazo 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS (5)-Eumeta 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS (6)-Bilate 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS (7)-Coelom 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS (8)-Deuter 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS (9)-Chorda 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS (10)-Cepha 9262 bp RNA RNA ~?~???? DEFINITION Cephalochordata. ACCESSION No information KEYWORDS No information. SOURCE Cephalochordata. ORGANISM Cephalochordata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS Bra.florid 9262 bp RNA RNA 10-JAN-1998 DEFINITION Branchiostoma floridae subsp. amphioxus Branchiostoma floridae. ACCESSION No information KEYWORDS No information. SOURCE Branchiostoma floridae subsp. amphioxus Branchiostoma floridae. ORGANISM Branchiostoma floridae. REFERENCE 1 (bases 1 to 6326) AUTHORS Jon Mallatt JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF061796 amphi.cons Length: 4275 November 7, 1997 08:25 Type: N Check: 8858 BASE COUNT 791 a 1083 c 1297 g 750 t 5341 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~ucu )-g-c|ggcc 241 c-g------g g(-------- ---------- ---------- ------uccg u--)cc---- 301 --cg-gggcc ---acgucug -g-cu-gagg gucggu(--- ----uuu--- --accuucaa 361 ucgcguc--- ---------- ------- aagaaaccaa cgugcacuca acuc------ 421 ---------- ---------- ---------- )cucgaccuc agcucagg-c gAG----ACG 481 AC|CCGCCGA -A--UU|UA( AGCA)UA-UU ACUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-A)AG-G AU|UCCCUCA GU---AAC(G GCGA)GUG-A A-----GCGG GAAA------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -----gcgcc g--aauccc- 781 cgcuc-(cca cg-)--gggc gc-gggaaau guggcguuc- gggaggugcu cuccguccgu 841 ---cgac--- ---------- ---------- ---------- ---------- --------cg 901 uugcccag-- --g-ucc-u( u-(cugauc- )g)agg-c-- ---------- ----cucuCC 961 --|C(AGA)G |CGGG-(UGU CAGG)-CCCA UG|--gcggc gacggyggcg u----ucg-- 1021 ---------g ucugc-gc-c uccucg---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GUU(----UG 1141 GGAA)UGCAG CCCAAA---- GCGGGA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAACUC-- ---------- ---------- ---------- )CUC-CUAAG GCU----AAA 1381 UA-------- ---------- CGGAC-ACGA GACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGUUG -AAA-AGAAC UUU(ga-ag- )AGAG-AGUU C-AAGAGUAC G-UGAAAC-C 1501 GCUAA-GAG< gu--aaa-cg gguggg-ccc gcaagguc-c gcccggagga uucaggcgg- 1561 ----cguc-u cugcgccccg ccggccgagc aagga-ucgc aagaccuauc ggucggcguc 1621 gaggcgugug gac------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------c cgcugcacuu cuuccg---- ggcggag-cg ccgcgac-cg guucgacggc 1861 ggccacgucc ccgcggaagg ugcccggggc ccucgggucu ccggaguuau agccgcggug 1921 cgugcggcgc ccgcugucgg accgaggaca ggcaaucgac cgccgcgccu gcccgucgcc 1981 ccgcuucgcg gcggggcaag ggccgggccc ccguccccuu cgugcggugu uuccaccgcg 2041 gcggacuguu cccagugcgu cgcaacggcc cgcgcgucgc cggcgacggg ugcgccacgc 2101 agggc----- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ----gcccgg g-gucugcgg 2521 cg-------- ---------- agu-ccgguc g-cccacccg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACGCGUGC GCGAGUC--a uugggu---( guugu-acga 2641 a-)------- ---------- -----accca ---------- --gaGGCGCA AU(GAAG)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 -agggccg-- -(uccgu--- --)---cggu cc-----gag gugggau-cc ccgccgu--- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( cucc------ ----)----- ---------- gcggcgcggg cgcaccaccg 3061 gccgaucucg ------accg -------(-c uccgu-)--- ---------- ---------- 3121 -cggu--gag gucg------ --------cg c]-------- ---------U AGAGCGUGC- 3181 -GCG-UUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCCG- AG|C-AGGGC GAAGCCAGGG 3241 (GAAA----- -----)CCCU GGU-GGAGGU CCG-UA---G CG-AUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU CAAACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGC -ACUC--|-- -|--ugu--- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------c 3661 gcaguuUUAU -C|UGG--UA AA-GCGAAUG AUUAGAGGU- -----cUUGG GGCC--(gaa 3721 a-c)--GACC U-CAA-|CCU AUUC-UCAAA CUUUA-AAUU |GGUAAGgug -uccgacuc( 3781 gcucgauug) gagccgggc- ---------- ---------- ---------- ---------- 3841 ---------- ---uu-(g-- gaau)--gc- g|ag-ugcuc -AGU-GGGCC -AcU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G CUGCGG(GA- UGAA)CCG-- AACGCCG--- GGUUAAG--G 3961 C|GCCC-gau a-CG-GA-CG Cucau-ca-- --------ga ccccag---- -AAAAGGUGU 4021 U--GGUUGAU ACAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- GGAGCGUCG| A|-------- --RCCCAU-- --ACCCGGC| (- -----)-gcc gcgAC-GAGU AGGA------ 4441 --GGG|-CCG CC-GC-GG-- --------U- -GAG-CGU-- C------NAA GCCU-----C 4501 G-GGC(GCGA -)GCCCGGG- UGG|A-GCC| G--CCGCGG- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- c(gagaa--- ---------- ---------- ---------- 4621 --)cuuuGAA |GACUGAAGC G-GAG|AAGG GUU|CCAUGU GA-ACA(-GC AGU)UG|GAC 4681 AUGGGUCAGU |-CGG-UCCU AAGU------ -(----)--- 4921 ----UC-GAA AGGGA-AU-C GGG(UUAACA UU-)CCCGA| -ac---gcga a--cgcg--g 4981 ag[augg--- ---------- --------gc gc-----c-- -c---ggc(- uucgc--)gc 5041 ugggu----- ---cgc---- ------ccgg ugc-g(gcaa -)cgcaa-g] cga-acucgg 5101 agac-----g ucg--gccug gg-c-cccg- -GG-AAGA(G UUCUCUUU-) UCUuug-|u- 5161 a-aggggc-- ---------- gcg|ug--CC CUGG--AAUC ----GG(UUC G--)CCCGG- 5221 AGAUA-GGG- acag------ ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- --------c- ----ugcc-c cgu-----aa 5341 agcaccgcg( -gcucu--)u gcgguguc-c ggugcg---c -ucagg--uc ggcC-CUUGA 5401 AAA-uccgag -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------g gagaggcg-- ---------- --ugcgauuu --uc-gcg-- uc-gguCCGU 5581 A|CC--CAUA ACC(GCAGCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| AGUCG-||A- 5641 UA-G--AACA AU-GUAG-GU A-AGGGAAGU CGGCAA-GCC -GGAUCCGUA AC(UUCG)GG 5701 AGAAGGAUU| GGCUCUAAG- ---------- -(-----)---- -------CUU AGAACU|G(- --GUA)CGGa 6601 CCAGGGGAAU C|-CGACUGU CU(AAUUA)A AACAUAGCAU UGCG|A--UG G|CCG(---u 6661 cggg)CGG-- ---------- --U-GUUGAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU AUCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCC G---ACU-CU |GUGAAGGGA CAUGAAAGGU 7021 GUAGCAUAGG UGGGAGgcu- ---------- --<------- ---------- ---------- 7081 (--cuug--- )--------- ---------- ---------- ------->(- -----)---- 7141 -------ggc c-GUCGGUGA AA-UACCACU |ACUCUCAU- -CGUUU-CUU UACUUAC--- 7201 ------(--- --)------| --a GACAG-UGUC A-GGCG-GGG AG-UUUGACU G(GGG)CGGU 7561 A-C|AUCUGU (CAAAGAGUA AC-)GCAG-G U|G|U|CCU- AAGGC-GAGC |UCAGC-GAG 7621 -G(ACA---- GAAA)CCUCG CGUGGA|GC( A|A--AAGG) GCAAAAG-CU C-GCUUGAUU 7681 -UUGAUUU(u c--aguac-- )GAAUACAGA CCGU(-GAAA )GCGUGG|CC --UAU|CGA- 7741 UCCUUUUG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -ACU-UUA(- -AGAG-U--U U---)----- ---------- 7861 -----UAA|G CAAGAG-GUG UC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCGGCCAAGC G(UUCAU)AG CGACGUCGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GA-)AUUCA CCAA-GCGU| UGGAU(UGUU C)ACCCACUa 8041 auAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGAag<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->--uGU UG-UU-GC-G AUGGCAAUCC UGCU(CAGUA 8281 C(GAGA)GGA AC-)CGCAGG U|UCAGACAU UUGGuucagG CGC|-UCGGC U(GAUG)AGC 8341 CGGUGGUGCG A-GGCUACC- AU-CUGR--G GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCC-G CCCA---gaa agcA--ACGA U --|------( ---)------ 8701 -----gaauc |cucug(-ua gacga)cu-u ugaug----c agc|ucgggg ugucguaccu 8761 ag-u~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (10)-Uroch 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS H.momus 9262 bp RNA RNA 11-JAN-191 DEFINITION Herdmania momus. ACCESSION No information KEYWORDS No information. SOURCE Herdmania momus. ORGANISM Herdmania momus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X53538 ID HMRDNAS standard; DNA; INV; 7967 BP. AC X53538; DE Herdmania momus rDNA for 18S, 5.8S and 26S ribosomal RNA. BASE COUNT 837 a 948 c 1177 g 759 t 5541 others ORIGIN 1 |--------- ---------- ---------- -----GACUC UCAACGGUGG AUC|ACUCGG 61 |CUCGCGA|G U|-CGAUGAA GGA|CGCA(- -GCUA-AG)U |GC-GAGAAG UG-gugu|[- 121 gaauugcaga acacauugaa ---------- ---------- ---------- -------]-- 181 ---------- ---------- ---cgucg|A C-CUUC-GAA Cgc-(gaaug )-g-c|gguc 241 ucg------g g(-------- ---------- ---------- -----uuaa- ---)uc---- 301 --cg-ggacc ---acgucug -c-cu-cagg guug--(--- ---cga---/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --------ua )--cgaccug aguucagg-c gAG----AGC 481 AC|CCGCUGA -A--UU|UA( AGCA)UA-UU AUUAAG-U-A G-AGGAAA-- --AGAAACC( 541 AAC-C)GG-G AU|UACCG-A GU---AAC(- GC-A)GUG-A A-----GUGG -AAG------ 601 ---------- ---------- ---------- ---------- -AGUCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -----acguc g--aaucugc 781 gcgcuu(gug c--)-gagcg cg-c-gaagu gugacguac- ggaagucccu --gu-----g 841 cgaccguc-- ---------- ---------- ---------- ---------- ggc----gag 901 cgcc-ggu-- --g-ucc-u( u-(cugauc- )g)agg-c-- ---------- -cuc--agCC 961 --|C(GUA)G |CAGG-(UGU CAGG)-CCUA UA|--agggu guuggccg-c g-----gucg 1021 cu-------- gc--gggu-c uucccg---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GUU(----UG 1141 GGAA)UGCAG CCCAAA---- GCGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAACUC-- ---------- ---------- ---------- )CAC-CUAAG ACU----AAA 1381 UA-------- ---------- CUGUU-GCGA GACCGAUAGA GAAC-AAGUA CC(GUGA)G- 1441 G--AAAGUUG -GAA-AGCAC UUU(ga-ag- )AGAG-AGUU C-AAAAGUAC G-UGAAAC-C 1501 GUUGA-GAG< gc---aaacg agagggc-cc g-ucagu--c gcccgg-ccg cuuucaguug 1561 aggcggcgg- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 -----cggug cgcggca-cc gguccgc--- cgcggacgcu cacgcgc-cg gcuccggguc 1861 ggccaacgcg caccgccuca gcgcacuagc accgggcgag agcacgaccg cuccggcccg 1921 aagaccggcc gcucgccaag guagcuccgc ccggcagugu uacaggacgg ggcguacgcc 1981 gcgucgcgac gugaaagacu gugcgcgucc ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 -----auugg gagucguug- ucgucggccg gcgggcugcg cgca---cug uucucagu-g 2401 c-acgcugac gcu---ucgu gccgcacgau gcgaccuccu ---------- ---------- 2461 ---------- ---------- ---------- ---------c gcgacgccgg g-guc-ugug 2521 guc------- ---------- acg-ucggcc a-cccucucg >------A-C CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUGAAC GCGAGUCG-u cgggu----( ---ag-uacg 2641 aa)------- ---------- ---a-cuc-- ---------- gg-UGGCCAG AU(GGAA)GU 2701 Gg[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------g 2881 aaggccggc- -(ucgg---- --)--uccgg cu-----gag gucagau-cc gugcgu---- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ----uugca- ---------- ---------- --gcgg-cgg ggcacgaucg 3061 gccgaucgcg ------cccg -------(-u agcgu-)--- ---------- ---------- 3121 -cggg--gcg gucg------ --------cg c]-------- ---------A AGAGCGGUC- 3181 -AUG-UUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- GG|A-AGGUC GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGA CCG-UA---G CG-AUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU CAUAUUUGGG UAUAGGG--- C--------- ---------- ---(GAAA-- 3361 --G)A--gCU AAU-CGAACC AUCUAGUAGC UGGUUCCUUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-U-GC -uugg--|-- -|g------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------u 3661 cgcauUUUAU -C|UGG--UA AA-GCGAAUG AUUAGAGGC- -----cUUGG G-AC--(gaa 3721 a-c)--GUCC U-CAA-|CCU AUUC-UCAAA CUUUA-AAUU |CGUAAGaag -cc-ggcuc( 3781 gccuggcug) gagucggg-c gucg------ ---------- ---------- ---------- 3841 ---------- ---------- ----AAUgcg a|gu-cGC-- -AGU-GGGCC -ACU-CUUG( 3901 G-UAAG)CAG GAC-UGGC-G AUGCGG(GA- UGAA)CCG-- AACGCCG--- GGUUAAG--G 3961 C|GCCG--a- g-C--GA-CG CUC-U-ca-- --------ga gcccac---- -AAAAGGUGU 4021 U--GGUUGAU CUAGACA-GC AGUACGGUGG CC(AUGGGGA GUC)GGAAUC CG|U(UAA)G 4081 |GAGUGU(GU AACA)AC|aa cUCACCUGCC CGAAUCAACC AGC|CC-UGA AA---UGGAU 4141 G--GCG-CU- GGAGCGUCG| G|-------- ---CCUAU-- --ACCCGGC| (- -----)-ggu ccgac-gAGU AGGA------ 4441 --AGG|-CCg CG-GC-GG-- -------cg- -ccggcgu-- c------GAA GCGC------ 4501 G-AGC(GUGA -)GCUCGCG- UGG|aggag| cagCCGUCG- GUGC-AGA-U CUUGGU|GGg 4561 UAGUAGCAAA -UAUUCAAA- U(gagag--- ---------- ---------- ---------- 4621 --)CUUUGAA |GGUCGAAGU G-GAC|AAGG GUU|CCAUGU GA-ACA(-GC AGU)UG|AAC 4681 AUGGGUCAGU |-CGG-CCCU AAGG------ -(----)--- 4921 ----CC-GAA AGGGA-AU-C UGG(UUAAUA UU-)CCCGA| -AC----cuc gagacgg--- 4981 ag[auu---- ---------- ---------- -------g-- -g---ugc(- -uucggg)gc 5041 gcc------- ---------- ---------c a-g-u(gcgg c)accaa-c] uga-acucgg 5101 agca-----g cug--gcgug gg-u-cccg- -GG-AAGA(G UUCUCUUU-) UCUUGG-|UA 5161 A-ggagca-- ---------- gac|---gcC CUGG--AAUC ----GG(uu- gc-)CCGGA- 5221 GAcUA-GGGc ucgaa----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- -----gcu-c cGU-----AA 5341 AGCACCGCU( --cucu--)U GCGGUGUC-c ggugaa---c -ccgcg--uu ggcC-CAUGA 5401 AAA-uccgag -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggagaugg-- ---------- --uguagu-- --uc-gug-- cg-aggCCGU 5581 A|CC--CAUA UC-(GCAGCA )GG|UCUUCC AAGGU(GAAC A)GCCUCU-| --Ccg-||ac 5641 ---G--AACA AU-GUAG-GC AaAGGGAAGU CGGCAA-AUC -AGAUCCGUA AC(UUCG)GG 5701 AAAAGGAUU| GGCuuccuc- ---------- -(-----)---- -------ggg gua-cu|-(- -----)-caa 6601 --GGGGGAAU C|-CGACUGU UU(AAUUA)- AACAAAGCAU ggc-|A--UG G|CGC(a--a 6661 cccg)GCG-- ---------- --U-G-UGA- GCGAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC UCUGU-CCCU GUCUGCUAUC 6901 CG|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCG -G-AAU-UAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCU GCCgACU-UU |GUGAAGAGA CAUGAGAGGC 7021 GUAGGAUAAG UGGGAGCC-- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- --cuc)---- 7141 --------GG CcGACGGUGA AA-UACC--- |ACUCCCAU- -CGUUU-UUU UACUUAu--- 7201 ------(--- --)------| --g -ACAG-UGUC A-GGCG-GGG AG-UUUGACU G(GGG)CGGU 7561 A-C|AUCUGU (CAAAGUGUA AC-)GCAG-G U|G|U|CCU- AAGGU-GAGC |UCAGC-GAG 7621 cG(ACG---- GAAA)CCUCG CGUAGA|GC( A|A--AAGG) GCAAAAG-CU C-ACUUGAUU 7681 --CGAUUU(u c--aguau-- )GAAUACGGA -CGC(-GAAA )GCG-GG|CC --UAU|CGA- 7741 UAauuuug-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -aaC-UUG(- -CGAG-U--u uu--)----- ---------- 7861 -----CAA|G CAAGAG-gug uC|aGA--AA AGUUAACA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GA-)AUUCA CCAA-GCGU| UGGAU(UGUU C)ACCCACUA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGU-a<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->-guGU UG-UU-GC-G AUAGUAAUUC UGCU(CAGUA 8281 C(GAGA)GGA AC-)CGCAGA U|UCAGACAU UUGGUUCAUG CGC|-UUGGC U(GAUA)AGC 8341 CAAUGGUGCG A-AGCUACcc auccug---G GGGUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCC-g CCUA---agc aGUG--ACGA U --|------( ---)------ 8701 -----aaauc |auuug(-ca gacga)cc-c uaguu---ga aga|ucgagg ugucguagcc 8761 ac-uagagca gu----(ucu -c-------- ---------- ---------- ---------- 8821 ----)----a cugcgauc-u gu-|ugaaag u|uag--ccu c--cag-auc ua--cga-uu 8881 ugu--|---- ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (10)-Verte 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS (11)-Agnat 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS Pet.marinu 9262 bp RNA RNA 10-JAN-1998 DEFINITION Petromyzon marinus. ACCESSION No information KEYWORDS No information. SOURCE Petromyzon marinus. ORGANISM Petromyzon marinus. REFERENCE 1 (bases 1 to 6326) AUTHORS Jon Mallatt JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF061798 lamp.con Length: 4463 November 4, 1997 10:15 Type: N Check: 9226 BASE COUNT 791 a 1142 c 1413 g 787 t 5129 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~cgaCGACUC UUGGCGGUGG AUC|ACUCGG 61 |CUCGUGC|G U|-CGAUGAA GAA|CGCA(- -GCCA-GC)U |GC-GAGAAG UA-AUGU|[- 121 gaauugcagg acacauugau ---------- ---------- ---------- -------]-- 181 ---------- ---------- ---caucg|A UACUUC-GAA Cgc-(acauu )-g-c|ggcc 241 ccg------g g(-------- ---------- ---------- -----aguuc uuu)cc---- 301 --cg-gggcc ---acgccug -u-cu-gagg gucgcc(--- ----ccu--- --uuaucaau 361 cguccuccug cccag----- ------- cccgugacuu gcgcaucgca g--------- 421 ---------- ---------- ---------- )ugcgaccuc agaucaga-c gUG----GUG 481 AC|CCGCUGA -A--UU|UA( AGCA)UA-UU ACUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-C)AG-G AU|UCCCCCA GU---AAC(G GCGA)GUG-A A-----CAGG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -----ucgcc g--aauccc- 781 cggcug(cug cg-)gugggc gc-gggaguu guggcgua-c gggagagcgc -cugcucgg- 841 ---ugcugc- ---------- ---------- ---------- ---------- ------ucgg 901 gggcccaa-- --g-ucc-u( u-(cugauu- )g)agg-c-- ---------- ---cuccuCC 961 --|C(GAG)G |ACGG-(UGU CAGG)-CCGG UG|--guggc ccccggcgug c----ccg-- 1021 --------gu cgagc-uu-c ucccug---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GUU(----UG 1141 UGAA)UGCAG CCCAAA---- GCGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAACUC-- ---------- ---------- ---------- )CAU-CUAAG GCU----AAA 1381 UA-------- ---------- CGGGC-AUGA GACCGAUAGA CGAC-AAGUA CC(GUGA)G- 1441 G-GAAAGUUG -AAA-AGAAC UCU(ga-ag- )AGAG-AGUU C-AAGAGGAC G-UGAAAC-C 1501 GUCGA-GAG< gu--aaa-cg gguggggucc gcgcaguc-c gcccggagga uucagccgug 1561 gug--cucaa gggccggccg cuggugccgu augaacggau ucaccauggc caugcucccc 1621 gcugcucgcg gcgggcgugu gugccuggug gaccgcggug cucgguggag ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- -------ccg 1801 gccggcgcc- uggcgcacuu ccuccgcgcu gguggug-cg ccgcgac-cg guuuucgggg 1861 cggccaggau cgccgugggg ucugugggcu ggagguuuug ugccuccggc cggccccugg 1921 ugggauggug uucg------ ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- -------ccc gcccugugac 2101 cgaggga--- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- -gagagaccg ccaccgcgcc cgcuccgcuc 2341 uucggugggg uacguggaaa cgcgcccccc gccgcagugu cggggccggg gugccccgcu 2401 ccccgccggg uccguugacc ggugcggacu guucccagug cgucaccgac cauggcucgg 2461 cgcucggcug cgggugugcc accgacugcg ggc------- ----gcccgg g-gucugcgg 2521 ug-------- ---------a ggg-ucggcc a-cccacccg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACACGUAC GCGAGUCc-- agggg----( --agaguuga 2641 aa)------- ---------- ------cccc ---------- --gcGGCGCA AU(GAAG)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 -aggccgg-- -(auucgucg --)---ccgg cc-----gag gugggau-cc gcccgc---- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( gccuugga-- ----)----- ---------- --gcgggugg cgcaccgccg 3061 gcccgccucg ------cccg -------(-c ugcgu-)--- ---------- ---------- 3121 -cggg--gag gugg------ --------ag c]-------- ---------G AGAGCGUAC- 3181 -GUG-UUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- GG|C-AGGGC GAGGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC CCG-UA---G CG-GUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU CCGACCUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGC -GCUC--|-- -|-ggcagg- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------a 3661 gcaguuUUAU -C|CGG--UA AA-GCGAAUG AUUAGAGGU- -----cUUGG GGCC--(gaa 3721 a-c)--GAUC U-CAA-|CCU AUUC-UCAAA CUUUA-AAUG |GGUAAGacg -cccgacuc( 3781 gcuggcuug) gagccgggc- ---------- ---------- ---------- ---------- 3841 ---------- ---au-(g-- gaau)--gc- g|ag-ugccc -AGU-GGGCC -AcU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G CUGCGG(GA- UGAA)CCG-- AGCGCCG--- GGUUAAG--G 3961 C|GCCC-cac --gACGA-CG Cucau-ca-- --------ga ccccag---- -AAAAGGUGU 4021 U--GGUCGAU AUAGACA-GC AGGGCGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- GGAGCGUCC| G|-------- --GCCCAU-- --ACCCGGC| (- -----)-gcc gcgac-gAGU AGGA------ 4441 --GGG|-CCG CU-GC-GG-- --------u- -gaG-CGC-- G------GAA GCCU-----A 4501 G-GGC(GAGG -)GCCCGGG- UGG|A-GCC| G--CCGCAG- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- c(gagaa--- ---------- ---------- ---------- 4621 --)cuuuGAA |GGCCGAAGU G-GAG|AAGG GUU|CCAUGU GA-ACA(-GC ACU)UG|GAC 4681 AUGGGUCAGU |-CGG-UCCU AAGG------ -(----)--- 4921 ----UC-GAA AGGGG-AU-C GGG(UCCAGA UC-)CCCGA| -Ac--ccuca g--agcggag 4981 --[acggac- -----gcaa- ---------- ---------- ----cccc(- -ucgc--)gg 5041 gg-------- -------ggc gc----ccgg ugc-g(guaa -)cgcaa-a] cga-gcccgg 5101 agau-----g ccg--gcggg ga-c-cccg- -GG-GAGA(G UUCUCUUU-) UCUugg-|ug 5161 a-agggca-- ---------- ggg|cg--CC CUGG--AAUG ----GG(UUC G--)CCCCG- 5221 AGAUA-GGG- gccu------ ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- --------g- ----cgcc-c ugc-----ag 5341 agcgccgcg( -gcucc--)u gcggcguc-c ggugag---c -ccucg--uc ggcC-CUUGA 5401 AAA-uccggg -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------g gagagagcu- ---------- ---cugaauc --uc-gcu-- uu-gggCCGU 5581 A|CC--CAUA UCC(GCAGCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| GGCAU-||gu 5641 UG-G--AGCA AU-GUAG-GU A-AGGGAAGU CGGCAA-GCC -GGAUCCGUA AC(UUCG)GG 5701 ACAAGGAUU| GGCUCUAAG- ---------- -(-----)---- -------CUU AGAACU|G(- --GUG)CGGa 6601 CCAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU CGCG|A--UG G|Cuc(g--c 6661 gaac)ggg-- ---------- --U-GUUGAC ACGAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----UGAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUGAA CGAGAUUCCC ACUGU-CCCU AUCUACUAUC 6901 CA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCG -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGCCU G---GCA-CG |GUGAAAAGG CAUGAGAGGU 7021 GUAGGAUAAG UGGGAGgu-- ---------- --<------- ---------- --gcucgucc 7081 (--cucgu-- )ggcucuggg u--------- ---------- ------->(- -----)---- 7141 --------gc c-GGCGGUGA AA-UACCACU |ACUCUGAU- -CGUUU-UUU CACUUAC--- 7201 ------(--- --)------| --g GACAG-UGUC U-GGUG-GGG AG-UUUGACU G(GGG)CGGU 7561 A-C|ACCUGU (CAAACGGUA AC-)GCAG-G U|G|U|CCU- AAGGC-GAGC |UCAGG-GAG 7621 -G(ACA---- GAAA)CCUCC CGUGGA|GC( A|G--AAGG) GCAAAAG-CU C-GCUUGAUC 7681 -UUGAUUU(u c--aguac-- )GAGUACAGA CCGU(-GAAA )GCGGGG|CC --UCA|CGA- 7741 UCCUUUUG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -ACU-UUU(- -UGGG-U--U U---)----- ---------- 7861 -----UAA|G CAAGAG-GUG UC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCGGCCAAGC G(UUCAU)AG CGACGUCGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GA-)AUUCA CCAA-GCGU| UGGAU(UGUU C)ACCCACUa 8041 auAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGCug<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->--uGU CG-UC-GC-A AUAGUAAUCC UGCU(CAGUA 8281 C(GAGA)GGA AC-)CGCAGG U|UCAGACAU UUGGcgcguG UGC|-UUGGC U(GAGG)AGC 8341 CAACGGUGCG A-CGCUACC- AU-CUGA--G GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 CGAAUCCC-C CCUA----ga cgcG--ACGA U --|------( ---)------ 8701 -----aaauc |auucg(-ua aacga)cc-u gguuc----u ggc|ucgggg uuucguaagu 8761 ag-caga~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Ept.stouti 9262 bp RNA RNA 10-JAN-1998 DEFINITION Eptatretus stouti. ACCESSION No information KEYWORDS No information. SOURCE Eptatretus stouti. ORGANISM Eptatretus stouti. REFERENCE 1 (bases 1 to 6326) AUTHORS Jon Mallatt JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF061797 hag.con Length: 5751 November 7, 1997 08:32 Type: N Check: 7080 BASE COUNT 812 a 1612 c 1914 g 974 t 3950 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~auu )-g-c|ggcc 241 c-g------g g(-------- ---------- ---------- ------cuac aca)cc---- 301 --cg-gggcc ---acgccug -u-cu-gagg gucgcu(--- ----cga--- --uuaucgau 361 cgggagcacg gguguccc-- ------- guuucuccgg gagcacuucg auguu----- 421 ---------- ---------- ---------- )ugcgaccuc agaucaga-c gUG----ACG 481 AC|CCGCUUA -A--UU|UA( AGCA)UA-UU ACUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-G)AG-G AU|UCCCUCA GU---AAC(G GCGA)GUG-A A-----CAGG GAAA------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -----gcgcc g--aauccc- 781 cgcucg(cac ua-)-cgggc guguggaacu guggcgua-c aggag--cuc -gcaccuccc 841 ggugu-cgc- ---------- ---------- ---------- ---------- ------ucgg 901 ggguccaa-- --g-ucc-u( u-(ucgauc- )g)ggg-c-- ---------- ----cucCUC 961 --|C(AUG)G |ACGG-(UGG CAGG)-CCGG UG|cgguggc ccccgacgug -----ccggg 1021 ---------g ucgggu---c ucuuug---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GCU(----UG 1141 GGAA)UGCAG CCUAAA---- GCGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAACUC-- ---------- ---------- ---------- )CAU-CCAAG GCU----AAA 1381 UA-------- ---------- CGUGC-ACGA GGCCGAUAGC CGAC-AAGUA CC(GUGA)G- 1441 G-GAAAGUUG -AAA-AGAAC UCU(ga-ag- )AGAG-AGUU C-AAGAGUUC G-UGAAAC-C 1501 GUUGC-GAG< gu--aaa-cg ggugggaucc gcgcgguc-c gcccggagga gucagccgug 1561 g-----cguc ggucgcccgu cuuggguguc gcggu-accc guc-ccgcg- cccggacgcc 1621 gucgcgucac ccguccccuc gugggucggg ugcgcuucga cgaucccggu caacgugugg 1681 -gcgggccuc gccccucggc ggacgcggc- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---cgccgcc cggugcacuu ucuccgcg-- ugcggug-cg ccgcgac-cg guuccggagg 1861 cggccag--- ---------- ---------- --------ga gcgccugggu uuuucgaccg 1921 agagcuuugc gauuugucga ggcgccgugg cggggccugc gaccgguggu cuccgcgucg 1981 cgccgcugcg cgucgugggu gauccaccgg gucc------ ---------- ---------g 2041 cgcccgucac gggggccugg cgagagcguu cgcucg---- ---------- -ccccgggac 2101 cgagggaaac gggacggaaa uaaaagucug acgccgcgcc gcgugcgggc gugguuucgu 2161 gaaagcggcc gcgucucgcg cguccggggc gccucygccg cccgccguuc cgucgacugg 2221 cggcgaacug uucucagugc gucgucgacc gcggugcggc gccgcggugc cgugcgccuc 2281 cggcaggggc cguuuccgcg uccgcguggc cggcgugccg agggcuucgu gcgucggucg 2341 gggcccuacc uacggugggg gggcucgggu ccuccggggc ccguccucuc cccguucggg 2401 uuucccggcc gcgcgcgcgu cuuccucgcg ugugucgugu cgcgcguugg cggugcgguc 2461 cc-------- ---------- ---------- ---------c g-gcgcucgg g-gucugcgg 2521 cg-------- ---------- agggucggaa u-cccacccg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACACGUGC GCGAGUCg-a aggg-----( -cucgaacga 2641 aa)------- ---------- -----ccccg ---------- --gaGGCGCA AU(GAAA)GU 2701 Gu[gcggugc gcgcgcgguc gggucaaggc gucccauccg cucggcggcc gggucgggcg 2761 gugcggguuc gggugcgarc gugguguucc ucggguccgg uggccucgug ccgccucucu 2821 ccgugggcau ccucgcuucg cgucucgucu cgugccguuu cggcucgaac cgccggcaag 2881 cggugagggc gccccucgug cuggcgcgcg acaccgucgg gcgggau-cc ucccccc--- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( cguggca--- ----)----- ---------- -ggggcgagg cgcaccgccg 3061 gcccguccug cgc-ucuccg --uccgg(-c gugag-)ccg g--------- ---------- 3121 -cggaggcgg acgg------ --------ag c]-------- ---------c acAGCGUAC- 3181 -UUG-UUGGU ACCCGAAAGA U-GGUG-AGC UACG-CCCG- GG|C-AGGGC GAAGCCAGGG 3241 (GAAA----- -----)CCCU GGU-GGAGGC CCG-CA---G CG-GUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU ACGACCCGGG CGUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CC AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGa -cucu--|-- -|cgcuggau g--------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------c 3661 gcaguuUUAU -C|CGG--UA AA-GCGACUG ACGAGAGGC- -----aUUGG GGCC--(gaa 3721 a-c)--GGCU U-CAA-|CCU AUUC-UCAAA CUUUG-AAUG |GGUAAGacg -cccggcuc( 3781 gcagcuucg) gagccgggc- ---------- -gcgcgcguc gugcgccgu- -(gcgc)--g 3841 cggcgcgugg ---gc-(gaa gaau)--gcg a-gc-ugccc -AGU-GGGCC -AcU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G CUGCGG(GA- UGAA)CCG-- AACGCCG--- GGUUAAG--G 3961 C|GCC-gaac g-C--GAaCG Cucau-cg-- -------gag cccugg---- cAAAAGGUGU 4021 U--GGUUGGU CGAGACA-GC AGGGCGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACG)AC|-- -UCACCUGCC -GAAUCAACU GGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- cgagcgucg| g|-------- --GCCUAU-- --ACCCGGC| (- -----)-gcc gcgAC-GAGU AGGA------ 4441 --GGG|-CCG CC-GC-GG-- --------U- -G-g-cgc-- u------GAA GCCU-----U 4501 G-GGC(GUGG -)GCCCGGG- UGG|A-CCC| G--CCGCGG- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- c(gagaga-- ---------- ---------- ---------- 4621 --)cuuuGAA |GGCCGAGGU G-GAG|AAGG GUU|CCAUGU GA-ACA(-GC GCU)UG|GAC 4681 AUGGGUGAGU |-CGG-UCCU AAGU------ -(----)--- 4921 -----C-GAA AGGGA-AU-C GGG(CUCAGA UC-)CCCGA| -AC----cca g--agugcgg 4981 ag[a-aagg- -----ucggg ggaugguucg cg-------- ------ug(- -cuug--)ca 5041 cuuugugcuc gucguggccg cccaacgu-- ugc-g(guaa -)cgcaaag] cgc-gccugg 5101 agac-----g gcg--gcggg gg-u-gccg- -GG-AAAA(G UUUUCUUU-) UCUucg-|ug 5161 a-agggac-- ---------- ggg|cg--CC CUGG--AAUG ----GG(UUU U--)ACCCG- 5221 AGAUA-GGG- gccc------ ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- --------g- ----cgcc-c ugc-----ag 5341 agcgucgcg( -gcucc--)u gcggcguc-c ggcggg---c -ccucg--cc gccC-CUUGA 5401 AAA-uccggg -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------u gcgaugac-- ---------- ----ugaauc --uc-gcu-- cu-gggCCGU 5581 A|CC--CAUA UCC(GCAGCA )GG|UCU-CC AAGGU(GAAC A)GC-UCU-| GGUGC-||ga 5641 UG-G--AACA AU-GUGG-GU A-AGGGAAGU CGGCAA-GCC -GGAUCCGUA AC(UUCG)GG 5701 ACAAGGAUU| GGCUCUgag- ---------- -(-----)---- -------cug AGAACC|G(- --GUG)CGGa 6601 CAAGGGGAUU C|-CGACUGU UU(AAUUA)A AACAGAGCAU CGCG|A--UG G|CCG(g--c 6661 gauc)gag-- ---------- --U-GUgGAC GCGAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugau- ----(gaga) -----uucac ----CGACGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAACU)AGUG AC|GCGCAUG AAUGGAUGAA CGAGAUUCCC ACUGU-CCCU AUCUACUAUC 6901 CA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCG -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUUUU G|AACUUGAC UCU-|AGCCC G---AUU-CU |GUGAAGGGA CUUGAGAGGC 7021 GUAGAAUAAG UGGGAGgc-- ---------- --(- -----)---- 7141 --------gc c-GCCGGUGA AA-UACCACU |ACUCUUAC- -CGUUC-CUU UACUAAC--- 7201 ------(--- --)------| --g GACAG-UUCC G-GGCG-GGG AG-UUUGACU G(GGG)CGGU 7561 A-C|GCCUGU (CAAACGGUA AC-)GCAG-G U|G|U|CCU- AAGGC-GAGC |UCAGG-GAG 7621 -G(ACG---- GAAA)CCUCC CGUGGA|GC( A|G--AAGG) GCGAAAG-CU C-GCUUGAUC 7681 -UUGAUUU(u c--aguac-- )GAAUACAGA CCGU(-GAAA )GCGUGG|CC --UCG|CGA- 7741 UCCUUUUG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -ACU-UUU(- -UGGG-U--U U---)----- ---------- 7861 -----UAA|G CAAGAG-GUG UC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCGGCCAAGC G(UCCAU)AG CGACGUCGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-CGAAG(CA -GA-)AUUCG CCAA-GCGU| UGGAU(UGUU C)ACCCACUa 8041 acAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGcuu<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->-uuGU CG-CC-GG-G ACAGCAACCC CGCU(CAGUA 8281 C(GAGA)GGA AC-)CGCGGG U|UCAGACAC UUGGcgcguG CGU|-CUGGC U(GAGC)AGC 8341 CAGCGGCGCG A-AGCUACC- AU-CUGA--G GGAUUAUGGC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCC-U CCUu---ggg cacG--GCGA U --|------( ---)------ 8701 -----gaaug |acucg(-ua aacga)cc-u gguua----c ggc|ucgggg ugucguaagu 8761 ag-cagagca g-----(uuc g--------- ---------- ---------- ---------- 8821 ----)----- u~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (11)-Gnath 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS (12)-Chond 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS Squ.acanth 9262 bp RNA RNA 11-JAN-1998 DEFINITION Squalus acanthias. ACCESSION No information KEYWORDS No information. SOURCE Squalus acanthias. ORGANISM Squalus acanthias. REFERENCE 1 (bases 1 to 6326) AUTHORS Jon Mallatt JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF061800 squal.con Length: 3650 November 10, 1997 14:48 Type: N Check: 8055 BASE COUNT 732 a 912 c 1175 g 663 t 5780 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ggcgccagua agcucugcc- )uacgaccuc agaucaga-c gUG----ACA 481 AC|CCGCUGA -A--UU|UA( AGCA)UA-UU ACUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-A)AG-G AU|UCCCCUA GU---AAC(U GCGA)GUG-A A-----GAGG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -----gcgcc g--aauccc- 781 cgcucg(ccu gg-)-cgggc gu-gggaaau guggcgua-u agaagaccuc uuucuccga- 841 ---cgacgc- ---------- ---------- ---------- ---------- ------uccg 901 gggcccaa-- --g-ucc-u( u-(cugauc- )g)agg-c-- ---------- ----uuaGCC 961 --|U(GUG)G |ACGG-(UGU GAGG)-CCGG UA|--gcggc ccccggcucg u----cgg-- 1021 ---------g aucga-gu-c uucuug---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GCU(----UG 1141 UGAA)UGCAG CCCAAA---- GCGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAACUC-- ---------- ---------- ---------- )CAU-CUAAG GCU----AAA 1381 UA-------- ---------- CUGGC-ACGA GACCGAUAGU CAAC-AAGUA CC(GUAA)G- 1441 G-GAAAGUUG -AAA-AGAAC UUU(ga-ag- )AGAG-AGUU C-AAGAGGGC G-UGAAAC-C 1501 GUUAA-GAG< gu--aaa-cg gguggggucc gcgcaguc-u gcccggagga uucaacucgg 1561 cgg----uga ggucggucgc guggggcuua gcgga-ucu- ccu-cugug- agaccg---c 1621 --gucccg-- cgugggcu-c gg-------- ccg------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 -----ccgcc gggcgcauuu ccuccguc-- gguggug-cg ccgcgac-cg ucucuggguc 1861 ggcugggaag gccggaggga agguggcucg ucgcuccggc ggcgaguguu auagcccccc 1921 ggcagcagcc u--------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ----cgccgu u--------- ---------- -ucccggggu 2101 cgagggaagu gaccgcugcc gcgccuuccc ccucgugagu gggggggacg ggcugcccgu 2161 gcucccggcg ugacugucaa ccugggcgga cuguccucag ugcgcccuga ccgcgucgcg 2221 ccgccgaguc gggagagcca cgaagcgggc ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ----gccagg g-guccgcgg 2521 cg-------- ---------- aug-ucggug a-cccacccg >-----acCC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACACGUGC GCGAGUCa-- aagggu---( ---gucccga 2641 a-)------- ---------- -----acccc ---------- --agGGCGCA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 -aggucggc- -(gcgg---- --)--gucga cc-----gag gugggau-cc cgccgc---- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( cccgc----- ----)----- ---------- --gcggcggg cgcaccaccg 3061 gcccgucuca ------cccg u------(-- uccg--)--- ---------- ---------- 3121 gcggg--gag gugg------ --------ag c]-------- ---------A CGAGCGUAC- 3181 -GUG-AUGGU ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- GG|C-AGGGC GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGU CCG-UA---G CG-GUCCUGA (CGUGCAAA) 3301 UCG-G-UCGU CCGACCUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGu -gcuc--|-- -|guccaca- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------c 3661 gcaguuUUAU -C|UGG--UA AA-GCGAAUG AUUAGAGGU- -----cUUGG GGCC--(gaa 3721 a-c)--GAUC U-CAA-|CCU AUUC-UCAAA CUUUA-AAUG |GGUAAGaag -cccgacuc( 3781 gcuggcuug) gagccgggc- ---------- ---------- ---------- ---------- 3841 ---------- ---gu-(g-- gaau)--gc- g|ag-ugccu -AGU-GGGCC -AcU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G CUGCGG(GA- UGAA)CCG-- AACGCUG--- GGUUAAG--G 3961 C|GCCC-gau gCC--GA-CG Cucau-ca-- --------ga ccccac---- -AAAAGGUGU 4021 U--GGUUGAU AUAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- GGAGCGUCG| G|-------- --GCCCAU-- --ACCCGGC| (- -----)-gcc gcgac-gAGU AGGA------ 4441 --GGG|-CCG CU-GC-GG-- --------U- -GAG-CAC-- G------GAA GCCC-----A 4501 G-GGC(GCGG -)GCCCGGG- UGG|A-GCC| G--CCGCAG- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- c(gagaa--- ---------- ---------- ---------- 4621 --)cuuuGAA |GGCCGAAGU G-GAG|AAGG GUU|CCAUGU GA-ACA(-GC AGU)UG|AAC 4681 AUGGGUCAGU |-CGG-UCCU AAGA------ -(----)--- 4921 ----UC-GAA AGGGA-GU-C GGG(UUCAGA UC-)CCCGA| -AU----ccg g-aguggcgg 4981 ag[ac----- ---------- ---------- gg-----g-- -c---gcc(- -ucac--)gg 5041 cgu------- ---------- ------ccag ugc-g(guaa -)cgcaa-a] cga-ucccgg 5101 agaa-----g ccg--gcggg ag-c-cccg- -GG-GAGA(G UUCUCUUU-) UCUuug-|ug 5161 a-agggca-- ---------- ggg|cg--CC CUGG--AAUG ----GG(UUC G--)CCCCG- 5221 AGAGA-GGG- gccc------ ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- --------g- ----ugcc-u ugg-----aa 5341 agcgucgcg( -guucc--)g gcggcguc-c ggugag---c -ucucg--cu ggcC-CUUGA 5401 AAA-uccggg -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------g gagauggu-- ---------- ---guaaauc --uc-gcg-- cc-gggCCGU 5581 A|CC--CAUA UCC(GCAGCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| GGCAU-||gu 5641 UG-G--AACA AU-GUAG-GU A-AGGGAAGU CGGCAA-GUC -AGAUCCGUA AC(UUCG)GG 5701 AUAAGGAUU| GGCUCUAAG- ---------- -(-----)---- -------CUU AGAACU|G(- --GUG)CGGa 6601 CCAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU CGCG|A--AG G|CCG(---c 6661 aggc)GGG-- ---------- --U-GUUGAC GCGAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(raaa) -----uucaa ----UGAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUGAA CGAGAUUCCC ACUGU-CCCU ACCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCU G---GCA-CU |GUGAAGAGA CAUGAGAGGU 7021 GUAGAAUAAG UGGGAGgc-- ---------- --<------- ---------- ---------- 7081 (--cucg--- )--------- ---------- ---------- ------->(- -----)---- 7141 --------gc c-GCCGGUGA AA-UACCACU |ACUCUUAU- -CGUUU-UUU CACUUAC--- 7201 ------(--- --)------| --g GACAG-UGGC A-GGUG-GGG AG-UUUGACU G(GGG)CGGU 7561 A-C|ACCUGU (CACACUGUA AC-)GCAG-G U|G|U|CCU- AAGGC-GAGC |UCAGG-GAG 7621 -G(ACA---- GAAA)CCUCC CGUGGA|GC( A|G--AAGG) GCAAAAG-CU C-GCUUGAUC 7681 -UUGAUUU(u c--aguau-- )GAAUACAGA CCGU(-GAAA )GCGGGG|CC --UCA|CGA- 7741 UCCUUCUG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -ACC-UUU(- -UGGG-U--U U---)----- ---------- 7861 -----UAA|G CAGGAG-GUG UC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCGGCCAAGC G(UUCAU)AG CGACGUCGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GA-)AUUCA CCAA-GCGU| UGGAU(UGUU C)ACCCACUa 8041 auAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGAug<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->--uGU UG-UU-GC-A AUAGUAAUCC UGCU(CAGUA 8281 C(GAGA)GGA AC-)CGCAGG U|UCAGACAU UUGGuguauG UGC|-UUGGC U(GAGG)AGC 8341 CAAUGGUGCG A-AGCUACC- AU-CUGU--G GGAUU~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Hyd.collie 9262 bp RNA RNA 11-JAN-1998 DEFINITION Hydrolagus colliei. ACCESSION No information KEYWORDS No information. SOURCE Hydrolagus colliei. ORGANISM Hydrolagus colliei. REFERENCE 1 (bases 1 to 6326) AUTHORS Jon Mallatt JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF061799 chim.con2 Length: 4463 November 7, 1997 08:29 Type: N Check: 7643 BASE COUNT 832 a 1117 c 1363 g 770 t 5180 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~cagaaGAUU UUAGCGGUGG AUC|AUUCGG 61 |UUCGUG-|G U|-CGAUGAA GAA|CGCA(- -GCUA--G)U |GC-GAGA-a UA-AUGU|[- 121 gaauugcagg acacauugau ---------- ---------- ---------- -------]-- 181 ---------- ---------- ---caucg|A CACUUU-GAA Cgc-(acuuu )-g-c|ggcc 241 ccg------g g(-------- ---------- ---------- ------uucu u--)cc---- 301 --cg-gggmu ---acgccug -u-cu-gagg gucgcu(--- ---uugc--- --aaucaauc 361 gccgcccccc ucgugucccg agcgcua aggagcccgg ccggcgcuac cgauuuu--- 421 ---------- ---------- ---ggca--- )cacgaccuc agaucaga-c gCG----GCA 481 AC|CCGCUGA -A--UU|UA( AGCA)UA-UU ACUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-C)AG-G AU|UCCCUCA GU---AAC(G GCGA)GUG-A A-----GAGG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -----gcgcc g--aauccc- 781 cgcucg(ccu ga-)-cgggc gu-gggaaau guggcgua-c agaagagcuc ucuguccgg- 841 ---cgacgc- ---------- ---------- ---------- ---------- ------uccg 901 gggcccaa-- --g-ucc-u( u-(cugauc- )g)agg-c-- ---------- ----uuaGCC 961 --|C(GUG)G |ACGG-(UGU GAGG)-CCGG UG|--gcggc ccccggcucg u----cgg-- 1021 ---------g acgga-cu-c uucacg---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GUU(----UG 1141 UGAA)UGCAG CCCAAA---- GUGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAACUC-- ---------- ---------- ---------- )CAU-CUAAG GCU----AAA 1381 UA-------- ---------- CUGGC-ACGA GACCGAUAGU CAAC-AAGUA CC(GUAA)G- 1441 G-GAAAGUUG -AAA-AGAAC UUU(ga-ag- )AGAG-AGUU C-AAGAGGGC G-UGAAAC-C 1501 GUUAA-GAG< gu--aaa-cg gguggggucc gcgcaguc-c gcccggagga uucaacccgg 1561 cgu----ccc gugucggccg cgccguuccc gcgga-ucuu cgg-gcccc- ccuccggggg 1621 gugucccgug gaccacggcc ggugcgccgu ccg------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 -----ccgcc gggcgcauuu ccuccgc--- gguggug-cg ccgcgac-cg gcucuggguc 1861 ggcugggaag gcccgcggga agguggcguu ccgcgcgugc ggagcguguu acagcccgcu 1921 cgggcagcag accucgccgu uucccggggc cguggaaagu gaucgcugcc gcgcccuccc 1981 ccgccgccgu cggcgucccu cugcucagcc guuaucccgc gagggggaag gcggcuuagg 2041 gcgucgcggc gggcccacgg ggggaacggg guccccgguu cccggugcga cugucgaccg 2101 guggcggacu guccucagug cgccccgacc gcguggugcc gccgcagccg gguccaccca 2161 cguuuucagg c--------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ----gccagg g-guccgcgg 2521 cg-------- ---------- aug-ucggug a-accacccg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACACGCGC GCGAGUCg-- gag------( gguggcacga 2641 aa)------- ---------- ------cucc ---------- --gcGGCGCA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 -aggccggc- -(gcgu---- --)--gccgg cc-----gag gugggau-cc cgccguc--- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( cgcgagc--- ----)----- ---------- -ggcggcggg cgcaccaccg 3061 gcccgucucg ------cccg -------(-u aucgu-)--- ---------- ---------- 3121 -cggg--gag gugg------ --------ag c]-------- ---------A GGAGCGUGC- 3181 -GUG-AUGGU ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- GG|C-AGGGC GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGU CCG-UA---G CG-GUCCUGA (CGUGCAAA) 3301 UCG-G-UCGU CCGACCUGGG UCUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGC -GCUC--|-- -|-agca--- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------c 3661 gcaguuUUAU -C|UGG--UA AA-GCGAAUG ACUAGAGGC- -----cUUGG GGCC--(gaa 3721 a-c)--GAUC U-CAA-|CCU AUUC-UCAAA CUUUA-AAUG |GGUAAGaug -cccggcuc( 3781 gcuggcuug) gagccgggc- ---------- ---------- ---------- ---------- 3841 ---------- ---gu-(g-- gaau)--gc- g|ag-cgccc -AGU-GGGCC -AcU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G CUGCGG(GA- UGAA)CCG-- AACGCCG--- GGUUAAG--G 3961 C|GCCC-gau gCC--GA-CG Cucau-ca-- --------ga ccccac---- -AAAAGGUGU 4021 U--GGUUGAU AUAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAACC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- GGAGCGUCG| G|-------- --GCCCAU-- --ACCCGGC| (- -----)-gcc gcgAC-GAGU AGGA------ 4441 --GGG|-CCG CC-GC-GG-- --------U- -GAG-CAC-- G------GAA GCCU-----A 4501 G-GGC(GCGG -)GCCCGGG- UGG|A-GCC| G--CCGCGG- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- c(gagaa--- ---------- ---------- ---------- 4621 --)cuuuGAA |GGCCGAAGU G-GAG|AAGG GUU|CCAUGU GA-ACA(-GC AGU)UG|AAC 4681 AUGGGUCAGU |-CGG-UCCU GAGA------ -(----)--- 4921 ----UC-GAA AGGGA-GU-C GGG(UUCAGA UC-)CCCGA| -AU----ccg g-aguggcgg 4981 ag[ac----- ---------- ---------- gg-----g-- -c---gcc(- -gcga--)gg 5041 cgu------- ---------- ------ccag ugc-g(guaa -)cgcaa-a] cga-ucccgg 5101 agaa-----g ccg--gcggg ag-c-cccgg -GG-AAGA(G UUCUCUUU-) UCUuug-|ug 5161 a-agggca-- ---------- ggg|ca--CC CUGG--AACG ----GG(UUC G--)CCCCG- 5221 AGAGA-GGG- gccc------ ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- --------g- ----agcc-u ugg-----aa 5341 agcgucgcg( -guucc--)g gcggcguc-c ggugag---c -ucucg--cu ggcC-CUUGA 5401 AAA-uccggg -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------g gagauggu-- ---------- ---guaaguc --uc-gcg-- cc-gggCCGU 5581 A|CC--CAUA UCC(GCAGCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| GGCAU-||gu 5641 UG-G--AACA AU-GUAG-GU A-AGGGAAGU CGGCAA-GUC -AGAUCCGUA AC(UUCG)GG 5701 ACAAGGAUU| GGCUCUAAG- ---------- -(-----)---- -------CUU AGAACU|G(- --GUG)CGGa 6601 CCAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU CGCG|A--AG G|CCG(---c 6661 aggu)GGG-- ---------- --U-GUUGAC GCGAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----UGAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUGAA CGAGAUUCCC ACUGU-CCCU ACCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCG -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCU G---GCA-CU |GUGAAGAGA CAUGAGAGGU 7021 GUAGAAUAAG UGGGAGgc-- ---------- --<------- ---------- ---------- 7081 (--uccg--- )--------- ---------- ---------- ------->(- -----)---- 7141 --------gc c-GCCGGUGA AA-UACCACU |ACUCUUAU- -CGUUU-CCU CACUUAC--- 7201 ------(--- --)------| --g GACAG-UGAC A-GGUG-GGG AG-UUUGACU G(GGG)CGGU 7561 A-C|ACCUGU (CACACCGUA AC-)GCAG-G U|G|U|CCU- AAGGC-GAGC |UCAGG-GAG 7621 -G(ACA---- GAAA)CCUCC CGUGGA|GC( A|G--AAGG) GCAAAAG-CU C-GCUUGAUC 7681 -UUGAUUU(c c--aguac-- )GAAUACAGA CCGC(-GAAA )GCGGGG|CC --UCA|CGA- 7741 UCCUUCUG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -GCU-UUU(- -UGGG-U--U U---)----- ---------- 7861 -----GAA|A CAGGAG-GUG UC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCGGCCAAGC G(UUCAU)AG CGACGUCGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GA-)AUUCA CCAA-GCGU| UGGAU(UGUU C)ACCCACUa 8041 auAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGAug<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->--uGU UG-UU-GC-A AUAGUAAUCC UGCU(CAGUA 8281 C(GAGA)GGA AC-)CGCAGG U|UCAGACAU UUGGuguauG UGC|-UUGGC U(GAGG)AGC 8341 CAAUGGUGCG A-AGCUACC- AU-CUGC--U GGCUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCC-C CCUA----ga uguG--AUGA U --|------( ---)------ 8701 -----aaacc |acuug(-ca uacga)cc-u gauuc----u ggg|ucaggg ugucguaagu 8761 ag-caga~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (12)-Bony 9262 bp RNA RNA ~?~???? DEFINITION Bony vertebrates. ACCESSION No information KEYWORDS No information. SOURCE Bony vertebrates. ORGANISM Bony vertebrates. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS (13)-Actin 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS Aci.brevir 9262 bp RNA RNA 11-JAN-191 DEFINITION Acipenser brevirostrum. ACCESSION No information KEYWORDS No information. SOURCE Acipenser brevirostrum. ORGANISM Acipenser brevirostrum. REFERENCE 1 (bases 1 to 6326) AUTHORS Zardoya,R. and Meyer,A. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U34340 LOCUS ABU34340 3432 bp DNA VRT 02-JAN-1996 DEFINITION Acipenser brevirostrum 28S ribosomal RNA gene, partial sequence. ACCESSION U34340 NID g1144500 KEYWORDS . SOURCE short-nose sturgeon. ORGANISM Acipenser brevirostrum Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser. REFERENCE 1 (bases 1 to 3432) AUTHORS Zardoya,R. and Meyer,A. TITLE The origin of tetrapods based on 28S ribosomal RNA sequences JOURNAL Unpublished (1996) REFERENCE 2 (bases 1 to 3432) AUTHORS Zardoya,R. and Meyer,A. TITLE Direct Submission JOURNAL Submitted (21-AUG-1995) Rafael Zardoya, Ecology and Evolution, State University of New York at Stony Brook, Life Sciences Bldg., Stony Brook, NY 11794-5245, USA COMMENT NCBI gi: 1144500 FEATURES Location/Qualifiers source 1..3432 /organism="Acipenser brevirostrum" rRNA <1..>3432 /product="28S rRNA" BASE COUNT 715 a 914 c 1140 g 662 t 1 others ORIGIN BASE COUNT 715 a 914 c 1140 g 662 t 5831 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~GGGAAA-- --AGAAACU( 541 AAC-C)AG-G AU|UCCCUCA GU---AAC(G GCGA)GUG-A A-----CAGG GAGG------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -----gcgcc g--aaucccc 781 gccug-(ucc cac)ug-ggc gc-gggaaau guggcguau- agaagaccg- aauc------ 841 ccuggcgu-- ---------- ---------- ---------- ---------- -cgaucgggg 901 ggc--caa-- --g-ucc-u( u-(cugauc- )g)agg-c-- ---------- -uc---auCC 961 --|C(ACG)G |ACGG-(UGU GAGG)-CCGG UA|--g-cgg ccuccgucgc gc-------- 1021 -------cgg ggucagg-uc uucuug---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GUU(----UG 1141 UGAA)UGCAG CCCAAA---- GCAGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAACUC-- ---------- ---------- ---------- )CAU-CUAAG GCU----AAA 1381 UA-------- ---------- CCGGC-AUGA GACCGAUAGC CAAC-AAGUA CC(GUAA)G- 1441 G-GAAAGUUG -AAA-AGAAC UUU(ga-ag- )AGAG-AGUU C-AAGAGGGC G-UGAAAC-C 1501 GUUAA-GAG< gu---aaacg gauggggucc gcgcaguc-c guccggagga uucaacucgg 1561 cgggu-uaaa ggucggccgu cccgggucug gcggaucccc uugcgggacc gcc-ucccgg 1621 ucg------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- -----ggcuc 1801 gucccccguc gggcgcauuu ccuccgc--- gguggug-cg ccgcgac-cg gcucugguuc 1861 ggcuugaaac ggccuggggu ggaagguggc ucgccgcuuc ggcgccgagu guuacauccc 1921 cccgccgcga aucgccgcuu ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- --uccggggc 2101 cgagggaaau gacugcugcc gugccc---- gcuacccucc gggggagcac gggacccccc 2161 gcucccggcg cgacugucga cugggccgga cuguccucag ugcggcucga ccgcgucgcg 2221 uugccgggcg ggguguguuc acgccagggc ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ----gccagg g-gucggcgg 2521 cg-------- ---------- aug-ucggcu a-cccauccg >------acC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACACGCGC GCGAGUCa-g cggg-----( cucuu-cuga 2641 aa)------- ---------- ------ccc- ---------- -cgcGGUGCA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 -gggccggc- -(gcgc---- --)--gccgg cu-----gag gugggau-cc cgccgc---- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ccccuu---- ----)----- ---------- --gcggcggg cgcaccaccg 3061 gcccgucuca ------cccg -------(-c agcgu-)--- ---------- ---------- 3121 -cggg--gag gugg------ --------ag c]-------- ---------A UGAGCGUGU- 3181 -GUG-AUAGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- GG|C-AGGGC GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGU CCG-UA---G CG-GUCCUGA (CGUGCAAA) 3301 UCG-G-UCGU CCGACCUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAUC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGC -ACUc--|-- -|----ugu- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ------cc-- 3661 gcaguUUUAU -C|UGG--UA AA-GCGAAUG AUUAGAGGU- -----cUUGG GGCC--(gaa 3721 a-c)--GAUC U-CAA-|CCU AUUC-UCAAA CUUUA-AAUG |GGUAAGaag -cccggcuc( 3781 gcuggcuug) gagccgggc- ---------- ---------- ---------- ---------- 3841 ---------- ---gu-(g-- gaau)--gu- g|AG-UGCCC -AGU-GGGCC -ACU-UUUG( 3901 G-UAAA)CAG AAC-UGGC-G CUGCGG(GA- UGAA)CCG-- AACGCUG--- GGUUAAG--G 3961 C|GCCC-gau g-CC-GA-CG CUCAU-ca-- --------ga ccccag---- -AAAAGGUGU 4021 U--GGUUGAU AUAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- GUAGCGUCG| G|-------- --GCCCAU-- --ACCCGGC| (- -----)-gcc gcgac-gAGU AGGA------ 4441 --GGG|-CCg CC-GC-GG-- --------u- -ggg-cac-- u------GAA GCCU-----A 4501 G-GGC(GAGG -)GCCCGGG- UGG|A-GCC| G--CCGCAG- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- C(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GACCGAAGU G-GAG|AAGG GUU|CCAUGU GA-ACA(-GC AGU)UG|AAC 4681 AUGGGUCAGU |-CGG-UCCU AAGA------ -(----)--- 4921 ----UC-GAA AGGGA-GU-C GGG(UUCAGA UC-)CCCGA| -AU----ccg ga-guggcgg 4981 ag[acggcc- -----gcc-- ---------- ---------- --------(- -gcga--)-- 5041 ---------- -------ggc gu----ccag ugc-g(guaa -)cgcaa-c] cga-ucccgg 5101 agaa-----g ccg--gcgag ag-c-cccg- -GA-GAGA(G UUCUCUUU-) UCUUUG-|UG 5161 A-AGGGCA-- ---------- ggc|c--acC CUGG--AAUG ----GG(UUC CC-)CCCGA- 5221 GA-GA-GGG- gcccg----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----cgcc-u uGG-----AA 5341 AGCGUCGCG( -guucc--)G GCGGCGUC-c ggugag---c -ucucg--cu gguC-CUUGA 5401 AAA-uccggg -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggagaagg-- ---------- --uguaaauc --uc-gcg-- cc-gggCCGU 5581 A|CC--CAUA UCC(GCAGCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| GGCAU-||gu 5641 UA-G--AACA AU-GUAG-GU A-AGGGAAGU CGGCAA-GUC -AGAUCCGUA AC(UUCG)GG 5701 AUAAGGAUU| GGCUCUAAG- ---------- -(-----)---- -------CUU AGAACU|G(- --GUG)CGGA 6601 CCAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAACCAU CGCG|A--AG G|CCC(---G 6661 UGGU)GGG-- ---------- --U-GUUGAC GCGAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----UGAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUGAA CGAGAUUCCC ACUGU-CCCU ACCUACUAUC 6901 UA|GCGAAAC C|aca-cCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCU G---GCA-CU |GUGAAGAGA CAUGAGAGGU 7021 GUAGAAUAAG UGGGAGGCCU Cg-------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -----)---- 7141 --------GC C-GCGUGUGA AA-UACCACU |ACUCUUAU- -CGUUU-UUU CACUUAC--- 7201 ------(--- --)------| --g GACAG-UGGC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGU 7561 A-C|ACCUGU (CAAACGGUA AC-)GCAG-G U|G|U|CCU- AAGGC-GAGC |UCAGG-GAG 7621 -G(ACA---- GAAA)CCUCC CGUGGA|GC( A|G--AAGG) GCAAAAG-CU C-GCUUGAUC 7681 -UUGAUUU(u c--aguau-- )GAAUACAGA CCGU(-GAAA )GCGGGG|CC --UCA|CGA- 7741 UCCUUCUG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -gcu-uuu(- -ugggnu--u u---)----- ---------- 7861 -----UAA|G CAGGAG-gug uC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCGGCCAAGC G(UUCAU)AG CGACGCCGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GA-)AUUCA CCAA-GCGU| UGGAU(UGUU C)ACCCACUA 8041 AUAGGGAACG UGACCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-u<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->-guGU UG-UU-GC-A AUAGUAAUCC UGCU(CAGUA 8281 C(GAGA)GGA AC-)CGCAGG U|UCAGACAU UUGGUGUAUG UGC|-UUGGC U(GAGG)AGC 8341 CAAUGGUGCG A-CGCUACC- AU-CUGU--G GGAUUAUGA~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Ang.rostra 9262 bp RNA RNA 11-JAN-191 DEFINITION Anguilla rostrata. ACCESSION No information KEYWORDS No information. SOURCE Anguilla rostrata. ORGANISM Anguilla rostrata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U34342 LOCUS ARU34342 3663 bp DNA VRT 02-JAN-1996 DEFINITION Anguilla rostrata 28S ribosomal RNA gene, partial sequence. ACCESSION U34342 NID g1144501 KEYWORDS . SOURCE American eel. ORGANISM Anguilla rostrata Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Anguilliformes; Anguilloidei; Anguillidae; Anguilla. REFERENCE 1 (bases 1 to 3663) AUTHORS Zardoya,R. and Meyer,A. TITLE The origin of tetrapods based on 28S ribosomal RNA sequences JOURNAL Unpublished (1996) REFERENCE 2 (bases 1 to 3663) AUTHORS Zardoya,R. and Meyer,A. TITLE Direct Submission JOURNAL Submitted (21-AUG-1995) Rafael Zardoya, Ecology and Evolution, State University of New York at Stony Brook, Life Sciences Bldg., Stony Brook, NY 11794-5245, USA COMMENT NCBI gi: 1144501 FEATURES Location/Qualifiers source 1..3663 /organism="Anguilla rostrata" rRNA <1..>3663 /product="28S rRNA" BASE COUNT 712 a 1054 c 1266 g 631 t ORIGIN BASE COUNT 712 a 1054 c 1266 g 631 t 5599 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~GGGAAA-- --AGAAACU( 541 AAC-C)AG-G AU|UCCCUCA GU---AAC(G GCGA)GUG-A A-----GAGG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -----gcgcc g--aaucccc 781 gcccg-(ucc gg-)-cgagc gu-gggaaau guggcguac- ggaagaccgc -u---uc--u 841 cccggcga-- ---------- ---------- ---------- ---------- -cgau-cggg 901 ggcc-uga-- --g-ucc-u( u-(cugauc- )g)agg-c-- ---------- -uc---agCC 961 --|C(GUG)G |ACGG-(UGU GAGU)-CCGG UA|--a-cgg cccccgucgc gc-------- 1021 -------cgg ggcgcgg-uc uucucg---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GUU(----UG 1141 GGAA)UGCAG CCCAAA---- GCGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAACUC-- ---------- ---------- ---------- )CAU-CUAAG GCU----AAA 1381 UA-------- ---------- CCGGC-ACGA GACCGAUAGU CGAC-AAGUA CC(GUAA)G- 1441 G-GAAAGUUG -AAA-AGAAC UUU(ga-ag- )AGAG-AGUU C-AAGAGGGC G-UGAAAC-C 1501 GUUGA-GAG< gu---aaacg gguggggucc gcgcaguc-c gcccggagga uucaacucgg 1561 cgggcccggu cggccgugcc ggggucgguc ggauccc-cu cgu-gggacc gccccccggc 1621 cg-aacccgu ccc------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 -----ccgcc gggcgcauuu ccuccgc--- ggcggug-cg ccgcgac-cg gcuccggguc 1861 ggcuuggaag ggcccgaggg gaagguggcu cgucgccucg gcgucgagcg uuacagcccc 1921 ucccgccacg accucgccgc uu-------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- -ccccggggc 2101 cgagggagac gaccgccgcc gcgccuuccc ggccgggccc cuccggcccc cgccccuccg 2161 gggguggggu gcccggcggg ggcccuccgc ucgggacggg gccccccgcc uccgacgcga 2221 cugucgaccg ggucggacug uccucagugc gcacccgacc gcgucgcgcc gccgggcggg 2281 gaccggccca cgauacacgg gc-------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ----gccagg g-gucugcgg 2521 cg-------- ---------- aug-ucggca a-cccacccg >------acC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACGCGCGC GCGAGUCa-g aggg-----( cucuc-ucga 2641 aa)------- ---------- ------ccc- ---------- -cguGGCACA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 -gggccggc- -(gcgc---- --)--gccgg cc-----gag gugggau-cc ccacucaccc 2941 cccucg---- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ccccucgggg c---)---cg gggggggacc c-gggcgggg cgcaccaccg 3061 gcccgucucg ------cccg -------(-c ucugu-)--- ---------- ---------- 3121 -cggg--gag gugg------ --------ag c]-------- ---------G UGAGCGCGU- 3181 -GCG-AUAGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- GG|C-AGGGC GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGU CCG-CA---G CG-GUCCUGA (CGUGCAAA) 3301 UCG-G-UCGU CCGACCUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC CC(CUCA)GG 3421 AUAGC-UGGC -GCUc--|-- -|-g-augu- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ------cuc- 3661 gcaguUUUAU -C|UGG--UA AA-GCGAAUG AUUAGAGGU- -----cUUGG GGCC--(gaa 3721 a-c)--GAUC U-CAA-|CCU AUUC-UCAAA CUUUA-AAUG |GGUAAGaag -cccggcuc( 3781 gcuggcuug) gagccgggc- ---------- ---------- ---------- ---------- 3841 ---------- ---gu-(g-- gaau)--gc- g|AGcCGCCU -AGU-GGGCC -ACG-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G CUGCGG(GA- UGAA)CCG-- AACGCCG--- GGUUAAG--G 3961 C|GCCC-gau g-CC-GA-CG CUCAU-ca-- --------ga ccccag---- -AAAAGGUGU 4021 U--GGUCGAU AUAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAACC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- GGAGCGUCG| G|-------- --GCCCAU-- --ACCCGGC| (- -----)-gcc gcgac-gAGU AGGA------ 4441 --GGG|-CCg CC-GC-GG-- --------u- -gag-cac-- g------GAA GCCU-----A 4501 G-GGC(GCGG -)GCCCGGG- UGG|A-GCC| G--CCGCGG- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- C(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GGCCGAAGU G-GAG|AAGG GUU|CCAUGU GA-ACA(-GC AGU)UG|AAC 4681 AUGGGUCAGU |-CGG-UCCU AAGA------ -(----)--- 4921 ----UC-GAA AGGGA-GU-C GGG(UUCAGA UC-)CCCGA| -AU----ccg ga-guggcgg 4981 ag[ac-ggc- -----gcc-- ---------- ---------- --------(- -gcga--)-- 5041 ---------- -------ggc gu----ccag ugc-g(guga -)cgcaa-c] cga-ucccgg 5101 agaa-----g ccg--gcggg ag-c-cccg- -GG-GAGA(G UUCUCUUU-) UCUUUG-|UG 5161 A-AGGGCA-- ---------- ggg|c--gcC CUGG--AAUG ----GG(UUC GC-)CCCGA- 5221 GA-GA-GGG- gcccg----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----agcc-u uGG-----AA 5341 AGCGUCGCG( -guucc--)G GCGGCGUC-c ggugag---c -ucucg--cu ggcC-CUUGA 5401 AAA-uccggg -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggagaugg-- ---------- --uguaaauc --uc-gcg-- cc-gggCCGU 5581 A|CC--CAUA UCC(GCGGCA )GG|UUU-CC AAGGU(GAAC A)GCCUCU-| GGCAU-||gu 5641 UA-G--AACA AG-GCAG-GU A-AGGGAAGU CGGCAA-GUC -AGAUCCGUA AC(UUCG)GG 5701 AUAAGGAUU| GGCUCUAAG- ---------- -(-----)---- -------CUU AGAACU|G(- --GUG)CGGA 6601 CCAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU CGCG|A--AG G|CCC(---G 6661 CGGC)GGG-- ---------- --U-GUUGAC GCGAUGUG-- AUUUCUGCCC AGU|CCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----UGAAGC G|UGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUGAA CGAGAUUCCC ACUGU-CCCU ACCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCU G---GCA-CU |GUGAAGAGA CAUGAGAGGU 7021 GUAGAAUAAG UGGGAGGCCU Cg-------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -----)---- 7141 --------GC C-GCCGGUGA AA-UACCACU |ACUCUUAU- -CGUUU-UUU CACUUAC--- 7201 ------(--- --)------| --g GACAG-UGGC A-GGUG-GGG AG-UUUGACU G(GGG)CGGU 7561 A-C|ACCUGU (CAAACGGUA AC-)GCAG-G U|G|U|CCU- AAGGC-GAGC |UCAGG-GAG 7621 -G(ACA---- GAAA)CCUCC CGUGGA|GC( A|G--AAGG) GCAAAAG-CU C-GCUUGAUC 7681 -UUGAUUU(u c--aguau-- )GAAUACAGA CCGU(-GAAA )GCGGGG|CC --UCA|CGA- 7741 UCCUUCUG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -acu-uuu(- -uggg-u--u u---)----- ---------- 7861 -----UAA|G CAGGAG-gug uC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCGGCCAAGC G(GUCAU)AG CGACGUCGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GA-)AUUCA CCAA-GCGU| UGGAU(UGUU C)ACCCACUA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-u<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->-guGU UG-UU-GC-A AUAGUAAUCC UGCU(CAGUA 8281 C(GAGA)GGA AC-)CGCAGG U|UCAGACAU UUGGUGUAUG UGC|-UUGGC U(GAGG)AGC 8341 CAAUGGUGCG A-AGCUACC- AU-CUGU--G GGAUUAUGA~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Cyp.carpio 9262 bp RNA RNA 20-FEB-1997 DEFINITION Cyprinus carpio.; . ACCESSION U87963 KEYWORDS . SOURCE Cyprinus carpio. ORGANISM Cyprinus carpio. REFERENCE 1 (bases 1 to 4763) AUTHORS Vera,M.I., Rios,H.M., de la Fuente,E. and Krauskopf,M. TITLE Characterization of the carp rRNA gene JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 4763) AUTHORS Vera,M.I., Rios,H.M., de la Fuente,E., Figueroa,J. and Krauskopf,M. TITLE Differential expression of carp (C. carpio) 5.8S rRNA during the acclimatization process JOURNAL Unpublished STANDARD No information REFERENCE 3 (bases 1 to 4763) AUTHORS Vera,M.I., Rios,H.M., de la Fuente,E. and Krauskopf,M. TITLE Direct Submission JOURNAL Submitted (30-JAN-1997) Instituto de Bioquimica, Universidad Austral de Chile, P.O. Box 567, Valdivia, Chile STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U87963 BASE COUNT 483 a 701 c 850 g 391 t 6837 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~CAACUC UUAGCGGUGG AUC|ACUCGG 61 |CUCGUGC|G -|UCGAUGAA GAA|CGCA(- -GCUA-GC)U |GC-GAGAAC UA-AUGU|[u 121 gaauugcagg acacauugau ---------- ---------- ---------- -------]-- 181 ---------- ---------- ---caucg|A CACUUC-GAA CGC-(acuuu )-g-c|ggcc 241 ccg------g g(-------- ---------- ---------- -----uucc- u--)cc---- 301 --cg-gggcc ---acgccug -u-cu-gagg gucg--(--- ---cu----/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --------cc ---gguuacg accucagguc aggcgagACA 481 AC|CCGCUGA -A--UU|UA( AGCA)UA-UU ACUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-A)AG-G AU|UCCCUCA GU---AGC(G GCGA)GCG-A A-----GAGG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -----gcgcc g--aaucccc 781 gccccg(ggc ca-)cggggc ga-gggaaau guggcguac- agaagaccgc -uc------u 841 cucggcgcg- ---------- ---------- ---------- ---------- ggcgu-gggg 901 ggcc-caa-- --g-ucc-u( u-(cugaug- )g)agg-c-- ---------- -uu---agCC 961 --|C(GUG)G |ACGG-(UGU GAGG)-CCGG UA|--g-cgg ccccugcccc gc-------- 1021 -------cgg ggcgcgguuc uucucg---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GCU(----UG 1141 GGAU)UGCAG CCCAAA---- GCGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAACUC-- ---------- ---------- ---------- )CAU-CUAAG GCU----AAA 1381 UA-------- ---------- CCGGC-ACGA GACCGAUAGU CGAC-AAGUA CC(GUGA)G- 1441 G-GAAAGUUG -AAA-AGAAC UUU(ga-ag- )AGAG-AGUU C-AAGAGGGC G-UGAAAC-C 1501 GUUAA-GAG< gu---aaacg gguggggucc gcacgguc-u gcccggagga uucaacccgg 1561 cggg----uc uggucggccc gguc--uggg cgcguggauc cccuuaggug gggaccgccg 1621 ucu--ggccg guggcucggc cg-------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 -----ccguc gggcgcacuu cuuccga--- ggcggug-cg ccgcgac-cg ccuccgguuu 1861 ggccaggaag ggucggg--- --gggcgaag guggcucgcg g-cccccggg ucgcgagcuu 1921 uacagagccc ccacgccccg acuuugccgc uuacccccgg ggccgugggc aguguccucg 1981 cgccuucucu ccucccgacg ggggagggac ggggcccccc gcccccggcg cgugcgucga 2041 ccggggcgga cuguccucag uccgucuccg accgcgccgc gccgccaggg uggggaucca 2101 ggcccucgua aagggu---- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ----gcucga g-guccgcgg 2521 cg-------- ---------- agg-ucggcc a-cccacccg >------AAC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACGCACGC GCGAGUCA-a agggu----( --guc-uccg 2641 a-)------- ---------- ---g-cccc- ---------- -caCGGCGCA AU(GAAG)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 -aggccggc- -(gcuc---- --)--gccgg cc-----cag gugggau-cc ccccgc---- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( cccg------ ----)----- ---------- --gcgggggg cgcaccaccg 3061 gcccgucucg ------cccg -------(-c accgc-)--- ---------- ---------- 3121 -cggg--cag gugg------ --------ag c]-------- ---------U AGAGCGCGC- 3181 -GCG-AUGGU ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- GG|C-AGGGC GAAGCCAGGG 3241 (GAAAA---- -----)CCCU GGU-GGAGGC CCG-CA---G CG-GUCCUGA (CGUGCAAA) 3301 UCG-G-UCGU CCGACCUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGC -GCUc--|-- -|-gcucgu- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ------acaa 3661 gcaguUUUAU -C|CGG--UA AA-GCGAAUG ACUAGAGGC- -----cUUGG GGCC--(gaa 3721 a-c)--gauc u-caa-|ccu auuc-UCAAA CUUUA-AAUG |GGUAAGaag -cccggcuc( 3781 gcuggcuug) gagccugggc ---------- ---------- ---------- ---------- 3841 ---------- ---gu-(g-- gaau)--gc- g|AGaCGCCU -AGU-GGGCC -ACU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G CUGCGG(GA- UGAA)CCG-- AACGCCG--- GGUUAAG--G 3961 C|GCCC-gau g-CC-GA-CG CUCAU-ca-- --------ga ccccag---- -AAAAGGUGU 4021 U--GGUUGAU AUAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- GGAGCGUCG| G|-------- --GCCCAU-- --ACCCGGC| (- -----)-gcc ucgac-gAGU AGGA------ 4441 --GGG|-CCg CC-GC-GG-- --------u- -g-g-cgc-- g------GAA GCCC-----A 4501 G-GGC(GCGG -)GCCCGGG- UGG|A-GCC| G--CCGCGG- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- C(gagag--- ---------- ---------- ---------- 4621 --)CUUUGAA |GGCCGAAGU G-GAG|AAGG GUU|CCAUGU GA-ACA(-GC AGU)UG|AAC 4681 AUGGGUCAGU |-CGG-UCCU AAGG------ -(----)--- 4921 ----UC-GAA AGGGA-GU-C UGG(UUCAGA UC-)CCAGA| -AC----ccg ga-ggugcgg 4981 ag[acgggc- -----gcc-- ---------- ---------- --------(- -gcga--)-- 5041 ---------- -------ggc gc----ccag ugc-g(guaa -)cgcaa-a] cga-acccgg 5101 agaa-----g cug--gcggg gg-c-cccg- -GG-AAGA(( UUCUCUUU-) UCUUUG-|UG 5161 A-AGGGCC-- ---------- ggg|c--acC UUGG--AAUG ----GG(UUC GU-)CCCGA- 5221 GA-GA-GGG- gccca----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----cgcc-c uGG-----AA 5341 AGCGCCGCG( -guucc--)G GCGGCGUC-c ggugag---c -ucucg--uc ggcC-CUUGA 5401 AAA-uccggg -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggagaagg-- ---------- --uguaaguc --uc-gcg-- cc-gggCCGU 5581 A|CC--CAUA UCC(GCAGCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| GGCGU-||gu 5641 UG-G--AACA AG-GCGGCGU A-AGGGAAGU CGGCAA-GUC -AGAUC~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~-~~~ ~|~~~(~--~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~-~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~-|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(- ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ -~~~~~-~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ -~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(- -~~~~~~~~~ ~~~-)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~-)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Onc.myki.1 9262 bp RNA RNA 11-JAN-191 DEFINITION Oncorhynchus mykiss. ACCESSION No information KEYWORDS No information. SOURCE Oncorhynchus mykiss. ORGANISM Oncorhynchus mykiss. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U34341 LOCUS OMU34341 3576 bp DNA VRT 02-JAN-1996 DEFINITION Oncorhynchus mykiss 28S ribosomal RNA gene, partial sequence. ACCESSION U34341 NID g1144505 KEYWORDS . SOURCE rainbow trout. ORGANISM Oncorhynchus mykiss Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Oncorhynchus. REFERENCE 1 (bases 1 to 3576) AUTHORS Zardoya,R. and Meyer,A. TITLE The origin of tetrapods based on 28S ribosomal RNA sequences JOURNAL Unpublished (1996) REFERENCE 2 (bases 1 to 3576) AUTHORS Zardoya,R. and Meyer,A. TITLE Direct Submission JOURNAL Submitted (21-AUG-1995) Rafael Zardoya, Ecology and Evolution, State University of New York at Stony Brook, Life Sciences Bldg., Stony Brook, NY 11794-5245, USA COMMENT NCBI gi: 1144505 FEATURES Location/Qualifiers source 1..3576 /organism="Oncorhynchus mykiss" rRNA <1..>3576 /product="28S rRNA" BASE COUNT 726 a 925 c 1208 g 717 t ORIGIN BASE COUNT 726 a 925 c 1208 g 717 t 5686 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~GGGAAA-- --AGAAACU( 541 AAC-C)AG-G AU|UCCCUCA GU---AGC(G GCGA)GCG-A A-----GAGG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -----acacc g--aaucccu 781 guccg-(ucu gg-)-cgggc ac-gggaaau gugguguau- agaagaccg- cu---uug-- 841 cccggugu-- ---------- ---------- ---------- ---------- -cgau-cggg 901 ggcc-uga-- --g-ucc-u( u-(cugauc- )g)agg-c-- ---------- -uc---agCC 961 --|C(GUG)G |ACGG-(UGU GAGG)-CCGG UA|--a-cgg cccccgucgc gc-------- 1021 -------cgg gguccgg-uc uuuuca---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GCU(----UG 1141 GGAA)UGCAG CCCAAA---- GCGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAACUC-- ---------- ---------- ---------- )CAU-CUAAG GCU----AAA 1381 UA-------- ---------- CCGUC-ACGA GACCGAUAGA CGAC-AAGUA CC(GUAA)G- 1441 A-GAAAGUUG -AAA-AGAAC UUC(ga-ag- )AGAG-AGUU C-AAGAGGGC G-UGAAAC-C 1501 GUUGA-GAG< gu---aaacg gguggggucc gcgcaguc-u gcccggagga uucaacucgg 1561 cggguc-agg gucggccguu ccgguguggu cggauccccu cgugggacug aucccugguc 1621 gggcu----- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------c 1801 ggcccccgcc gggcgcauuu ccucuguc-- gguggug-cg ccgcgac-cg gcucuggguc 1861 ggcuuggaag ggcuuggggc gaagguggcu accgguuucg gccgugagcu uuacagcgcc 1921 ccugcuccgu acucgccgcu ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- -uuccggggc 2101 cgaggacuua guacccgcuc gucauguccc cugcgggggg gcacggcccu ugcccccggc 2161 gcgacuguca accgggucgg acuguccuca gugcguaccc aaccgcguug cgucgccagg 2221 guagggaucg gcucacguaa acuggc---- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ----gccagg g-gucagcgg 2521 cg-------- ---------- aug-ucggca a-cccacccg >------acC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACGCAUGC GCAAGUCa-g agggu----( uuucu-ccga 2641 ac)------- ---------- --ac-accc- ---------- -cguGGCGCA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 -gggccggc- -(gcgu---- --)--gucgg cu-----gag gugggau-cc cgaccc---- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( uacg------ ----)----- ---------- --gggucggg cgcaccaccg 3061 gcccgucucg ------cccg -------(-c uuugu-)--- ---------- ---------- 3121 -cggg--gag gugg------ --------ag c]-------- ---------G UGAGCGCAU- 3181 -GCG-AUAGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- GG|C-AGGGC GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGU CCG-UA---G CG-GUCCUGA (CGUGCAAA) 3301 UCG-G-UCGU CCGACCUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGC -GCUc--|-- -|-g-aagu- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ------cuc- 3661 gcaguUUUAU -C|UGG--UA AA-GCGAAUG AUUAGAGGU- -----cUUGG GGCC--(gaa 3721 a-c)--GAUC U-CAA-|CCU AUUC-UCAAA CUUUA-AAUG |GGUAAGaag -cccggcuc( 3781 gcuggcuug) gagccgggc- ---------- ---------- ---------- ---------- 3841 ---------- ---gu-(g-- gaau)--gc- g|AGcCGCCU -AGU-GGGCC -ACU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G CUGCGG(GA- UGAA)CCG-- AACGCCG--- GGUUAAG--G 3961 C|GCCC-gau g-CC-GA-CG CUCAU-ca-- --------ga ccccag---- -AAAAGGUGU 4021 U--GGUCGAU AUAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- GGAGCGUCG| G|-------- --GCCCAU-- --ACCCGGC| (- -----)-gcc gcgac-gAGU AGGA------ 4441 --GGG|-CCg CC-GC-GG-- --------u- -gag-cac-- g------GAA GCCU-----A 4501 G-GGC(GCGG -)GCCCGGG- UGG|A-GCC| G--CCGCGG- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- C(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GGCCGAAGU G-GAG|AAGG GUU|CCAUGU GA-ACA(-GC AGU)UG|AAC 4681 AUGGGUCAGU |-CGG-UCCU AAGA------ -(----)--- 4921 ----UC-GAA AGGGA-GU-C GGG(UUCAGA UC-)CCCGA| -AU----ccg ga-guggcgg 4981 ag[augggc- -----gcc-- ---------- ---------- --------(- -gcga--)-- 5041 ---------- -------ggc gu----ccag ugc-g(guaa -)cgcga-c] cga-ucccgg 5101 agaa-----g cug--gcggg ag-c-cccg- -GG-GAGA(G UUCUCUUU-) UCUUUG-|UG 5161 A-AGGGCA-- ---------- ggg|c--gcC CUGG--AAUG ----GG(UUC GC-)CCCGA- 5221 GA-GA-GGG- gccca----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----agcc-c uGG-----AA 5341 AGCGUCGCG( -guucc--)G GCGGCGUC-c ggugag---c -ucucg--cu ggcC-CUUGA 5401 AAA-uccggg -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggagaggg-- ---------- --uguaaauc --uc-gcg-- cc-gggCCGU 5581 A|CC--CAUA UCC(GCAGCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| GGCAU-||gu 5641 UA-G--AACA AU-GUAU-GU A-AGGGAAGU CGGCAA-GUC -AGAUCCGUA AC(UUCG)GG 5701 AUAAGGAUU| GGCUCUAAG- ---------- -(-----)---- -------CUU AGAACU|G(- --GUG)CGGA 6601 CCAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU CGCG|A--AG G|CCC(---A 6661 AGGU)GGG-- ---------- --U-GAUGAC GCGAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----UGAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUGAA CGAGAUUCCC ACUGU-CCCU ACCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCG -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCU G---GCA-CU |GUGAAGAGA CAUGAGAGGU 7021 GUAGAAUAAG UGGGAGGCCC Cg-------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -----)---- 7141 --------GC C-GCCGGUGA AA-UACCACU |ACUCUUAU- -CGUUU-UUU CACUUAC--- 7201 ------(--- --)------| --g GACAG-UGGC A-GGUG-GGG AG-UUUGACU G(GGG)CGGU 7561 A-C|ACCUGU (CAAACGGUA AC-)GCAG-G U|G|U|CCU- AAGGC-GAGC |UCAGG-GAG 7621 -G(ACA---- GAAA)CCUCC CGUGGA|GC( A|G--AAGG) GCAAAAG-CU C-GCUUGAUC 7681 -UUGAUUU(u c--aguau-- )GAAUACAGA CCGU(-GAAA )GCGGGG|CC --UCA|CGA- 7741 UCCUUCUG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -acu-uuu(- -uggg-u--u u---)----- ---------- 7861 -----UAA|G CAGGAG-gug uC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCGGCCAAGC G(UUCAU)AG CGACGUCGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GA-)AUUCA CCAA-GCGU| UGGAU(UGUU C)ACCCACUA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-u<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->-guGU UG-UU-GC-A AUAGUAAUCC UGCU(CAGUA 8281 C(GAGA)GGA AC-)CGCAGG U|UCAGACAU UUGGUGUAUG UGC|-UUGGC U(GAGG)AGC 8341 CAAUGGUGCG A-AGCUACC- AU-CUGU--G GGAUUAUGA~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Onc.myki.2 9262 bp RNA RNA 28-APR-1998 DEFINITION Oncorhynchus mykiss.; . ACCESSION AF061801 KEYWORDS . SOURCE Oncorhynchus mykiss. ORGANISM Oncorhynchus mykiss. REFERENCE 1 (bases 1 to 260) AUTHORS Mallatt,J.M. and Sullivan,J. TITLE and hagfishes 28S and 18S rDNA sequences support the monophyly of lampreys JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 260) AUTHORS Mallatt,J.M. and Sullivan,J. TITLE Direct Submission JOURNAL Submitted (28-APR-1998) Zoology, Washington State University, Box 644236, Pullman, WA 99164-4236, USA STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF061801 BASE COUNT 49 a 72 c 77 g 60 t 9004 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~|~(~~~)~ |~~~~~(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~(~~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~]~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 3361 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~( 3781 ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~C U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCC-C CCUA----aa cGUA--AUGA U --|------( ---)------ 8701 -----aaauc |acucg(-ua racga)cc-u gauuc----u ggg|ucaggg uuucgugcgu 8761 ag-cagagca gc----(uca -cuc------ ---------- ---------- ---------- 8821 ----)----g cugca~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS S.namaycus 9262 bp RNA RNA 15-DEC-1994 DEFINITION Salvelinus namaycush.; . ACCESSION U17965 KEYWORDS . SOURCE Salvelinus namaycush. ORGANISM Salvelinus namaycush. REFERENCE 1 (bases 1 to 2265) AUTHORS Zhuo,L., Reed,K.M. and Phillips,R.B. TITLE sites in lake trout (Salvelinus namaycush) Hypervariability of ribosomal DNA at multiple chromosomal JOURNAL Genome (1995) In press STANDARD No information REFERENCE 2 (bases 1 to 2265) AUTHORS Reed,K. M. TITLE Direct Submission JOURNAL Submitted (01-DEC-1994) Reed K. M., University of Wisconsin-Milwaukee, Biological Sciences, Lapham Hall, Milwaukee, WI 53201, USA STANDARD full automatic COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U17965 NCBI gi: 602249 BASE COUNT 110 a 114 c 144 g 136 t 8758 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~--~~|~~( ~~~~)~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 901 ~~~~~~~~~~ --~-~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 --|~(~~~)~ |~~~~-(~~~ ~~~~)~~~~~ ~~|-~~~~~~ ~~~~~~~~~~ ~----~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~-~~~ 1141 ~~~~)~~~~~ ~~~~~~---~ ~~~~~~-~(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ~~~~~~~~-- ---------- ---------- ---------- )~~~~~~~~~ ~~~----~~~ 1381 ~~-------- --------~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~- 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------~ 2881 ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~(~~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~]~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~----- ----~)~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~-- 3361 --~)~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ --(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~-|~~~ ~~~~~~~~~~ ~~~~~-~~~~ |~~~~~~~~~ -~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ---------~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~-~~~~~ ~~~~~~~~~~ ~~~~-~~~~( 3901 ~~~~~~)~~~ ~~~-~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~-- ~~~~~~~--~ 3961 ~|~~~~~~~~ ~-~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---- ~~~~~~~~~~ 4021 ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~-~~~ ~~~--~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~-~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~-- -~~~~~~~~~ ~~-~~~~~~~ ~----~-~~~ ~~~~----~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ -~~~~~~~~- ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(-~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~---- ---------- --------~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~- -----~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~(~~~~ ~)~~~~~-~] ~~~~~~~~~~ 5101 ~~~~----~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~-~~~~~ ---~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ----~~~~~~ ~~~----~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~-~~~ ~|-~~(~--~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~-~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~-|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(- ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ -~~~~~-~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ -~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(- -~~~~~~~~~ ~~~-)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~GA-)AUUCA CCAA-GCGU| UGGAU(UGUU C)ACCCACUA 8041 AUAGGGAACG UGAGCUGGGU UUAGACCagu aauccugcuG UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-u<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->-GUGU UG-UU-GC-A A--------- ---U(CAGUA 8281 C(GAGA)GGA AC-)CGCAGG U|UCAGACAU UUGGUGUAUG UGC|-UUGGC U(GAGG)AGC 8341 CAAUGGUGCG A-ACGUACC- AU-CUGU--G GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCC-c CCUA--a--a cGUA--AUGA U --|------( ---)------ 8701 -----aaaug |acuug(-ua gacga)cc-u gauuc----u ggg|ucaggg uuucgugagu 8761 ag-cagagca gc----(uca -cuc------ ---------- ---------- ---------- 8821 ----)----g cugcgauc-u au-|ugaaag u|cag--cuc u--caa-ucc aa--uc--uu 8881 ugu~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (13)-lobe 9262 bp RNA RNA ~?~???? DEFINITION Lobe-finned fish and tetrapod clade. ACCESSION No information KEYWORDS No information. SOURCE Lobe-finned fish and tetrapod clade. ORGANISM Lobe-finned fish and tetrapod clade. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS (14)-Coela 9262 bp RNA RNA ~?~???? DEFINITION Coelacanthiformes. ACCESSION No information KEYWORDS No information. SOURCE Coelacanthiformes. ORGANISM Coelacanthiformes. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS Lat.chalum 9262 bp RNA RNA 11-JAN-191 DEFINITION Latimeria chalumnae. ACCESSION No information KEYWORDS No information. SOURCE Latimeria chalumnae. ORGANISM Latimeria chalumnae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U34336 LOCUS LCU34336 3410 bp DNA VRT 02-JAN-1996 DEFINITION Latimeria chalumnae 28S ribosomal RNA gene, partial sequence. ACCESSION U34336 NID g1144502 KEYWORDS . SOURCE coelacanth. ORGANISM Latimeria chalumnae Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Sarcopterygii; Coelacanthiformes; Latimeriidae; Latimeria. REFERENCE 1 (bases 1 to 3410) AUTHORS Zardoya,R. and Meyer,A. TITLE The origin of tetrapods based on 28S ribosomal RNA sequences JOURNAL Unpublished (1995) REFERENCE 2 (bases 1 to 3410) AUTHORS Zardoya,R. and Meyer,A. TITLE Direct Submission JOURNAL Submitted (21-AUG-1995) Rafael Zardoya, Ecology and Evolution, State University of New York at Stony Brook, Life Sciences Bldg., Stony Brook, NY 11794-5245, USA COMMENT NCBI gi: 1144502 FEATURES Location/Qualifiers source 1..3410 /organism="Latimeria chalumnae" /tissue_type="liver" rRNA <1..>3410 /product="28S rRNA" BASE COUNT 698 a 915 c 1166 g 631 t ORIGIN BASE COUNT 698 a 915 c 1166 g 631 t 5852 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~GGGAAA-- --AGAAACU( 541 AAC-C)AG-G AU|UCCCUCA GU---AAC(G GCGA)GUG-A A-----GAGG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -----gcgcc g--aaucccc 781 gcucg-(ucu gg-)-cgggc gc-gggaaau guggcguac- agaagaccc- --accu---c 841 cccggcgc-- ---------- ---------- ---------- ---------- -cgcu-cggg 901 ggcc-caa-- --g-ucc-u( u-(cugauu- )g)agg-c-- ---------- -uu---agCC 961 --|C(ACG)G |ACGG-(UGC GAGG)-CCGG UA|--g-cgg ccccgggcgc gc-------- 1021 -------cgg gaccggg-uc uucucg---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GUU(----UG 1141 GGAA)UGCAG CCCAAA---- GCGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAACUC-- ---------- ---------- ---------- )CAU-CUAAG GCU----AAA 1381 UA-------- ---------- CCGGC-ACGA GACCGAUAGU CGAC-AAGUA CC(GU-A)G- 1441 G-GAAAGUUG -AAA-AGAAC UUU(ga-ag- )AGAG-AGUU C-AAGAGGGC G-UGAAAC-C 1501 GUUGA-GAG< gu---aaacg gguggggucc gcgcaguc-c gcccggagga uucaacucgg 1561 cgugccgugc cggcc-gccc cgguguggcg gauccccucg cgggaacgcc cccgucggcg 1621 ugcgggc-cc ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 -----ccgcc gggugcauuu ccuccgc--- gguggug-cg ccgcgac-cg gcuccggguc 1861 gccugggaug gcugcgggcg gagguagcug gccucuccgg agaucagugu cugccccccu 1921 gccgcaccuc ggcguc---- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- -ucccggggc 2101 cguggaagau gaccgccgcc gcgcccuccu cuccccccuc gggggcugag acaggggccc 2161 ccgcugccgg cgcgacuguc gaauggggcg gacuguccuc agugcgcgcc ggacgcgucu 2221 cgccgcccgg ccgggaggcu cucuaucggg c--------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ----gccagg g-gucugcgg 2521 cg-------- ---------- aug-ucgguu u-cccacccg >------acC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACACGUGC GCGAGUCg-a aggg-----( --cag-agcg 2641 a-)------- ---------- ---a-accc- ---------- -cauGGCGCA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 -gggccggc- -(gcgg---- --)--gccgg cu-----gag gugggau-cc ccacg----- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ccccgu---- ----)----- ---------- --gcgggggg cgcaccacca 3061 gcccgucuca ------cccg -------(-c agcgu-)--- ---------- ---------- 3121 -cggg--gag gugg------ --------ag c]-------- ---------A UGAGCGUGC- 3181 -GUG-AUAGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- GG|C-AGGGC GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGU CCG-UA---G CG-GUCCUGA (CGUGCAAA) 3301 UCG-G-UCGU CCGACCUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCUc--|-- -|-g-agcg- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ------aac- 3661 gcaguUUUAU -C|UGG--UA AA-GCGAAUG ACUAGAGGU- -----cUUGG GGCC--(gaa 3721 a-c)--GAUC U-CAA-|CCU AUUC-UCAAA CUUUA-AAUG |GGUAAGaag -cccggcuc( 3781 gcuggcuug) gagccgggc- ---------- ---------- ---------- ---------- 3841 ---------- ---gu-(g-- gaau)--gc- g|AG-UGCCU -AGU-GGGCC -ACU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G CUGCGG(GA- UGAA)CCG-- AACGCCG--- GGUUGUG--G 3961 C|GCCC-gau g-CC-GA-CG CUCAU-ca-- --------ga ccccag---- -AAAAGGUGU 4021 U--GGUUGAU AUAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- GGAGCGUCG| G|-------- --GCCCAU-- --ACCCGGC| (- -----)-ccc gcgac-gAGU AGGA------ 4441 --GGG|-CCg CC-GC-GG-- --------u- -gag-cac-- u------GAA GCCU-----A 4501 G-GGC(GCGG -)GCCCGGG- UGG|A-GCU| G--CCGCGG- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- C(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GGCCGAAGU G-GAG|AAGG GUU|CCAUGU GA-ACA(-GC AGU)UG|AAC 4681 AUGGGUCAGU |-CGG-UCCU AAGA------ -(----)--- 4921 ----UC-GAA AGGGA-GU-U GGG(UUCAGA UC-)CCCGA| -AU----ccg ga-auggcgg 4981 ag[aggggc- -----gcc-- ---------- ---------- -------g(- -cugu--)u- 5041 ---------- -------ggc gu----ccag ugc-g(ccaa -)cgcaa-a] cga-ucccgg 5101 agaa-----g ccg--gcggg ag-c-cccg- -GG-GAGA(G UUCUCUUU-) UCUUUG-|UG 5161 A-AGGGCA-- ---------- ggg|c--gcC CUGG--AAUG ----GG(UUU GC-)ACCGA- 5221 GA-GA-GGG- gcccg----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----cgcc-c uGG-----AA 5341 AGCGUCGCG( -guucc--)G GCGGCGUC-c ggugag---c -ucucg--cu ggcC-CUUGA 5401 AAA-uccggg -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggagaagg-- ---------- --uguaaauc --uc-gcg-- cc-gggCCGU 5581 A|CC--CAUA UCC(GCAGCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| GGCAU-||gu 5641 UA-G--AACA AU-GUAG-GU A-AGGGAAGU CGGCAA-GCC -AGAUCCGUA AC(UUCG)GG 5701 AUAAGGAUU| GGCUCUAAG- ---------- -(-----)---- -------CUU AGAACU|G(- --GUG)CGGA 6601 CCAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU CGCG|A--AG G|CCC(---G 6661 CGGU)GGG-- ---------- --U-GUUGAC GCGAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----UGAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUGAA CGAGAUUCCC ACUGU-CCCU ACCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCU G---GCA-CU |GUGAAGAGA CAUGAGAGGU 7021 GUAGGAUAAG UGGGAGGCCU Cg-------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -----)---- 7141 --------GC C-GCCGGUGA AA-UACCACU |ACUCUUAU- -CGUUU-UUU CACUUAC--- 7201 ------(--- --)------| --g GACAG-UGGC A-GGUG-GGG AG-UUUGACU G(GGG)CGGU 7561 A-C|ACCUGU (CAAACCGUA AC-)GCAG-G U|G|U|CCU- AAGGC-GAGC |UCAGG-GAG 7621 -G(ACA---- GAAA)CCUCC CGUGGA|GC( A|G--AAGG) GCAAAAG-CU C-GCUUGAUC 7681 -UUGAUUU(u c--aguau-- )GAGUACAGA CCGU(-GAAA )GCGGGG|CC --UCA|CGA- 7741 UCCUUCUG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -acu-uuu(- -uggg-u--u u---)----- ---------- 7861 -----UAA|G CAGGAG-gug uC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCGGCCAAGC G(UUCAU)AG CGACGUCGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GA-)AUUCA CCAA-GCGU| UGGAU(UGUU C)ACCCACUA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-u<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->-guGU UG-UU-GC-A AUAGUAAUCC UGCU(CAGUA 8281 C(GAGA)GGA AC-)CGCAGG U|UCAGACAU UUGGUGUAUG UGC|-UUGGC U(GAGG)AGC 8341 CAAUGGUGCG A-AGCUACC- AU-CUGU--A GGAUUAUGA~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (14)-Dipno 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS Neo.forste 9262 bp RNA RNA 11-JAN-191 DEFINITION Neoceratodus forsteri. ACCESSION No information KEYWORDS No information. SOURCE Neoceratodus forsteri. ORGANISM Neoceratodus forsteri. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U34338 LOCUS NFU34338 3400 bp DNA VRT 02-JAN-1996 DEFINITION Neoceratodus forsteri 28S ribosomal RNA gene, partial sequence. ACCESSION U34338 NID g1144504 KEYWORDS . SOURCE Australian lungfish. ORGANISM Neoceratodus forsteri Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Sarcopterygii; Dipnoi; Lepidosireniformes; Ceratodidae; Neoceratodus. REFERENCE 1 (bases 1 to 3400) AUTHORS Zardoya,R. and Meyer,A. TITLE The origin of tetrapods based on 28S ribosomal RNA sequences JOURNAL Unpublished (1996) REFERENCE 2 (bases 1 to 3400) AUTHORS Zardoya,R. and Meyer,A. TITLE Direct Submission JOURNAL Submitted (21-AUG-1995) Rafael Zardoya, Ecology and Evolution, State University of New York at Stony Brook, Life Sciences Bldg., Stony Brook, NY 11794-5245, USA COMMENT NCBI gi: 1144504 FEATURES Location/Qualifiers source 1..3400 /organism="Neoceratodus forsteri" rRNA <1..>3400 /product="28S rRNA" BASE COUNT 765 a 830 c 1076 g 729 t ORIGIN BASE COUNT 765 a 830 c 1076 g 729 t 5862 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~GGGAAA-- --AGAAACU( 541 AAC-C)AG-G AU|UUCCUCA GU---AAC(G GCAA)GUG-A A-----GAGG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -----gugcc g--aauuccu 781 gucug-(ccu gg-)-caggu gu-gggucau guggcguac- agaag-ucug -ucu----cc 841 cccggcau-- ---------- ---------- ---------- ---------- -ugcc-cugg 901 ggcu-caa-- --g-acc-u( u-(guuauug )g)-gg-u-- ---------- -uc---agCC 961 --|U(GUG)G |ACGG-(UGU GAGG)-CCGG UA|--g-cag ccccuggcau gc-------- 1021 -------ugg gaucagg-uc uucucg---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-UGUUUU UUU(----UA 1141 UGAA)UGCAG CCCAGA---- GUGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAACUC-- ---------- ---------- ---------- )CAU-CUAAG GCU----AAA 1381 CA-------- ---------- CUGGC-ACAA GACUGAUAGC UGAC-AAGUA CC(GCAA)G- 1441 G-GAAAGUUG -AAA-AGAAC UUU(ga-ag- )AGAG-AGUU C-AAGAGGCU G-UGAAAC-U 1501 GUUCA-GAG< gu---aaaca gguggggucu gcacaguc-c accuggagca uucaacuugg 1561 ugg------u ccggucggcc acacgggaag guggaucccc caugggggcc auccccgugc 1621 gagcccagcc c--------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 -----ccauc ugauucauuu ccacugu--- gguggug-ca ccacgac-ug gcucuggguu 1861 gucuggcaag gccaguggga aggcgacucc ucucccugga gaggaguguu aggccucugg 1921 cagcagcugu caccaua--- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- -uccuggagc 2101 cgugaaagau gucugccacc gcacccuccu -----ccugc ccuccggggg ggaggcuggu 2161 gccccucugc uaccagugug acugucaacu ggacuggacu guccucagug caacccaacc 2221 acaucaugcu gccaggcugg gaggcucacu ucaggu---- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ----gcucag g-gucugugg 2521 ca-------- ---------- aug-ucaguu a-ccuaccca >------ucC CAU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGCC UAAUAGGUGU GCGAGUCc-a agggu----( --g-g-caug 2641 a-)------- ---------- ---a-accc- ---------- -cacGGCGCA AU(GAAA)A- 2701 -A[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 -gggcuggu- -(gugu---- --)--gcugg cu-----gag gugggau-cc ccucac---- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ccccag---- ----)----- ---------- --guggggag cacaucacug 3061 gcccgucuca ------ccca -------(-u uccuu-)--- ---------- ---------- 3121 -cggu--gag gugg------ --------ag c]-------- ---------A UGAGCAUAC- 3181 -CUG-GUGGG ACCCGAAAGA U-GGUG-AAC UAUG-UUUG- GG|C-AGAGC GAAGCCAGAG 3241 (GAAA----- -----)CUCU AGU-GGAGGU CCA-UA---G CG-GUCCUGA (CAUGCAAA) 3301 UCA-G-UCAU CCAACCUGGG UAUAGGG--G C--------- ---------- ---(AAAA-- 3361 --A)U---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC UGAAGUUUCC --(CUUA)GG 3421 AUAGC-UGGC -ACUu--|-- -|---g-gu- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ------a-u- 3661 gcaguUUUAU -C|UGG--UA AA-ACAAAUG AUUAGAGGU- -----cUUGG GGCC--(gaa 3721 a-u)--GAUC U-CAA-|CAU AUUU-UCAAA CUUGA-AAUG |GGUAAGaag -ccugacuc( 3781 gcuggcuug) gagccaggu- ---------- ---------- ---------- ---------- 3841 ---------- ---gu-(g-- gaau)--gc- g|AG-UGCCU -AGU-GGGCC -ACU-UUUG( 3901 G-UAAA)CAG AAC-UGGC-G CUGCGG(GA- UGAA)CCG-- AACGCCG--- GGUUAAG--G 3961 C|GCCC-gau g-CC-GA-CG CUCAU-ca-- --------ga ccccag---- -AAAAGGUGU 4021 U--GGUUGAU AUAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- GGAGCGUCG| G|-------- --GCCCAU-- --ACCCGGC| (- -----)-gcc gcgac-gAGU AGGA------ 4441 --GGG|-CCg CU-CC-GG-- --------u- -g-g-cac-- u------GAA GCCC-----A 4501 G-GGC(GAGG -)GCCCGGG- UGG|A-GCC| C--CCGCAG- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCACA- C(gagag--- ---------- ---------- ---------- 4621 --)CUUUGUA |GGCCGAAGU G-GAG|AAGG GUU|CCAUGU GA-ACA(-GC AGU)UG|AAC 4681 AUGGGUCAGU |-CGG-UCCU AAGA------ -(----)--- 4921 ----UC-GAA AGGGA-GU-C GGG(UUCAGA UC-)CCCGA| -AU----ccg ga-guggcgg 4981 ag[acgggc- -----gcc-- ---------- ---------- --------(- -ucgc--)-- 5041 ---------- -------ggc gu----ccag ugc-g(guaa -)cgcaa-a] cga-ucccgg 5101 agaa-----g ccg--gcggg ag-c-cccu- -GG-GAGA(G UUCUCUUU-) UCUUUG-|UA 5161 A-AGGGCA-- ---------- ggg|c--gcC CUGG--AAUG ----GG(UUC GC-)CCCGA- 5221 GA-GA-GGG- gcccg----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----agcc-c uGG-----AA 5341 AGCGUCGCG( -guucc--)G GCGGCGUC-a ggugag---c -ucucg--cu ggcC-CUUGA 5401 AAA-uccggg -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggagaugg-- ---------- --uguaaguc --uc-gcg-- cc-gggCCGU 5581 A|CC--CAUA UCC(GCAGCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| GGCAU-||gu 5641 UA-G--AACA AU-GUAG-GU A-AGGGAAGU CGGCAA-GCC -AGAUCCGUA AC(UUCG)GG 5701 AUAAGGAUU| GGCUCUAAG- ---------- -(-----)---- -------CUU AGAACU|C(- --AUG)CAGU 6601 CCAGAGGAAU C|-AGACUGU UU(AAUUA)A AACAAAGCAU CUUG|A--AG G|CUG(---G 6661 AGAU)UGC-- ---------- --U-GUUGAC ACGAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---cgugaa- ----(gaaa) -----uucaa ----UGAAGC G|UGGGUAAA 6781 U|GGU|GGGA GU(AAC-UAU G)AUUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUGAA CGAGAUUCCC ACUGU-CCCU ACCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCU G---GCA-CU |GUGAAGAGA CAUGAGAGGU 7021 GUAGAAUAAG UGGGAGGGCU Cg-------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -----)---- 7141 --------GC C-GCCGGUGA AA-UACCACU |ACUCUUAU- -CGUUU-UUU CACUUAC--- 7201 ------(--- --)------| --g GACAG-UGGC A-GGUG-GGG AG-UUUGACU G(GGG)CGGU 7561 A-C|ACCUGU (CAAACGGUA AC-)GCAG-G U|G|U|CCU- AAGGC-GAGC |UCAGG-GAG 7621 -G(ACA---- GAAA)CCUCC CGUGGA|GC( A|G--AAGG) GCAAAAG-CU C-GCUUGAUC 7681 -UUGAUUU(u c--aguau-- )GAAUACAGA CCGU(-GAAA )GCGGGG|CC --UCA|CGA- 7741 UCCUUCUG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -gcu-uuu(- -uggg-u--u u---)----- ---------- 7861 -----UAA|G CAGGAG-gug uC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCGGCCAAGC G(UUCAU)AG CGACGUCGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GA-)AUUCA CCAA-GCGU| UGGGU(UGUU C)ACCCACUA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-u<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->-guGU UG-UU-GC-A AUAGUAAUCC UGCU(CAGUA 8281 C(GAGA)GGA AC-)CGCAGG U|UCAGACAU UUGGUGUAUG UGC|-UUGGC U(GAGG)AGC 8341 CAAUGGUGCG A-AGCUACC- AU-CUGC--G GGAUUAUGA~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Lep.parado 9262 bp RNA RNA 11-JAN-191 DEFINITION Lepidosiren paradoxa. ACCESSION No information KEYWORDS No information. SOURCE Lepidosiren paradoxa. ORGANISM Lepidosiren paradoxa. REFERENCE 1 (bases 1 to 2265) AUTHORS Zardoya,R. and Meyer,A. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U34337 LOCUS LPU34337 3471 bp DNA VRT 02-JAN-1996 DEFINITION Lepidosiren paradoxa 28S ribosomal RNA gene, partial sequence. ACCESSION U34337 NID g1144503 KEYWORDS . SOURCE South American lungfish. ORGANISM Lepidosiren paradoxa Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Sarcopterygii; Dipnoi; Lepidosireniformes; Lepidosirenidae; Lepidosiren. REFERENCE 1 (bases 1 to 3471) AUTHORS Zardoya,R. and Meyer,A. TITLE The origin of tetrapods based on 28S ribosomal RNA sequences JOURNAL Unpublished (1995) REFERENCE 2 (bases 1 to 3471) AUTHORS Zardoya,R. and Meyer,A. TITLE Direct Submission JOURNAL Submitted (21-AUG-1995) Rafael Zardoya, Ecology and Evolution, State University of New York at Stony Brook, Life Sciences Bldg., Stony Brook, NY 11794-5245, USA COMMENT NCBI gi: 1144503 FEATURES Location/Qualifiers source 1..3471 /organism="Lepidosiren paradoxa" /tissue_type="muscle" rRNA <1..>3471 /product="28S rRNA" BASE COUNT 761 a 868 c 1136 g 706 t ORIGIN BASE COUNT 761 a 868 c 1136 g 706 t 5791 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~GGGAAA-- --ACAAACU( 541 AAC-C)AA-G AU|UCCCUCA GU---AAU(G GUGA)GUG-A A-----GUGG UAAG------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -----gcacc g--aaugccu 781 gccag-(ggu ga-)-caggc ac-aggaaau guuguguac- agaagucca- -ucu-----c 841 ccuggug--- ---------- ---------- ---------- ---------- cugcu-cugg 901 ggcc-caa-- --g-ucc-u( u-(gugaua- )g)agg-c-- ---------- -uc---agCA 961 --|C(ACA)G |ACAU-(UGU GAGG)-CCAU UA|--g-ugg cuuguggcau gc-------- 1021 -------cgg gaucugg-uc uucuug---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-UAGGUU GUU(----UG 1141 UGAA)UGCAG CCCAAA---- GUGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUACACUC-- ---------- ---------- ---------- )UAU-GGAAG GCU----AAA 1381 GA-------- ---------- CCAGC-ACAA GAACAAUAGU CGAC-AAGUA CU(GUAA)G- 1441 G-GAAAGUUG -AAA-AGUAC UUU(ga-ag- )AGAG-AGUU C-AAGAAGGC G-UGAAAC-C 1501 AUUCA-GAG< ga---aaaca ggugggguau gugcaguc-c accuagagga uucaaauuag 1561 uggacaugcu gucugccugu gaaggcggau cccacucccc cucuggggag guggggacug 1621 uccccggaug agcuggaug- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 -----ccauu gugcacauuu ccucugg--- gguggug-ca cuguaac-ca gcucuggguc 1861 aucugggaag gucgccagca agguggcucc cuucaccaga ggggaguguu aaguccaugg 1921 cagcagcucu uacugugucc caggccugug ggagacaacc a--------- ---------- 1981 ---------- ------cugc cacacccacc ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- -----uauga cccgccuuug uggcauguug 2221 ccaccccuga ggccaccauc ucccagaggg acuguugagu ggaacagacu guccucagug 2281 uggcccaacc augucucacu gucaggccag gaggcucuca gugguu---- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ----gccugg g-guccacau 2521 ca-------- ---------- aug-ucauug a-ccuacccg >------ucC CAU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAGGUGC GCGAGUCc-g agggu----( --ggg-cagg 2641 a-)------- ---------- ---g-accc- ---------- -cacGGCGCA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 -gggccggc- -(gcgc---- --)--gccgg cu-----gag gugggau-cc ccccg----- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( gcccgug--- ----)----- ---------- ---cgggggg cgcaccaccg 3061 gcccgucuca ------cccg -------(-u cccgu-)--- ---------- ---------- 3121 -cggg--gag gugg------ --------ag c]-------- ---------G UGAGCGUAC- 3181 -CUG-GUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- GG|C-AGGGC GAAGCCAGAG 3241 (GAGA----- -----)CUCU GGU-GGAGGU CCG-UA---G CG-GUCCUGA (CGUGCAAA) 3301 UCG-G-UCGU CCGACCUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGC -GCUc--|-- -|-g--gcg- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ------gac- 3661 gcaguUUUAU -C|UGG--UA AA-GCGAAUG AUUAGAGGU- -----cUUGG GGCC--(gaa 3721 a-c)--GAUC U-CAA-|CCU AUUC-UCAAA CUUUA-AAUG |GGUAAGaag -cccgacuc( 3781 gcuggcuug) gagccgggc- ---------- ---------- ---------- ---------- 3841 ---------- ---gu-(g-- gaau)--gc- g|AG-UGCCU -AGU-GGGCC -ACU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G CUGCGG(GA- UGAA)CCG-- AACGCCG--- GGUUAAG--G 3961 C|GCCC-gau g-CC-GA-CG CUCAU-ca-- --------ga ccccag---- -AAAAGGUGU 4021 U--GGUUGAU AUAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- GGAGCGUCG| G|-------- --GCCCAU-- --ACCCGGC| (- -----)-gcc gcgac-gAGU AGGA------ 4441 --GGG|-CCg CU-GC-GG-- --------u- -g-g-cac-- u------GAA GCCC-----A 4501 G-GGC(GAGG -)GCCCGGG- UGG|A-GCC| G--CCGCAG- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- C(gagag--- ---------- ---------- ---------- 4621 --)CUUUGAA |GGCCGAAGU G-GAG|AAGG GUU|CCAUGU GA-ACA(-GC AGA)UG|AAC 4681 AUGGGUCAGU |-CGG-UCCU GAGA------ -(----)--- 4921 ----UC-GAA AGGGA-GU-C GGA(UUCAGA UC-)CCCGA| -AU----ccg ga-guggcgg 4981 ag[acgggc- -----gcc-- ---------- ---------- --------(- -ucgc--)-- 5041 ---------- -------ggc gu----ccag ugc-g(guga -)cgcaa-a] cga-ucccgg 5101 agaa-----g ccg--gcggg gg-c-cccu- -GG-GAGA(G UUCUCUUU-) UCUUUG-|UA 5161 A-AGGGCA-- ---------- ggg|c--gcC CUGG--AAUG ----GG(UUC GC-)CCCGA- 5221 GA-GA-GGG- gcccg----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----ugcc-c uGG-----AA 5341 AGCGUCGCG( -guucc--)G GCGGCGUC-a ggugag---c -ucucg--cu ggcC-CUUGA 5401 AAA-uccggg -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggagaggg-- ---------- --uguaaguc --uc-gcg-- cc-gggCCGU 5581 A|CC--CAUA UCC(GCAGCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| GGCAU-||gu 5641 UA-G--AACA AU-GUAG-GU A-AGGGAAGU CGGCAA-GCC -AGAUCCGUA AC(UUCG)GG 5701 AUAAGGAUU| GGCUCUAAG- ---------- -(-----)---- -------CUU AGAACU|G(- --GUG)CGGA 6601 CCAGGGGAAU C|-CGACUGU UU(AAUUA)A AGCAAACCAU CGUG|A--AG G|CCC(---G 6661 GGAU)GGG-- ---------- --U-GUUGAC GUGAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCGA- ---agugaa- ----(gaaa) -----uccaa ----UGAUGC G|CGGGUAAA 6781 C|GGC|AGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUGAA CGAGAUUCCC ACUGU-CCCU ACCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCU G---GCA-CU |GUGAAGAGA CAUGAGAGGU 7021 GUAGAAUAAG UGGGAGGCCU Cg-------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -----)---- 7141 --------GC C-GCCGGUGA AA-UACCACU |ACUCUUAU- -CGUUU-UUU CACUUAC--- 7201 ------(--- --)------| --g GACAG-UGUC A-GGUG-GGG AG-UUUGACU G(GGG)CGGU 7561 A-C|ACCUGU (CAAAGAGUA AC-)GCAG-G U|G|U|CCU- AAGGC-GAGC |UCAGG-GAG 7621 -G(ACA---- GAAA)CCUCC CGUCGA|GC( A|G--AAGG) GCAAAAG-CU C-GCUUGAUC 7681 -UUGAUUU(u c--aguau-- )GAAUACAGA CCGU(-GAAA )GCGGGG|CC --UCA|CGA- 7741 UCCUUCUG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -ccu-uuu(- -uggg-u--u u---)----- ---------- 7861 -----UAA|G CAGGAG-gug uC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCGGCCAAGC G(UUCAU)AG CGACGUCGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GA-)AUUCA CCAA-GCGU| UGGAU(UGUU C)ACCCACUA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-u<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->-guGU UG-UU-GC-A AUAGUAAUCC UGCU(CAGUA 8281 C(GAGA)GGA AC-)CGCAGG U|UCAGACAU UUGGUGUAUG UGC|-UUGGC U(GAGG)AGC 8341 CAAUGGUGCG A-AGCUACC- AU-CUGU--G GGAUUAUGA~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Pro.aethio 9262 bp RNA RNA 11-JAN-191 DEFINITION Protopterus aethiopicus. ACCESSION No information KEYWORDS No information. SOURCE Protopterus aethiopicus. ORGANISM Protopterus aethiopicus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: U34339 LOCUS PAU34339 3355 bp DNA VRT 02-JAN-1996 DEFINITION Protopterus aethiopicus 28S ribosomal RNA gene, partial sequence. ACCESSION U34339 NID g1144506 KEYWORDS . SOURCE marbled lungfish. ORGANISM Protopterus aethiopicus Eukaryotae; mitochondrial eukaryotes; Metazoa; Chordata; Vertebrata; Sarcopterygii; Dipnoi; Lepidosireniformes; Protopteridae; Protopterus. REFERENCE 1 (bases 1 to 3355) AUTHORS Zardoya,R. and Meyer,A. TITLE The origin of tetrapods based on 28S ribosomal RNA sequences JOURNAL Unpublished (1996) REFERENCE 2 (bases 1 to 3355) AUTHORS Zardoya,R. and Meyer,A. TITLE Direct Submission JOURNAL Submitted (21-AUG-1995) Rafael Zardoya, Ecology and Evolution, State University of New York at Stony Brook, Life Sciences Bldg., Stony Brook, NY 11794-5245, USA COMMENT NCBI gi: 1144506 FEATURES Location/Qualifiers source 1..3355 /organism="Protopterus aethiopicus" rRNA <1..>3355 /product="28S rRNA" BASE COUNT 748 a 827 c 1091 g 689 t ORIGIN BASE COUNT 748 a 827 c 1091 g 689 t 5907 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~GGGAAA-- --AUAAACU( 541 AAC-C)AG-G AU|UCCCUCU GU---AAU(G GUGA)GUG-A A-----GAGG GAAU------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -----gcacc a--aaucccu 781 gccug-(ggc ga-)ugggug aaggggaaau guggcauau- ggaag-uuug -ucu-----c 841 cccggug--- ---------- ---------- ---------- ---------- ccgcc-cagg 901 ggcc-caa-- --g-acc-u( u-(gugauc- )g)agg-c-- ---------- -uc---agCC 961 --|C(GCG)G |AUGG-(UGC GAGG)-CCGG UG|--g-cgg ccccuggcaa gu-------- 1021 -------cag ggacagg-uc uccccg---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GUU(----UG 1141 UGAA)CGCAG CCCAAA---- GUGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAACUC-- ---------- ---------- ---------- )CAU-CUAAG GCU----AAA 1381 CA-------- ---------- CUGGC-AUGA GACCGAUAGC GGAC-AAAUA CC(AUAA)G- 1441 G-GAAAGUUG -AAA-AGAAC UUU(ga-ag- )AGAG-AGUU C-AAGAGGGC G-UGAAAG-U 1501 GUUCA-GAG< gu---aaaug gguggggucu gcgugguc-c auccggagga uucaacaugg 1561 cgggu-gcgc uggcc-ggac ggaugagggg guuccccu-- ccacauccgg gguugggggg 1621 acuguccccu agcaugcugg ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 --ccgccguc agguguauuu ccucugu--- ggucgug-ca ccgcaacuca gcuccggguc 1861 -agcugggaa ggccaugcgg aagguggcuc cccucaucgu aggagagugu uacagccugu 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- agc-auc-ag cccucgcc-g ugcccggggu 2101 caugggagau gaccacugcc gcacccacuc ---------- ---------c cgcccucucg 2161 gugggggcug ggggcuaccg gugggacugu ugacugggcu ggacugcccu caaugcggcc 2221 ugacugcauc cugcaccaug ccggugggcu c--------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ----accucg g-guucccgg 2521 g--------- ---------- gug-auggug a-cccacccg >------ucC CAU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAAUAGGUGC GUGAGUCu-g agggu----( --ggg-cagg 2641 a-)------- ---------- ---g-acuc- ---------- -cacGGCACA AU(AAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 -gagcuggu- -(gcau---- --)--gccgg cu-----gag gugggau-cc cccgc----- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ccugca---- ----)----- ---------- ---cgggggg ugcaccgcca 3061 gcccgucuca ------cccg -------(-u cccguc)--- ---------- ---------- 3121 -uggg---ag uugg------ --------ag c]-------- ---------A UGAGCGCAC- 3181 -CUG-GUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- GG|C-AGGGU GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGU CCG-UA---G CA-GUCCUGA (CAUGCAAA) 3301 UCA-G-UCAU CCGACCUGAG UAUUGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCAC CAAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGC -GCUc--|-- -|-g--gug- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ------gac- 3661 gcaguUAUAU -C|UGG--UA AA-GCGAAUG AUUAGAGGU- -----cUUGG GGC---(gaa 3721 a-c)--AAUC U-CAA-|CCU AUUC-UCAAA CUUUA-AAUG |GGUAAGaag -cccgacuc( 3781 gcuggcuug) gagccgggc- ---------- ---------- ---------- ---------- 3841 ---------- ---gu-(g-- gaau)--gc- g|AG-CACCC -AGU-GAGCC -ACU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G CUGCGG(GA- UGAA)CCG-- AACGCCG--- GGUUAAG--G 3961 C|GCCC-gau g-CC-GA-CG CUCAU-ca-- --------ga ccccag---- -AAAAGGUGU 4021 U--GGUUGAU AUAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- GGAGCGUCG| G|-------- --GCCCAU-- --ACCCGGC| (- -----)-gcc gcgcc-gAGU AGGA------ 4441 --GGG|-CCg CC-GC-GG-- --------u- -g-g-cac-- u------GAA GCCC-----A 4501 G-GGC(GAGG -)GCCCGGG- UGG|A-GCC| A--CCGCGG- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAACAAA -UAUUCACA- C(gagag--- ---------- ---------- ---------- 4621 --)CUAUGUA |GGCCGAAGU G-GAG|AAGG GUU|CCAUGU GA-ACA(-GC AGU)UG|AAC 4681 AUGGGUCAGU |-UGG-UCCU GAGA------ -(----)--- 4921 ----UU-GAA AGGGA-GU-C GGG(UGCAGA UC-)C----| -AG----ggu ag-cauugac 4981 ug[----uu- -----gcc-- ---------- ---------- --------(- -ucac--)-- 5041 ---------- -------auc au----ccag ugu-g(guga -)ugcaa-a] uga-ucccac 5101 agga-----g cug--gcugg gg-c-ccau- -GG-GAGA(G UUCUCUUU-) UCUUUG-|UA 5161 A-AGGACA-- ---------- ggg|c--gcC CUGG--AAUG ----GG(UUC GC-)CCCGA- 5221 GA-GA-GGG- gcccg----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----cgcc-c uGG-----AA 5341 AGCGUCGCG( -guucc--)G GCGGCGUC-a ggugag---c -ucucg--cc ggcC-CUUGA 5401 AAA-uccggg -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggagaggg-- ---------- --uguaaguc --uc-gcg-- cc-gggCCGU 5581 A|CC--CAUA UCC(GCAGCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| GGCAU-||gu 5641 UA-G--AACA AU-GUAG-GU A-AGGGAAGU CGACAA-GCC -AGAUCCGUA AC(UUUG)GG 5701 AUAAGGAUU| GGCUCUAAG- ---------- -(-----)---- -------CUU AGAACU|G(- --GUG)CAGA 6601 CUGGGGGAAU C|-CGACUGU UU(AAUUA)A AGCAUUGCG- ----|A--AG G|CC-(---G 6661 AGAC)AGG-- ---------- --U-GUUGAU AAGAUGUG-- AUUUCUGCCC AGU|GCACUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----UGACGU A|CGGGUAAA 6781 U|GGC|GGGA GU(AAU-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUGAA CGAGAUUCCC ACUGU-CCCU ACCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAA UGGGGAAAGA 6961 AGACCCUGUU G|AGUUUG-- ----|----- ---------- |GUGAAGAGA CAUGAGAGGU 7021 GUAGAAUAAG UGGGAGGCCU Ca-------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -----)---- 7141 --------GC U-GCUGGUGA AC-UACCACU |ACUCUUAU- -CGUUU-UUU CACUUAC--- 7201 ------(--- --)------| --g GACAG-UGUC A-GGUG-GGG AG-UUUGACU G(GGG)CGGU 7561 A-C|ACCUGU (CAAAGAGUA AC-)GCAG-G U|G|U|CCU- AAGGC-GAGC |UCAGG-GAG 7621 -G(ACA---- GAAA)CCUCC CGUGGA|GC( A|G--AAGG) GCAAAAG-CU C-GCUUGAUC 7681 -UUGAUUU(u c--aguau-- )GAAUACAGA CCGU(-GAAA )GCGGGG|CC --UCA|CGA- 7741 UCCUUCUG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -gcu-uuu(- -uggg-u--u u---)----- ---------- 7861 -----UAA|G CAGGAG-gug uC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCGGCCAAGC G(UUCAU)AG CGACGUCGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GA-)AUUCA CCAA-GCGU| UGGAU(UGUU C)ACCCACUA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-u<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->-guGU UG-UU-GC-G AUAGUAAUCC UGCU(CAGUA 8281 C(GAGA)GGA AC-)CGCAGG U|UCAGACAU UUGGUGUAUG UGC|-UUGGC U(GAGG)AGC 8341 CAAUGGUGCG A-AGCUACC- AU-CUGU--G GGAUUAUGA~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (14)-Tetra 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS (15)-Amnio 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS (16)-Mamma 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS (17)-Theri 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS (18)-Euthe 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS (19)-Prima 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS G.gorilla 9262 bp RNA RNA 11-JAN-191 DEFINITION Gorilla gorilla. ACCESSION No information KEYWORDS No information. SOURCE Gorilla gorilla. ORGANISM Gorilla gorilla. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: M30951 LOCUS GORRGITX 2467 bp ds-DNA PRI 15-SEP-1990 DEFINITION Gorilla 28S ribosomal RNA gene fragment. ACCESSION M30951 KEYWORDS 28S ribosomal RNA. SOURCE Gorilla DNA. ORGANISM Gorilla gorilla Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Primates; Haplorhini; Catarrhini; Pongidae. REFERENCE 1 (bases 1 to 2467) AUTHORS Gonzalez,I.L., Sylvester,J.E., Smith,T.F., Stambolian,D. and Schmickel,R.D. JOURNAL Unpublished (1990) STANDARD full staff_review REFERENCE 2 (bases 193 to 261; 375 to 944; 1041 to 1079; 1334 to 1354; 1737 to 1913; 2145 to 2159) AUTHORS Gonzalez,I.L., Sylvester,J.E., Smith,T.F., Stambolian,D. and Schmickel,R.D. TITLE Ribosomal RNA gene sequences and hominoid phylogeny JOURNAL Mol. Biol. Evol. 7, 203-219 (1990) STANDARD full staff_review COMMENT Draft entry and computer-readable sequence for [2],[1] kindly submitted by I.L.Gonzalez, 20-DEC-1989. FEATURES Location/Qualifiers rRNA <1..>2467 /note="28S ribosomal RNA" BASE COUNT 386 a 819 c 912 g 350 t ORIGIN Chromosomes 22 and 23. BASE COUNT 386 a 819 c 912 g 350 t 6795 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~|~(~~~)~ |~~~~~(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~GU CAAC-AAGUA CC(GUAA)G- 1441 G-GAAAGUUG -AAA-AGAAC UUU(ga-ag- )AGAG-AGUU C-AAGAGGGC G-UGAAAC-C 1501 GUUAA-GAG< gu---aaacg gguggggucc gcgcaguc-c gcccggagga uucaacccgg 1561 cggcggg--u ccggccgugu cggcgg-ccc ggcggaucuu ucccgccccc cguuccuccc 1621 gaccccucca cccgc----- ---------- --ccuccc-- --uucccccg ccgccccucc 1681 uccuccuccc -c----ggag ggggcg---- ggcuccggcg g--------- ---gugcggg 1741 gggugggcgg gcggggccgg gggugggguc ggcgggggac cgucccccg- accggcgacc 1801 ggccgccgcc gggcgcauuu ccaccgc--- ggcggug-cg ccgcgac-cg gcuccgggac 1861 ggcugggaag gcccggc--- ---ggggaag guggcucggg gggccccguc cguccguccg 1921 uccguccucc ucccccgucu ccgccccccg gccccgcguc cucccucggg aaggggcgcg 1981 cgggucggg- gcggcggcgg cggcgguggc ggcggcggcg gcgg----cg gcgggaccga 2041 aacccccccg aguguu---a cagcccc-cc ggccagccag ccaucgccga aucccggggc 2101 cgagggagcg aga--cccgu cgccgcgcuc uccccccucc cggcgcccac ccccgcgggg 2161 guccc--ccg cgaggggg-u ccc--ccgcg ggggcgcgcc ggcgucuccu cguggggggg 2221 -ccgggccac cccucccacg gcgcgaccgc ucuccc-acc ccu-cgcuuc ccc---gcac 2281 acucccccgg cgacggggu- ---gccgcgc gcgggucggg ggg-cggggc ggacuguccc 2341 cagugcgccc cgggcg-gg- ucgcgccguc gggccc-ggg gga------- ---------- 2401 ---------- ---------- gguucucccg gggccacgcg cgcguccccc gaagaggggg 2461 acggcggag- ---------- ---------- ---------c gagcgcacgg g-gucggcgg 2521 cg-------- ---------- aug-ucggcu a-cccacccg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACACGUGC GCGAGUCG-g gggcu----( ---cg-cacg 2641 aa)------- ---------- ---a-gccg- ---------- ccgUGGCGCA AU(GAAG)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 -aggccggcg -(cgcu---- --)-cgccgg cc-----gag gugggau-cc cgaggc---- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( cucuccgguc c---)----- ---------- --gccgaggg cgcaccaccg 3061 gcccgucucg ------cccg -------(-c cgcgc-)--- ---------- ---------- 3121 -cggg--gag gugg------ --------ag c]-------- ---------A CGAGCGCAC- 3181 -GUG-UUAGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- GG|C-AGGGC -AAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGU CCG-UA---G CG-GUCCUGA (CGUGCAAA) 3301 UCG-G-UCGU CCGACCUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGC -GCUc--|-- -|-ucgcaga ccccuccucc ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- cccc---cac 3661 gcaguUUUAU -C|CGG--UA AA-GCGAAUG AUUAGAGGU- -----cUUGG GGCC--(gaa 3721 a-c)--GAUC U-CAA-|CCU AUUC-UCAAA CUUUA-AAUG |GGUAAGaag -cccggcuc( 3781 gcuggcgug) gagccgg--- gugg------ ---------- ---------- ---------- 3841 ---------- ---------- ----aaugc- g|AG-UGCCU --GU-GGGCC -ACU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G CUGCGG(GA- UGAA)CCG-- AACGCCG--- GGUUAAG--G 3961 C|GCCC-gau g-CC-GA-CG CUCAU-ca-- --------ga ccccag---- -AAAAGGUGU 4021 U--GGUUGAU AUAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- GGAGCGUCG| G|-------- --GCCCAU-- --ACCCGGC| (- -----)-gcc gcgac-gAGU AGGA------ 4441 --GGG|-CCg CU-GC-GG-- --------u- -gaG-CCU-- u------GAA GCCU-----A 4501 G-GGC(GCGG -)GCCCGGG- UGG|A-GCC| G--CCGCAG- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- C(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GGCCGAAGU G-GAG|AAGG GUU|CCAUGU GA-ACA(-GC AGU)UG|AAC 4681 AUGGGUCAGU |-CGG-UCCU GAGA------ -(----)--- 4921 ----UC-GAA AGGGA-GU-C GGG(UUCAGA UC-)CCCGA| -AU----ccg ga-guggcgg 4981 ag[au----- ---------- ---------- gg-----g-- -c---gcc(- -gcga--)gg 5041 cgucc----- ---------- --------ag ugc-g(guaa -)cgcga-c] cga-ucccgg 5101 agaa-----g ccg--gcggg ag-c-cccg- -GG-GAGA(G UUCUCUUU-) UCUUUG-|UG 5161 A-agggca-- ---------- ggg|c--gcC CUGG--AAUG ----GG(UUC GC-)CCCGA- 5221 GA-GA-GGG- gcccg----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----ugcc-u uGG-----AA 5341 AGCGUCGCG( -guucc--)G GCGGCGUC-c ggugag---c -ucucg--cu ggcC-CUUGA 5401 AAA-uccggg -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggagaggg-- ---------- --uguaaauc --uc-gcg-- cc-gggCCGU 5581 A|CC--CAUA UCC(GCAGCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| GGCAU-||gu 5641 UG-G--AACA AU-GUAG-GU A-AGGGAAGU CGGCAA-GCC -GGAUCC~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~-~~~ ~|~~~(~--~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~-~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~-|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 (~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-->(- ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ -~~~~~-~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ -~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(- -~~~~~~~~~ ~~~-)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~-)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS H.sapien.1 9262 bp RNA RNA 11-JAN-191 DEFINITION Homo sapiens (Human). ACCESSION No information KEYWORDS No information. SOURCE Homo sapiens (Human). ORGANISM Homo sapiens (Human). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: J01866, M11167 LOCUS HUMRRB 159 bp ss-rRNA RNA 30-SEP-1988 DEFINITION Human 5.8S ribosomal RNA. ACCESSION J01866 - - h.sap28s COMMENTS - - LOCUS HUMRGM 5025 bp ds-DNA PRI 10-NOV-1986 DEFINITION Human 28S ribosomal RNA gene. ACCESSION M11167 BASE COUNT 831 a 1710 c 1855 g 788 t 4078 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~CGACUC UUAGCGGUGG AUC|ACUCGG 61 |CUCGUGC|G U|-CGAUGAA GAA|CGCA(g cGCUA-GC)U |GC-GAGAAU UA-augu|[- 121 gaauugcagg acacauugau ---------- ---------- ---------- -------]-- 181 ---------- ---------- ---caucg|A CACUUC-GAA Cgc-(acuu- )-g-c|ggcc 241 ccg------g g(-------- ---------- ---------- -----uucc- u--)cc---- 301 --cg-gggcu ---acgccug -u-cu-gagc gucg--(--- ---cuu---/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --------cg )--cgaccuc agaucaga-c gUG----GCG 481 AC|CCGCUGA -A--UU|UA( AGCA)UA-UU AGUCAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-C)AG-G AU|UCCCUCA GU---AAC(G GCGA)GUG-A A-----CAGG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -----gcgcc g--aaucccc 781 gccc--(cgc g--)--gggc gc-gggacau guggcguac- ggaagacccg --cuc---cc 841 cggcgccg-- ---------- ---------- ---------- ---------- cucgu-gggg 901 ggcc-caa-- --g-ucc-u( u-(cugauc- )g)agg-c-- ---------- -cc---agCC 961 --|C(GUG)G |ACGG-(UGU GAGG)-CCGG UA|--g-cgg cc---ggc-g c-----gc-- 1021 ---------- gcccgggu-c uucccg---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GCU(----UG 1141 GGAA)UGCAG CCCAAA---- GCGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAACUC-- ---------- ---------- ---------- )CAU-CUAAG GCU----AAA 1381 UA-------- ---------- CCGGC-ACGA GACCGAUAGU CAAC-AAGUA CC(GUAA)G- 1441 G-GAAAGUUG -AAA-AGAAC UUU(ga-ag- )AGAG-AGUU C-AAGAGGGC G-UGAAAC-C 1501 GUUAA-GAG< gu---aaacg gguggggucc gcgcaguc-c gcccggagga uucaacccgg 1561 cggcggg--u ccggccgugu cggcgg-ccc ggcggaucuu ucccgccccc cguuccuccc 1621 gaccccucca cccgc----- ---------- --ccuccc-- --uucccccg ccgccccucc 1681 uccuccuccc -c----ggag ggggcg---- ggcuccggcg g--------- ---gugcggg 1741 gg-ugggcgg gcggggccgg gggugggguc ggcgggggac cgucccccgg accggcgacc 1801 ggccgccgcc gggcgcauuu cca------- ggcggug-cg ccgcgac-cg gcuccgggac 1861 ggcugggaag gcccggc--- ---ggggaag guggcucggg gggccccguc cguccgucc- 1921 guccuccucc ucccccgucu ccgccccccg gccccgcguc cucccucggg a--gggcgcg 1981 cgggucggg- gcggcggcgg cggcggcggu ggcggcggcg gcgggggcgg cgggaccgaa 2041 accccccccg aguguu---a cagccccccc ggc-agc-ag cacucgccga aucccggggc 2101 cgagggagcg aga--cccgu cgccgcgcuc uccccccucc cggcgcccac ccccgcggga 2161 aucc---ccg cgaggggggu cuccccc--g gcgcggcgcc ggcgucuccu cguggggggg 2221 -ccgggccac cccucccacg gcgcgaccgc ucuccc-acc ccu-ccuccc c--gc-gccc 2281 ccgc-cccgg cgacgggggg ggugccgcgc gcgggucggg ggg-cggggc ggacuguccc 2341 cagugcgccc cgggcg-gg- ucgcgccguc gggccc-ggg gga------- ---------- 2401 ---------- ---------- gguucucucg gggccacgcg cgcguccccc gaagaggggg 2461 acggcggag- ---------- ---------- ---------c gagcgcacgg g-gucggcgg 2521 cg-------- ---------- acg-ucggcu a-cccacccg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACACGUGC GCGAGUCG-g gggcu----( ---cg-cacg 2641 aa)------- ---------- ---a-gccg- ---------- ccgUGGCGCA AU(GAAG)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 -aggccggcg -(cgcu---- --)-cgccgg cc-----gag gugggau-cc cgaggc---- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( cucuccaguc c---)----- ---------- --gccgaggg -gcaccaccg 3061 gcccgucucg ------cccg -------(-c cgcgc-)--- ---------- ---------- 3121 -cggg--gag gugg------ --------ag c]-------- ---------A CGAGCGCAC- 3181 -GUG-UUAGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- GG|C-AGGGC GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGU CCG-UA---G CG-GUCCUGA (CGUGCAAA) 3301 UCG-G-UCGU CCGACCUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGC -GCUc--|-- -|-ucgcaga cccgacgc-a ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- cccccgccac 3661 gcaguUUUAU -C|CGG--UA AA-GCGAAUG AUUAGAGGU- -----cUUGG GGCC--(gaa 3721 a-c)--GAUC U-CAA-|CCU AUUC-UCAAA CUUUA-AAUG |GGUAAGaag -cccggcuc( 3781 gcuggcgug) gagccggg-- gugg------ ---------- ---------- ---------- 3841 ---------- ---------- ----aaugc- g|AG-UGCCU -AGU-GGGCC -ACU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G CUGCGG(GA- UGAA)CCG-- AACGCCG--- GGUUAAG--G 3961 C|GCCC-gau g-CC-GA-CG CUCAU-ca-- --------ga ccccag---- -AAAAGGUGU 4021 U--GGUUGAU AUAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- GGAGCGUCG| G|-------- --GCCCAU-- --ACCCGGC| (- -----)-gcc gcgac-gAGU AGGA------ 4441 --GGG|-CCg CU-GC-GG-- --------u- -gaG-CCU-- u------GAA GCCU-----A 4501 G-GGC(GCGG -)GCCCGGG- UGG|AgGCC| G--CCGCAG- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- C(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GGCCGAAGU G-GAG|AAGG GUU|CCAUGU GA-ACA(-GC AGU)UG|AAC 4681 AUGGGUCAGU |-CGG-UCCU GAGA------ -(----)--- 4921 ----UC-GAA AGGGA-GU-C GGG(UUCAGA UC-)CCCGA| -AU----ccg ga-guggcgg 4981 ag[au----- ---------- ---------- gg-----g-- -c---gcc(- -gcga--)gg 5041 cgucc----- ---------- --------ag ugc-g(guaa -)cgcga-c] cga-ucccgg 5101 agaa-----g ccg--gcggg ag-c-cccg- -GG-GAGA(G UUCUCUUU-) UCUUUG-|UG 5161 A-agggca-- ---------- ggg|c--gcC CUGG--AAUG ----GG(UUC GC-)CCCGA- 5221 GA-GA-GGG- gcccg----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----ugcc-u uGG-----AA 5341 AGCGUCGCG( -guucc--)G GCGGCGUC-c ggugag---c -ucucg--cu ggcC-CUUGA 5401 AAA-uccggg -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggagaggg-- ---------- --uguaaauc --uc-gcg-- cc-gggCCGU 5581 A|CC--CAUA UCC(GCAGCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| GGCAU-||gu 5641 UG-G--AACA AU-GUAG-GU A-AGGGAAGU CGGCAA-GCC -GGAUCCGUA AC(UUCG)GG 5701 AUAAGGAUU| GGCUCUAAG- ---------- -(-----)---- -------CUU AGAACU|G(- --GUG)CGGA 6601 CCAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU CGCG|A--AG G|CCC(---g 6661 cggc)GGG-- ---------- --U-GUUGAC GCGAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----UGAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUGAA CGAGAUUCCC ACUGU-CCCU ACCUACUAUC 6901 CA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCG -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCU G---GCA-CG |GUGAAGAGA CAUGAGAGGU 7021 GUAGAAUAAG UGGGAGGCCc c--------- --<------- ---cggcgcc c-ccccggug 7081 (---uccc-- )cgcgagggg cccggggcgg gguccgcggc ccugc-->(- -----)---- 7141 ------gGGC C-GCCGGUGA AA-UACCACU |ACUCUGAU- -CGUUU-UUU CACUGAc--- 7201 ------(--- --)------| --g GACAG-UGCC A-GGUG-GGG AG-UUUGACU G(GGG)CGGU 7561 A-C|ACCUGU (CAAACGGUA AC-)GCAG-G U|G|U|CCU- AAGGC-GAGC |UCAGG-GAG 7621 -G(ACA---- GAAA)CCUCC CGUGGA|GC( A|G--AAGG) GCAAAAG-CU C-GCUUGAUC 7681 -UUGAUUU(u c--aguac-- )GAAUACAGA CCGU(-GAAA )GCGGGG|CC --UCA|CGA- 7741 UCCUUCUG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -acC-UUU(- -UGGG-U--U U---)----- ---------- 7861 -----UAA|G CAGGAG-gug uc|aGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCGGCCAAGC G(UUCAU)AG CGACGUCGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GA-)AUUCG CCAA-GCGU| UGGAU(UGUU C)ACCCACUA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-u<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->-guGU UG-UU-GC-C AUGGUAAUCC UGCU(CAGUA 8281 C(GAGA)GGA AC-)CGCAGG U|UCAGACAU UUGGUGUAUG UGC|-UUGGC U(GAGG)AGC 8341 CAAUGGGGCG a-AGCUACC- AU-CUGu--G GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCC-g CCCA-----g -GCG-aACGA U --|------( ---)------ 8701 -----aaacc |auucg(-ua gacga)cc-u gcuuc----u ggg|ucgggg uuucguacgu 8761 ag-cagagca gc----(ucc -cuc------ ---------- ---------- ---------- 8821 ----)----g cugcgauc-u au-|ugaaag u|cag--ccc u--cga-cac aa--ggg-uu 8881 uguc~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS H.sapien.2 9262 bp RNA RNA 11-JAN-191 DEFINITION Homo sapiens (Human). ACCESSION No information KEYWORDS No information. SOURCE Homo sapiens (Human). ORGANISM Homo sapiens (Human). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: from J01866, M11167 GC in 5.8 taken out due to U13369 We could grab that accession and redo...maybe later LOCUS HUMRRB 159 bp ss-rRNA RNA 30-SEP-1988 DEFINITION Human 5.8S ribosomal RNA. ACCESSION J01866 - - h.sap28s COMMENTS - - LOCUS HUMRGM 5025 bp ds-DNA PRI 10-NOV-1986 DEFINITION Human 28S ribosomal RNA gene. ACCESSION M11167 BASE COUNT 831 a 1709 c 1854 g 788 t 4080 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~CGACUC UUAGCGGUGG AUC|ACUCGG 61 |CUCGUGC|G U|-CGAUGAA GAA|CGCA(- -GCUA-GC)U |GC-GAGAAU UA-augu|[- 121 gaauugcagg acacauugau ---------- ---------- ---------- -------]-- 181 ---------- ---------- ---caucg|A CACUUC-GAA Cgc-(acuu- )-g-c|ggcc 241 ccg------g g(-------- ---------- ---------- -----uucc- u--)cc---- 301 --cg-gggcu ---acgccug -u-cu-gagc gucg--(--- ---cuu---/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --------cg )--cgaccuc agaucaga-c gUG----GCG 481 AC|CCGCUGA -A--UU|UA( AGCA)UA-UU AGUCAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-C)AG-G AU|UCCCUCA GU---AAC(G GCGA)GUG-A A-----CAGG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -----gcgcc g--aaucccc 781 gccc--(cgc g--)--gggc gc-gggacau guggcguac- ggaagacccg --cuc---cc 841 cggcgccg-- ---------- ---------- ---------- ---------- cucgu-gggg 901 ggcc-caa-- --g-ucc-u( u-(cugauc- )g)agg-c-- ---------- -cc---agCC 961 --|C(GUG)G |ACGG-(UGU GAGG)-CCGG UA|--g-cgg cc---ggc-g c-----gc-- 1021 ---------- gcccgggu-c uucccg---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GCU(----UG 1141 GGAA)UGCAG CCCAAA---- GCGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAACUC-- ---------- ---------- ---------- )CAU-CUAAG GCU----AAA 1381 UA-------- ---------- CCGGC-ACGA GACCGAUAGU CAAC-AAGUA CC(GUAA)G- 1441 G-GAAAGUUG -AAA-AGAAC UUU(ga-ag- )AGAG-AGUU C-AAGAGGGC G-UGAAAC-C 1501 GUUAA-GAG< gu---aaacg gguggggucc gcgcaguc-c gcccggagga uucaacccgg 1561 cggcggg--u ccggccgugu cggcgg-ccc ggcggaucuu ucccgccccc cguuccuccc 1621 gaccccucca cccgc----- ---------- --ccuccc-- --uucccccg ccgccccucc 1681 uccuccuccc -c----ggag ggggcg---- ggcuccggcg g--------- ---gugcggg 1741 gg-ugggcgg gcggggccgg gggugggguc ggcgggggac cgucccccgg accggcgacc 1801 ggccgccgcc gggcgcauuu cca------- ggcggug-cg ccgcgac-cg gcuccgggac 1861 ggcugggaag gcccggc--- ---ggggaag guggcucggg gggccccguc cguccgucc- 1921 guccuccucc ucccccgucu ccgccccccg gccccgcguc cucccucggg a--gggcgcg 1981 cgggucggg- gcggcggcgg cggcggcggu ggcggcggcg gcgggggcgg cgggaccgaa 2041 accccccccg aguguu---a cagccccccc ggc-agc-ag cacucgccga aucccggggc 2101 cgagggagcg aga--cccgu cgccgcgcuc uccccccucc cggcgcccac ccccgcggga 2161 aucc---ccg cgaggggggu cuccccc--g gcgcggcgcc ggcgucuccu cguggggggg 2221 -ccgggccac cccucccacg gcgcgaccgc ucuccc-acc ccu-ccuccc c--gc-gccc 2281 ccgc-cccgg cgacgggggg ggugccgcgc gcgggucggg ggg-cggggc ggacuguccc 2341 cagugcgccc cgggcg-gg- ucgcgccguc gggccc-ggg gga------- ---------- 2401 ---------- ---------- gguucucucg gggccacgcg cgcguccccc gaagaggggg 2461 acggcggag- ---------- ---------- ---------c gagcgcacgg g-gucggcgg 2521 cg-------- ---------- acg-ucggcu a-cccacccg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACACGUGC GCGAGUCG-g gggcu----( ---cg-cacg 2641 aa)------- ---------- ---a-gccg- ---------- ccgUGGCGCA AU(GAAG)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 -aggccggcg -(cgcu---- --)-cgccgg cc-----gag gugggau-cc cgaggc---- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( cucuccaguc c---)----- ---------- --gccgaggg -gcaccaccg 3061 gcccgucucg ------cccg -------(-c cgcgc-)--- ---------- ---------- 3121 -cggg--gag gugg------ --------ag c]-------- ---------A CGAGCGCAC- 3181 -GUG-UUAGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- GG|C-AGGGC GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGU CCG-UA---G CG-GUCCUGA (CGUGCAAA) 3301 UCG-G-UCGU CCGACCUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGC -GCUc--|-- -|-ucgcaga cccgacgc-a ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- cccccgccac 3661 gcaguUUUAU -C|CGG--UA AA-GCGAAUG AUUAGAGGU- -----cUUGG GGCC--(gaa 3721 a-c)--GAUC U-CAA-|CCU AUUC-UCAAA CUUUA-AAUG |GGUAAGaag -cccggcuc( 3781 gcuggcgug) gagccggg-- gugg------ ---------- ---------- ---------- 3841 ---------- ---------- ----aaugc- g|AG-UGCCU -AGU-GGGCC -ACU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G CUGCGG(GA- UGAA)CCG-- AACGCCG--- GGUUAAG--G 3961 C|GCCC-gau g-CC-GA-CG CUCAU-ca-- --------ga ccccag---- -AAAAGGUGU 4021 U--GGUUGAU AUAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- GGAGCGUCG| G|-------- --GCCCAU-- --ACCCGGC| (- -----)-gcc gcgac-gAGU AGGA------ 4441 --GGG|-CCg CU-GC-GG-- --------u- -gaG-CCU-- u------GAA GCCU-----A 4501 G-GGC(GCGG -)GCCCGGG- UGG|AgGCC| G--CCGCAG- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- C(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GGCCGAAGU G-GAG|AAGG GUU|CCAUGU GA-ACA(-GC AGU)UG|AAC 4681 AUGGGUCAGU |-CGG-UCCU GAGA------ -(----)--- 4921 ----UC-GAA AGGGA-GU-C GGG(UUCAGA UC-)CCCGA| -AU----ccg ga-guggcgg 4981 ag[au----- ---------- ---------- gg-----g-- -c---gcc(- -gcga--)gg 5041 cgucc----- ---------- --------ag ugc-g(guaa -)cgcga-c] cga-ucccgg 5101 agaa-----g ccg--gcggg ag-c-cccg- -GG-GAGA(G UUCUCUUU-) UCUUUG-|UG 5161 A-agggca-- ---------- ggg|c--gcC CUGG--AAUG ----GG(UUC GC-)CCCGA- 5221 GA-GA-GGG- gcccg----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----ugcc-u uGG-----AA 5341 AGCGUCGCG( -guucc--)G GCGGCGUC-c ggugag---c -ucucg--cu ggcC-CUUGA 5401 AAA-uccggg -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggagaggg-- ---------- --uguaaauc --uc-gcg-- cc-gggCCGU 5581 A|CC--CAUA UCC(GCAGCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| GGCAU-||gu 5641 UG-G--AACA AU-GUAG-GU A-AGGGAAGU CGGCAA-GCC -GGAUCCGUA AC(UUCG)GG 5701 AUAAGGAUU| GGCUCUAAG- ---------- -(-----)---- -------CUU AGAACU|G(- --GUG)CGGA 6601 CCAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU CGCG|A--AG G|CCC(---g 6661 cggc)GGG-- ---------- --U-GUUGAC GCGAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----UGAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUGAA CGAGAUUCCC ACUGU-CCCU ACCUACUAUC 6901 CA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCG -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCU G---GCA-CG |GUGAAGAGA CAUGAGAGGU 7021 GUAGAAUAAG UGGGAGGCCc c--------- --<------- ---cggcgcc c-ccccggug 7081 (---uccc-- )cgcgagggg cccggggcgg gguccgcggc ccugc-->(- -----)---- 7141 ------gGGC C-GCCGGUGA AA-UACCACU |ACUCUGAU- -CGUUU-UUU CACUGAc--- 7201 ------(--- --)------| --g GACAG-UGCC A-GGUG-GGG AG-UUUGACU G(GGG)CGGU 7561 A-C|ACCUGU (CAAACGGUA AC-)GCAG-G U|G|U|CCU- AAGGC-GAGC |UCAGG-GAG 7621 -G(ACA---- GAAA)CCUCC CGUGGA|GC( A|G--AAGG) GCAAAAG-CU C-GCUUGAUC 7681 -UUGAUUU(u c--aguac-- )GAAUACAGA CCGU(-GAAA )GCGGGG|CC --UCA|CGA- 7741 UCCUUCUG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -acC-UUU(- -UGGG-U--U U---)----- ---------- 7861 -----UAA|G CAGGAG-gug uc|aGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCGGCCAAGC G(UUCAU)AG CGACGUCGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GA-)AUUCG CCAA-GCGU| UGGAU(UGUU C)ACCCACUA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-u<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->-guGU UG-UU-GC-C AUGGUAAUCC UGCU(CAGUA 8281 C(GAGA)GGA AC-)CGCAGG U|UCAGACAU UUGGUGUAUG UGC|-UUGGC U(GAGG)AGC 8341 CAAUGGGGCG a-AGCUACC- AU-CUGu--G GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCC-g CCCA-----g -GCG-aACGA U --|------( ---)------ 8701 -----aaacc |auucg(-ua gacga)cc-u gcuuc----u ggg|ucgggg uuucguacgu 8761 ag-cagagca gc----(ucc -cuc------ ---------- ---------- ---------- 8821 ----)----g cugcgauc-u au-|ugaaag u|cag--ccc u--cga-cac aa--ggg-uu 8881 uguc~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS H.sapien.3 9262 bp RNA RNA 11-JAN-191 DEFINITION Homo sapiens (Human). ACCESSION No information KEYWORDS No information. SOURCE Homo sapiens (Human). ORGANISM Homo sapiens (Human). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: from J01866, M11167 GC in 5.8 taken out due to U13369 Added GGC in D2 due to Qu et al 1988 (JME 28:113-124) LOCUS HUMRRB 159 bp ss-rRNA RNA 30-SEP-1988 DEFINITION Human 5.8S ribosomal RNA. ACCESSION J01866 - - h.sap28s COMMENTS - - LOCUS HUMRGM 5025 bp ds-DNA PRI 10-NOV-1986 DEFINITION Human 28S ribosomal RNA gene. ACCESSION M11167 BASE COUNT 831 a 1710 c 1856 g 788 t 4077 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~CGACUC UUAGCGGUGG AUC|ACUCGG 61 |CUCGUGC|G U|-CGAUGAA GAA|CGCA(- -GCUA-GC)U |GC-GAGAAU UA-augu|[- 121 gaauugcagg acacauugau ---------- ---------- ---------- -------]-- 181 ---------- ---------- ---caucg|A CACUUC-GAA Cgc-(acuu- )-g-c|ggcc 241 ccg------g g(-------- ---------- ---------- -----uucc- u--)cc---- 301 --cg-gggcu ---acgccug -u-cu-gagc gucg--(--- ---cuu---/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --------cg )--cgaccuc agaucaga-c gUG----GCG 481 AC|CCGCUGA -A--UU|UA( AGCA)UA-UU AGUCAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-C)AG-G AU|UCCCUCA GU---AAC(G GCGA)GUG-A A-----CAGG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -----gcgcc g--aaucccc 781 gccccg(cgg ---)cggggc gc-gggacau guggcguac- ggaagacccg --cuc---cc 841 cggcgccg-- ---------- ---------- ---------- ---------- cucgu-gggg 901 ggcc-caa-- --g-ucc-u( u-(cugauc- )g)agg-c-- ---------- -cc---agCC 961 --|C(GUG)G |ACGG-(UGU GAGG)-CCGG UA|--g-cgg cc---ggc-g c-----gc-- 1021 ---------- gcccgggu-c uucccg---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GCU(----UG 1141 GGAA)UGCAG CCCAAA---- GCGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAACUC-- ---------- ---------- ---------- )CAU-CUAAG GCU----AAA 1381 UA-------- ---------- CCGGC-ACGA GACCGAUAGU CAAC-AAGUA CC(GUAA)G- 1441 G-GAAAGUUG -AAA-AGAAC UUU(ga-ag- )AGAG-AGUU C-AAGAGGGC G-UGAAAC-C 1501 GUUAA-GAG< gu---aaacg gguggggucc gcgcaguc-c gcccggagga uucaacccgg 1561 cggcggg--u ccggccgugu cggcgg-ccc ggcggaucuu ucccgccccc cguuccuccc 1621 gaccccucca cccgc----- ---------- --ccuccc-- --uucccccg ccgccccucc 1681 uccuccuccc -c----ggag ggggcg---- ggcuccggcg g--------- ---gugcggg 1741 gg-ugggcgg gcggggccgg gggugggguc ggcgggggac cgucccccgg accggcgacc 1801 ggccgccgcc gggcgcauuu cca------- ggcggug-cg ccgcgac-cg gcuccgggac 1861 ggcugggaag gcccggc--- ---ggggaag guggcucggg gggccccguc cguccgucc- 1921 guccuccucc ucccccgucu ccgccccccg gccccgcguc cucccucggg a--gggcgcg 1981 cgggucggg- gcggcggcgg cggcggcggu ggcggcggcg gcgggggcgg cgggaccgaa 2041 accccccccg aguguu---a cagccccccc ggc-agc-ag cacucgccga aucccggggc 2101 cgagggagcg aga--cccgu cgccgcgcuc uccccccucc cggcgcccac ccccgcggga 2161 aucc---ccg cgaggggggu cuccccc--g gcgcggcgcc ggcgucuccu cguggggggg 2221 -ccgggccac cccucccacg gcgcgaccgc ucuccc-acc ccu-ccuccc c--gc-gccc 2281 ccgc-cccgg cgacgggggg ggugccgcgc gcgggucggg ggg-cggggc ggacuguccc 2341 cagugcgccc cgggcg-gg- ucgcgccguc gggccc-ggg gga------- ---------- 2401 ---------- ---------- gguucucucg gggccacgcg cgcguccccc gaagaggggg 2461 acggcggag- ---------- ---------- ---------c gagcgcacgg g-gucggcgg 2521 cg-------- ---------- acg-ucggcu a-cccacccg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACACGUGC GCGAGUCG-g gggcu----( ---cg-cacg 2641 aa)------- ---------- ---a-gccg- ---------- ccgUGGCGCA AU(GAAG)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 -aggccggcg -(cgcu---- --)-cgccgg cc-----gag gugggau-cc cgaggc---- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( cucuccaguc c---)----- ---------- --gccgaggg -gcaccaccg 3061 gcccgucucg ------cccg -------(-c cgcgc-)--- ---------- ---------- 3121 -cggg--gag gugg------ --------ag c]-------- ---------A CGAGCGCAC- 3181 -GUG-UUAGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- GG|C-AGGGC GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGU CCG-UA---G CG-GUCCUGA (CGUGCAAA) 3301 UCG-G-UCGU CCGACCUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGC -GCUc--|-- -|-ucgcaga cccgacgc-a ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- cccccgccac 3661 gcaguUUUAU -C|CGG--UA AA-GCGAAUG AUUAGAGGU- -----cUUGG GGCC--(gaa 3721 a-c)--GAUC U-CAA-|CCU AUUC-UCAAA CUUUA-AAUG |GGUAAGaag -cccggcuc( 3781 gcuggcgug) gagccggg-- gugg------ ---------- ---------- ---------- 3841 ---------- ---------- ----aaugc- g|AG-UGCCU -AGU-GGGCC -ACU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G CUGCGG(GA- UGAA)CCG-- AACGCCG--- GGUUAAG--G 3961 C|GCCC-gau g-CC-GA-CG CUCAU-ca-- --------ga ccccag---- -AAAAGGUGU 4021 U--GGUUGAU AUAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- GGAGCGUCG| G|-------- --GCCCAU-- --ACCCGGC| (- -----)-gcc gcgac-gAGU AGGA------ 4441 --GGG|-CCg CU-GC-GG-- --------u- -gaG-CCU-- u------GAA GCCU-----A 4501 G-GGC(GCGG -)GCCCGGG- UGG|AgGCC| G--CCGCAG- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- C(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GGCCGAAGU G-GAG|AAGG GUU|CCAUGU GA-ACA(-GC AGU)UG|AAC 4681 AUGGGUCAGU |-CGG-UCCU GAGA------ -(----)--- 4921 ----UC-GAA AGGGA-GU-C GGG(UUCAGA UC-)CCCGA| -AU----ccg ga-guggcgg 4981 ag[au----- ---------- ---------- gg-----g-- -c---gcc(- -gcga--)gg 5041 cgucc----- ---------- --------ag ugc-g(guaa -)cgcga-c] cga-ucccgg 5101 agaa-----g ccg--gcggg ag-c-cccg- -GG-GAGA(G UUCUCUUU-) UCUUUG-|UG 5161 A-agggca-- ---------- ggg|c--gcC CUGG--AAUG ----GG(UUC GC-)CCCGA- 5221 GA-GA-GGG- gcccg----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----ugcc-u uGG-----AA 5341 AGCGUCGCG( -guucc--)G GCGGCGUC-c ggugag---c -ucucg--cu ggcC-CUUGA 5401 AAA-uccggg -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggagaggg-- ---------- --uguaaauc --uc-gcg-- cc-gggCCGU 5581 A|CC--CAUA UCC(GCAGCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| GGCAU-||gu 5641 UG-G--AACA AU-GUAG-GU A-AGGGAAGU CGGCAA-GCC -GGAUCCGUA AC(UUCG)GG 5701 AUAAGGAUU| GGCUCUAAG- ---------- -(-----)---- -------CUU AGAACU|G(- --GUG)CGGA 6601 CCAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU CGCG|A--AG G|CCC(---g 6661 cggc)GGG-- ---------- --U-GUUGAC GCGAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----UGAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUGAA CGAGAUUCCC ACUGU-CCCU ACCUACUAUC 6901 CA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCG -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCU G---GCA-CG |GUGAAGAGA CAUGAGAGGU 7021 GUAGAAUAAG UGGGAGGCCc c--------- --<------- ---cggcgcc c-ccccggug 7081 (---uccc-- )cgcgagggg cccggggcgg gguccgcggc ccugc-->(- -----)---- 7141 ------gGGC C-GCCGGUGA AA-UACCACU |ACUCUGAU- -CGUUU-UUU CACUGAc--- 7201 ------(--- --)------| --g GACAG-UGCC A-GGUG-GGG AG-UUUGACU G(GGG)CGGU 7561 A-C|ACCUGU (CAAACGGUA AC-)GCAG-G U|G|U|CCU- AAGGC-GAGC |UCAGG-GAG 7621 -G(ACA---- GAAA)CCUCC CGUGGA|GC( A|G--AAGG) GCAAAAG-CU C-GCUUGAUC 7681 -UUGAUUU(u c--aguac-- )GAAUACAGA CCGU(-GAAA )GCGGGG|CC --UCA|CGA- 7741 UCCUUCUG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -acC-UUU(- -UGGG-U--U U---)----- ---------- 7861 -----UAA|G CAGGAG-gug uC|aGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCGGCCAAGC G(UUCAU)AG CGACGUCGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GA-)AUUCG CCAA-GCGU| UGGAU(UGUU C)ACCCACUA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-u<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->-guGU UG-UU-GC-C AUGGUAAUCC UGCU(CAGUA 8281 C(GAGA)GGA AC-)CGCAGG U|UCAGACAU UUGGUGUAUG UGC|-UUGGC U(GAGG)AGC 8341 CAAUGGGGCG a-AGCUACC- AU-CUGU--G GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCC-g CCCA-----g -GCG-aACGA U --|------( ---)------ 8701 -----aaacc |auucg(-ua gacga)cc-u gcuuc----u ggg|ucgggg uuucguacgu 8761 ag-cagagca gc----(ucc -cuc------ ---------- ---------- ---------- 8821 ----)----g cugcgauc-u au-|ugaaag u|cag--ccc u--cga-cac aa--ggg-uu 8881 uguc~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS H.sapien.4 9262 bp RNA RNA 15-JUN-1990 DEFINITION Homo sapiens.; 28S ribosomal RNA. ACCESSION M27830 KEYWORDS 28S ribosomal RNA. SOURCE Homo sapiens. ORGANISM Homo sapiens. REFERENCE 1 (bases 1 to 1955) AUTHORS Safrany,G., Kominami,R., Muramatsu,M. and Hidvegi,E.J. TITLE Transcription of human ribosomal DNA may terminate at multiple sites JOURNAL Gene 79, 299-307 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: M27830 BASE COUNT 102 a 184 c 190 g 114 t 8672 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~|~(~~~)~ |~~~~~(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~(~~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~]~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 3361 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~( 3781 ~~~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 (~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~GA-)AUUCA CCAA-GCGU| UGGAU(UGUU C)ACCCACUA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-u<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->-guGU UG-UU-GC-C AUGGUAAUCC UGCU(CAGUA 8281 C(GAGA)GGA AC-)CGCAGG U|UCAGACAU UUGGUGUAUG UGC|-UUGGC U(GAGG)AGC 8341 CAAUGGGGCG a-ACGUACC- AU-CUGu--G GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCC-g CCCA-----g -GCG-aACGA U --|------( ---)------ 8701 -----aaacc |auucg(-ua gacga)cc-u gcuuc----u ggg|ucgggg uuucguacgu 8761 ag-cagagca gc----(ucc -cuc------ ---------- ---------- ---------- 8821 ----)----g cugcgauc-u au-|ugaaag u|cag--ccc u--cga-cac aa--ggg-uu 8881 uguc~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS P.troglo.1 9262 bp RNA RNA 11-JAN-191 DEFINITION Pan troglodytes (Common Chimpanzee). ACCESSION No information KEYWORDS No information. SOURCE Pan troglodytes (Common Chimpanzee). ORGANISM Pan troglodytes (Common Chimpanzee). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: M30950 LOCUS CHPRGITX 2512 bp ds-DNA PRI 15-SEP-1990 DEFINITION Chimpanzee 28S ribosomal RNA gene fragment. ACCESSION M30950 KEYWORDS 28S ribosomal RNA. SOURCE Chimpanzee DNA. ORGANISM Pan troglodytes Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Primates; Haplorhini; Catarrhini; Pongidae. REFERENCE 1 (bases 1 to 2512) AUTHORS Gonzalez,I.L., Sylvester,J.E., Smith,T.F., Stambolian,D. and Schmickel,R.D. JOURNAL Unpublished (1990) STANDARD full staff_review REFERENCE 2 (bases 193 to 261; 375 to 945; 1042 to 1079; 1334 to 1357; 1742 to 1958; 2190 to 2204) AUTHORS Gonzalez,I.L., Sylvester,J.E., Smith,T.F., Stambolian,D. and Schmickel,R.D. TITLE Ribosomal RNA gene sequences and hominoid phylogeny JOURNAL Mol. Biol. Evol. 7, 203-219 (1990) STANDARD full staff_review COMMENT Draft entry and computer-readable sequence for [2],[1] kindly submitted by I.L.Gonzalez, 20-DEC-1989. FEATURES Location/Qualifiers rRNA <1..>2512 /note="28S ribosomal RNA" BASE COUNT 397 a 837 c 924 g 354 t ORIGIN Chromosomes 14, 15, 17, 22, 23. BASE COUNT 397 a 837 c 924 g 354 t 6750 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~|~(~~~)~ |~~~~~(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~GU CAAC-AAGUA CC(GUAA)G- 1441 G-GAAAGUUG -AAA-AGAAC UUU(ga-ag- )AGAG-AGUU C-AAGAGGGC G-UGAAAC-C 1501 GUUAA-GAG< gu---aaacg gguggggucc gcgcaguc-c gcccggagga uucaacccgg 1561 cggcggg--u ccggccgugu cggcgg-ccc ggcggaucuu ucccgccccc cguuccuccc 1621 gaccccucca cccgc----- ---------- --ccuccc-- -uuccccccg ccgccccucc 1681 uccuccuccc -c----ggag ggggcg---- ggcuccggcg g--------- ---gugcggg 1741 gg-ugggcgg gcggggccgg gggugggguc ggcgggggac cgucccccg- accggcgacc 1801 ggccgccgcc gggcgcauuu ccaccgc--- ggcggug-cg ccgcgac-cg gcuccgggac 1861 ggcugggaag gcccggc--- ---ggggaag guggcucggg gggccccguc cguccuccu- 1921 -----ccucc ccccccgucu ccgccccccg gccccgcguc cucccccggg a--gggcgcg 1981 cgggucggg- gcgguggcgg cggcggcggc gguggcggcg guggc---gg cgggaccgaa 2041 accccccccg aguguu---a cagcccc-cc ggc-agc-ag cacucgccga aucccggggc 2101 cgagggagcg aga--cccgu cgccgcgcuc uccccccucc cggcgcccac ccccgcgggg 2161 auauccuccg cgaggggggu cucccccgcg ggggcgcgcc ggcgucuccu cguggggggg 2221 -ccgggccac cccucccacg gcgcgaccgc ucuccc-acc ccu-ccuccc cgcaa-cccc 2281 ccucucccgg cgacggggag --ggccgcgc gcgggucggg ggg-cggggc ggacuguccc 2341 cagugcgccc cgggcg-gg- ucgcgccguc gggccc-ggg gga------- ---------- 2401 ---------- ---------- gguucucucg gggccacgcg cgcguccccc gaagaggggg 2461 acggcggagc ---------- ---------- ---------c gagcgcacgg g-gucggcgg 2521 cg-------- ---------- aug-ucggcc a-cccacccg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACACGUGC GCGAGUCG-g gggcu----( ---cg-cacg 2641 aa)------- ---------- ---a-gccg- ---------- ccgUGGCGCA AU(GAAG)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 -aggccggcg -(cgcu---- --)-cgccgg cc-----gag gugggau-cc -gaggc---- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( cucuccaguc c---)----- ---------- --gccgaggg cgcaccaccg 3061 gcccgucucg ------cccg -------(-c cgcgc-)--- ---------- ---------- 3121 -cggg--gag gugg------ --------ag c]-------- ---------A CGAGCGCAC- 3181 -GUG-UUAGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- GG|C-AGGGC -AAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGU CCG-UA---G CG-GUCCUGA (CGUGCAAA) 3301 UCG-G-UCGU CCGACCUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGC -GCUc--|-- -|-ucgcaga cccgacgcac ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- acccccccac 3661 gcaguUUUAU -C|CGG--UA AA-GCGAAUG AUUAGAGGU- -----cUUGG GGCC--(gaa 3721 a-c)--GAUC U-CAA-|CCU AUUC-UCAAA CUUUA-AAUG |GGUAAGaag -cccggcuc( 3781 gcuggcgug) gagccggg-- gugg------ ---------- ---------- ---------- 3841 ---------- ---------- ----aaugc- g|AG-UGCCU -AGU-GGGCC -ACU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G CUGCGG(GA- UGAA)CCG-- AACGCCG--- GGUUAAG--G 3961 C|GCCC-gau g-CC-GA-CG CUCAU-ca-- --------ga ccccag---- -AAAAGGUGU 4021 U--GGUUGAU AUAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- GGAGCGUCG| G|-------- --GCCCAU-- --ACCCGGC| (- -----)-gcc gcgac-gAGU AGGA------ 4441 --GGG|-CCg CU-GC-GG-- --------u- -gaG-CCU-- u------GAA GCCU-----A 4501 G-GGC(GCGG -)GCCCGGG- UGG|A-GCC| G--CCGCAG- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- C(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GGCCGAAGU G-GAG|AAGG GUU|CCAUGU GA-ACA(-GC AGU)UG|AAC 4681 AUGGGUCAGU |-CGG-UCCU GAGA------ -(----)--- 4921 ----UC-GAA AGGGA-GU-C GGG(UUCAGA UC-)CCCGA| -AU----ccg ga-guggcgg 4981 ag[au----- ---------- ---------- gg-----g-- -c---gcc(- -gcga--)gg 5041 cgucc----- ---------- --------ag ugc-g(guaa -)cgcga-c] cga-ucccgg 5101 agaa-----g ccg--gcggg ag-c-cccg- -GG-GAGA(G UUCUCUUU-) UCUUUG-|UG 5161 A-agggca-- ---------- ggg|c--gcC CUGG--AAUG ----GG(UUC GC-)CCCGA- 5221 GA-GA-GGG- gcccg----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----ugcc-u uGG-----AA 5341 AGCGUCGCG( -guucc--)G GCGGCGUC-c ggugag---c -ucucg--cu ggcC-CUUGA 5401 AAA-uccggg -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggagaggg-- ---------- --uguaaauc --uc-gcg-- cc-gggCCGU 5581 A|CC--CAUA UCC(GCAGCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| GGCAU-||gu 5641 UG-G--AACA AU-GUAG-GU A-AGGGAAGU CGGCAA-GCC -GGAUCC~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~-~~~ ~|~~~(~--~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~-~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~-|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 (~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-->(- ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ -~~~~~-~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ -~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(- -~~~~~~~~~ ~~~-)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~-)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS P.troglo.2 9262 bp RNA RNA 10-NOV-1986 DEFINITION Pan troglodytes.; 28S ribosomal RNA; ribosomal RNA. ACCESSION K03429 KEYWORDS 28S ribosomal RNA; ribosomal RNA. SOURCE Pan troglodytes. ORGANISM Pan troglodytes. REFERENCE 1 (bases 1 to 1439) AUTHORS ,J.M., Sylvester,J.E. and Schmickel,R.D. Gonzalez,I.L., Gorski,J.L., Campen,T.J., Dorney,D.J., Erickson TITLE Variation among human 28S ribosomal RNA genes JOURNAL Proc. Natl. Acad. Sci. U.S.A. 82, 7666-7670 (1985) STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: K03429 BASE COUNT 273 a 419 c 512 g 235 t 7823 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~|~(~~~)~ |~~~~~(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~- 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------~ 2881 ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~ggau-cc -gaggc---- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( cucuccaguc c---)----- ---------- --gccgaggg -gcaccaccg 3061 gcccgucucg ------cccg -------(-c cgcgc-)--- ---------- ---------- 3121 -cggg--gag gugg------ --------ag c]-------- ---------A CGAGCGCAC- 3181 -GUG-UUAGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- GG|C-AGGGC GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGU CCG-UA---G CG-GUCCUGA (CGUGCAAA) 3301 UCG-G-UCGU CCGACCUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGC -CCUc--|-- -|-ucgcaga cccgacgcac ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- accccccc-c 3661 gcaguUUUAU -C|CGG--UA AA-GCGAAUG AUUAGAGGU- -----cUUGG GGCC--(gaa 3721 a-c)--GAUC U-CAA-|CCU AUUC-UCAAA CUUUA-AAUG |GGUAAGaag -cccggcuc( 3781 gcuggcgug) gagccggg-- gugg------ ---------- ---------- ---------- 3841 ---------- ---------- ----aaugc- g|AG-UGCCU -AGU-GGGCC -ACU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G CUGCGG(GA- UGAA)CCG-- AACGCCG--- GGUUAAG--G 3961 C|GCCC-gau g-CC-GA-CG CUCAU-ca-- --------ga ccccag---- -AAAAGGUGU 4021 U--GGUUGAU AUAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- GGAGCGUCG| G|-------- --GCCCAU-- --ACCCGGC| (- -----)-gcc gcgac-gAGU AGGA------ 4441 --GGG|-CCg CU-GC-GG-- --------u- -gag-ccu-- u------GAA GCCU-----A 4501 G-GGC(GCGG -)GCCCGGG- UGG|AgGCC| G--CCGCAG- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- C(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GGCCGAAGU G-GAG|AAGG GUU|CCAUGU GA-ACA(-GC AGU)UG|AAC 4681 AUGGGUCAGU |-CGG-UCCU GAGA------ -(----)--- 4921 ----UC-GAA AGGGA-GU-C GGG(UUCAGA UC-)CCCGA| -AU----ccg ga-guggcgg 4981 ag[au----- ---------- ---------- gg-----g-- -c---gcc(- -gcga--)gg 5041 cgucc----- ---------- --------ag ugc-g(guaa -)cgcga-c] cga-ucccgg 5101 agaa-----g ccg--gcggg ag-c-cccg- -GG-GAGA(G UUCUCUUU-) UCUUUG-|UG 5161 A-agggca-- ---------- ggg|c--gcC CUGG--AAUG ----GG(UUC GC-)CCCGA- 5221 GA-GA-GGG- gcccg----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----ugcc-u uGG-----AA 5341 AGCGUCGCG( -guucc--)G GCGGCGUC-c ggugag---c -ucucg--cu ggcC-CUUGA 5401 AAA-uccggg -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggagaggg-- ---------- --uguaaauc --uc-gcg-- cc-gggCCGU 5581 A|CC--CAUA UCC(GCAGCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| GGCAU-||gu 5641 UG-G--AACA AU-GUAG-GU A-AGGGAAGU CGGCAA-GCC -GGAUCC~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~-~~~ ~|~~~(~--~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~-~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~-|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 (~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-->(- ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ -~~~~~-~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ -~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(- -~~~~~~~~~ ~~~-)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~-)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS P.pygmaeus 9262 bp RNA RNA 11-JAN-191 DEFINITION Pongo pygmaeus. ACCESSION No information KEYWORDS No information. SOURCE Pongo pygmaeus. ORGANISM Pongo pygmaeus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: M30952 LOCUS ORARGITX 2487 bp ds-DNA PRI 15-SEP-1990 DEFINITION Orangutan 28S ribosomal RNA gene fragment. ACCESSION M30952 KEYWORDS 28S ribosomal RNA. SOURCE Orangutan DNA. ORGANISM Pongo pygmaeus Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia; Theria; Eutheria; Primates; Haplorhini; Catarrhini; Pongidae. REFERENCE 1 (bases 1 to 2487) AUTHORS Gonzalez,I.L., Sylvester,J.E., Smith,T.F., Stambolian,D. and Schmickel,R.D. JOURNAL Unpublished (1990) STANDARD full staff_review REFERENCE 2 (bases 193 to 263; 377 to 985; 1084 to 1120; 1376 to 1394; 1780 to 1933; 2165 to 2179) AUTHORS Gonzalez,I.L., Sylvester,J.E., Smith,T.F., Stambolian,D. and Schmickel,R.D. TITLE Ribosomal RNA gene sequences and hominoid phylogeny JOURNAL Mol. Biol. Evol. 7, 203-219 (1990) STANDARD full staff_review COMMENT Draft entry and computer-readable sequence for [2],[1] kindly submitted by I.L.Gonzalez, 20-DEC-1989. FEATURES Location/Qualifiers rRNA <1..>2487 /note="28S ribosomal RNA" BASE COUNT 393 a 814 c 921 g 359 t ORIGIN Chromosomes 11, 12, 13, 14, 15, 16, 17, 22, 23. BASE COUNT 393 a 814 c 921 g 359 t 6775 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~|~(~~~)~ |~~~~~(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~GU CAAC-AAGUA CC(GUAA)G- 1441 G-GAAAGUUG -AAA-AGAAC UUU(ga-ag- )AGAG-AGUU C-AAGAGGGC G-UGAAAC-C 1501 GUUAA-GAG< gu---aaacg gguggggucc gcgcaguc-c gcccggagga uucaacccgg 1561 cggcggg--u ccggccgugu cggcgg-ccc ggcggaucuu ucccgccccc cguuccuccc 1621 gaccccucca cccgc----- ---------- --ccuccc-- ---ucccccg ccgccccucc 1681 uccuccuccc -cgcggggag ggggcg---- ggcuccggcg g--------- ---gugcggg 1741 gg-ugggcgg gcggggccgg gggugggguc ggcgggggac cgucccccg- accggcgacc 1801 ggccgccgcc gggcgcauuu ccaccgc--- ggcggug-cg ccgcgac-cg gcuccgggac 1861 ggcugggaag gcccggu--- ---ggggaag guggcucggg gggccccguc cguccguccg 1921 uccguccucc ucccuccucc ccccucgucu uccccccggc cccgcguccu cccucgggag 1981 ggcgcgcggg ucgggggcgg cggcgggggu ggcugcugcu gcugcugcgg cggcggcggg 2041 accgaacccc ccgaguguua cagcc---cc ggc-agc-ag cgcucgccga a-cccggggc 2101 cgagggagcg aga--cccgu cgccgcgcuc uccccccucc cggcgcccac ccccgcgggg 2161 guccc--ccg cgaggggg-u cccccccgcg ggggcgcgcc ggcgucuccu cgcguggggg 2221 gccgggccgc cccucccacg gcgcgaccgc ucuccc-acc ccc-cccuuc cccgc-gcac 2281 c----cccgg cgacggggg- ----cc-cgc gcgggcgggg ggggcggggc ggacuguccc 2341 cagugcgccc cgggcg-gg- ucgcgccguc gggccc-ggg gaagagagag ggagaggagg 2401 g-gguucucc uccu-ccucc uccccucucg gggccacgcg cgcgucccuc gaagaggggg 2461 acggcggagc ---------- ---------- ---------c gagcgcacgg g-gucggcgg 2521 cg-------- ---------- aug-ucggcc a-cccacccg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACACGUGC GCGAGUCG-g gggcu----( ---cg-cacg 2641 aa)------- ---------- ---a-gccg- ---------- ccgUGGCGCA AU(GAAG)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 -aggccggcg -(cgcu---- --)-cgccgg cc-----gag gugggau-cc cgaggc---- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( cucuccaguc c---)----- ---------- --gccgaggg cgcaccaccg 3061 gcccgucucg ------cccg -------(-c cgcgc-)--- ---------- ---------- 3121 -cggg--gag gugg------ --------ag c]-------- ---------A CGAGCGCAC- 3181 -GUG-UUAGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- GG|C-AGGGC GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGU CCG-UA---G CG-GUCCUGA (CGUGCAAA) 3301 UCG-G-UCGU CCGACCUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGC -GCUc--|-- -|-ucgcaga cucgaccgac ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- cgac-----c 3661 gcaguUUUAU -C|CGG--UA AA-GCGAAUG AUUAGAGGU- -----cUUGG GGCC--(gaa 3721 a-c)--GAUC U-CAA-|CCU AUUC-UCAAA CUUUA-AAUG |GGUAAGaag -cccggcuc( 3781 gcuggcgug) gagccggg-c gugg------ ---------- ---------- ---------- 3841 ---------- ---------- ----aaugc- g|AG-UGCCU -AGU-GGGCC -ACU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G CUGCGG(GA- UGAA)CCG-- AACGCCG--- GGUUAAG--G 3961 C|GCCC-gau g-CC-GA-CG CUCAU-ca-- --------ga ccccag---- -AAAAGGUGU 4021 U--GGUUGAU AUAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- GGAGCGUCG| G|-------- --GCCCAU-- --ACCCGGC| (- -----)-gcc gcgac-gAGU AGGA------ 4441 --GGG|-CCg CU-GC-GG-- --------u- -gaG-CCU-- u------GAA GCCC-----A 4501 G-GGC(GCGG -)GCCCGGG- UGG|A-GCC| G--CCGCAG- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- C(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GGCCGAAGU G-GAG|AAGG GUU|CCAUGU GA-ACA(-GC AGU)UG|AAC 4681 AUGGGUCAGU |-CGG-UCCU GAGA------ -(----)--- 4921 ----UC-GAA AGGGA-GU-C GGG(UUCAGA UC-)CCCGA| -AU----ccg ga-guggcgg 4981 ag[ac----- ---------- ---------- gg-----g-- -c---gcc(- -gcga--)gg 5041 cgucc----- ---------- --------ag ugc-g(guaa -)cgcga-c] cga-ucccgg 5101 agaa-----g ccg--gcggg ag-c-cccg- -GG-GAGA(G UUCUCUUU-) UCUUUG-|UG 5161 A-agggca-- ---------- ggg|c--gcC CUGG--AAUG ----GG(UUC GC-)CCCGA- 5221 GA-GA-GGG- gcccg----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----ugcc-u uGG-----AA 5341 AGCGUCGCG( -guucc--)G GCGGCGUC-c ggugag---c -ucucg--cu ggcC-CUUGA 5401 AAA-uccggg -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggagaggg-- ---------- --uguaaauc --uc-gcg-- cc-gggCCGU 5581 A|CC--CAUA UCC(GCAGCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| GGCAU-||gu 5641 UG-G--AACA AU-GUAG-GU A-AGGGAAGU CGGCAA-GCC -GGAUCC~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~-~~~ ~|~~~(~--~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~-~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~-|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 (~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-->(- ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ -~~~~~-~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ -~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(- -~~~~~~~~~ ~~~-)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~-)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~(~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (19)-Roden 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS M.musculus 9262 bp RNA RNA 11-JAN-191 DEFINITION Mus musculus (Mouse). ACCESSION No information KEYWORDS No information. SOURCE Mus musculus (Mouse). ORGANISM Mus musculus (Mouse). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: J01871, X00525 (This sequence is the same as M19226 over all of M19226)is this Simon again??????? BASE COUNT 819 a 1506 c 1722 g 822 t 4393 others ORIGIN 1 |--------- ---------- ---------- ----CGACUC UUAGCGGUGG AUC|ACUCGG 61 |CUCGUGC|G U|-CGAUGAA GAA|CGCA(- -GCUA-GC)U |GC-GAGAAU UA-augu|[- 121 gaauugcagg acacauugau ---------- ---------- ---------- -------]-- 181 ---------- ---------- ---caucg|A CACUUC-GAA Cgc-(acuu- )-g-c|ggcc 241 ccg------g g(-------- ---------- ---------- -----uucc- u--)cc---- 301 --cg-gggcu ---acgccug -u-cu-gagc gucg--(--- ---cuu---/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --------cg )--cgaccuc agaucaga-c gUG----GCG 481 AC|CCGCUGA -A--UU|UA( AGCA)UA-UU AGUCAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-C)AG-G AU|UCCCUCA GU---AAC(G GCGA)GUG-A A-----CAGG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -----gcgcc g--aaucccc 781 gccgcg(cgu ---)cgcggc gu-gggaaau guggcguac- ggaagaccc- acuc----cc 841 cggcgccg-- ---------- ---------- ---------- ---------- cucgu-gggg 901 ggcc-caa-- --g-ucc-u( u-(cugauc- )g)agg-c-- ---------- -cc---agCC 961 --|C(GUG)G |ACGG-(UGU GAGG)-CCGG UA|--g-cgg cccccggc-g c-----gccg 1021 g--------- gcucgggu-c uucccg---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GCU(----UG 1141 GGAA)UGCAG CCCAAA---- GCGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAACUC-- ---------- ---------- ---------- )CAU-CUAAG GCU----AAA 1381 UA-------- ---------- CCGGC-ACGA GACCGAUAGU CAAC-AAGUA CC(GUAA)G- 1441 G-GAAAGUUG -AAA-AGAAC UUU(ga-ag- )AGAG-AGUU C-AAGAGGGC G-UGAAAC-C 1501 GUUAA-GAG< gu---aaacg gguggggucc gcgcaguc-c gcccggagga uucaacccgg 1561 cggcgcgcgu ccggccgugc cggugguccc ggcggaucuu ucccgcuccc cguuccuccc 1621 gaccccucca cccgcgcguc g-uuccccuc uuccuccccg cguccggcgc uccggcggcg 1681 ggcg------ ---cgggggg u--------- ---------- ---------- gguguggugg 1741 uggcgcgcgg gcggggccgg gggugggguc ggcgggggac cg-cccccg- gccggcgacc 1801 ggccgccgcc gggcgcacuu ccaccgu--- ggcggug-cg ccgcgac-cg gcuccgggac 1861 ggccgggaag gcccggu--- ---ggggaag guggcucggg ggg------- ---------- 1921 ---------- ---------- -----ggcgg cgcgucucag ggcgcg---- ---------- 1981 ---------- ---------- ---------- ---------- ccgaaccacc uca------- 2041 -----ccccg aguguu---a cagcccu-cc ggc-cgc--g cuuucgccga aucccggggc 2101 cgaggaagcc agauacccgu cgccgcgcuc ucccucuccc cccguccgcc ucc------- 2161 cgggcgggcg ugggg----- ---------- ---------- ------gug- ------gggg 2221 -ccgggccgc cccucccacg gcgcgaccgc ucuccc-acc cc--ccuccg ucgccucucu 2281 cggggccc-- ---------- ---------- ---ggu-ggg ggg-cggggc ggacuguccc 2341 cagugcgccc cgggcgucg- ucgcgccguc gggucccggg gggaccgucg gucacgcguc 2401 u-ccc----- ---------- --gacgaagc ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------c gagcgcacgg g-gucggcgg 2521 cg-------- ---------- aug-ucggcu a-cccacccg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACGCGUGC GCGAGUCA-g gggcu----( ---cg-uccg 2641 aa)------- ---------- ---a-gccg- ---------- ccgUGGCGCA AU(GAAG)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 -aggg-cccc -(gcccg--- --)-gggg-c cc-----gag gugggau-cc cgaggc---- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( cucuccaguc c---)----- ---------- --gccgaggg cgcaccaccg 3061 gcccgucucg ------cccg -------(-c cgcgc-)--- ---------- ---------- 3121 -cggg--gag gugg------ --------ag c]-------- ---------A CGAGCGUAC- 3181 -GCG-UUAGG ACCCGAAAGA U-GGUG-AAC UAUG-CUUG- GG|C-AGGGC GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGU CCG-UA---G CG-GUCCUGA (CGUGCAAA) 3301 UCG-G-UCGU CCGACCUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGC -GCUc--|-- -|-ucgc--u cccgacgu-- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------ac 3661 gcaguUUUAU -C|CGG--UA AA-GCGAAUG AUUAGAGGU- -----cUUGG GGCC--(gaa 3721 a-c)--GAUC U-CAA-|CCU AUUC-UCAAA CUUUA-AAUG |GGUAAGaag -cccggcuc( 3781 gcuggcgug) gagccggg-c gugg------ ---------- ---------- ---------- 3841 ---------- ---------- ----aaugc- g|AG-UGCCU -AGU-GGGCC -ACU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G CUGCGG(GA- UGAA)CCG-- AACGCCG--- GGUUAAG--G 3961 C|GCCC-gau g-CC-GA-CG CUCAU-ca-- --------ga ccccag---- -AAAAGGUGU 4021 U--GGUUGAU AUAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- GGAGCGUCG| G|-------- --GCCCAU-- --ACCCGGC| (- -----)-gcc gcgac-gAGU AGGA------ 4441 --GGG|-CCg CU-GC-GG-- --------u- -gaG-CCU-- u------GAA GCCU-----A 4501 G-GGC(GCGG -)GCCCGGG- UGG|A-GCC| G--CCGCAG- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- C(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GGCCGAAGU G-GAG|AAGG GUU|CCAUGU GA-ACA(-GC AGU)UG|AAC 4681 AUGGGUCAGU |-CGG-UCCU GAGA------ -(----)--- 4921 ----UC-GAA AGGGA-GU-C GGG(UUCAGA UC-)CCCGA| -AU----ccg ga-guggcgg 4981 ag[augggc- ---------- ---------- ---------- -----gcc(- -gcga--)gg 5041 c--------- ---------- -------cag ugc-g(guaa -)cgcga-c] cga-ucccgg 5101 agaa-----g ccg--gcggg aggc-cucg- -GG-GAGA(G UUCUCUUU-) UCUUUG-|UG 5161 A-agggca-- ---------- ggg|c--gcC CUGG--AAUG ----GG(UUC GC-)CCCGA- 5221 GA-GA-GGG- gcccg----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----ugcc-u uGG-----AA 5341 AGCGUCGCG( -guucc--)G GCGGCGUC-c ggugag---c -ucucg--cu ggcC-CUUGA 5401 AAA-uccggg -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggagaggg-- ---------- --uguaaauc --uc-gcg-- cc-gggCCGU 5581 A|CC--CAUA UCC(GCAGCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| GGCAU-||gu 5641 UG-G--AACA AU-GUAG-GU A-AGGGAAGU CGGCAA-GCC -GGAUCCGUA AC(UUCG)GG 5701 AUAAGGAUU| GGCUCUAAG- ---------- -(-----)---- -------CUU AGAACU|G(- --GUG)CGGA 6601 CCAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU CGCG|A--AG G|CCC(---g 6661 cggc)GGG-- ---------- --U-GUUGAC GCGAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----UGAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUGAA CGAGAUUCCC ACUGU-CCCU ACCUACUAUC 6901 CA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCG -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCU G---GCA-CG |GUGAAGAGA CAUGAGAGGU 7021 GUAGAAUAAG UGGGAGGCCc c--------- --<------- ---cggcgcc cggccccg-- 7081 (uccucgcgu )cggggucg- -gggcac--- --g-c-cggc cucgc-->(- -----)---- 7141 ------gGGC C-GCCGGUGA AA-UACCACU |ACUCUCAU- -CGUUU-UUU CACUGAc--- 7201 ------(--- --)------| --g GACAG-UGCC A-GGUG-GGG AG-UUUGACU G(GGG)CGGU 7561 A-C|ACCUGU (CAAACGGUA AC-)GCAG-G U|G|U|CCU- AAGGC-GAGC |UCAGG-GAG 7621 -G(ACA---- GAAA)CCUCC CGUGGA|GC( A|G--AAGG) GCAAAAG-CU C-GCUUGAUC 7681 -UUGAUUU(u c--aguac-- )GAAUACAGA CCGU(-GAAA )GCGGGG|CC --UCA|CGA- 7741 UCCUUCUG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -acC-UUU(- -UGGG-U--U U---)----- ---------- 7861 -----UAA|G CAGGAG-gug uC|aGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCGGCCAAGC G(UUCAU)AG CGACGUCGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GA-)AUUCA CCAA-GCGU| UGGAU(UGUU C)ACCCACUA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-u<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->-guGU UG-UU-GC-C AUGGUAAUCC UGCU(CAGUA 8281 C(GAGA)GGA AC-)CGCAGG U|UCAGACAU UUGGUGUAUG UGC|-UUGGC U(GAGG)AGC 8341 CAAUGGGGCG a-AGCUACC- AU-CUGU--G GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCC--g CCCA-----a -GCGgaACGA U --|------( ---)------ 8701 -----aaacc |auucg(-ua gacga)cc-u gcuuc----u ggg|ucgggg uuucguacgu 8761 ag-cagagca gc----(ucc -cuc------ ---------- ---------- ---------- 8821 ----)----g cugcgauc-u au-|ugaaag u|cag--ccc u--cga-cac aa--ggg-uu 8881 ugu--|---- ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS R.norvegic 9262 bp RNA RNA 11-JAN-191 DEFINITION Rattus norvegicus (Rat). ACCESSION No information KEYWORDS No information. SOURCE Rattus norvegicus (Rat). ORGANISM Rattus norvegicus (Rat). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: J01881+V01270 BASE COUNT 814 a 1568 c 1755 g 806 t 4319 others ORIGIN 1 |--------- ---------- ---------- ----CGACUC UUAGCGGUGG AUC|ACUCGG 61 |CUCGUGC|G U|-CGAUGAA GAA|CGCA(g cGCUA-GC)U |GC-GAGAAU UA-augu|[- 121 gaauugcagg acacauugau ---------- ---------- ---------- -------]-- 181 ---------- ---------- ---caucg|A CACUUC-GAA Cgc-(acuu- )-g-c|ggcc 241 ccg------g g(-------- ---------- ---------- -----uucc- u--)cc---- 301 --cg-gggcu ---acgccug -u-cu-gagc gucg--(--- ---cu----/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --------cg )--cgaccuc agaucaga-c gUG----GCG 481 AC|CCGCUGA -A--UU|UA( AGCA)UA-UU AGUCAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-C)AG-G AU|UCCCUCA GU---AAC(G GCGA)GUG-A A-----CAGG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -----gcgcc g--aaucccc 781 gccgcg(cgc ---)cgcggc gc-gggaaau guggcguac- ggaagaccc- acuc----cc 841 cggcgccg-- ---------- ---------- ---------- ---------- cucgu-gggg 901 ggcc-caa-- --g-ucc-u( u-(cugauc- )g)agg-c-- ---------- -cc---agCC 961 --|C(GUG)G |ACGG-(UGU GAGG)-CCGG UA|--g-cgg cccc-ggc-g c-----gccg 1021 g--------- gcccgggu-c uucccg---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GCU(----UG 1141 GGAA)UGCAG CCCAAA---- GCGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAACUC-- ---------- ---------- ---------- )CAU-CUAAG GCU----AAA 1381 UA-------- ---------- CCGGC-ACGA GACCGAUAGC CAAC-AAGUA CC(GUAA)G- 1441 G-GAAAGUUG -AAA-AGAAC UUU(ga-ag- )AGAG-AGUU C-AAGAGGGC G-UGAAAC-C 1501 GUUAA-GAG< gu---aaacg gguggggucc gcgcaguc-c gcccggagga uucaacccgg 1561 cggcgcgc-g ccggccg-gc cggugguccc ggcggaucuu ucccgcuccc cguuccuccc 1621 gaccccucca cccgcgcguc --ucucuccc cccuccccgc guc-ccgccg ucgccguccc 1681 cgcuccuccc uccggggggg ugucggcggg cgcuccggcg gcgggcgcgg gguguggugg 1741 gggcgcgcgg gcggggccgg gggugggguc ggcgggggac cg-cccccg- gucggcgacc 1801 ggccgccgcc gggcgcacuu ccaccgu--- ggcggug-cg ccgcgac-cg gcuccgggac 1861 ggcugggaag gcccggc--- ---ggggaag guggcucggg ggg------- ---------- 1921 ---------- ---------- -----ggcgg cgu-cacccg ugggcg---- ---------- 1981 ---------- ---------- ---------- ---------- ccggaccacc ccg------- 2041 -----ccccg aguguu---a cagcccc-cc ggc-agc-ag cgcucgccga aucccggggc 2101 cgagggagcc ggauacccgu cgccgcgcuc uccccccggc cucuccccuc ccgccccucc 2161 ccguggggug gcggaaaggg gggcgguc-- ---------- ------gcg- ------gggg 2221 -ccgggccgc cccucccacg gcgcgaccgc ucuccc-acc cc--ccgucg ccuccgucgu 2281 cccucucggg gguccggg-- ---------- --ggcccggg ggg-cggggc ggacuguccc 2341 cagugcgccc cgggcgucg- ucgcgccguc gggccc-ggg ggggccgucg ucacgcgcuc 2401 u-cccucccc uucu-cgggg ugggggggag cgaagc---- ---------- ---------- 2461 ---------- ---------- ---------- ---------c gagcgcacgg g-gucggcgg 2521 cg-------- ---------- aug-ucggcu a-cccacccg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACGCGUGC GCGAGUCA-g gggcu----( ---cg-uccg 2641 aa)------- ---------- ---a-gccg- ---------- ccgUGGCGCA AU(GAAG)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 -aggg-cccc -(guucccg- --)-ggggcc cc-----gag gugggau-cc cgaggc---- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( cucuccaguc c---)----- ---------- --gccgaggg cgcaccaccg 3061 gcccgucucg ------cccg -------(-c cgcgc-)--- ---------- ---------- 3121 -cggg--gag gugg------ --------ag c]-------- ---------A CGAGCGUAC- 3181 -GCG-UUAGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- GG|C-AGGGC GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGU CCG-UA---G CG-GUCCUGA (CGUGCAAA) 3301 UCG-G-UCGU CCGACCUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGC -GCUc--|-- -|-ucgcaac gcguucgc-u ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- cg-acaaccc 3661 gcaguUUUAU -C|CGG--UA AA-GCGAAUG AUUAGAGGU- -----cUUGG GGCC--(gaa 3721 a-c)--GAUC U-CAA-|CCU AUUC-UCAAA CUUUA-AAUG |GGUAAGaag -cccggcuc( 3781 gcuggcgug) gagccggg-c gugg------ ---------- ---------- ---------- 3841 ---------- ---------- -----augc- g|AG-UGCCU -AGU-GGGCC -ACU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G CUGCGG(GA- UGAA)CCG-- AACGCCG--- GGUUAAG--G 3961 C|GCCC-gau g-CC-GA-CG CUCAU-ca-- --------ga ccccag---- -AAAAGGUGU 4021 U--GGUUGAU AUAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UA-)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- GGAGCGUCG| G|-------- --GCCCAU-- --ACCCGGC| (- -----)-gcc gcgac-gAGU AGGA------ 4441 --GGG|-CCg CU-GC-GG-- --------u- -gaG-CCU-- u------GAA GCCU-----A 4501 G-GGC(GCGG -)GCCCGGG- UGG|A-GCC| G--CCGCAG- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- C(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GGCCGAAGU G-GAG|AAGG GUU|CCAUGU GA-ACA(-GC AGU)UG|AAC 4681 AUGGGUCAGU |-CGG-UCCU GAGA------ -(----)--- 4921 ----UC-GAA AGGGA-GU-C GGG(UUCAGA UC-)CCCGA| -AU----ccg ga-guggcgg 4981 ag[au----- ---------- ---------- gg-----g-- -c---gcc(- -gcga--)gg 5041 cgucc----- ---------- --------ag ugccg(guaa -)cgcga-c] cga-ucccgg 5101 agaa-----g ccg--gcggg ag-c--ccg- -GG-GAGA(G UUCUCUUU-) UCUUUG-|UG 5161 A-agggca-- ---------- ggg|c--gcC UUGG--AAUG ----GG(UUC GC-)CCCGA- 5221 GA-GA-GGG- gcccg----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----ugcc-u uGG-----AA 5341 AGCGUCGCG( -guucc--)G GCGGCGUC-c ggugag---c -ucucg--cu ggcC-CUUGA 5401 AAA-uccggg -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggagaggg-- ---------- --uguaaauc --uc-gcg-- cc-gggCCGU 5581 A|CC--CAUA UCC(GCAGCA )GG|UCU-CC AAGGU(GAAC -)GCCUCU-| GGCAU-||gu 5641 UG-G--AACA AU-GUAG-GU A-AGGGAAG- CGGCAA-GCC -GGAUCCGUA AC(UUCG)GG 5701 AUAAGGAUU| GGCUCUAAG- ---------- -(-----)---- -------CUU AGAACU|G(- --GUG)CGGA 6601 CCAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU CGCG|A--AG G|CCC(---g 6661 cggc)GGG-- ---------- --U-GUUGAC GCGAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----UGAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUGAA CGAGAUUCCC ACUGU-CCCU ACCUACUAUC 6901 CA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCG -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCU G---GCA-CG |GUGAAGAGA CAUGAGAGGU 7021 GUAGAAUAAG UGGGAGGCCc c--------- --<------- ---cggcgcc c-ccccguuc 7081 (--cccgc-- )gaggggu-c ggggcggggu ccg-c-cggc cucgc-->(- -----)---- 7141 ------gGGC C-GCCGGUGA AA-UACCACU |ACUCUCAU- -CGUUU-UUU CACUGAc--- 7201 ------(--- --)------| --g GACAG-UGCC A-GGUG-GGG AG-UUUGACU G(GGG)CGGU 7561 A-C|ACCUGU (CAAACGGUA AC-)GCAG-G U|G|U|CCU- AAGGC-GAGC |UCAGG-GAG 7621 -G(ACA---- GAAA)CCUCC CGUGGA|GC( A|G--AAGG) GCAAAAG-CU C-GCUUGAUC 7681 -UUGAUUU(u c--aguac-- )GAAUACAGA CCGU(-GAAA )GCGGGG|CC --UCA|CGA- 7741 UCCUUCUG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -acC-UUU(- -UGGG-U--U U---)----- ---------- 7861 -----UAA|G CAGGAG-gug uC|aGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCGGCCAAGC G(UUCAU)AG CGACGUCGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GA-)AUUCA CCAA-GCGU| UGGAU(UGUU C)ACCCACUA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-u<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->-guGU UG-UU-GC-C AUGGUAAUCC UGCU(CAGUA 8281 C(GAGA)GGA AC-)CGCAGG U|UCAGACAU UUGGUGUAUG UGC|-UUGGC U(GAGG)AGC 8341 CAAUGGGGCG a-AGCUACC- AU-CUGU--G GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCC--g CCCA-----g -GCGgaACGA U --|------( ---)------ 8701 -----aaacc |auucg(-ua gacga)cc-u gcuuc----u ggg|ucgggg uuucguacgu 8761 ag-cagagca gc----(ucc -cuc------ ---------- ---------- ---------- 8821 ----)----g cugcgauc-u au-|ugaaag u|cag--ccc u--cga-cac aa--ggg-uu 8881 ugu--|---- ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (15)-Amphi 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS X.borealis 9262 bp RNA RNA 11-JAN-191 DEFINITION Xenopus borealis. ACCESSION No information KEYWORDS No information. SOURCE Xenopus borealis. ORGANISM Xenopus borealis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X59733 ID XB28SRRNA standard; RNA; VRT; 7618 BP. XX AC X59733; XX DT 19-NOV-1991 (Rel. 29, Last updated, Version 1) DT 19-NOV-1991 (Rel. 29, Created) XX DE X.borealis 28S ribosomal RNA gene for 28S rRNA XX KW 18S ribosomal RNA; 28S ribosomal RNA gene; 40S ribosomal subunit; KW 5.8S ribosomal DNA; ribosomal RNA transcription unit. XX OS Xenopus borealis (clawed frog) OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Amphibia; OC Lissamphibia; Anura; Archeobatrachia; Pipoidea; Pipidae. XX RN [1] RP 1-7634 RA Heeney P.A.; RT ; RL Submitted (27-MAY-1991) on tape to the EMBL Data Library by: RL P.A. Heeney, University Liverpool, Merseyside, Dept Biochemistry, RL Crown Street, L69 3BX Merseyside, UK XX RN [2] RA Ajuh P.M., Heeney P.A., Maden B.E.M., Edward H.; RT "Xenopus borealis and Xenopus laevis 28S ribosomal DNA and its RT complete 40S ribosomal precursor RNA coding units of both RT species"; RL Proc. R. Soc. Lond., B, Biol. Sci. 245:65-71(1991). XX CC *source: clone=pXbr101; XX FH Key Location/Qualifiers FH FT rRNA 1..162 FT /product="5.8S" FT misc_feature 1..336 FT /note="internal transcribed spacer 2" FT misc_feature 1..554 FT /note="internal transcribed spacer 1" FT misc_feature 1..612 FT /note="external transcribed spacer" FT rRNA 1..1826 FT /product="18S" FT rRNA 1..4128 FT /product="28S" /gene="28S RNA" XX SQ Sequence 7618 BP; 1414 A; 2397 C; 2584 G; 1223 T; 0 other; BASE COUNT 797 a 1290 c 1500 g 699 t 4976 others ORIGIN 1 |--------- ---------- ---------- ----CGACUC UUAGCGGUGG AUC|ACUCGG 61 |CUCGUGC|G U|-CGAUGAA GAA|CGCA(- -GCUA-GC)U |GC-GAGAAU UA-gugu|[- 121 gaauugcagg acacauugau ---------- ---------- ---------- -------]-- 181 ---------- ---------- ---caucg|A CACUUC-GAA Cgc-(accuu )-g-c|ggcc 241 ccg------g g(-------- ---------- ---------- -----uucc- u--)cc---- 301 --cg-gggcu ---acgccug -u-cu-gagg gucg--(--- ---cuc---/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --------uc )--agaccuc agaucaga-c gUG----GCG 481 AC|CCGCUGA -A--UU|UA( AGCA)UA-UU ACUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-C)AG-G AU|UCCCCCA GU---AAC(G GCGA)GUG-A A-----GAGG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -----gcgcc g--aauccc- 781 cgcccg(ccc gg-)cgggcg c--gggaaau guggcguac- gggagaccgg acccc---cc 841 cggcgcgg-- ---------- ---------- ---------- ---------- cuc----ggg 901 ggcc-caa-- --g-ucc-u( u-(cugauc- )g)agg-c-- ---------- -cc---agCC 961 --|C(GCG)G |ACGG-(UGU UAGG)-CCGG UG|---gcgg cccccggc-g c-----ggcg 1021 g--------- gacccggu-c uccucg---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GUU(----UG 1141 UGAA)UGCAG CCCAAA---- GCGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAACUC-- ---------- ---------- ---------- )CAU-CUAAG GCU----AAA 1381 UA-------- ---------- CCGGC-ACGA GACCGAUAGC GGAC-AAGUA CC(GUAA)G- 1441 G-GAAAGUUG -AAA-AGAAC UUU(ga-ag- )AGAG-AGUU C-AAGAGGGC G-UGAAAC-C 1501 GUUAA-GAG< gu---aaacg gguggggucc gugcgguc-c gcccggagga uucaacccgg 1561 cgggucagcg ccggccggac cgggccacuc ggcggacccc -cccgccgg- ---cccccuc 1621 cccucgccgg gagggcgguc gcg------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------c gg-gggggac -g-cggcccg ggcgg-cccc 1801 ggcgcccgca gggcgcauuu ccuccgc--- ggcggug-cg ccgcgac-cg gcuccggguc 1861 ggcugggaag gcccaggggu ucaggggaag guggccg--- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -gccgccccc 2041 gcgcggccgg cguuac--ag ccccccccca ggc-agc-ag cacucgccgu cacccggggc 2101 cgagggagac gaccgccucc gcggccuuc- ---------- ---------- --------cu 2161 ccccggaacc gucccguccc gcuccccccc gggggggcgg gccgcggggc ggggaagggg 2221 gacggggccc cccgcucccg gcgcggcugu caac------ ---------- ---------- 2281 ---------- ---------- ---------- ---------- ----cggggc ggacugcccc 2341 cagugcgccc cauccg-cg- ccgcgccgcc gaggc--ggg agg------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -gcccgcggg agccgccagg g-guccgcgg 2521 cg-------- ---------- aug-ucggug u-cccacccg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACGCGCGC GCGAGUCg-g aggga----( cucug-cgcg 2641 aa)------- ---------- ---a-ccc-- ---------- ug-uGGCGCA AU(GAAG)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 -gggccggg- -(gcgc---- --)--cccgg cu-----gag gugggau-cc cgccgcccuc 2941 c--------- ---------- ---------- ---------- ---------- ---------u 3001 cc-------( -ccag----- ----)---gg gggaggu--- -cacggcggg cgcaccaccg 3061 gcccgucucg ------cccg -------(-c uccgu-)--- ---------- ---------- 3121 -cggg--gag gugg------ --------ag c]-------- ---------G UGAGCGCGC- 3181 -GCG-AUAGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- GG|C-AGGGC GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGU CCG-UA---G CG-GUCCUGA (CGUGCAAA) 3301 UCG-G-UCGU CCGACCUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGC -Gcuc--|-- -|-guccgu- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------c 3661 gcaguUUUAU -C|CGG--UA AA-GCGAAUG AUUAGAGGU- -----cUUGG GGCC--(gaa 3721 a-c)--GAUC U-CAA-|CCU AUUC-UCAAA CUUUA-AAUG |GGUAAGaag -cccggcuc( 3781 gcuggcuug) gagccggg-c gugg------ ---------- ---------- ---------- 3841 ---------- ---------- ---aaugcga g|ca-CGCCU -AGU-GGGCC -ACU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G CUGCGG(GA- UGAA)CCG-- AACGCCG--- GGUUAAG--G 3961 C|GCCC-gau g-CC-GA-CG CUCAU-ca-- --------ga ccccag---- -AAAAGGUGU 4021 U--GGUUGAU AUAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- GGAGCGUCG| G|-------- --GCCCAU-- --ACCCGGC| (- -----)-gcc gcgac-gAGU AGGA------ 4441 --GGG|-CCg CC-GC-GG-- --------u- -gcg-cgc-- g------GAA GCCC-----C 4501 G-GGC(GAGG -)GCCCGGG- UGG|A-GCC| G--CCGCGG- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- C(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GGCCGAAGU G-GAG|AAGG GUU|CCAUGU GA-ACA(-GC AGU)UG|AAC 4681 AUGGGUCAGU |-CGG-uCCU AAGA------ -(----)--- 4921 ----UC-GAA AGGGA-GU-C GGG(UUCAGA UC-)CCCGA| -AC----ccg ga-guggcgg 4981 ag[acgggc- -----gcccg cggccccccc ca-----c-- -c---gcc(- -ucccc-)gg 5041 cg--gugggg gggcgggggc gu----ccag ugc-g(gcaa -)cgcga-c] cga-ucccgg 5101 agaa-----g ccg--gcggg ag-c-cccg- -GG-GAGA(G UUCUCUUU-) UCUUUG-|UG 5161 A-agggca-- ---------- ggg|c-cgcC CUGG--AAUG ----GG(UUC GC-)CCCGA- 5221 GA-GA-GGG- gcccg----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----cgcc-u uGG-----AA 5341 AGCGUCGCG( -guucc--)G GCGGCGUC-c ggugag---c -ucucg--cu ggcC-CUUGA 5401 AAA-uccggg -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggagaggg-- ---------- --uguaaauc --uc-gcg-- cc-gggCCGU 5581 A|CC--CAUA UCC(GCAGCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| GGCAU-||gu 5641 UA-G--AACA AU-GUAG-GU A-AGGGAAGU CGGCAA-GUC -AGAUCCGUA AC(UUCG)GG 5701 AUAAGGAUU| GGCUCUAAG- ---------- -(-----)---- -------CUU AGAACU|G(- --GUG)CGGA 6601 CCAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU CGCG|A--AG G|CCC(---G 6661 AGGC)GGG-- ---------- --U-GUUGAC GCGAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----UGAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUGAA CGAGAUUCCC ACUGU-CCCU ACCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCU G---CAA-CU |GUGAAGAGA CAUGAGAGGU 7021 GUAGGAUAAG UGGGAGGCCC c--------- --<------- ---c------ -------gcg 7081 (--cucgc-- )cgcaaag-- ---------- ---------- ------->(- -----)---- 7141 ----gggcGC C-GCCGGUGA AA-UACCACU |ACUCUUAU- -CGUUU-UUU CACUUAc--- 7201 ------(--- --)------| --g GACAG-UGGC A-GGUG-GGG AG-UUUGACU G(GGG)CGGU 7561 A-C|ACCUGU (CAAACCGUA AC-)GCAG-G U|G|U|CCU- AAGGC-GAGC |UCAGG-GAG 7621 -G(ACA---- GAAA)CCUCC CGUGGA|GC( A|G--AAGG) GCAAAAG-CU C-GCUUGAUC 7681 -UUGAUUU(u c--aguau-- )GAAUAcAGA CCGU(-GAAA )GCGGGG|CC --UCA|CGA- 7741 UCCUUCUG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -acU-UUU(- -UGGG-U--U U---)----- ---------- 7861 -----UAA|G CAGGAG-gug uC|aGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCGGCCAAGC G(UUCAU)AG CGACGUCGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GA-)AUUCA CCAA-GCGU| UGGAU(UGUU C)ACCCACUA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-u<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->-guGU UG-UC-GC-A AUAGUAAUCC UGCU(CAGUA 8281 C(GAGA)GGA AC-)CGCAGG U|UCAGACAU UUGGUGUAUG UGC|-UUGGC U(GAGG)AGC 8341 CAAUGGGGCG A-AGCUACC- AU-CUGU--G GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCC-c CCUA--a--a cGUG--ACGA U --|------( ---)------ 8701 -----aaauc |auucg(-ua gacga)cc-u gauuc----u ggg|ucaggg uuucgugcgu 8761 ag-cagagca gc----(uac -cuc------ ---------- ---------- ---------- 8821 ----)----g cugcgauc-u au-|ugaaag u|cau--ccc u--uga-gcc aa--gcu-uu 8881 uguc-|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS X.laevis.1 9262 bp RNA RNA 30-JAN-1980 DEFINITION Xenopus laevis 5.8S and 28S. ACCESSION No information KEYWORDS No information. SOURCE Xenopus laevis 5.8S and 28S. ORGANISM Xenopus laevis 5.8S and 28S. REFERENCE 1 (bases 1 to 1439) AUTHORS No information JOURNAL 199(1978),28S Gerbi et.al.NAR 11:7795-7817(1983) STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 9262) Corresponding GenBank entry: X59734 Phylo:Eukaryotes,Animal,Amphibian BASE COUNT 782 a 1273 c 1490 g 695 t 5022 others ORIGIN 1 |--------- ---------- ---------- ----CGACUC UUAGCGGUGG AUC|ACUCGG 61 |CUCGUGC|G U|-CGAUGAA GAA|CGCA(g cGCUA-GC)U |GC-GAGAAU UA-gugu|[- 121 gaauugcagg acacauugau ---------- ---------- ---------- -------]-- 181 ---------- ---------- ---caucg|A CACUUC-GAA Cgc-(acuu- )-c-c|ggcc 241 ccg------g g(-------- ---------- ---------- -----uucc- u--)cc---- 301 --cg-gggcc ---acgccug -u-cu-gagg gucg--(--- ---cuc---/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --------uc )--agaccuc agaucaga-c gCG----GCG 481 AC|CCGCUGA -A--UU|UA( AGCA)UA-UU ACUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-C)AG-G AU|UCCCCCA GU---AAC(G GCGA)GUG-A A-----GAGG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -----gcgcc g--aaucccg 781 cgccc-(gcc ---)-gggcg c--gggacgu guggcguac- gggagaccgg acccc---cc 841 cggcgcgg-- ---------- ---------- ---------- ---------- cuc----ggg 901 ggcc-caa-- --g-ucc-u( u-(cugauc- )g)agg-c-- ---------- -cc---agCC 961 --|C(GCG)G |ACGG-(UGU UAGG)-CCGG UG|--ggcgg cccccggc-g c-----ggcg 1021 g--------- gacccggu-c uccucg---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GUU(----UG 1141 GGAA)UGCAG CCCAAA---- GCGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAACUC-- ---------- ---------- ---------- )CAU-CUAAG GCU----AAA 1381 UA-------- ---------- CCGGC-ACGA GACCGAUAGC GGAC-AAGUA CC(GUAA)G- 1441 G--AAAGUUG -AAA-AGAAC UUU(ga-ag- )AGAG-AGUU C-AAGAGGGC G-UGAAAC-C 1501 GUUAA-GAG< gu---aaacg ggugggg-cc gugcgguc-c gcccggagga uucaacccgg 1561 cgggucagcg ccgccgggac cgggccacuc ggcggacccc -cccgccgg- ---cccccuc 1621 cccucgccgg gagggcgguc gcg------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------c gg-gggggac -g-cggcccg ggcg--nccc 1801 ggcgccnn-- nngcgn-uuu ccuccgc--- ggcggug-cg -cgcg-c-cg gcuccgggcc 1861 gcgugggaag gcccaggggu ucaggggaag guggccg--- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -----gccgc 2041 ccccgcgcgc ggcuac--ag ccccccccca ngc-agc-ag cacucgccgu cgcccggggc 2101 cgagggagac gccggccucc gcgguccucc uccccggagc g--------- ---------- 2161 ---------- -cgucccgcc gcuccccccc gggggggcgg cgcgcggggc ggggaagggg 2221 gaaggggccc cccgcucccg gcgcggcugu caac------ ---------- ---------- 2281 ---------- ---------- ---------- ---------- ----cggggc ggacugcccc 2341 cagugcgccc cguccg-cg- ccgcgccgcc gaggc--ggg agg------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -gccgccggg agccgccrag g-guccgcgg 2521 cg-------- ---------- aug-ucggug u-cccacccg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACGCGCGC GCGAGUCg-g aggga----( cucug-cgcg 2641 aa)------- ---------- ---a-ccc-- ---------- ug-uGGCGCA AU(GAAG)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 -gggccggg- -(gcgc---- --)--cccgg cu-----gag gugggau-cc cgccgccccu 2941 c--------- ---------- ---------- ---------- ---------- ---------c 3001 cuccgcccc( cccg------ ----)ggggc gggggggggg cgccggcggg cncaccaccg 3061 gcccgucucg ------cccg -------(-c cccgu-)--- ---------- ---------- 3121 -cggg--grg gugg------ --------ng c]-------- ---------G UGAGCGCGC- 3181 -GCGaUUAGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- GG|C-AGNGC GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGU CCG-UA---G CG-GUCCUGA (CGUGCAAA) 3301 UCG-G-UCGU CCGACCUNGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGC -Gcun--|-- -|-guccgu- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------c 3661 gcaguUUUAU -C|CGG--UA AA-GCGAAUG AUUAGAGGU- -----cUUGG GGCC--(gaa 3721 auc)--GAUC U-CAA-|CCU AUUC-UCAAA CUUUA-AAUG |GGUAAGaag -cccggcuc( 3781 gcuggcuug) gagccggggc gugg------ ---------- ---------- ---------- 3841 ---------- ---------- --aaugcgnn g|ca-CGCCA uAGU-GGGCC -ACU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G CUGCGG(GA- UGAA)CCG-- AACGCCG--- GGUUAAG--G 3961 C|GCCC-gau g-CC-GA-CG CUCAU-ca-- --------ga ccccag---- -AAAAGGUGU 4021 U--GGUUGAU AUAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- GGAGCGUCG| G|-------- --GCCCAU-- --ACCCGGC| (- -----)-gcc gcgacugAGU AGGA------ 4441 --GGG|-CC- CCgGC-GG-- --------u- -ggG-CGc-- g------GAA GCGC------ 4501 G-CGC(GAGG -)GCCCGGG- UGG|A-GCC| G--CCGCGG- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- C(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GGCCGAAGU G-GAG|AAGG GUU|CCAUGU GA-ACA(-GC AGU)UG|AAC 4681 AUGGGUCAGU |-CGG-uCCU AAGA------ -(----)--- 4921 ----UC-GAA AGGGA-GU-C GGG(UUCAGA UC-)CCCGA| -AC----ccg ga-guggcgg 4981 ag[acgggc- -----gcccg cggccccccc cg-----a-- -c---gcc(- -ucgc--)gg 5041 cg--gcgggg gggcgggggc gu----ccag ugc-g(gcga -)cgcga-c] cga-ucccgg 5101 agaa-----g ccg-ngnggg ag-n-cccgg gaG-AAGA(G UUCUCUUU-) UCUUUG-|UG 5161 A-agggca-- ---------- ggg|c-cgcC CUNG--AAUG ----GG(UUC GC-)CCCGA- 5221 GA-GA-GGG- gcccg----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----cgccgu uGG-----AA 5341 AGCGUCGCG( -guucc--)G GCGGCGUC-c ggugag---c uucucg--cu ggcC-CUUGA 5401 AAA-uccggg -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggagaggg-- ---------- --uguaaauc --ucugcg-- cc-gggCCGU 5581 A|CC--CAUA UCC(GCAGCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| GGCAU-||gu 5641 UA-G--AACA AU-GUAG-GU A-AGGGAAGU CGGCAA-GUC -AGAUCCGUA AC(UUCG)GG 5701 AUAAGGAUU| GGCUCUAAG- ---------- -(-----)---- -------CUU AGAACU|G(- --GUG)CGGA 6601 CNANGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU CGCG|A--AG G|CCC(---g 6661 aggc)GGG-- ---------- --U-GUUGAC GCGAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----UGAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUGAA CGAGAUUCCC ACUGU-CCCU ACCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCG -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCU G---CAA-CU |GUGAAGAGA CAUGAGAGGU 7021 GUAGGAUAAG UGGGAGGCCc c--------- --<------- ---c------ -------gcg 7081 (--cucgu-- )cgcaaag-- ---------- ---------- ------->(- -----)---- 7141 ----gggcGC C-GCCGGUGA AA-UACCACU |ACUCUUAU- -CGUUU-UUU CACUUAc--- 7201 ------(--- --)------| --g GACAG-UGGC A-GGUG-GGG AG-UUUGACU G(GGG)CGGU 7561 A-C|ACCUGU (CAAACCGUA AC-)GCAG-G U|G|U|CCU- AAGGC-GAGC |UCAGG-GAG 7621 -G(ACA---- GAAA)CCUCC CGUGGA|GC( A|G--AAGG) GCAAAAG-CU C-GCUUGAUC 7681 -UUGAUUU(u c--aguau-- )GAAUACAGA CCGU(-GAAA )GCGGGG|CC --UCA|CGA- 7741 UCCUUCUG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -acU-UUU(- -UGGG-U--U U---)----- ---------- 7861 -----UAA|G CAGGAG-gug uC|aGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCGGCCAAGC G(UUCAU)AG CGACGUCGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GA-)AUUCA CCAA-GCGU| UGGAU(UGUU C)ACCCACUA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-u<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->-guGU UG-UC-GC-A AUAGUAAUCC UGCU(CAGUA 8281 C(GAGA)GGA AC-)CGCAGG U|UCAGACAU UUGGUGUAUG UGC|-UUGGC U(GAGG)AGC 8341 CAAUGGGGCG A-AGCUACC- AU-CUGU--G GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCC-c CCUA--a--a cGUG--ACGA U --|------( ---)------ 8701 -----aaauc |auucg(-ua gacga)cc-u gauuc----u ggg|ucaggg uuucgugcgu 8761 ag-cagagca gc----(uac -cuc------ ---------- ---------- ---------- 8821 ----)----g cugcgauc-u au-|ugaaag u|cau--ccc u--ugg-c-c aa--gc---- 8881 -----|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS X.laevis.2 9262 bp RNA RNA 11-JAN-191 DEFINITION Xenopus laevis. ACCESSION No information KEYWORDS No information. SOURCE Xenopus laevis. ORGANISM Xenopus laevis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X59734 ID XL28SR standard; RNA; VRT; 7634 BP. XX AC X59734; XX DT 19-NOV-1991 (Rel. 29, Last updated, Version 2) DT 19-NOV-1991 (Rel. 29, Created) XX DE X.laevis 28S ribosomal RNA gene for 28S rRNA XX KW 18S ribosomal RNA; 28S ribosomal RNA gene; 40S ribosomal subunit; KW 5.8S ribosomal DNA; ribosomal RNA transcription unit. XX OS Xenopus laevis (clawed frog) OC Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Amphibia; OC Lissamphibia; Anura; Archeobatrachia; Pipoidea; Pipidae. XX RN [1] RA Ajuh P.M., Heeney P.A., Maden B.E.M., Edward H.; RT "Xenopus borealis and Xenopus laevis 28S ribosomal DNA and its RT complete 40S ribosomal precursor RNA coding units of both RT species"; RL Proc. R. Soc. Lond., B, Biol. Sci. 245:65-71(1991). XX CC *source: clone=pXlr101A; XX FH Key Location/Qualifiers FH FT rRNA 1..162 FT /product="5.8S" FT misc_feature 1..262 FT /note="internal transcribed spacer 2" FT misc_feature 1..557 FT /note="internal transcribed spacer 1" FT misc_feature 1..712 FT /note="external transcribed spacer" FT rRNA 1..1826 FT /product="18S" FT rRNA 1..4115 FT /product="28S" /gene="28S RNA" XX SQ Sequence 7634 BP; 1379 A; 2461 C; 2610 G; 1184 T; 0 other; BASE COUNT 788 a 1288 c 1506 g 691 t 4989 others ORIGIN 1 |--------- ---------- ---------- ----CGACUC UUAGCGGUGG AUC|ACUCGG 61 |CUCGUGC|G U|-CGAUGAA GAA|CGCA(- -GCUA-GC)U |GC-GAGAAU UA-gugu|[- 121 gaauugcagg acacauugau ---------- ---------- ---------- -------]-- 181 ---------- ---------- ---caucg|A CACUUC-GAA Cgc-(accuu )-g-c|ggcc 241 ccg------g g(-------- ---------- ---------- -----uucc- u--)cc---- 301 --cg-gggcc ---acgccug -u-cu-gagg gucg--(--- ---cuc---/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --------uc )--agaccuc agaucaga-c gCG----GCG 481 AC|CCGCUGA -A--UU|UA( AGCA)UA-UU ACUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-C)AG-G AU|UCCCCCA GU---AAC(G GCGA)GUG-A A-----GAGG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -----gcgcc g--aauccc- 781 cgcccg(ccc gg-)cgggcg c--gggacgu guggcguac- gggagaccgg acccc---cc 841 cggcgcgg-- ---------- ---------- ---------- ---------- cuc----ggg 901 ggcc-caa-- --g-ucc-u( u-(cugauc- )g)agg-c-- ---------- -cc---agCC 961 --|C(GCG)G |ACGG-(UGU UAGG)-CCGG UG|---gcgg cccccggc-g c-----ggcg 1021 g--------- gacccggu-c uccucg---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GUU(----UG 1141 GGAA)UGCAG CCCAAA---- GCGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAACUC-- ---------- ---------- ---------- )CAU-CUAAG GCU----AAA 1381 UA-------- ---------- CCGGC-ACGA GACCGAUAGC GGAC-AAGUA CC(GUAA)G- 1441 G-GAAAGUUG -AAA-AGAAC UUU(ga-ag- )AGAG-AGUU C-AAGAGGGC G-UGAAAC-C 1501 GUUAA-GAG< gu---aaacg gguggggucc gugcgguc-c gcccggagga uucaacccgg 1561 cgggucagcg ccggccggac cgggccacuc ggcggacccc -cccgccgg- ---cccccuc 1621 cccucgccgg gagggcgguc gcg------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------c gg-gggggac -g-cggcccg ggcgg-cccc 1801 ggcgcccgca gggcgcauuu ccuccgc--- ggcggug-cg ccgcgac-cg gcuccgggcc 1861 ggcugggaag gcccaggggu ucaggggaag guggccg--- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- -gccgccccc 2041 gcgcggccgg cguuac--ag ccccccccca ggc-agc-ag cacucgccgu cgcccggggc 2101 cgagggagac gaccgccucc gcggccucc- ---------- ---------- ---------u 2161 ccccggaacc gucccguccc gcuccccccc gggggggcgg gccgcggggc ggggaagggg 2221 gaaggggccc cccgcucccg gcgcggcugu caac------ ---------- ---------- 2281 ---------- ---------- ---------- ---------- ----cggggc ggacugcccc 2341 cagugcgccc cguccg-cg- ccgcgccgcc gaggc--ggg agg------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- -gcccgcggg agccgccagg g-guccgcgg 2521 cg-------- ---------- aug-ucggug u-cccacccg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACGCGCGC GCGAGUCG-g aggga----( cucug-cgcg 2641 aa)------- ---------- ---a-ccc-- ---------- ug-uGGCGCA AU(GAAG)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 -gggccggg- -(gcgc---- --)--cccgg cu-----gag gugggau-cc cgccgccccu 2941 c--------- ---------- ---------- ---------- ---------- ---------c 3001 cuccgcccc( cccg------ ----)ggggc gggggggggc -gccggcggg cgcaccaccg 3061 gcccgucucg ------cccg -------(-c cccgu-)--- ---------- ---------- 3121 -cggg--gag gugg------ --------ag c]-------- ---------G UGAGCGCGC- 3181 -GCG-AUAGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- GG|C-AGGGC GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGU CCG-UA---G CG-GUCCUGA (CGUGCAAA) 3301 UCG-G-UCGU CCGACCUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGC -Gcuc--|-- -|-guccgu- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------c 3661 gcagUUUUAU -C|CGG--UA AA-GCGAAUG AUUAGAGGU- -----cUUGG GGCC--(gaa 3721 a-c)--GAUC U-CAA-|CCU AUUC-UCAAA CUUUA-AAUG |GGUAAGaag -cccggcuc( 3781 gcuggcuug) gagccggg-c gugg------ ---------- ---------- ---------- 3841 ---------- ---------- ---aaugcga g|ca-CGCCU -AGU-GGGCC -ACU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G CUGCGG(GA- UGAA)CCG-- AACGCCG--- GGUUAAG--G 3961 C|GCCC-gau g-CC-GA-CG CUCAU-ca-- --------ga ccccag---- -AAAAGGUGU 4021 U--GGUUGAU AUAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- GGAGCGUCG| G|-------- --GCCCAU-- --ACCCGGC| (- -----)-gcc gcgac-gAGU AGGA------ 4441 --GGG|-CCg CC-GC-GG-- --------u- -ggg-cgc-- g------GAA GCCC-----C 4501 G-GGC(GAGG -)GCCCGGG- UGG|A-GCC| G--CCGCGG- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- C(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GGCCGAAGU G-GAG|AAGG GUU|CCAUGU GA-ACA(-GC AGU)UG|AAC 4681 AUGGGUCAGU |-CGG-UCCU AAGA------ -(----)--- 4921 ----UC-GAA AGGGA-GU-C GGG(UUCAGA UC-)CCCGA| -AC----ccg ga-guggcgg 4981 ag[acgggc- -----gcccg cggccccccc cg-----a-- -c---gcc(- -ucgc--)gg 5041 cg--gcgggg gggcgggggc gu----ccag ugc-g(gcga -)cgcga-c] cga-ucccgg 5101 agaa-----g ccg--gcggg ag-c-cccg- -GG-GAGA(G UUCUCUUU-) UCUUUG-|UG 5161 A-agggca-- ---------- ggg|c-cgcC CUGG--AAUG ----GG(UUC GC-)CCCGA- 5221 GA-GA-GGG- gcccg----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----cgcc-u uGG-----AA 5341 AGCGUCGCG( -guucc--)G GCGGCGUC-c ggugag---c -ucucg--cu ggcC-CUUGA 5401 AAA-uccggg -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggagaggg-- ---------- --uguaaauc --uc-gcg-- cc-gggCCGU 5581 A|CC--CAUA UCC(GCAGCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| GGCAU-||gu 5641 UA-G--AACA AU-GUAG-GU A-AGGGAAGU CGGCAA-GUC -AGAUCCGUA AC(UUCG)GG 5701 AUAAGGAUU| GGCUCUAAG- ---------- -(-----)---- -------CUU AGAACU|G(- --GUG)CGGA 6601 CCAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU CGCG|A--AG G|CCC(---G 6661 AGGC)GGG-- ---------- --U-GUUGAC GCGAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----UGAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUGAA CGAGAUUCCC ACUGU-CCCU ACCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCG -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCU G---CAA-CU |GUGAAGAGA CAUGAGAGGU 7021 GUAGGAUAAG UGGGAGGCCC c--------- --<------- ---c------ -------gcg 7081 (--cucgu-- )cgcaaag-- ---------- ---------- ------->(- -----)---- 7141 ----gggcGC C-GCCGGUGA AA-UACCACU |ACUCUUAU- -CGUUU-UUU CACUUAc--- 7201 ------(--- --)------| --g GACAG-UGGC A-GGUG-GGG AG-UUUGACU G(GGG)CGGU 7561 A-C|ACCUGU (CAAACCGUA AC-)GCAG-G U|G|U|CCU- AAGGC-GAGC |UCAGG-GAG 7621 -G(ACA---- GAAA)CCUCC CGUGGA|GC( A|G--AAGG) GCAAAAG-CU C-GCUUGAUC 7681 -UUGAUUU(u c--aguau-- )GAAUACAGA CCGU(-GAAA )GCGGGG|CC --UCA|CGA- 7741 UCCUUCUG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -acU-UUU(- -UGGG-U--U U---)----- ---------- 7861 -----UAA|G CAGGAG-gug uC|aGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCGGCCAAGC G(UUCAU)AG CGACGUCGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GA-)AUUCA CCAA-GCGU| UGGAU(UGUU C)ACCCACUA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-u<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->-guGU UG-UC-GC-A AUAGUAAUCC UGCU(CAGUA 8281 C(GAGA)GGA AC-)CGCAGG U|UCAGACAU UUGGUGUAUG UGC|-UUGGC U(GAGG)AGC 8341 CAAUGGGGCG A-AGCUACC- AU-CUGU--G GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCC-c CCUA--a--a cGUG--ACGA U --|------( ---)------ 8701 -----aaauc |auucg(-ua gacga)cc-u gauuc----u ggg|ucaggg uuucgugcgu 8761 ag-cagagca gc----(uac -cuc------ ---------- ---------- ---------- 8821 ----)----g cugcgauc-u au-|ugaaag u|cau--ccc u--uga-gcc aa--gcu-uu 8881 uguc-|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (9)-Echino 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... .......... .......... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .......... 2881 .......... .......... .......... .......... .......... .......... 2941 .......... .......... .......... .......... .......... .......... 3001 .......... .......... .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .......... .......... 3181 .......... .......... .......... .......... .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .......... .......... .......... 3361 .......... .......... .......... .......... .......... .......... 3421 .......... .......... .......... .......... .......... .......... 3481 .......... .......... .......... .......... .......... .......... 3541 .......... .......... .......... .......... .......... .......... 3601 .......... .......... .......... .......... .......... .......... 3661 .......... .......... .......... .......... .......... .......... 3721 .......... .......... .......... .......... .......... .......... 3781 .......... .......... .......... .......... .......... .......... 3841 .......... .......... .......... .......... .......... .......... 3901 .......... .......... .......... .......... .......... .......... 3961 .......... .......... .......... .......... .......... .......... 4021 .......... .......... .......... .......... .......... .......... 4081 .......... .......|.. .......... .......... .......... .......... 4141 .......... .......... .......... .......... .......... .......... 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .......... .......... .......... .......... 4441 .......... .......... .......... .......... .......... .......... 4501 .......... .......... .......... .......... .......... .......... 4561 .......... .......... .......... .......... .......... .......... 4621 .......... .......... .......... .......... .......... .......... 4681 .......... .......... .......... .......... .......... .......... 4741 .......... .......... .......... .......... .......... .......... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... .......... .......... .......... .......... .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... .......... .......... 5581 .......... .......... .......... .......... .......... .......... 5641 .......... .......... .......... .......... .......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... .......... .......... 5821 .......... .......... .......... .......... .......... .......... 5881 .......... .......... .......... .......... .......... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... .......... .......... .......... .......... 6541 .......... .......... .......... .......... .......... .......... 6601 .......... .......... .......... .......... .......... .......... 6661 .......... .......... .......... .......... .......... .......... 6721 .......... .......... .......... .......... .......... .......... 6781 .......... .......... .......... .......... .......... .......... 6841 .......... .......... .......... .......... .......... .......... 6901 .......... .......... .......... .......... .......... .......... 6961 .......... .......... .......... .......... .......... .......... 7021 .......... .......... .......... .......... .......... .......... 7081 .......... .......... .......... .......... .......... .......... 7141 .......... .......... .......... .......... .......... .......... 7201 .......... .......... .......... .......... .......... .......... 7261 .......... .......... .......... .......... .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... .......... .......... .......... 7561 .......... .......... .......... .......... .......... .......... 7621 .......... .......... .......... .......... .......... .......... 7681 .......... .......... .......... .......... .......... .......... 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .......... .......... .......... .......... 7861 .......... .......... .......... .......... .......... .......... 7921 .......... .......... .......... .......... .......... .......... 7981 .......... .......... .......... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... .......... .......... .......... 8281 .......... .......... .......... .......... .......... .......... 8341 .......... .......... .......... .......... .......... .......... 8401 .......... .......... .......... .......... .......... .......... 8461 .......... .......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... .......... .......... .......... .......... .......... 8701 .......... .......... .......... .......... .......... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... .......... .......... .......... .......... 8881 .......... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS A.ijimai 9262 bp RNA RNA 11-JAN-191 DEFINITION Araeosoma ijimai. ACCESSION No information KEYWORDS No information. SOURCE Araeosoma ijimai. ORGANISM Araeosoma ijimai. REFERENCE 1 (bases 1 to 1439) AUTHORS Littlewood,D.T. and Smith,A.B. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: Z37116 LOCUS AI28SRRNA 1128 bp DNA INV 09-FEB-1995 DEFINITION A.ijimai gene for 28S (large subunit) ribosomal RNA. ACCESSION Z37116 KEYWORDS 28S ribosomal RNA. SOURCE Araeosoma ijimai. ORGANISM Araeosoma ijimai Eukaryota; Animalia; Eumetazoa; Echinodermata; Echinozoa; Echinoidea; Echinothurioida. REFERENCE 1 (bases 1 to 1128) AUTHORS Littlewood,D.T. and Smith,A.B. TITLE A combined morphological and molecular phylogeny for sea urchins (Echinoidea: Echinodermata) JOURNAL Proc. R. Soc. Lond., B, Biol. Sci. 347, 213-234 (1995) REFERENCE 2 (bases 1 to 1128) AUTHORS Littlewood,D.T. TITLE Direct Submission JOURNAL Submitted (09-SEP-1994) to the EMBL/GenBank/DDBJ databases. David T.J. Littlewood, Palaeontology, The Natural History Museum, Cromwell Road, London, SW7 5BD, United Kingdom COMMENT NCBI gi: 665596 FEATURES Location/Qualifiers source 1..1128 /organism="Araeosoma ijimai" /dev_stage="Adult" /cell_type="Sperm" /sex="Male" rRNA 1..1128 /note="partial sequence only; 5'end; PCR primer sequences are not shown; only first 338 bases from 5'end used in publication" /product="28S (large subunit) ribosomal RNA" BASE COUNT 241 a 320 c 374 g 183 t 10 others ORIGIN BASE COUNT 241 a 320 c 374 g 183 t 8144 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~--~~|~~( ~~~~)ua-uc acuaag-c-g g------A-- --NNNNNCU( 541 AAC-A)AGGa gu|-cccuca gu---agc(g gcga)gug-a a-----gagg gaug------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -----ucgcu g--aauccc- 781 --a-gc(ccc g--)gcgg-- ---gcag-uu guggc----- ---gu-gagg cggcu---uc 841 uggcccgcga uuc------- ---------- ---------- ---------- ----u-ugcg 901 acgccga--- --g-guc-c( uc-uugauc- -g)gggca-- ----accuua --------cc 961 --|u(gua)g |cggg-(ugu cagg)-ccca uu|-cggnnn ccgggucucg ------agg- 1021 gccuguagcc gccgu----- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUA GUU(----UG 1141 GGAA)UGCUG CCCAAAgaaa agGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUGAACUC-- ---------- ---------- ---------- )CAU-CCAAG GCUuuuaAAA 1381 CA-------- ---------- CUGGCaACGA GACCGAUAGC AGAC-AAGUA CC(GUGA)-- 1441 G-GAAAGUUG -AAA-AGAAC UCU(GA-AG- )AGAG-AGUU C-AAGAGGAC G-UGAAAC-C 1501 GCUAA-GAA< gu---aaacg ggcaggacuc gcggcacg-g gcccgagaag auucagcgcg 1561 cuggucgugg ccacagcgcc cgcucugugg ggccgaucgc gggccacggu cggagcg--- 1621 ---------u gcacuu--cu cccgggcgcg gcgcucggga ccagcaugcc ucuucgucgg 1681 ccgaccgcuu ccgcgcaggu accucucacc acucgugggc guggagaacu aauggcgugg 1741 ugcucgcaac gccagaccga gcugcugagg agaggagcga gucgcgccug ccucauc-uc 1801 gassu-gcgc ccguccgccu uccgcag--- accuccccgu ggcacgcagu agccucgagg 1861 gcaagcggcc agagugu--- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- -------ucg ggucgacgug 2221 gugcuucggu cgccgagcga agcugggcg- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- --ccugcucg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACGGACCC GCAAGUCa-a gggg-----( agcgauccaa 2641 a-)------- ---------- -----cccc- ---------- --acGGCG-- c-(-aau)g- 2701 --[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --------aa gguauagguu ga(ccagg)u cggcc----- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ----gacgug ggauuccac- ---------- -------ccg ga-ga----a aca------- 3061 --cagaaggg gg---ggucg caccacggcc ccgccacguc cgcuccgcuu --------gg 3121 ug--u----- ---------- --gg-cggag g]-------- ---------c agagcggga- 3181 -acg-cuagG ACCCGAAAGA U-GGUG-AAC UAUG-CCCG- AG|C-AGGAU GAAGUCAGAG 3241 (GAAA----- -----)CUCU GAU-GGAGGU CCG-CA---G CG-AUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU CCGACUCGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCU~ ~~~~~~~~~~ --(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~-|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ---------~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~-~~~~~ ~~~~~~~~~~ ~~~~-~~~~( 3901 ~~~~~~)~~~ ~~~-~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~-- ~~~~~~~--~ 3961 ~|~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---- ~~~~~~~~~~ 4021 ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~-~~~ ~~~--~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~-~ 4201 ~~~~(~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~-- -~~~~~~~~~ ~~~~~~~~~~ ~----~-~~~ ~~~~---~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ -~~~~~~~~- ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(-~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~)~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~---- ---------- --------~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~- -----~~~~~ ~~~~~~~~~~ ~~-----~-- -~---~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~----~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~-~~~~~ ---~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ----~~~~~~ ~~~----~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~-~~~ ~|~~~(~--~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~-~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-->(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ -~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(- -~~~~~~~~~ ~~~-)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~-)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS A.owstoni 9262 bp RNA RNA 11-JAN-191 DEFINITION Asthenosoma owstoni. ACCESSION No information KEYWORDS No information. SOURCE Asthenosoma owstoni. ORGANISM Asthenosoma owstoni. REFERENCE 1 (bases 1 to 1439) AUTHORS Littlewood,D.T. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: Z37507 LOCUS AO28SRRNX 1120 bp DNA INV 09-FEB-1995 DEFINITION A.owstoni gene for 28S (large subunit) ribosomal RNA. ACCESSION Z37507 KEYWORDS 28S ribosomal RNA. SOURCE Asthenosoma owstoni. ORGANISM Asthenosoma owstoni Eukaryota; Animalia; Eumetazoa; Echinodermata; Echinozoa; Echinoidea; Echinothurioida. REFERENCE 1 (bases 1 to 1120) AUTHORS Littlewood,D.T. TITLE Direct Submission JOURNAL Submitted (19-SEP-1994) to the EMBL/GenBank/DDBJ databases. David T.J. Littlewood, Palaeontology, The Natural History Museum, Cromwell Road, London, SW7 5BD, United Kingdom REFERENCE 2 (bases 1 to 1120) AUTHORS Littlewood,D.T. and Smith,A.B. TITLE A combined morphological and molecular phylogeny for sea urchins (Echinoidea: Echinodermata) JOURNAL Proc. R. Soc. Lond., B, Biol. Sci. 347, 213-234 (1995) COMMENT NCBI gi: 665601 FEATURES Location/Qualifiers source 1..1120 /organism="Asthenosoma owstoni" /dev_stage="Adult" /cell_type="Sperm" /sex="Male" rRNA 1..1120 /note="partial sequence only; 5'end; PCR primer sequences are not shown; only first 338 bases from 5' end used in the publication" /product="28S (large subunit) ribosomal RNA" BASE COUNT 243 a 312 c 378 g 178 t 9 others ORIGIN BASE COUNT 243 a 312 c 378 g 178 t 8151 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~--~~|~~( ~~~~)ua-uc acUAAG-C-G G-AGGAAG-- --AGAAACU( 541 AAC-C)AGGa gu|-cccuca gu---agc(g gcga)gug-a a-----gagg gaua------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -----ucgcu g--aauccc- 781 --a-gc(ccc ---)g-c--c gg-gcag-uu guggc----- ---gu-gagg cggcu---uc 841 uggcccgcga uuc------- ---------- ---------- ---------- ----u-ugcg 901 acgccga--- --g-guc-c( uc-uugauc- -g)gggcc-- ----acuuua --------cc 961 --|u(gua)g |cggg-(ugu cagg)-ccca uu|-cgggcg acggaugucg ------agg- 1021 gccuggagcc accgu----- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUA GUU(----UU 1141 GGAA)UGCCG CCCAAA-gaa agGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUGAACUC-- ---------- ---------- ---------- )CAU-CCAAG GCUuggaAAA 1381 CA-------- ---------- CUGGC-ACGA GACCGAUAGC AGAC-AAGUA CC(GUGA)G- 1441 N-NAAACUUG -AAA-AGAAC UCU(GA-AG- )AGAG-AGUU C-AAGAGGAC G-UGAAAC-C 1501 GCCAA-GAA< gu---aaacg ggcaggaccc gcggcacg-- gcccgussag auucagcgcg 1561 cuggucgugg ccacgccgcc gg-------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- -cucugu--- 1681 --ggggccga ugac------ ---------- ---------- ----ngcacg gucggagcgu 1741 gcacuucucc cgggcn---c ggcgcucgga ccagcaugcc ucc--uggus g----c---c 1801 ga-cggcuuc cg-------- --cgaag--- ---------- guag------ -----c---- 1861 -------ucu gc-------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---cacuggu gugcguggag aacuaauggc gcgguguucg 2161 caacgccaga ccgagcugcc gaggagagaa ssgagcgcgc cgccucaucu agaggcugcg 2221 cccguccgcc ucccgcagac cuccccgugg cacgcaguag ccuucgaggg caagcggcca 2281 gaguguucgg guggcacgug gugcuugggu cgccgagcga agcugggcg- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- --ccugcucg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACGGACCC GCAAGUCa-a gggg-----( ugggaaagaa 2641 a-)------- ---------- -----cccc- ---------- --acGGCG-- c-(-aau)g- 2701 --[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 --------aa gguauagguu ga(ucagg)u cggcc----- gaggugg--- -------gau 2941 c--------- ---------- ---------- ---------- ---------- ---------c 3001 acc------- --------c- ---------- -------ccg gac------- ---------- 3061 -----agaga gg---ggugu cgcacca--- ---------- ----ccgucc cgccacgucc 3121 gc--u-ccg- ----cucggu gugg-uggag g]-------- ---------c agagcggga- 3181 -acg-cuagG ACCCGAAAGA U-GGUG-AAC UAUG-CCCG- AG|C-AGGAU GAAGUCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGU CCG-CA---G CG-AUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU CCGACUCGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCC~~~ ~~~~~~~~~~ --(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~-|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ---------~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~-~~~~~ ~~~~~~~~~~ ~~~~-~~~~( 3901 ~~~~~~)~~~ ~~~-~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~-- ~~~~~~~--~ 3961 ~|~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---- ~~~~~~~~~~ 4021 ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~-~~~ ~~~--~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~-~ 4201 ~~~~(~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~-- -~~~~~~~~~ ~~~~~~~~~~ ~----~-~~~ ~~~~---~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ -~~~~~~~~- ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(-~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~)~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~---- ---------- --------~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~- -----~~~~~ ~~~~~~~~~~ ~~-----~-- -~---~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~----~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~-~~~~~ ---~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ----~~~~~~ ~~~----~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~-~~~ ~|~~~(~--~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~-~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-->(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ -~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(- -~~~~~~~~~ ~~~-)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~-)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS E.aberrans 9262 bp RNA RNA 11-JAN-191 DEFINITION Encope aberrans. ACCESSION No information KEYWORDS No information. SOURCE Encope aberrans. ORGANISM Encope aberrans. REFERENCE 1 (bases 1 to 1439) AUTHORS Littlewood,D.T. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: Z37117 LOCUS EA28SRRNA 1139 bp DNA INV 09-FEB-1995 DEFINITION E.aberrans gene for 28S (large subunit) ribosomal RNA. ACCESSION Z37117 KEYWORDS 28S ribosomal RNA. SOURCE Encope aberrans. ORGANISM Encope aberrans Eukaryota; Animalia; Eumetazoa; Echinodermata; Echinozoa; Echinoidea; Clypeasteroida; Mellitidae. REFERENCE 1 (bases 1 to 1139) AUTHORS Littlewood,D.T. TITLE Direct Submission JOURNAL Submitted (09-SEP-1994) to the EMBL/GenBank/DDBJ databases. David T.J. Littlewood, Palaeontology, The Natural History Museum, Cromwell Road, London, SW7 5BD, United Kingdom REFERENCE 2 (bases 1 to 1139) AUTHORS Littlewood,D.T. and Smith,A.B. TITLE A combined morphological and molecular phylogeny for sea urchins (Echinoidea: Echinodermata) JOURNAL Proc. R. Soc. Lond., B, Biol. Sci. 347, 213-234 (1995) COMMENT NCBI gi: 665629 FEATURES Location/Qualifiers source 1..1139 /organism="Encope aberrans" /dev_stage="Adult" rRNA 1..1139 /note="partial sequence only; 5'end; PCR primer sequences are not shown; only first 337 bases from 5' end used in publication" /product="28S (large subunit) ribosomal RNA" BASE COUNT 238 a 327 c 387 g 179 t 8 others ORIGIN BASE COUNT 238 a 327 c 387 g 179 t 8131 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~--~~|~~( ~~~~)ua-uc acUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-C)AGGa uu|-cccuca gu---agc(g gcga)gug-a a-----gcgg aau------- 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -----ucgcu g--aauccc- 781 --gggg(ccc ga-)ccggac cccggag-uu guggc----- ---gu-gagg cggcu---uc 841 gggcgcucga gu-------- ---------- ---------- ---------- ----u-cacg 901 gugccga--- --g-guc-c( uc-cugauc- -g)gggca-- -----ccuua --------cc 961 --|c(aga)g |cggg-(ugu cagg)-cccg uu|caggcgc c-ggaacucg ------cgg- 1021 gccuggagcc accaa----- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUA GUU(----UU 1141 GGAA)UGCUG CCCAAA---g agGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUGAACUC-- ---------- ---------- ---------- )CAU-CCAAG GCU----AAA 1381 UA-------- ---------- CUGGC-ACGA GACCGAUAGC AGAC-AAGUA CC(GUGA)-- 1441 G-GAAAGUUG -AAA-AGAAC UCU(GA-AG- )AGAG-AGUU C-AAGAGGAC G-UGAAAC-C 1501 GCCAA-GAA< gc---aaacg agcaggaccc gcggcacg-g gcccguggag auucagcgug 1561 ucggucgccg ucccgsucgg uuucggaucc gcaaggaccg uaccgggucg ggcggcggcg 1621 gucgaugcgu gcacuu--cu cccgggcgcg gcgcucggga ccggcagucc aggucggccg 1681 aacrucggcg cagguagcuc cacc--aucg gucuucgggc cc-------g gcggagaacu 1741 aauagcaucg gc-------u gcaa------ --------cg ccgac----- ---------c 1801 gagcu--g-c cgag------ ----gaa--- gggacgcgag ccgcgccgcg uucgcgggg- 1861 --------cu gca------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---ccuaccg 2161 uccuucccgc ccaggucucc ccgccguuua cuguacucag ugcucgguga gggacggcag 2221 gcggcgagug cggauaggug gcacguggcg ccucg----- ---------- ---------- 2281 -ggussccga gcgaassugg gs-------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- --ccugcucg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACGGGCCC GCGAGUCa-a ggggc----( --cucucgaa 2641 a-)------- ---------- ------ccc- ---------- --acGGCgca au(gaag)gu 2701 --[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---gaagguc ga(uucgg)u cgacc----- gaggugg-ga u--ccucuc- 2941 u--------- ---------- ---------- ---------- ---------- ---------c 3001 cggggagcgc accaccgcc- ---------- -------ccg ----ccau-- --auc----- 3061 ---------- ---------- ---------- ---------- --------gc ucugcuc-gg 3121 ug--u--gg- ---ca----- ------ggag g]-------- ---------u agagcgggc- 3181 -acg-cuagG ACCCGAAAGA U-GGUG-AAC UAUG-CCCGC AG|C-AGGAU GAAGSCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGU CAG-CA---G CG-AUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU CCGACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCU~ ~~~~~~~~~~ --(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~-|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ---------~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~-~~~~~ ~~~~~~~~~~ ~~~~-~~~~( 3901 ~~~~~~)~~~ ~~~-~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~-- ~~~~~~~--~ 3961 ~|~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---- ~~~~~~~~~~ 4021 ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~-~~~ ~~~--~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~-~ 4201 ~~~~(~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~-- -~~~~~~~~~ ~~~~~~~~~~ ~----~-~~~ ~~~~---~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ -~~~~~~~~- ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(-~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~)~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~---- ---------- --------~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~- -----~~~~~ ~~~~~~~~~~ ~~-----~-- -~---~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~----~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~-~~~~~ ---~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ----~~~~~~ ~~~----~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~-~~~ ~|~~~(~--~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~-~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-->(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ -~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(- -~~~~~~~~~ ~~~-)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~-)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (8)-Protos 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS (9)-Arthro 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS (10)-Trach 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS (11)-Hexap 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS (12)-Insec 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS D.mauritia 9262 bp RNA RNA 20-AUG-1991 DEFINITION Drosophila mauritiana.; 28S ribosomal RNA; expansion element; expansion segment D2; ribosomal RNA. ACCESSION X54958 KEYWORDS 28S ribosomal RNA; expansion element; expansion segment D2; ribosomal RNA. SOURCE Drosophila mauritiana. ORGANISM Drosophila mauritiana. REFERENCE 1 (bases 1 to 341) AUTHORS Ruiz Linares,A., Hancock,J.M. and Dover,G.A. TITLE 28S ribosomal RNA expansion segments Secondary structure constraints on the evolution of Drosophila JOURNAL J. Mol. Biol. 219, 381-390 (1991) STANDARD No information REFERENCE 2 (bases 1 to 341) AUTHORS Ruiz Linares,A.A. TITLE Direct Submission JOURNAL Submitted (26-OCT-1990) A. Ruiz Linares, UNIVERSITY OF CAMBRIDGE, DEPARTMENT OF GENETICS, DOWNING STREET, CAMBRIDGE CB2 3EH, UK STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X54958 See X55276-X55281, X54948-X54961. NCBI gi: 7552 BASE COUNT 122 a 39 c 45 g 135 t 8921 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~-~~~~~~ ~~~~~~~~~- 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~-------- ---------- ---------- -----~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ --~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ---------- 361 ---------- ---------- ---------- ---------- ---------- --~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~---~~~ 481 ~~|~~~~~~~ ~~--~~~~~~ ~~~~~~~-~~ ~~~~~~-~-~ ~~~~~~~~-- --~~~~~~~~ 541 ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~-----~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- --------~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ --~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~-~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~-- ---------- ---------- ---------- ---------~ ~~~~~-~~~~ 901 ~~~~~~~~~~ --~-~~~-~( ~-~~~~~~~~ ~~)~~~~~-- ---------- -~~~-~~~~~ 961 --~~~~~~~~ ~~~~~-~~~~ ~~~~~-~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~-----~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------~~ ~~~-~~~~~~ ~~~~~~-~~~ 1141 ~~~~~~~~~~ ~~~~~~---~ ~~~~~~-~~- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ~~~~~~~~-- ---------- ---------- ---------- ~~~~~~~~~~ ~~~----~~~ 1381 ~~-------- --------~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 1441 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~-~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~-~~~~~cc cgauga-acc ugaaua|u-c cguuauggaa aauucaucau 1561 uaaaauugua auauu(uaaa u)aaua-u-u auuaagaaua augugcauuu uuuccauaua 1621 agga|cauug uaaucuauua gcauau--cc caaauuuauc auaaaa-uau aacuuaua-- 1681 guuuauucca auuaaa-uug (cuug)cau- --uuuaacac agaauaaaug uuauuaa-uu 1741 ugauaaagug cugauagauu uauauuau-u acagagcguu aauuu(uucg --)gaauua| 1801 uauaauggca uaauuauc(a uu)gauu--- uu-ugugu-- uuauuaua|u gcucuuguau 1861 gauu------ ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ------aaca 2521 augc-gaa-- --------ag auu-caggau a--cuucggg >~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~---~ ~~~~~~~~~~ 2641 ~~~~------ ---------- ----~~~~~~ ---------- -~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~--------- ---------- ---------- ---------- ---------- ---------~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~-~~~~- ~~|~-~~~~~ ~~~~~~~~~~ 3241 ~~~~~----- -----~~~~~ ~~~-~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~--~ ~--------- ---------- ---~~~~~-- 3361 --~~~--~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ --~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~--------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- -~~~~~~~~~ 3661 ~~~~~~~~~~ -~~~~~~-~~ ~~~-~~~~~~ ~~~~~~~~~- -~~~~~~~~~ ~~~~~~-~~~ 3721 ~~~~~-~~~~ ~~~~~-|~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ -~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~-~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ 3901 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~~--~ 3961 ~~~~~~~~~~ ~-~~~-~-~~ ~~~~~~~~~- -------~~~ ~~~~~~---- ~~~~~~~~~~ 4021 ~--~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~(-~~)~ 4081 |~~~~-~~~~ ~~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~-~~~ ~~~--~~~~~ 4141 ~~~~~~-~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~-~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~-~~ ~~~~~~~~-- -~~~~~~~~~ -~-~~~~~~~ ~------~~~ ~~~~----~~ 4501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ -~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~~~~~~~~~ ~~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 4681 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~-~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~---- ---------- --------~~ ~~~~~~~~~~ ~~~~~~~~~~ 4921 ~~~~~~~-~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ 4981 ~~~~~~~~~- -----~~~~~ ~~~~~~~~~~ ~~-----~-- -~---~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 5101 ~~~~----~~ ~~~-~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-|~~ 5161 ~~~~~~~~~~ -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ ---~~~~~~~ ~~~~~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ---------- ---------- 5281 ---------- ---------- --------~~ ~~~~~~~~~- ----~~~~~~ ~~~-----~~ 5341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~--~ ~~~~-~~~~~ 5401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~-~~~~~~ 5581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 5641 ~~~~~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ -~~~~~~~~~ ~~~~~~~~~~ 5701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 5821 ~~~~~~~~~- ~~~-~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 5881 ~~~-~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~---~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~-~~~ ~|~~~~~--~ 6661 ~~~~~~~~~- ---------- ----~~~~~~ ~~~-~~~~~- -~~~~~~~~~ ~~~~~~~~-~ 6721 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ (~-~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6841 ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~-~~~-~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~-|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~--~~- ~-~~~~~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ -~~~~~-~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 -~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7561 ~-~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~|~~~~ 7741 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~~-~~~ ~~~-~~---- ---------- 7861 ------~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~-~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ---------~ ~~~~~~~~~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 8281 ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8341 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 8701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ -~~|~-~~~~ ~|~~~~~~~~ ~--~~~~-~~ ~~~~-~~~~~ 8881 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS D.melano.1 9262 bp RNA RNA 11-JAN-191 DEFINITION Drosophila melanogaster. ACCESSION No information KEYWORDS No information. SOURCE Drosophila melanogaster. ORGANISM Drosophila melanogaster. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: M21017 Drosophila melanogaster. Added Rousset et al (1991) PNAS 88, 10032-10036 revision BASE COUNT 1281 a 712 c 920 g 1210 t 5139 others ORIGIN 1 |--------- ---------- ---------- -----AACUC UAAGCGGUGG AUC|ACUCGG 61 |CUCAUGG|G U|-CGAUGAA GAA|CGCA(- -GCAA-AC)U |GU-GCGUCA UC-gugu|[- 121 gaacugcagg acaca-ugaa ---------- ---------- ---------- -------]-- 181 ---------- ---------- ---caucg|A CAUUUU-GAA Cgc-(auauc )-g-c|aguc 241 cau------g c(-------- ---------- ---------- ------ug-/ u--)gc---- 301 --uu-ggacu ---acauaug -g-uu-gagg guugua(--- ---------/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -----uuaua )uacaaccuc aacucaua-u gGG----ACU 481 AC|CCCCUGA -A--UU|UA( AGCA)UA-UU AAUUAG-G-G G-AGGAAA-- --AGAAACU( 541 AAC-A)AG-G AU|UUUCUUA GU---AGC(G GCGA)GCG-A A-----AAGA AAAC------ 601 ---------- ---------- ---------- ---------- -AGUUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -----gcacu a--agucac- 781 uuuguc(uau au-)-ggcaa au-gugagau gcagugua-- uggag-cguc aauauucua- 841 ---guaug-- ---------- ---------- ---------- ---------- agaaa-uuaa 901 cgauuuaa-- --g-ucc-u( u-(cuuaaau )g)agg-c-- ---------- -cau-uuaCC 961 --|C(AUA)G |AGGG-(UGC CAGG)-CCCG UA|--uaacg uuaaugauu- a-----cua- 1021 ---------- gaugaugu-u uccaaa---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGUGUU GCU(----UG 1141 AUAG)UGCAG CACUAA---- GUGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAACUC-- ---------- ---------- ---------- )CAU-CUAAA ACU----AAA 1381 UA-------- ---------- UAACC-AUGA GACCGAUAGU AAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGUUG -AAA-AGAAC UCU(ga-au- )AGAG-AGUU A-AACAGUAC G-UGAAAC-U 1501 GCUUA-GAG< gu--uaagcc cgauga-acc ugaaua|u-c cguuauggaa aauucaucau 1561 uaaaauugua auauu(uaaa u)aaua-u-u au-gagaaua gugugcauuu uuuccauaua 1621 agga|cauug uaaucuauua gcauau--ac caaauuuauc auaaaa-uau aacuuaua-- 1681 guuuauucca auuaaa-uug (cuug)cau- --uuuaacac agaauaaaug uuauuaa-uu 1741 ugauaaagug cugauagauu uauaugau-u acagugcguu aauuu(uucg --)gaauua| 1801 uauaauggca uaauuauc(a uu)gauu--- uu-ugugu-- uuauuaua|u gcacuuguau 1861 gauu------ ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ------aaca 2521 augc-gaa-- --------ag auu-cagga- uaccuucggg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUAUGU GCAAGUU--a uuggg----( ----a-uaua 2641 aa)------- ---------- ---c-cuaa- ---------- u---AGCGUA AU(UAAC)UU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -cuaauaaug ggauua--gu uuu-uuagc- 2941 u--------- ---------- ---------- ---------- ---------- ---------a 3001 ---------( ----uuua-- ----)----- --------ua gcuaauuaac -acaaucccg 3061 gggcguucua ua---uaguu a-----ugua uaauguauau (uuau)auua uuuaugccuc 3121 uaacu--gga acgu------ --------ac c]-------- ---------U UGAGCAUAU- 3181 -AUG-CUGUG ACCCGAAAGA U-GGUG-AAC UAUA-CUUG- AU|C-AGGUU GAAGUCAGGG 3241 (GAAA----- -----)CCCU GAU-GGAAGA CCG-AA---A CA-GUUCUGA (CGUGCAAA) 3301 UCG-A-UUGU CAGAAUUGAG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CC AAU-CGAACC AUCUAGUAGC UGGUUCCUUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCAu--|-- -|-uuuaaua uuauaua--- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------aa 3661 auaauCUUAU -C|UGG--UA AA-GCGAAUG AUUAGAGGC- -----cUUAG GGUC--(gaa 3721 a-c)--GAUC U-UAA-|CCU AUUC-UCAAA CUUUA-AAUG |GGUAAGaac cuuaacuuu( 3781 cuugauaug) aagaucaagg uuaug----- ---------- ---------- ---------- 3841 ---------- ---------- ----auauaa a|ug-u-CCC -AGU-GGGCC -ACU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G CUGUGG(GA- UGAA)CCA-- AACGUAA--- UGUUAC---G 3961 U|GCCC-aaa u-UA-AC-AA CUCAUgca-- --------ga uaccau---- -GAAAGGCGU 4021 U--GGUUGCU UAAAACA-GC AGGACGGUGA UC(AUGG-AA GUC)GAAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAGCAACU AGC|CC-UUA AAA--UGGAU 4141 G--GCG-CU- UAAGUUGUA| U|-------- --ACCUAU-- --ACAUUAC| (- -----)-acu uuagu-gAGU AGGA------ 4441 --AGG|-UA- CA-AU-GG-- --------u- -aug-cgu-- a------GAA GUGU-----u 4501 u-GGC(GUAA -)GCCUGCA- UGG|A-GCU| G--CCAUUG- GUAC-AGA-U CUUGGU|GGA 4561 UAGUAGCAAA -UAAUCGAA- u(gagagc-- ---------- ---------- ---------- 4621 --)cuugGAG |GACUGAAGU G-GAG|AAGG GUU|UCGUGU GA-ACA(-GU GGU)UG|AUC 4681 ACGAGUUAGU |-CGG-UCCU AAGU------ -(----)--- 4921 ----AC-GAA AGGGA-AU-A CGG(UUCCAA UU-)CCGUA| -AC----cug u-ugaguauc 4981 cg[u------ ------uugu uauuaaa--- ---------- ---------- -uaugg---- 5041 -----gccuc gugcuca--- -------ucc ug(gcaa-)c aggaa----] cga-ccauaa 5101 agaa-----g ccg--ucgag ag-a-uauc- -GG-AAGA(G UUUUCUUU-) UCUGUU-|UU 5161 A-uagccg-- ---------u acu|a---CC AUGG--AAGU ----CU(UUC GC-)AGAGA- 5221 GA-UA-UGG- uagau----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----gggc-u aGA-----AG 5341 AGCAUGACA( -uauac--)U GUUGUGUC-g auau-u---u -ucucc--uc ggaC-CUUGA 5401 AAA-uuuaug -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------g uggggaca-- ---------- ----cgcaaa cuuc-uca-- ac-aggCCGU 5581 A|CC--AAUA UCC(GCAGCU )GG|UCU-CC AAGGU(GAAG A)GUCUCU-| AGUCG-||A- 5641 UA-G--AAUA AU-GUAG-GU A-AGGGAAGU CGGCAA-AUU -AGAUCCGUA AC(UUCG)GG 5701 AUAAGGAUU| GGCUCUGAA- ---------- -(-----)---- -------UUC AGAACU|G(- --GCA)CGGA 6601 CUUGGGGAAU C|-CGACUGU CU(AAUUA)A AACAAAGCAU UGUG|A--UG G|CCC(---- 6661 uagc)GGG-- ---------- --U-GUUGAC ACAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----GUAAGC G|CGGGUCAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCU ACUGU-CCCU AUCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGAA -U-AAU-UAG CGGGGAAAGA 6961 AGACCCUUUU G|AGCUUGAC UCU-|AAUCU G---GCA-GU |GUAAGGAGA CAUAAGAGGU 7021 GUAGAAUAAG UGGGAGAUA- ---------- --<------- ---------- ----uuagac 7081 (--cucg--- )guuugg--- ---------- ---------- ------->(- -----)---- 7141 -------UAU C-GUCAAUGA AA-UACCACU |ACUCUUAU- -UGUUU-CCU UACUUAc--- 7201 ------(--- --)------| --g GACAU-UGCC A-GGUA-GGG AG-UUUGACU G(GGG)CGGU 7561 A-C|AUCUCU (CAAAUAAUA AC-)GGAG-G U|G|U|CCC- AAGGC-CAGC |UCAGU-GCG 7621 -G(ACA---- GAAA)CCACA CAUAGA|GC( A|A--AAGG) GCAAAUG-CU G-ACUUGAUC 7681 -UCGGUGU(u c--aguac-- )ACACAGGGA CAGC(-AAAA )GCUCGG|CC --UAU|CGA- 7741 UCCUUUUG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -GUU-UAA(- -AGAG-U--U U---)----- ---------- 7861 -----UUA|A CAAGAG-GUG UC|AGA--AA AGUUACCA|U AGG|GAUAAC UG|GCUUGUG 7921 GCGGCCAAGC G(UUCAU)AG CGACGUCGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -AA-)AUUCA CCAA-GCGU| UGGAU(UGUU C)ACCCAUG- 8041 CAAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU AAUGA-c<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- --aa>aacGU UG-UU-GC-G ACAGCAUUCC UGCG(UAGUA 8281 C(GAGA)GGA ACC)CGCAGG U|ACGGACCA AUGGCACA-A UAC|-UUGUU C(GAGC)GAA 8341 CAGUGGUAUG A-CGCUAC-- GU-CCGU--U GGAUUAUGCC U(GAACGCCU C-U-A)AGGU 8401 CGUAUCCG-U GCUG--g-ac uGCA--AUGA U|----( ---)------ 8701 -----gaauc |aauug(-ua aacga)cu-u uugua----a cag|gcaagg uguuguaagu 8761 gg-uugagca gc----(ugc -cau------ ---------- ---------- ---------- 8821 ----)----a cugcgauc-c ac-|ugaagc u|uau--ccu u--ugc-uug a---uga-uu 8881 cga--|---- ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS D.melano.2 9262 bp RNA RNA 11-JAN-191 DEFINITION Drosophila melanogaster. ACCESSION No information KEYWORDS No information. SOURCE Drosophila melanogaster. ORGANISM Drosophila melanogaster. REFERENCE 1 (bases 1 to 341) AUTHORS insert a G. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: M21017 + X15707 correction at position 1001 (E.coli #) Drosophila melanogaster. Added Rousset et al (1991) PNAS 88, 10032-10036 revision BASE COUNT 1281 a 712 c 921 g 1210 t 5138 others ORIGIN 1 |--------- ---------- ---------- -----AACUC UAAGCGGUGG AUC|ACUCGG 61 |CUCAUGG|G U|-CGAUGAA GAA|CGCA(- -GCAA-AC)U |GU-GCGUCA UC-gugu|[- 121 gaacugcagg acaca-ugaa ---------- ---------- ---------- -------]-- 181 ---------- ---------- ---caucg|A CAUUUU-GAA Cgc-(auauc )-g-c|aguc 241 cau------g c(-------- ---------- ---------- ------ug-/ u--)gc---- 301 --uu-ggacu ---acauaug -g-uu-gagg guugua(--- ---------/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -----uuaua )uacaaccuc aacucaua-u gGG----ACU 481 AC|CCCCUGA -A--UU|UA( AGCA)UA-UU AAUUAG-G-G G-AGGAAA-- --AGAAACU( 541 AAC-A)AG-G AU|UUUCUUA GU---AGC(G GCGA)GCG-A A-----AAGA AAAC------ 601 ---------- ---------- ---------- ---------- -AGUUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -----gcacu a--agucac- 781 uuuguc(uau au-)-ggcaa au-gugagau gcagugua-- uggag-cguc aauauucua- 841 ---guaug-- ---------- ---------- ---------- ---------- agaaa-uuaa 901 cgauuuaa-- --g-ucc-u( u-(cuuaaau )g)agg-c-- ---------- -cau-uuaCC 961 --|C(AUA)G |AGGG-(UGC CAGG)-CCCG UA|--uaacg uuaaugauu- a-----cua- 1021 ---------- gaugaugu-u uccaaa---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGUGUU GCU(----UG 1141 AUAG)UGCAG CACUAA---- GUGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAACUC-- ---------- ---------- ---------- )CAU-CUAAA ACU----AAA 1381 UA-------- ---------- UAACC-AUGA GACCGAUAGU AAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGUUG -AAA-AGAAC UCU(ga-au- )AGAG-AGUU A-AACAGUAC G-UGAAAC-U 1501 GCUUA-GAG< gu--uaagcc cgauga-acc ugaaua|u-c cguuauggaa aauucaucau 1561 uaaaauugua auauu(uaaa u)aaua-u-u au-gagaaua gugugcauuu uuuccauaua 1621 agga|cauug uaaucuauua gcauau--ac caaauuuauc auaaaa-uau aacuuaua-- 1681 guuuauucca auuaaa-uug (cuug)cau- --uuuaacac agaauaaaug uuauuaa-uu 1741 ugauaaagug cugauagauu uauaugau-u acagugcguu aauuu(uucg --)gaauua| 1801 uauaauggca uaauuauc(a uu)gauu--- uu-ugugu-- uuauuaua|u gcacuuguau 1861 gauu------ ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ------aaca 2521 augc-gaa-- --------ag auu-cagga- uaccuucggg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUAUGU GCAAGUU--a uuggg----( ----a-uaua 2641 aa)------- ---------- ---c-cuaa- ---------- u---AGCGUA AU(UAAC)UU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -cuaauaaug ggauua--gu uuu-uuagc- 2941 u--------- ---------- ---------- ---------- ---------- ---------a 3001 ---------( ----uuua-- ----)----- --------ua gcuaauuaac -acaaucccg 3061 gggcguucua ua---uaguu a-----ugua uaauguauau (uuau)auua uuuaugccuc 3121 uaacu--gga acgu------ --------ac c]-------- ---------U UGAGCAUAU- 3181 -AUG-CUGUG ACCCGAAAGA U-GGUG-AAC UAUA-CUUG- AU|C-AGGUU GAAGUCAGGG 3241 (GAAA----- -----)CCCU GAU-GGAAGA CCG-AA---A CA-GUUCUGA (CGUGCAAA) 3301 UCG-A-UUGU CAGAAUUGAG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CC AAU-CGAACC AUCUAGUAGC UGGUUCCUUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCAu--|-- -|-uuuaaua uuauaua--- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------aa 3661 auaauCUUAU -C|UGG--UA AA-GCGAAUG AUUAGAGGC- -----cUUAG GGUC--(gaa 3721 a-c)--GAUC U-UAA-|CCU AUUC-UCAAA CUUUA-AAUG |GGUAAGaac cuuaacuuu( 3781 cuugauaug) aagaucaagg uuaug----- ---------- ---------- ---------- 3841 ---------- ---------- ----auauaa a|ug-u-CCC -AGU-GGGCC -ACU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G CUGUGG(GA- UGAA)CCA-- AACGUAA--- UGUUACG--G 3961 U|GCCC-aaa u-UA-AC-AA CUCAUgca-- --------ga uaccau---- -GAAAGGCGU 4021 U--GGUUGCU UAAAACA-GC AGGACGGUGA UC(AUGG-AA GUC)GAAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAGCAACU AGC|CC-UUA AAA--UGGAU 4141 G--GCG-CU- UAAGUUGUA| U|-------- --ACCUAU-- --ACAUUAC| (- -----)-acu uuagu-gAGU AGGA------ 4441 --AGG|-UA- CA-AU-GG-- --------u- -aug-cgu-- a------GAA GUGU-----u 4501 u-GGC(GUAA -)GCCUGCA- UGG|A-GCU| G--CCAUUG- GUAC-AGA-U CUUGGU|GGA 4561 UAGUAGCAAA -UAAUCGAA- u(gagagc-- ---------- ---------- ---------- 4621 --)cuugGAG |GACUGAAGU G-GAG|AAGG GUU|UCGUGU GA-ACA(-GU GGU)UG|AUC 4681 ACGAGUUAGU |-CGG-UCCU AAGU------ -(----)--- 4921 ----AC-GAA AGGGA-AU-A CGG(UUCCAA UU-)CCGUA| -AC----cug u-ugaguauc 4981 cg[u------ ------uugu uauuaaa--- ---------- ---------- -uaugg---- 5041 -----gccuc gugcuca--- -------ucc ug(gcaa-)c aggaa----] cga-ccauaa 5101 agaa-----g ccg--ucgag ag-a-uauc- -GG-AAGA(G UUUUCUUU-) UCUGUU-|UU 5161 A-uagccg-- ---------u acu|a---CC AUGG--AAGU ----CU(UUC GC-)AGAGA- 5221 GA-UA-UGG- uagau----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----gggc-u aGA-----AG 5341 AGCAUGACA( -uauac--)U GUUGUGUC-g auau-u---u -ucucc--uc ggaC-CUUGA 5401 AAA-uuuaug -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------g uggggaca-- ---------- ----cgcaaa cuuc-uca-- ac-aggCCGU 5581 A|CC--AAUA UCC(GCAGCU )GG|UCU-CC AAGGU(GAAG A)GUCUCU-| AGUCG-||A- 5641 UA-G--AAUA AU-GUAG-GU A-AGGGAAGU CGGCAA-AUU -AGAUCCGUA AC(UUCG)GG 5701 AUAAGGAUU| GGCUCUGAA- ---------- -(-----)---- -------UUC AGAACU|G(- --GCA)CGGA 6601 CUUGGGGAAU C|-CGACUGU CU(AAUUA)A AACAAAGCAU UGUG|A--UG G|CCC(---- 6661 uagc)GGG-- ---------- --U-GUUGAC ACAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----GUAAGC G|CGGGUCAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCU ACUGU-CCCU AUCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGAA -U-AAU-UAG CGGGGAAAGA 6961 AGACCCUUUU G|AGCUUGAC UCU-|AAUCU G---GCA-GU |GUAAGGAGA CAUAAGAGGU 7021 GUAGAAUAAG UGGGAGAUA- ---------- --<------- ---------- ----uuagac 7081 (--cucg--- )guuugg--- ---------- ---------- ------->(- -----)---- 7141 -------UAU C-GUCAAUGA AA-UACCACU |ACUCUUAU- -UGUUU-CCU UACUUAc--- 7201 ------(--- --)------| --g GACAU-UGCC A-GGUA-GGG AG-UUUGACU G(GGG)CGGU 7561 A-C|AUCUCU (CAAAUAAUA AC-)GGAG-G U|G|U|CCC- AAGGC-CAGC |UCAGU-GCG 7621 -G(ACA---- GAAA)CCACA CAUAGA|GC( A|A--AAGG) GCAAAUG-CU G-ACUUGAUC 7681 -UCGGUGU(u c--aguac-- )ACACAGGGA CAGC(-AAAA )GCUCGG|CC --UAU|CGA- 7741 UCCUUUUG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -GUU-UAA(- -AGAG-U--U U---)----- ---------- 7861 -----UUA|A CAAGAG-GUG UC|AGA--AA AGUUACCA|U AGG|GAUAAC UG|GCUUGUG 7921 GCGGCCAAGC G(UUCAU)AG CGACGUCGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -AA-)AUUCA CCAA-GCGU| UGGAU(UGUU C)ACCCAUG- 8041 CAAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU AAUGA-c<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- --aa>aacGU UG-UU-GC-G ACAGCAUUCC UGCG(UAGUA 8281 C(GAGA)GGA ACC)CGCAGG U|ACGGACCA AUGGCACA-A UAC|-UUGUU C(GAGC)GAA 8341 CAGUGGUAUG A-CGCUAC-- GU-CCGU--U GGAUUAUGCC U(GAACGCCU C-U-A)AGGU 8401 CGUAUCCG-U GCUG--g-ac uGCA--AUGA U|----( ---)------ 8701 -----gaauc |aauug(-ua aacga)cu-u uugua----a cag|gcaagg uguuguaagu 8761 gg-uugagca gc----(ugc -cau------ ---------- ---------- ---------- 8821 ----)----a cugcgauc-c ac-|ugaagc u|uau--ccu u--ugc-uug a---uga-uu 8881 cga--|---- ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Cul.puncta 9262 bp RNA RNA 11-JAN-191 DEFINITION Culicoides punctatus. ACCESSION No information KEYWORDS No information. SOURCE Culicoides punctatus. ORGANISM Culicoides punctatus. REFERENCE 1 (bases 1 to 341) AUTHORS Pawlowski,J., Szadziewski,R., Kmieciak,D., Fahrni,J. and Bittar,G. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X89639 LOCUS CP28SRRNA 1017 bp DNA INV 20-JUL-1995 DEFINITION C.punctatus DNA for 28S ribosomal RNA gene. ACCESSION X89639 NID g914843 KEYWORDS 28S ribosomal RNA; 28S rRNA gene. SOURCE Culicoides punctatus. ORGANISM Culicoides punctatus Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicomorpha; Chironomoidea; Ceratopogonidae; Culicoides. REFERENCE 1 (bases 1 to 1017) AUTHORS Pawlowski,J., Szadziewski,R., Kmieciak,D., Fahrni,J. and Bittar,G. TITLE Phylogeny of Mosquitoes and related families (Diptera: Culicomorpha) based on the 28S rDNA sequence data JOURNAL Unpublished REFERENCE 2 (bases 1 to 1017) AUTHORS Pawlowski,J. TITLE Direct Submission JOURNAL Submitted (13-JUL-1995) to the EMBL/GenBank/DDBJ databases. J. Pawlowski, University of Geneva, Dept of Zoology & Animal Biology, 154 route de Malagnou, CH-1224 Chene-Bougeries, SWITZERLAND COMMENT NCBI gi: 914843 FEATURES Location/Qualifiers source 1..1017 /organism="Culicoides punctatus" /dev_stage="adult" /sex="female" /clone="CUL1.1" rRNA <1..>1017 /gene="28S rRNA" /note="fragment including divergent domains D4-D7" /product="28S ribosomal RNA" BASE COUNT 307 a 157 c 239 g 314 t ORIGIN BASE COUNT 307 a 157 c 239 g 314 t 8245 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~--~~|~~( ~~~~)~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 901 ~~~~~~~~~~ ~~~-~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 --|~(~~~)~ |~~~~-(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~----~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~-~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~-~(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~-------- --------~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~------ ---------- ---------- --------~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~]~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~----- ----~)~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~-- 3361 --~)~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGA -GCAu--|-- -|-agauauu uc-ugu---- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------aa 3661 uaauuCUUAU -C|UGG--UA AA-GCGAAUG AUUAGAGGC- -----aUUAG GAUC--(gaa 3721 a-c)--GAUC U-UAA-|CCU AUUC-UCAAA CUAUA-AAUG |GGUACGuug -aaugacau- 3781 ucuugauug- augucauuu- ---------- -------gua cuugauaca- -(cuug)--- 3841 uguaucgguu gu------ua ga--uu-aau a|ug-ugcuc -agu-gGGCC AAGU-UUUG( 3901 G-UAAG)CAG AAC-UGGU-G CUGUGG(GA- UGAA)CCA-- AACGUAA--- UGUUAAG--G 3961 C|GCCA-aaa u-AA-AC-GA CAUAUcau-- ------g-ga uaccau---- -GAAAGGUGU 4021 U--GAUUGCU GAAGACA-GC AGGACGGUGG AC(AUGG-AA GUU)GUCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAGCAAUU AGC|CC-UUA AAA--UGGAU 4141 G--GCG-CU- UAAGUCGUU| U|-------- --GCCUAU-- --ACAUUAC| (- -----)-auu uuagu-gAGU AGGA------ 4441 --GGG|-UA- UG-AU-GA-- --------U- -GUG-CGU-- U------GAA GUAC-----C 4501 U-AGC(GUGA -)guuggua- uga|A-GCC| G--UCAUUA- GCAC-AGA-U CUU-GU|GG- 4561 UAGUAGCAAA -UAUUCgaa- u(gagau--- ---------- ---------- ---------- 4621 --)cuugGAU |GGCUGAAGU G-GAG|GAGG UUU|UCGUGU CA-ACA(-GC AGU)UG|AAC 4681 ACGAGUUAGU |-CAG-UCCU AAGG------ -(----)--- 4921 -----C-GAA AGGGA-AU-C CGG(UUACAA UU-)CCGGA| -AC----cug u-uaaguaua 4981 cg[uuugcau -aua------ -------uca cc-----u-- -u------ua ug-------- 5041 ---gucgauu augcaa---- -------ucu cg(guaa-)c gagaaac-u] uuc---auug 5101 agaa-----g cca--uuagg ag-g-uauc- -GG-AAGA(G UUUUCUUU-) UCUGUU-|UU 5161 A-caguug-- --------ua cuc|a---CC AUGG--AAGU ----CU(UUC AU-)AGAGA- 5221 GA-UA-UGG- uguaa----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- --------u- ----aaau-u gGU-----AG 5341 AGCAUGGCA( -uuaaau-)U GCUGUGUC-g auac-u---c -ucuua--cu ggaC-CUUGA 5401 AA--aucaa- -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------u gaaagcua-- ---------- ----cgcaaa uu~~~~~~-- ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~-~~~ ~|~~~(~--~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~-~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-->(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ -~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(- -~~~~~~~~~ ~~~-)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~-)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Das.saxico 9262 bp RNA RNA 11-JAN-191 DEFINITION Dasyhelea saxicola. ACCESSION No information KEYWORDS No information. SOURCE Dasyhelea saxicola. ORGANISM Dasyhelea saxicola. REFERENCE 1 (bases 1 to 341) AUTHORS Pawlowski,J., Szadziewski,R., Kmieciak,D., Fahrni,J. and Bittar,G. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X89640 LOCUS DS28SRRNA 1016 bp DNA INV 20-JUL-1995 DEFINITION D.saxicola DNA for 28S ribosomal RNA gene. ACCESSION X89640 NID g914845 KEYWORDS 28S ribosomal RNA; 28S rRNA gene. SOURCE Dasyhelea saxicola. ORGANISM Dasyhelea saxicola Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicomorpha; Chironomoidea; Ceratopogonidae; Dasyhelea. REFERENCE 1 (bases 1 to 1016) AUTHORS Pawlowski,J., Szadziewski,R., Kmieciak,D., Fahrni,J. and Bittar,G. TITLE Phylogeny of Mosquitoes and related families (Diptera: Culicomorpha) based on the 28S rDNA sequence data JOURNAL Unpublished REFERENCE 2 (bases 1 to 1016) AUTHORS Pawlowski,J. TITLE Direct Submission JOURNAL Submitted (13-JUL-1995) to the EMBL/GenBank/DDBJ databases. J. Pawlowski, University of Geneva, Dept of Zoology & Animal Biology, 154 route de Malagnou, CH-1224 Chene-Bougeries, SWITZERLAND COMMENT NCBI gi: 914845 FEATURES Location/Qualifiers source 1..1016 /organism="Dasyhelea saxicola" /dev_stage="adult" /sex="male" /clone="CUL16.2" rRNA <1..>1016 /gene="28S rRNA" /note="fragment including divergent domains D4-D7" /product="28S ribosomal RNA" BASE COUNT 313 a 148 c 234 g 319 t 2 others ORIGIN BASE COUNT 313 a 148 c 234 g 319 t 8248 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~--~~|~~( ~~~~)~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 901 ~~~~~~~~~~ ~~~-~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 --|~(~~~)~ |~~~~-(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~----~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~-~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~-~(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~-------- --------~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~------ ---------- ---------- --------~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~]~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~----- ----~)~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~-- 3361 --~)~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGA -GCAu--|-- -|-agauauu uu-ugu---- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------aa 3661 uaauuCUUAU -C|UGG--UA AA-GCGAAUG AUUAGAGGC- -----cUUAG GAUC--(gaa 3721 a-c)--GAUC U-UAA-|CCU AUUC-UCAAA CUAUA-AAUG |GGUACGuug -aauaacau- 3781 ucuugauug- auguuauuu- ---------- ----guacuu guuaaugca- -(cuug)--- 3841 ugcauugguu gu------ua ga--uu-aau a|ug-ugcuc -agu--GGCC AAGU-UUUG( 3901 G-UAAG)CAG AAC-UGGU-G CUGUGG(GA- UGAA)CCA-- AACGUUA--- UGUUAAG--G 3961 C|GCCA-aaa u-AA-AC-GA CAUAUcau-- ------g-ga uaccau---- -GAAAGGUGU 4021 U--GAUUGCU GAAGACA-GC AGGACGGUGG AC(AUGG-AA GUU)GUCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAGCAAUU AGC|CC-UUA AAA--UGGAU 4141 G--GCG-CU- UAAGUCGUU| U|-------- --GCCUAU-- --ACAUAAC| (- -----)-auu uuagu-gAGU AGGA------ 4441 --GGG|-UA- UG-AU-GA-- --------U- -GUG-CGU-- U------GAA GUAU-----C 4501 U-AGC(GUAA -)N-ugaua- uga|A-GCC| G--UCAUUA- GCAC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCgaa- u(gagau--- ---------- ---------- ---------- 4621 --)cuugGAU |GGCUGAAGU G-GAG|GAGG UUU|UCGUGU CA-ACA(-GC AGU)UG|AAC 4681 ACGAGUUAGU |-CAG-UCCU AAGG------ -(----)--- 4921 -----C-GAA AGGGA-AU-C CGG(UUACAA UU-)CCGGA| -AC----cug u-ugaguaua 4981 cg[uuugcau -aug------ ---------- ---------- ----guau(- -cuugu-)au 5041 augaa----- ---------- -------ucu cg(guaa-)c gggaaac-u] uuc---auga 5101 agaa-----g c-a--ucagg ag-g-uauc- -GG-AAGA(G UUUUCUUU-) UCUGUU-|UU 5161 A-caguug-- --------ua cuc|a---CC AUGG--AAGU ----CU(UUC AU-)AGAGA- 5221 GA-UA-UGG- uguaa----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- --------u- ----aaac-u gGU-----AG 5341 AGCAUGGCA( -uuaaau-)U GCUGUGUC-g auau-u---c -ucuug--cu ggaC-CUUGA 5401 AA--Uuauga a<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- a--gggca-- ---------- ----cgnaaa uu~~~~~~-- ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~-~~~ ~|~~~(~--~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~-~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-->(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ -~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(- -~~~~~~~~~ ~~~-)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~-)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Camptoc.sp 9262 bp RNA RNA 11-JAN-191 DEFINITION Camptochironomus sp. ACCESSION No information KEYWORDS No information. SOURCE Camptochironomus sp. ORGANISM Camptochironomus sp. REFERENCE 1 (bases 1 to 341) AUTHORS Pawlowski,J., Szadziewski,R., Kmieciak,D., Fahrni,J. and Bittar,G. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X89649 LOCUS CS28SRRN1 1039 bp DNA INV 20-JUL-1995 DEFINITION Camptochironomus sp. DNA for 28S ribosomal RNA gene. ACCESSION X89649 NID g908844 KEYWORDS 28S ribosomal RNA; 28S rRNA gene. SOURCE Camptochironomus sp.. ORGANISM Camptochironomus sp. Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicomorpha; Chironomoidea; Chironomidae; Camptochironomus. REFERENCE 1 (bases 1 to 1039) AUTHORS Pawlowski,J., Szadziewski,R., Kmieciak,D., Fahrni,J. and Bittar,G. TITLE Phylogeny of Mosquitoes and related families (Diptera: Culicomorpha) based on the 28S rDNA sequence data JOURNAL Unpublished REFERENCE 2 (bases 1 to 1039) AUTHORS Pawlowski,J. TITLE Direct Submission JOURNAL Submitted (13-JUL-1995) to the EMBL/GenBank/DDBJ databases. J. Pawlowski, University of Geneva, Dept of Zoology & Animal Biology, 154 route de Malagnou, CH-1224 Chene-Bougeries, SWITZERLAND COMMENT NCBI gi: 908844 FEATURES Location/Qualifiers source 1..1039 /organism="Camptochironomus sp." /dev_stage="adult" /sex="male" /clone="CUL15.32" rRNA <1..>1039 /gene="28S rRNA" /note="fragment including divergent domains D4-D7" /product="28S ribosomal RNA" BASE COUNT 298 a 183 c 269 g 289 t ORIGIN BASE COUNT 298 a 183 c 269 g 289 t 8223 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~--~~|~~( ~~~~)~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 901 ~~~~~~~~~~ ~~~-~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 --|~(~~~)~ |~~~~-(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~----~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~-~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~-~(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~-------- --------~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~------ ---------- ---------- --------~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~]~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~----- ----~)~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~-- 3361 --~)~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGA -GCAu--|-- -|-aaaaugg uugcuu---- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------aa 3661 caacucauac -C|UGG--UA AA-GCGAAUG AUUAGAGGC- -----cUUAG GAAC--(gaa 3721 a-u)--GUUC U-UAA-|CCU AUUC-UCAAA CUUUA-AAUG |GGUAUGuaa -guuagcau- 3781 acuugaaug- auguuggcc- ---------- ---------- auuggccgu- (uac)----- 3841 gcggcacg-- --------u- -aagau-ugu a|ug-cgccc -agu--GGCC AAGU-UUUG( 3901 G-UAAG)CAG AAC-UGGU-G CUGCGG(GA- UGAG)CCG-- AUCGCAU--- UGUUAAG--G 3961 C|GCCC-aaa u-AA-AC-GA CGCAUcau-- ------c-ga uaccau---- -GAAAGGUGU 4021 U--GAUUGCU GAAGACA-GC AGGACGGUGG AC(AUGG-AA GUU)GUCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAGCAAUU AGC|CC-UUA AAA--UGGAU 4141 G--GCG-CU- CAAGUCGUU| U|-------- --GCCGAU-- --ACAAUGC| (- -----)-auc uugac-gAGU AGGA------ 4441 --AGG|-UA- UU-AU-GG-- --------U- -AUG-CGU-- U------GAA GUGC-----C 4501 U-AAC(GUGA -)GUUGGUA- UGG|A-GCU| G--CCAUAA- GCAC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCgaa- u(gagau--- ---------- ---------- ---------- 4621 --)cuugGAU |GGCUGAAGU G-GAG|AAGG UUU|UCGUGU CA-ACA(-GC AGU)UG|GAC 4681 ACGAGUUAGU |-CAG-UCCU AAGC------ -(----)--- 4921 ----GC-GAA AGGGA-AU-A CGG(UUCCAA UU-)CCGUA| -AC----cua u-uggguaua 4981 cg[uuugu-- ---------- ---------- -------uaa uuguugau(- -uucg--)gu 5041 cggcgauuag ca-------- -------ucu cg(guaa-)c gagaagc-u] cuc--aua-g 5101 agac-----g uca--auggg ag-a-uauc- -GA-AAGA(G UUUUCUUU-) UCUGUU-|UU 5161 A-cagucg-- --------ua cgc|a---CC AUGG--AAGU ----CU(UUC AU-)AGAGA- 5221 GA-UA-UGG- uauaa----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- --------c- ----agac-u gGU-----AG 5341 AGCAUGACA( -uuaaau-)U GUUGUGUC-g guau-u---c -ucuca--uu ggaC-CUUGA 5401 AA--uc-uau -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------g aa-gggca-- ---------- ----cguaaa uu~~~~~~-- ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~-~~~ ~|~~~(~--~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~-~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-->(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ -~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(- -~~~~~~~~~ ~~~-)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~-)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Chi.tentan 9262 bp RNA RNA 06-FEB-1997 DEFINITION Chironomus tentans.; 18S ribosomal RNA; 18S rRNA gene; 28S ribosomal RNA; 28S rRNA gene; 5.8S ribosomal RNA; 5.8S rRNA gene. ACCESSION X99212 KEYWORDS 18S ribosomal RNA; 18S rRNA gene; 28S ribosomal RNA; 28S rRNA gene; 5.8S ribosomal RNA; 5.8S rRNA gene. SOURCE Chironomus tentans. ORGANISM Chironomus tentans. REFERENCE 1 (bases 1 to 8447) AUTHORS Koepf,H., Hankeln,T. and Schmidt,E.R. TITLE Organization and evolution of the rDNA genes in Chironomus JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 8447) AUTHORS Koepf,H. TITLE Direct Submission JOURNAL Submitted (09-JUL-1996) H. Koepf, Univ. Mainz, Inst. Molekulargenet. und Gentechnol. Sicherheitsforschung, Becherweg 32, D-55099 Mainz, FRG STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X99212 BASE COUNT 1214 a 768 c 969 g 1183 t 5128 others ORIGIN 1 |--------- ---------- ---------- -----AACCC UAGACAGGGG AUC|ACUUGG 61 |CUCAUGG|G U|-CGAUGAA GAC|CGCA(- -GCAA-AC)U |GC-GCGUCG CC-augu|[- 121 gaacugcagg acaca-ugau ---------- ---------- ---------- -------]-- 181 ---------- ---------- ---cauug|A CAUGUU-GAA Cgc-(auauu )-g-c|gccu 241 uau------a c(-------- ---------- ---------- -----au?/? acu)gu---- 301 --au-aaggu ---acauaug -g-uu-gagu gucgua(--- ---auuu--/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -----aauuu )cgcgaccuc aacucaug-u gag----ACU 481 AC|CCCCUGA -A--UU|UA( AGCA)UA-UU AAUUAG-G-G G-AGGAAA-- --AGAAACC( 541 AAC-A)GG-G AU|UCCCUUA GU---AGU(G GCGA)ACG-A A-----ACGG GAUC------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -----ucacg u--aggauc- 781 auaggc(uua au-)ugucua uu-gaucgau uccgugua-a aggag-gguc cauuaucuu- 841 ---gcacau- ---------- ---------- ---------- ---------- auaaa-cauc 901 auauuuaa-- --g-ucc-a( g-(cuugaau )g)cgg-c-- ---------u caau-auaCC 961 --|C(ACA)G |AGGG-(UGC CAGG)-CCCG UA|--uaugu augaugcuug u-----guaa 1021 gug------g gcuaucaa-c uccuag---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CAUGUU GCU(----UG 1141 AUAG)UGCAG CAUUAA---- GUGGGA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAACUC-- ---------- ---------- ---------- )CUU-CUAAG GCU----AAA 1381 UA-------- ---------- UUACC-AUGA GACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGUUG -AAA-AGCAC UCU(ga-au- )AGAG-AGUC A-AAUAGUAC G-UGAAAC-U 1501 GUCUA-GGG< gcucaaaccu aa-aga-acc caaaua|u-c uaaacggaga aauuca-aua 1561 cua------- ccggu-uaa- --acgcgu-- --------ag ugu-gcacuu uucucuuagu 1621 a--------- aga-cgccgu gauccauuag aaauugauac auacaaaaug uauauugggu 1681 caucaauagg ccaguaugaa guuuauugga acaaauggca ugaucuuaua cggucgugug 1741 uauugucugg uaagcauauu guguccugua augacugucu gauggauuuu aaagaugaua 1801 ucaaugaugu uacggcauca cuuauca--- uugauaagag uacgauaucu aucugauca- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- --------ac 2521 ggug-guu-- --------aa auu-uggga- uaccuuuugg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAUCUAGUAU GCGAGUAA-- auggau---( aguuu-auga 2641 a-)------- ---------- --au-cuau- ---------- ---UUGCAUA AU(AAAC)UU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------c uguuuuuaug ggauuac-ga gauuag-au- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----acuaac ----)----- ---------g uguuugucuc uuccaucccg 3061 ggguauuuuc au---caaca uaug------ -----(cuug )--------- -------cau 3121 augg---aaa auau------ --------ac c]-------- ---------A UGAGCACAC- 3181 -UGG-AUACG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AU|C-AGGUC GAAGUCAGGG 3241 (GAAA----- -----)CCCU GAU-GGAGGA CCG-AA---G CA-GUUCUGA (CGUGCAAA) 3301 UCG-A-UUGU CAGAAUUGGG CAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CC AAU-CGAACC AUCUAGUAGC UGGUUCCUUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGA -GCAU--|-- -|-aaaagag uuguauugc- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 uaacuCAUAC -C|UGG--UA AA-GCGAAUG AUUAGAGGC- -----CUUAG GAAC--(gaa 3721 a-u)--GUUC U-UAA-|CCU AUUC-UCAAA CUUUA-AAUG |GGUAUGuaa -gucaacau( 3781 acuugauug) auguugacca u--------- -----uaguu augucucgu- -(acau)--a 3841 gcacguaaga uu-------- --------gu a|ug-cgccc -AGU-GGGCC AAGU-UUUG( 3901 G-UAAG)CAG AAC-UGGU-G CUGCGG(GA- UGAA)CCG-- AACGCAU--- UGUUAAG--G 3961 C|GCCC-aaa u-AA-AC-GA CGCAUcau-- ------c-ga uaccau---- -GAAAGGUGU 4021 U--GAUUGCU GAAGACA-GC AGGACGGUGG AC(AUGG-AA GUU)GUCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAGCAAUU AGC|CC-UUA AAA--UGGAU 4141 G--GCG-CU- CAAGUCGUU| U|-------- --GCCGAU-- --ACAAUGC| (- -----)-auc uuaac-gAGU AGGA------ 4441 --AGG|-UA- UU-AU-GG-- --------U- -AUG-CGU-- U------GAA GUAU-----U 4501 U-AAC(GUGA -)GUUAAUA- UGG|A-GCU| G--CCAUAA- GCAC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCGAA- u(gagau--- ---------- ---------- ---------- 4621 --)cuugGAU |GGCUGAAGU G-GAG|AAGG UUU|UCGUGU CA-ACA(-GC AGU)UG|GAC 4681 ACGAGUUAGU |-CAG-UCCU AAGC------ -(----)--- 4921 ----GC-GAA AGGGA-AU-A CGG(UUCCAA UU-)CCGUA| -AC----cua u-ugaguaua 4981 cg[u------ ------uugu u----auu-- -------u-- ----gaaa(- -uucg--)uu 5041 ucg-aau--- -aaca----- -------ucu cg(guaa-)c gagaag---] cuc-ucauag 5101 agac-----g uca--auggg ag-g-uauc- -GA-AAGA(G UUUUCUUU-) UCUGUU-|UU 5161 A-caaucgu- ---------a cgu|a---CC AUGG--AAGU ----CU(UUC AU-)AGAGA- 5221 GA-UA-UGG- uauaa----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- --------c- ----agau-u ggu-----AG 5341 AGCAUGACA( -uuaaau-)U GUUGUGUC-g guau-a---c -ucuca--uu ggaC-CUUGA 5401 AAA-ucuaug -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------a aagggaca-- ---------- ----cgauaa auuc-uca-- au-agcCUGU 5581 A|CC--cgaA UCC(GCAGCA )GG|UCU-CC AAGAU(UAAG A)GUCUCU-| AGUCG-||A- 5641 UA-G--AACA AU-GUAG-GU A-AGGGAAGU CGGCAA-AUU -AGAUCCGUA AC(UUCG)GG 5701 AUAAGGAUU| GGCUCUGAA- ---------- -(-----)---- -------UUC AGAACU|G(- --GCA)CGG- 6601 UUUAGGGAAU C|-CGACUGU CU(AAUUA)A AACAAAGCAU UGUG|A--UG G|UUC(---u 6661 cggu)GGA-- ---------- --U-GUUGAC ACAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---cgugaa- ----(gaaa) -----uucaa ----GCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU AUCUACUAUC 6901 UA|GCGAAAC C|aca-GCCA AG(GGAA-CG GG)CUUGGAA -A-CAC-UAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCU G---GCA-UU |GUGAGGCGG UAUAAGAGGU 7021 GCAGUAUAGG UGGGAgcu-- ---------- --<------- ---------- --------aa 7081 (--gcaa--- )uu------- ---------- ---------- ------->(- -----)---- 7141 --------ag c-GCCAAUGA GA-UACCACC |ACUCUUAC- -UGCUG-CUU CACUUAU--- 7201 ------(--- --)------| --a GACAU-UGCC A-GGUG-GGG AG-UUUGACU G(GGG)CGGU 7561 A-C|AUCUCC (AAAACAAUA AC-)GGAG-G U|G|U|CCA- AAGGU-CAGC |UCAGU-GUG 7621 -G(ACA---- GAAA)CCACA CGUUGA|GU( A|U--AAGG) ACAAAAG-CU G-GCUUGAUC 7681 -UUGAUAU(u c--aguac-- )GUAUCGGGA CGGC(-UAAU )GCCUGG|CC --UUA|CGA- 7741 UCCUUUUG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- gcUU-UAA(- -AGAG-U--U U---)----- ---------- 7861 -----UUA|A CAAGAG-GUG UC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCCGCCAAGC G(UUCAU)AG CGACGUGGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -AA-)AUUCA CAAA-GCGU| AGGAU(UGUU C)ACCCUUU- 8041 CAAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GGUGG-C<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- -auu>uauAC UG-UU-GA-U AUGGCAUACC UGUG(CAGUA 8281 C(GAGA)GGA AC-)CACAGG U|ACAAACCA AUGGCACA-A UAC|-UUGUC C(GAGC)GGA 8341 CAUUGGUAUG A-AGCUAC-- GU-UUGC--C GGAUUAUGCC U(GAACGCCU C-U-A)AGGU 8401 CGUAGCCG-U GCCA-----g aaca--acag u --|------( ---)------ 8701 -----gaacc |ccucg(-ca aacga)cg-a ggau-----u caa|gcggag ugccguaagu 8761 ug-uagagaa u-----(auu uc-------- ---------- ---------- ---------- 8821 ----)----- auucgauc-u uc-|uaaggc u|a----cuc u--agc-u-u gg--cgg-uu 8881 cuc--|---- ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Chi.thummi 9262 bp RNA RNA 16-AUG-1994 DEFINITION Chironomus thummi.; 28S ribosomal RNA; 28S rRNA. ACCESSION X80912 KEYWORDS 28S ribosomal RNA; 28S rRNA. SOURCE Chironomus thummi. ORGANISM Chironomus thummi. REFERENCE 1 (bases 1 to 1086) AUTHORS Gorab,E., de Lacoba,M.G. and Botella,L.M. JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1086) AUTHORS Gorab,E. TITLE Direct Submission JOURNAL Submitted (11-AUG-1994) to the EMBL/GenBank/DDBJ databases. E. Gorab, Centro de Investigaciones Biologicas, (C.S.I.C.), Velazquez 144, 28006 Madrid, SPAIN STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X80912 NCBI gi: 531403 BASE COUNT 319 a 197 c 269 g 301 t 8176 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~--~~|~~( ~~~~)~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 901 ~~~~~~~~~~ ~~~-~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 --|~(~~~)~ |~~~~-(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~----~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~-~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~-~(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~-------- --------~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~------ ---------- ---------- --------~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~cg 3061 ggguauuuuc au---caaca uaug------ ---------- ---------- (cuug)--ca 3121 uaugg--aaa auau------ --------ac c]-------- ---------A UGAGCACACa 3181 cUGG-AUACG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AU|C-AGGUC GAAGUCAGGG 3241 (GAAA----- -----)CCCU GAU-GGAGGA CCG-AA---G CA-GUUCU-A (CGUGCAAA) 3301 UCG-A-UUGU CAGAAUUGGG CAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CC AAU-CGAACC AUCUAGUAGC UGGUUCCUUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-ugga -gcau--|-- -|-agaaaag uuguauu--- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------gc 3661 uaacuCAUAC -C|UGG--UA AA-GCGAAUG AUUAGAGGC- -----cUUAG GAACC-(gaa 3721 a-u)--GUUC U-UAA-|CCU AUUC-UCAAA CUUUA-AAUG |GGUAUGuaa -gucaacau( 3781 gcuugauug) aug-uugacc auuag----- ------cuua cguucuuau- -(gaac)--g 3841 uagcacguaa g--------- -----auugu a|uc-g-cgc -AGU--GGCC AAGU-UUUG( 3901 G-UAAG)CAG AAC-UGGU-G CUGCGG(GA- UGAA)CCG-- AACACAU--- UGUUAA---G 3961 C|GCCC-aaa u-AA-AC-GA CGCAUcuauc --------ga uaccau---- -GAAAGGUGU 4021 U--GAUUGCU GAAGACA-GC AGGACGGUGG AC(AUGG-AA GUU)GUCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAGCAAUU AGC|CC-UUA AAA--UGGAU 4141 G--GCG-CU- CAagucguu| u|-------- --gccgau-- --aca-ugu| (- -----)-auc uuaac-gAGU AGGA------ 4441 --AGG|-AUA UU-AU-GG-- --------u- -aug-cguag guauuuaagc gua-gguauu 4501 uaagc(gua- -)guuaaua- ugg|aggcg| U--CCAUAAG GCACaggaau cu-ggu|GG- 4561 UAGUAGCAAA -UAUUCGAA- u(gagaguuc ---------- ---------- ---------- 4621 --)uuagguu |gccuuaagu g-gag|aa-g uuu|ugcguu ca-aca(ggc agu)ug|gac 4681 acgaguuagu |ucaguUCCU AAGC------ -(----)--- 4921 ----GC-GAA AGGGA-AU-A CGG(UUCCAA UU-)ccgua| -ac----cua u-ugaguaua 4981 cg[u------ ------uugu ugcccgaaac uc-----c-- -c---~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~(~~~~~)~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~----~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~-~~~~~ ---~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ----~~~~~~ ~~~----~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~-~~~ ~|~~~~~--~ 6661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~-~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 (~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-->(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ -~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(- -~~~~~~~~~ ~~~-)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~-)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~--~~~-~~~ ~~~-~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Simuliu.sp 9262 bp RNA RNA 11-JAN-191 DEFINITION Simulium sp. ACCESSION No information KEYWORDS No information. SOURCE Simulium sp. ORGANISM Simulium sp. REFERENCE 1 (bases 1 to 1086) AUTHORS Pawlowski,J., Szadziewski,R., Kmieciak,D., Fahrni,J. and Bittar,G. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X89646 LOCUS SS28SRRNA 1060 bp DNA INV 20-JUL-1995 DEFINITION Simulium sp. DNA for 28S ribosomal RNA gene. ACCESSION X89646 NID g908910 KEYWORDS 28S ribosomal RNA; 28S rRNA gene. SOURCE Simulium sp.. ORGANISM Simulium sp. Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicomorpha; Culicoidea; Simuliidae; Simulium. REFERENCE 1 (bases 1 to 1060) AUTHORS Pawlowski,J., Szadziewski,R., Kmieciak,D., Fahrni,J. and Bittar,G. TITLE Phylogeny of Mosquitoes and related families (Diptera: Culicomorpha) based on the 28S rDNA sequence data JOURNAL Unpublished REFERENCE 2 (bases 1 to 1060) AUTHORS Pawlowski,J. TITLE Direct Submission JOURNAL Submitted (13-JUL-1995) to the EMBL/GenBank/DDBJ databases. J. Pawlowski, University of Geneva, Dept of Zoology & Animal Biology, 154 route de Malagnou, CH-1224 Chene-Bougeries, SWITZERLAND COMMENT NCBI gi: 908910 FEATURES Location/Qualifiers source 1..1060 /organism="Simulium sp." /dev_stage="adult" /sex="female" /clone="CUL11.11" rRNA <1..>1060 /gene="28S rRNA" /note="fragment including divergent domains D4-D7" /product="28S ribosomal RNA" BASE COUNT 316 a 178 c 242 g 324 t ORIGIN BASE COUNT 316 a 178 c 242 g 324 t 8202 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~--~~|~~( ~~~~)~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 901 ~~~~~~~~~~ ~~~-~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 --|~(~~~)~ |~~~~-(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~----~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~-~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~-~(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~-------- --------~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~------ ---------- ---------- --------~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~]~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~----- ----~)~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~-- 3361 --~)~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGU -GCAu--|-- -|auaccguu ucauaaacuu ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------aa 3661 uaaauCUUAU -C|UGG--UA AA-GCGAAUG AUUAGAGGC- -----aUUAG GUUC--(gaa 3721 a-c)--GUUC U-UAA-|CCU AUUC-UCAAA CUAUA-AAUG |GGUACGaua -uaugaguu- 3781 ucuugauug- aacucuuauu ucacgcuuuu agcguaccau aucaaacauu ---------u 3841 auuacauguu uguaauuugg uuuagauuua u|ug-ugccc -AGU-GGGCC AAGU-UUUG( 3901 G-UAAG)CAG AAC-UGGU-G CUGUGG(GA- UGAA)CCA-- AUCGUGA--- UGAUAAG--G 3961 C|GCCUaaaa u-AA-AC-GA Cacaccuu-- ------a-g- -accau---- -AAAAGAUGU 4021 U--GAUUGCU GAAGACA-GC AGGACGGUGG AC(AUGG-AA GUU)GUCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAGCAAUU AGC|UC-UGA AAA--UUGAU 4141 G--GCG-CU- CUAGUCGUU| U|-------- --GCCGAU-- --UCAUCAC| (- -----)-guu uuagu-aAGU AGGA------ 4441 --GGG|-UC- UG-AU-GG-- --------U- -GUG-CGU-- U------GAA GUGC------ 4501 CAACC(GUAA -)GGUGGUA- UGG|A-GCC| G--CCAUUA- GCAC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA aUAUUCuaa- u(gagau--- ---------- ---------- ---------- 4621 --)cucgGAU |GACUGAAGU G-GAG|AAGG GUU|UCAUGU CA-ACA(-GC AGU)UG|AAC 4681 AUGAGUUAGU |-CGG-UCCU AAGC------ -(----)--- 4921 ----GC-GAA AGGGA-AU-C CGG(UUACAA UU-)CCGGA| -AC----cug u-ugaguaua 4981 cg[uuugcau uaug--ugac c--------- ---------- --gcuaca(u uua----)-u 5041 gua-g--guu auccauuaug ua-----ucu cg(gcaa-)c gagaauc-c] -a--auauaa 5101 agaa-----g cua--ucggg au-g-uaac- -AA-AAGA(G UUUUCUUU-) UCUGUU-|UU 5161 A-caguug-- --------ua cgc|a---CC AUGG--AAGU ----CU(UUC AU-)AGAGA- 5221 GA-UA-UGG- uguaa----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- --------u- ----aggc-u gGU-----AG 5341 AGCAUGGCA( -uucagu-)U GCUGUGUU-g uuac-----a -ucucc--uu agaC-CUUGA 5401 AAA-u-uaua -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------u -uggguca-- ---------- ----cgcaaa cu~~~~~~-- ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~-~~~ ~|~~~(~--~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~-~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-->(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ -~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(- -~~~~~~~~~ ~~~-)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~-)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS And.larvat 9262 bp RNA RNA 11-JAN-191 DEFINITION Androprosopa larvata. ACCESSION No information KEYWORDS No information. SOURCE Androprosopa larvata. ORGANISM Androprosopa larvata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X89647 LOCUS AL28SRRNA 1083 bp DNA INV 20-JUL-1995 DEFINITION A.larvata DNA for 28S ribosomal RNA gene. ACCESSION X89647 NID g908810 KEYWORDS 28S ribosomal RNA; 28S rRNA gene. SOURCE Androprosopa larvata. ORGANISM Androprosopa larvata Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicomorpha; Thaumaleidae; Androprosopa. REFERENCE 1 (bases 1 to 1083) AUTHORS Pawlowski,J., Szadziewski,R., Kmieciak,D., Fahrni,J. and Bittar,G. TITLE Phylogeny of Mosquitoes and related families (Diptera: Culicomorpha) based on the 28S rDNA sequence data JOURNAL Unpublished REFERENCE 2 (bases 1 to 1083) AUTHORS Pawlowski,J. TITLE Direct Submission JOURNAL Submitted (13-JUL-1995) to the EMBL/GenBank/DDBJ databases. J. Pawlowski, University of Geneva, Dept of Zoology & Animal Biology, 154 route de Malagnou, CH-1224 Chene-Bougeries, SWITZERLAND COMMENT NCBI gi: 908810 FEATURES Location/Qualifiers source 1..1083 /organism="Androprosopa larvata" /dev_stage="larva" /clone="CUL13.21" rRNA <1..>1083 /gene="28S rRNA" /note="fragment including divergent domains D4-D7" /product="28S ribosomal RNA" BASE COUNT 332 a 183 c 241 g 327 t ORIGIN BASE COUNT 332 a 183 c 241 g 327 t 8179 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~--~~|~~( ~~~~)~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 901 ~~~~~~~~~~ ~~~-~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 --|~(~~~)~ |~~~~-(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~----~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~-~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~-~(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~-------- --------~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~------ ---------- ---------- --------~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~]~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~----- ----~)~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~-- 3361 --~)~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGC -ACUa--|-- -|-uagccgu ugaauucuu- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------aa 3661 uaaauCUUAU -C|UGG--UA AA-GCGAAUG AUUAGAGGC- -----aUUAG GUUC--(gaa 3721 a-c)--GUUC U-UAA-|CCU AUUC-UCAAA CUAUA-AAUG |GGUACGaaa -aaugaguu- 3781 gcuugauug- aacucauugu ------uuga cuaguacuuc auca-----u ---------g 3841 uca--u-gug -auguuguga -aagauuugc u|ug-ugcuu -AGU-GGGCC AAGU-UUUG( 3901 G-UAAG)CAG AAC-UGGU-G CUGUGG(GA- UGAA)CCA-- AUCGUAA--- UGUUAAG--G 3961 C|GCCC-aaa u-A--Au-ga cucaccuu-- ------a-ga caccau---- -GAAAGAUGU 4021 U--GAUUGCU GAAGACA-GC AGGACGGUGG AC(AUGG-AA GUU)GUCAUC CG|C(UAA)G 4081 |AAGUGU(GU AACA)AC|-- -UUACCUGCC -GAAGCAAUU AAC|UC-UUA AAA--UGGAU 4141 G--GCG-CU- CAAGUCAUU| U|-------- --GCCGAU-- --ACAUUAC| (- -----)-gua uuagu-aAGU AGGA------ 4441 --GGG|-UC- UA-GU-GG-- --------U- -GUG-CUU-- U------GAA GUGU------ 4501 UAACC(GUGA -)GGUAGCA- UGG|A-GCC| G--CCAUUG- GCAC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCuaa- u(gagau--- ---------- ---------- ---------- 4621 --)cuugGAU |GACUGAAGU G-GAG|AAGG GUU|UCUUGU CA-ACA(-GC AGU)UG|UAC 4681 AAGAGUUAGU |-CAG-UCCU AAGC------ -(----)--- 4921 ----GC-GAA AGGGA-AU-C AGG(UUACAA UU-)CCUGA| -AC----cua u-ugaguaua 4981 cg[uuugcau uaug--ugac cgucucuccu ca-----u-- -a---ucaug ugugugugag 5041 acugauauca uaaugua--- -------ucu ug(gcaa-)c aagaagg--] cua-auauag 5101 agau-----g cua--ucggg ag-g-uaau- -AA-AAGA(G UUUUCUUU-) UCUGUU-|UU 5161 A-caauua-- ucacccccca cau|a---CC AUGG--AAGU ----CU(UUC AU-)AGAGA- 5221 GA-UA-UGG- uauaa----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- --------u- ----agau-u gGU-----AG 5341 AGCAUGGCA( -uucagu-)U GCUGUGUU-a uuac-u---c -ucucc--uu agaC-CUUGA 5401 AA--ucuaua -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------u aaggg-ua-- ---------- ----cgcaaa cu~~~~~~-- ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~-~~~ ~|~~~(~--~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~-~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-->(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ -~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(- -~~~~~~~~~ ~~~-)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~-)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Cha.crysta 9262 bp RNA RNA 11-JAN-191 DEFINITION Chaoborus crystallinus. ACCESSION No information KEYWORDS No information. SOURCE Chaoborus crystallinus. ORGANISM Chaoborus crystallinus. REFERENCE 1 (bases 1 to 1086) AUTHORS Pawlowski,J., Szadziewski,R., Kmieciak,D., Fahrni,J. and Bittar,G. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X89644 LOCUS CC28SRRNA 1029 bp DNA INV 20-JUL-1995 DEFINITION C.crystallinus DNA for 28S ribosomal RNA gene. ACCESSION X89644 NID g908826 KEYWORDS 28S ribosomal RNA; 28S rRNA gene. SOURCE Chaoborus crystallinus. ORGANISM Chaoborus crystallinus Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicomorpha; Chaoboridae; Chaoborus. REFERENCE 1 (bases 1 to 1029) AUTHORS Pawlowski,J., Szadziewski,R., Kmieciak,D., Fahrni,J. and Bittar,G. TITLE Phylogeny of Mosquitoes and related families (Diptera: Culicomorpha) based on the 28S rDNA sequence data JOURNAL Unpublished REFERENCE 2 (bases 1 to 1029) AUTHORS Pawlowski,J. TITLE Direct Submission JOURNAL Submitted (13-JUL-1995) to the EMBL/GenBank/DDBJ databases. J. Pawlowski, University of Geneva, Dept of Zoology & Animal Biology, 154 route de Malagnou, CH-1224 Chene-Bougeries, SWITZERLAND COMMENT NCBI gi: 908826 FEATURES Location/Qualifiers source 1..1029 /organism="Chaoborus crystallinus" /dev_stage="adult" /sex="female" /clone="CUL9.2" rRNA <1..>1029 /gene="28S rRNA" /note="fragment including divergent domains D4-D7" /product="28S ribosomal RNA" BASE COUNT 322 a 151 c 231 g 325 t ORIGIN BASE COUNT 322 a 151 c 231 g 325 t 8233 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~--~~|~~( ~~~~)~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 901 ~~~~~~~~~~ ~~~-~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 --|~(~~~)~ |~~~~-(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~----~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~-~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~-~(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~-------- --------~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~------ ---------- ---------- --------~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~]~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~----- ----~)~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~-- 3361 --~)~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGA -GCAu--|-- -|-auaaaau uuugaa---- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------u- 3661 uuauuCUUGU -C|UGG--UA AA-GCGAAUG AUUAGAGGC- -----cUUAG GUUC--(gaa 3721 a-u)--GAUC U-UAA-|CCU AUUC-UCAAA CUAUA-AAUG |GGUACGuua -cauaacau( 3781 gcuuuaaug) auguuauug- ---------- -------uua uaaugaaaa- -(uuua)--u 3841 uuucauuuag uaa------- -aagauauau a|ug-ugcuu -AGU-GGGCC AAGU-UUUG( 3901 G-UAAG)CAG AAC-UGGU-G CUGUGG(GA- UGAA)CCA-- AACGCUA--- UGUUAAG--G 3961 C|GCCC-aag u-AA-AU-GA CGUAAcac-- ------a-ga uaccau---- -GAAAGAUGU 4021 U--GAUUGCU AAAGACA-GC AGGACGGUGG AC(AUGG-AA GUU)GUCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAGCAAUU AGC|UC-UUA AAA--UGGAU 4141 G--GCG-CU- UAAGUCAUU| C|-------- --GCCUAU-- --ACAUGGC| (- -----)-aua acaac-gAGU AGGA------ 4441 --GGG|-UC- UG-AU-GA-- --------U- -GUG-CAU-- U------GAA GUGU-----U 4501 U-AGC(GUAA -)GCUGGCA- UGG|A-GCC| A--UCAUUA- GCAC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCgaa- u(gagauc-- ---------- ---------- ---------- 4621 --)cuugGAU |GACUGAAGU G-GAG|GAGG GUU|UCGUGU CA-ACA(-GC AGU)UG|AAC 4681 ACGAGUUAGC |-CAG-UCCU AAGC------ -(----)--- 4921 ----GC-GAA AGGGA-AU-C CGG(UUACAA UU-)CCGGA| -GC----cug u-ugaguaua 4981 cg[uuugcau ag-------- -------uug uu-------- --uaauua(u uuaau--)ua 5041 auugcaauuu auguaa---- -------uca ug(guaa-)c augaauc-c] uuu-ucuuug 5101 agaa-----g uca--auagg au-g-uauc- -GG-AAGA(G UUUUCUUU-) UCUGUU-|UA 5161 A-caauca-- --------ua cua|a---CC AUGG--AAGU ----CU(UUC AU-)AGAGA- 5221 GA-UA-UGG- uugga----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- --------c- ----agau-u gGU-----AG 5341 AGCAUGGCA( -uuaaau-)U GCUGUGUC-g auac-a---c -ucuu---uu gaaC-CUUGA 5401 AAA-ucaaag -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------a cuggggca-- ---------- ----cgcaaa cu~~~~~~-- ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~-~~~ ~|~~~(~--~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~-~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-->(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ -~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(- -~~~~~~~~~ ~~~-)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~-)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Corethr.sp 9262 bp RNA RNA 11-JAN-191 DEFINITION Corethrella sp.. ACCESSION No information KEYWORDS No information. SOURCE Corethrella sp. ORGANISM Corethrella sp. REFERENCE 1 (bases 1 to 1086) AUTHORS Pawlowski,J., Szadziewski,R., Kmieciak,D., Fahrni,J. and Bittar,G. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X89645 LOCUS CS28SRRNA 1017 bp DNA INV 20-JUL-1995 DEFINITION Corethrella sp. DNA for 28S ribosomal RNA gene. ACCESSION X89645 NID g914844 KEYWORDS 28S ribosomal RNA; 28S rRNA gene. SOURCE Corethrella sp.. ORGANISM Corethrella sp. Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicomorpha; Chaoboridae; Corethrella. REFERENCE 1 (bases 1 to 1017) AUTHORS Pawlowski,J., Szadziewski,R., Kmieciak,D., Fahrni,J. and Bittar,G. TITLE Phylogeny of Mosquitoes and related families (Diptera: Culicomorpha) based on the 28S rDNA sequence data JOURNAL Unpublished REFERENCE 2 (bases 1 to 1017) AUTHORS Pawlowski,J. TITLE Direct Submission JOURNAL Submitted (13-JUL-1995) to the EMBL/GenBank/DDBJ databases. J. Pawlowski, University of Geneva, Dept of Zoology & Animal Biology, 154 route de Malagnou, CH-1224 Chene-Bougeries, SWITZERLAND COMMENT NCBI gi: 914844 FEATURES Location/Qualifiers source 1..1017 /organism="Corethrella sp." /dev_stage="adult" /sex="female" /clone="CUL17.1" rRNA <1..>1017 /gene="28S rRNA" /note="fragment including divergent domains D4-D7" /product="28S ribosomal RNA" BASE COUNT 343 a 140 c 212 g 322 t ORIGIN BASE COUNT 343 a 140 c 212 g 322 t 8245 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~--~~|~~( ~~~~)~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 901 ~~~~~~~~~~ ~~~-~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 --|~(~~~)~ |~~~~-(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~----~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~-~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~-~(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~-------- --------~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~------ ---------- ---------- --------~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~]~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~----- ----~)~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~-- 3361 --~)~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGA -GCAu--|-- -|aaaaacau uu-gaa---- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------ca 3661 uuauuCUUAU -C|UGG--UA AA-GCGAAUG AUUAGAGGC- -----aUUAG GUUC--(gaa 3721 a-u)--GAUC U-UAA-|CCU AUUC-UCAAA CUAUA-AAUG |GGUACGuaa -cauaacau- 3781 ucuugauug- auguuauuua ---------- ----cauaua uauu------ (uuuaaau)- 3841 aauauauaa- ---------- aagauauuaa a|ug-ugcuu -AGU-GGGCC AAGU-UUUG( 3901 G-UAAG)CAG AAC-UGGU-G CUGUGG(GA- UGAA)CCA-- AACAUAA--- UGUUAAG--G 3961 C|GCCU-aaa u-AA-AC-GA CGCAUcac-- ------a-ga uaccau---- -GAAAGGUGU 4021 U--GAUUGCU AAAGACA-GC AGGACGGUGG AC(AUGG-AA GUU)GUCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAGCAAUU AGC|CC-UUA AAA--UGGAU 4141 G--GCG-CU- UAAGUCGUU| U|-------- --GCCUAU-- --ACAUUAu| (- -----)-aug uggau-aAGU AGGA------ 4441 --GGG|-UA- UU-A--UG-- -------au- -a-g-cau-- u------GAA GUAU-----u 4501 u-aac(guaa -)guugaua- uga|A-GCU| A--UGAUAA- GCAC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCgaa- u(gagau--- ---------- ---------- ---------- 4621 --)cuugGAU |GACUGAAGU G-GAG|GAGG GUU|UCGUGU CA-ACA(-GC AGU)UG|AAC 4681 ACGAGUUAGC |-CAG-UCCU AAGC------ -(----)--- 4921 ----GC-GAA AGGGA-AU-C CGG(UUACAA UU-)CCGGA| -GC----cug u-ugaguaua 4981 cg[uuuaua- -aug------ ---------- ---------- -aaauuuu(u uuuuau-)ga 5041 aauuuuu-ua uuauaa---- -------uca ug(gcaa-)c gugaauc-c] uuu-ucuuug 5101 agaa-----g cca--acagg ag-a-uauc- -GA-AAGA(G UUUUCUUU-) UCUGUU-|UU 5161 A-caaucu-- uauaaauuaa uua|a---CC AUGG--AAGU ----CU(UUC AU-)AGAGA- 5221 GA-UA-UGG- uuaaa----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- --------c- ----agau-u gGU-----AG 5341 AGCAUGGCA( -uuaaau-)U GCUGUGUC-g auau-a---c -ucuuc--uu ggaC-CUUGA 5401 AAA-ucaaag -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------a cuggggca-- ---------- ----cgcaaa cu~~~~~~-- ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~-~~~ ~|~~~(~--~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~-~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-->(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ -~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(- -~~~~~~~~~ ~~~-)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~-)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Ano.maculi 9262 bp RNA RNA 11-JAN-191 DEFINITION Anopheles maculipennis. ACCESSION No information KEYWORDS No information. SOURCE Anopheles maculipennis. ORGANISM Anopheles maculipennis. REFERENCE 1 (bases 1 to 1086) AUTHORS Pawlowski,J., Szadziewski,R., Kmieciak,D., Fahrni,J. and Bittar,G. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X89643 LOCUS AM28SRRN1 1054 bp DNA INV 20-JUL-1995 DEFINITION A.maculipennis DNA for 28S ribosomal RNA gene. ACCESSION X89643 NID g908811 KEYWORDS 28S ribosomal RNA; 28S rRNA gene. SOURCE Anopheles maculipennis. ORGANISM Anopheles maculipennis Eukaryotae; mitochondrial eukaryotes; Metazoa; Arthropoda; Tracheata; Insecta; Pterygota; Diptera; Nematocera; Culicidae; Anopheles. REFERENCE 1 (bases 1 to 1054) AUTHORS Pawlowski,J., Szadziewski,R., Kmieciak,D., Fahrni,J. and Bittar,G. TITLE Phylogeny of Mosquitoes and related families (Diptera: Culicomorpha) based on the 28S rDNA sequence data JOURNAL Unpublished REFERENCE 2 (bases 1 to 1054) AUTHORS Pawlowski,J. TITLE Direct Submission JOURNAL Submitted (13-JUL-1995) to the EMBL/GenBank/DDBJ databases. J. Pawlowski, University of Geneva, Dept of Zoology & Animal Biology, 154 route de Malagnou, CH-1224 Chene-Bougeries, SWITZERLAND COMMENT NCBI gi: 908811 FEATURES Location/Qualifiers source 1..1054 /organism="Anopheles maculipennis" /dev_stage="adult" /sex="female" /clone="CUL3.24" rRNA <1..>1054 /gene="28S rRNA" /note="fragment including divergent domains D4-D7" /product="28S ribosomal RNA" BASE COUNT 270 a 229 c 297 g 258 t ORIGIN BASE COUNT 270 a 229 c 297 g 258 t 8208 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~--~~|~~( ~~~~)~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 901 ~~~~~~~~~~ ~~~-~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 --|~(~~~)~ |~~~~-(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~----~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~-~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~-~(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~-------- --------~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~------ ---------- ---------- --------~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~]~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~----- ----~)~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~-- 3361 --~)~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGA -GCAc--|-- -|-guaacau uucgaa---- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------cc 3661 uuauuCUUAU -C|UGG--UA AA-GCGAAUG AUUAGAGGC- -----cUUAG GUUC--(gaa 3721 a-u)--GAUC U-UAA-|CCU AUUC-UCAAA CUAUA-AAUG |GGUACGgga -uuggguag- 3781 caugcuuug- augaugcuac ccucaaaucg augagucgaa cggugcgccc gucgcccccc 3841 gggguggugg gaugcaccgg cuagauaucg g|ug-ugcuu -agu-GGGCC AAGU-UUUG( 3901 G-UAAG)CAG AAC-UGGU-G CUGU-G(GA- UGAA)CCA-- AACGCUA--- UGUUAAG--G 3961 C|GCC--aaa u-AA-AC-GA CGCAUcau-- ------a-ga uaccau---- -AAAAGGCGU 4021 U--GAUUGCU AAAGACA-GC AGGACGGUGG AC(AUGG-AA GUC)GUCAUC CG|C(UAA)G 4081 |GAGUGU(GU AAUA)AC|-- -UCACCUGCC -GAAGCAAUU AGC|CC-UGA AAA--CGGAU 4141 G--GCG-CU- UAAGUCGUU| U|-------- --GCCUAU-- --ACAUUGC| (- -----)-acc cuagu-gAGU AGGA------ 4441 --GGG|-UA- CG-GU-GG-- --------u- -g-G-CGU-- U------GAA GUGC-----u 4501 u-ggc(GCAA -)gcaA-CA- UGG|A-GCC| G--CCACCG- GCAC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCgaa- u(gagau--- ---------- ---------- ---------- 4621 --)cuugGAU |GACUGAAGU G-GAG|GAGG GUU|UCGUGU CA-ACA(-GC AGU)UG|AAC 4681 ACGAGUUAGC |-CAA-UCCU AAGC------ -(----)--- 4921 ----GC-GAA AGGGA-AU-C CGG(UUACAA UU-)CCGGA| -GC----cug u-ugaguaua 4981 cg[uuugucu ggcg------ ------uguu ---------- cgguuccc(- -uccg--)gg 5041 ggaucguacc gccuugcga- -------uca ug(gcaa-)c augaauc-c] uuu-ucuucg 5101 agaa-----g cca--acggg ag-g-uacu- -GG-AAGA(G UUUUCUUU-) UCUGUU-|UU 5161 A-caguca-- -------cca cug|a---CC AUGG--AAGU ----CU(UUC GU-)AGAGA- 5221 GA-UA-UGG- uugga----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- --------c- ----gcac-u gGU-----AG 5341 AGCAUGGUA( -uuaaau-)U GCUGUGUC-g guac-u---c -uccuc--uu ggaC-CGUGA 5401 AAA-ucgaag -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------a cuggggca-- ---------- ----cgcaaa cu~~~~~~-- ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~-~~~ ~|~~~(~--~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~-~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-->(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ -~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(- -~~~~~~~~~ ~~~-)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~-)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Ano.albima 9262 bp RNA RNA 10-MAY-1996 DEFINITION Anopheles albimanus. str. Teco; 18S ribosomal RNA; 5.8S ribosomal RNA; intergenic spacer; internal transcribed spacer 1; internal transcribed spacer 2. ACCESSION L78065 KEYWORDS 18S ribosomal RNA; 5.8S ribosomal RNA; intergenic spacer; internal transcribed spacer 1; internal transcribed spacer 2. SOURCE Anopheles albimanus. str. Teco. ORGANISM Anopheles albimanus. REFERENCE 1 (bases 1 to 8312) AUTHORS Collins,F.H. TITLE None JOURNAL Unpublished (1996) STANDARD No information COMMENTS Organism information Culture collection: CDC 1989 Sequence information (bases 1 to 9262) Corresponding GenBank entry: L78065 BASE COUNT 1008 a 1059 c 1196 g 924 t 5075 others ORIGIN 1 |--------- ---------- ---------- -----aACCC UAGGCAGGGG AUC|ACUCGG 61 |CUCAUGG|A U|-CGAUGAA GAC|CGCA(- -GCUA-AA)U |GC-GCGUCA GA-augu|[- 121 gaacugcagg acaca-ugaa ---------- ---------- ---------- -------]-- 181 ---------- ---------- ---caccg|A CACGUU-GAA Cg--(auauu )-g-c|gcau 241 ugc------a c(-------- ---------- ---------- -----gacuc a--)gu---- 301 --gc-gaugu ---acacauu -u-uu-gagu gcccac(--- ---auuc--/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -----aucaa )gugggccuc aaauaaug-u gUG----ACU 481 AC|CCCCUAA -A--UU|UA( AGCA)UA-UU AAUAAG-G-G G-AGGAAG-- --AGAAACU( 541 AAC-A)AG-G AU|UCCCUGA GU---AGC(U GCGA)GCG-A A-----ACGG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -----gcacg u--agggau- 781 gacgcg(aac ug-)gcgcgu cc-auccggu uccgugua-u uggagugguc guuaucugu- 841 ---cgccc-- ---------- ---------- ---------- ---------g gug---caaa 901 caguucaa-- --g-uuc-a( a-(cuugaau )g)uggcc-- ---------- -auucgcuCC 961 --|C(AUA)G |AGGG-(UGA UAGG)-CCCG UA|--gaacg gcacggacgg g-----cgu- 1021 -------gca gaaggccg-c uccaug---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGUGUU GCU(----UG 1141 AUAG)UGCAG CACUAA---- GUGGGA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAACUC-- ---------- ---------- ---------- )CUU-CUAAA GCU----AAA 1381 UA-------- ---------- UCACC-AUGA GACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGUUG -AAA-AGCAC UCU(ga-au- )AGAG-AGUC A-AAGAGUAC G-UGAAAC-U 1501 GCCUA-GGG< gu-gcaaacc cguuga-acu caauua|u-c cgagcggcga uauuca-ccu 1561 gug------- cgguc(accc -)ggcc-g-- --------cc agg-gcacuu aucgcucgca 1621 gugugc---- gga|caucgc gauccauuac gaaugcgccc cuggccauuc cagcacccgg 1681 ucccuggcuc guguugucga ccuccucgcg ggugccuuag ccggcgccuu gcguacgggg 1741 gacugguucc uucccgguuc cgacucgacc gagcguggug ugccgcugga agcgugaugg 1801 acucacaguc gcggugggca gacggua--- gcguaugcug cggcauauac cggcaccuag 1861 ccaugggcca ccgucucucu cccgaucggc gau------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ------gcau 2521 caa---cc-- --------ug aau-ugagg- uaccuucggg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGA-AGUC UAUCUUGCGC GCGAGCCa-a ugggc----- agauc-gagc 2641 ucucgaaa-- ---------- -----ccca- ---------- --aaGGCGCA GA(AAAC)AC 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------a cgcaucggcg ggauuac-gg guguacu--g 2941 c--------- ---------- ---------- ---------- ---------- ---------g 3001 gcggucc--( ----uucg-- ----)-cggg auccguucau -ggucgcccc -uccaucccc 3061 gggugucgca cc---aacag aga------- ------cccu cgg(cuug)c ugggggaccc 3121 ucug---gcg acau------ --------ac u]-------- ---------G UGAGCGCGC- 3181 -AGG-AUGUG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AU|C-AGGUU GAAGUCAGGG 3241 (GAAA----- -----)CCCU GAU-GGAGGA CCG-AA---G CA-AUUCUGA (CGUGCAAA) 3301 UCG-A-UUGU CAGAGUUGGG CAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CC AAAUCGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGA -GCAc--|-- -|-gcaacgu uucgag---- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------cc 3661 uuauuCUUAU -C|UGG--UA AA-GCGAAUG AUUAGAGGC- -----cUUAG GUUC--(gaa 3721 a-u)--GAUC U-UAA-|CCU AUUC-UCAAA CUAUA-AAUG |GGUACGaga -ugggguag( 3781 cauucuuca) cugaugcuac ccucc--gag ugaugcaggu ggcgccccu- -(ucac)--- 3841 --gggggcgc cagcuagaua uc---g---- g|ug-ugcuu -AGU-GGGCC AAGU-UUUG( 3901 G-UAAG)CAG AAC-UGGU-G CUGUGG(GA- UGAA)CCA-- AACGUAA--- UGUUACG--G 3961 C|GCCc-aaa u-AA-AC-GA CGCAUccu-- ------a-ga uaccau---- -GAAAGGUGU 4021 U--GAUUGCU AAAGACA-GC AGGACGGUGG AC(AUGG-AA GUU)GUCACC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAGCAAUU AGC|CC-UUA AAA--UGGAU 4141 G--GCG-CU- CAAGUCGUU| U|-------- --GCCUAU-- --ACAUUAC| (- -----)-acc uuagc-gAGU AGGA------ 4441 --GGG|-UA- CG-GU-GG-- --------U- -GCG-CGU-- C------GAA GUGC-----u 4501 u-GGC(GUAA -)GCCGACA- UGG|A-GCC| G--CCACUG- GCAC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCGAA- u(gagau--- ---------- ---------- ---------- 4621 --)cuugGAU |GACUGAAGU G-GAG|GAGG GUU|UCGUGU CA-ACA(-GC AGU)UG|AAC 4681 ACGAGUUAGC |-CAA-UCCU AAGC------ -(----)--- 4921 ----GC-GAA AGGGA-AU-C CGG(UUACGA UU-)CCGGA| -GC----cug u-ugaguaua 4981 cg[u------ ------uuga cu-ggccgag -------u-- ----gcgg(- -uucgu-)cc 5041 gcg-cggccg gugcaa---- -------uca ug(gcaa-)c augaauc-c] uuu-ucuucg 5101 agaa-----g cca--acgag ag-g-uauc- -GG-AAGA(G UUUUCUUU-) UCUGUU-|UA 5161 A-cagccuuc -----acuca ccg|a---CC AUGG--AAGU ----CU(UUC AU-)AGAGA- 5221 GA-UA-UGG- uugga----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- --------c- ----gcgc-u gGU-----AG 5341 AGCAUGGUA( -uuaaac-)U GCUGUGUC-g auac-u---c -ucuuc--uu ggaC-CGUGA 5401 AAA-ucgaag -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------a cuggggca-- ---------- ----cgcaaa cu-c-uca-- ac-agcUUGU 5581 A|CC--ga-A UCC(GCAGCA )GG|UCU-CC AAGGU(GCAG A)GUCUCU-| AGUCG-||A- 5641 UA-G--AUCA AU-GUAG-GU A-AGGGAAGU CGGCAA-ACU -AGAUCCGUA AC(UUCG)GG 5701 ACAAGGAUU| GGCUCUGAA- ---------- -(-----)---- -------UUC AGAACU|G(- --GCA)CGG- 6601 CUGAGGGAAU C|-CGACUGU CU(AAUUA)A AACAAAGCAU UGUG|A--UG G|CCG(---- 6661 caac)CGG-- ---------- --U-GCUGAC ACAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---cgugaa- ----(gaaa) -----uucaa ----GCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC UCUGU-CCCU AUCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGAA -A-CAC-UAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCC G---GCA-UU |GUAAGGCGA UAUAAGAGGU 7021 GCAGcAUAGG UGGGAGac-- ---------- --<------- ---------- ---cggguaa 7081 (--aaca--- )uuaucucuc ---------- ---------- ------->(- -----)---- 7141 -------ggu ucGCCAAUGA GA-UACCACC |ACUCUUAC- -UGUUG-CCU UACUUAc--- 7201 ------(--- --)------| --g GACAU-UGCC A-GGUG-CGG AG-UUUGACU G(GGG)CGGU 7561 A-C|AUCUCC (AAAACGAUA AC-)GGAG-G U|G|U|CCA- AAGGU-CAGC |UCAGU-GUG 7621 -G(ACA---- GAAA)CCACA CGCUGA|GC( A|U--AAGG) ACAAAAG-CU G-GCUUGAUC 7681 -UCGACGU(u c--aguac-- )GCAUCGGGA CAGC(-GAAA )GCUUGG|CC --UUA|CGA- 7741 UCCUUUUG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -GUUGUAA(- -AGAG-U--U U---)----- ---------- 7861 -----UUA|G CAAGAG-GUG UC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCCGCCAAGC G(UUCAU)AG CGACGUGGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -AA-)AUUCA CAAA-GCGU| AGGAU(UGUU C)ACCCUUU- 8041 CAAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GGUGU-G<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- --cgcagacg ugga>aguGC UG-UC-UA-A -CGGAAUUCC UGUG(CAGUA 8281 C(GAGA)GGA AC-)CACAGG U|ACGGACCG CUGGCUCA-A UAC|-UAGUU C(GACC)GGA 8341 CUUUGGUAUA A-CGCUAC-- GU-UCGC--C GGAUUAUGCC U(GAACGCCU C-U-A)AGGU 8401 CGUAGCCG-A ACCG-----a gccG--ACAG U --|------( ---)------ 8701 -----agacc |accua(-ca aacga)ua-g guuu-----a cag|gcuggg ggcugcacgu 8761 ug-cagagag gu----(uuc c--------- ---------- ---------- ---------- 8821 ----)----a uuucgauc-c uc-|ucaggc u|a----ccc a--ugc-u-u gg--cgg-uu 8881 aug--|---- ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS A.albopict 9262 bp RNA RNA 11-JAN-191 DEFINITION Aedes albopictus. ACCESSION No information KEYWORDS No information. SOURCE Aedes albopictus. ORGANISM Aedes albopictus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L22060 LOCUS MQSRNAGN 5298 bp ds-DNA INV 22-JUL-1993 DEFINITION Aedes albopictus 18S, 8S, 28S ribosomal RNA genes. ACCESSION L22060 KEYWORDS 18S ribosomal RNA; 28S ribosomal RNA; 8S ribosomal RNA. SOURCE Aedes albopictus DNA. ORGANISM Aedes albopictus Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicoidea; Culicidae. REFERENCE 1 (bases 1 to 5298) AUTHORS Kjer,K.M., Baldridge,G.D. and Fallon,A.M. TITLE Mosquito large subunit ribosomal RNA: simultaneous alignment of primary and secondary structure JOURNAL Biochim. Biophys. Acta (1994) In press FEATURES Location/Qualifiers rRNA 1..232 /product="18S ribosomal RNA" misc_RNA 233..662 /standard_name="ITS1" rRNA 663..771 /product="8S ribosomal RNA" misc_RNA 772..1196 /standard_name="ITS2" rRNA 1197..5298 /product="28S ribosomal RNA" source 1..5298 /organism="Aedes albopictus" /cell_line="C710" /sequenced_mol="DNA" BASE COUNT 1303 a 1302 c 1477 g 1216 t ORIGIN BASE COUNT 1074 a 1029 c 1172 g 987 t 5000 others ORIGIN 1 |--------- ---------- ---------- ----aaACCC UAGGCAGGGG AUC|ACUCGG 61 |CUCGUGG|A U|-CGAUGAA GAC|CGCA(- -GCUA-AA)U |GC-GCGUCA GA-augu|[- 121 gaacugcagg acaca-ugaa ---------- ---------- ---------- -------]-- 181 ---------- ---------- ---caccg|A CACGUU-GAA Cgc-(auauu )-g-c|acau 241 cgu------a c(-------- ---------- ---------- ------cucc a--)gu---- 301 --ac-gaugu ---acacauu -u-uu-gagu gccuau(--- ---auuu--/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -----uauca )guaggccuc aaauaaug-u gUG----ACU 481 AC|CCCCUAA -A--UU|UA( AGCA)UA-UU AAUAAG-G-G G-AGGAAA-- --AGAAACU( 541 AAC-A)AG-G AU|UCCCUGA GU---AGC(U GCGA)GCG-A A-----ACGG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -----gcacg c--aggggc- 781 gaugca(cug g--)-uguau cu-gcccggu uccgugua-c uggagaguuc guuaucugc- 841 ---guaac-- ---------- ---------- ---------- ---------- cgg---ucgc 901 ugguucaa-- --g-uuc-a( a-(cuagaau )g)ugg-c-- ---------- -uuuuacuCC 961 --|C(AGA)G |AGGG-(UGA UAGG)-CCCG UA|--gagcg gcgcaccgau g-----gua- 1021 ---------- gaagaucu-u uccaug---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGUGUU GCU(----UG 1141 AUAG)UGCAG CACAAA---- GUGGGA-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAACUC-- ---------- ---------- ---------- )CUU-CUAAA GCU----AAA 1381 UA-------- ---------- UCACC-ACGA GACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G--AAAGUUG -AAA-AGCAC UCU(ga-au- )AGAG-AGUC A-AAAAGUAC G-UGAAAC-U 1501 GCCUA-GGG< cu--caagcc cguuga-acu cgauua|u-c cgagcggaga cauuca-ccu 1561 gc----gguu ggccg(gcga -)cggcac-g gc-c----gc agg-gcacuu gucucucgca 1621 cuagccaaga gga|cacugc gauccauuac gaaacagcuu ucgcgcaagc gcaaggucgc 1681 ccgacaacug cccccuggug cugguugcuu gccccacagu agcgacgcuc aguucugaag 1741 gccugugccg cgaggugggg cuuacugcac gugguguucu agcagucggg cgcgugaugg 1801 a----uuccc ccggacaccg ggugguc--- uucccguaag gggccaccgg acugu----c 1861 gauc------ ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ------ggca 2521 gug---aa-- --------ag aau-cgagg- uaccuucggg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGA-AGUC UAUCUUGCGC GCGAGCCa-a ugguc----( guccu-ccgg 2641 ag)------- ---------- ---c-acca- ---------- --aaGGCGCA GA(AAAC)AU 2701 AA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- -------cuu gaguugugcg ggauuac-gg gcgcggc--- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----ucucu- ----)----- ---------- -gcucguccc -uccaucccc 3061 ggguguugua au---cggca ug-cggcuac cgggaccaag gcuucacggc ccccggcacc 3121 gugcc--aca acau------ --------ac c]-------- ---------G UGAGUGUGC- 3181 -AGG-AUGUG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AU|C-AGGUU GAAGUCAGGG 3241 (GAAA----- -----)CCCU GAU-GGAGGA CCG-AA---G CA-GUUCUGA (CGUGCAAA) 3301 UCG-A-UUGU CAGAAUUGGG CAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CC AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGA -GCAc--|-- -|-gcaacgu uucgaa---- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------uc 3661 cuauuCUUAU -C|UGG--UA AA-GCGAAUG AUUAGAGGC- -----cUUAG GUUC--(gaa 3721 a-u)--GAUC U-UAA-|CCU AUUC-UCAAA CUAUA-AAUG |GGUACGuac -cauagcau( 3781 ucuugcaug) augcuguug- -ca---aacg uugguaaacg ccgggccguc cccugucagg 3841 gcgugccacg gcgua----- gaagauaucu g|ug-ugcuu -AGU-GGGCC AAGU-UUUG( 3901 G-UAAG)CAG AAC-UGGU-G CUGUGG(GA- UGAA)CCA-- AACGUAA--- UGUUACG--G 3961 C|GCCU-aaa u-AA-AC-GA CGCAUcau-- ------a-ga uaccau---- -GAAAGGUGU 4021 U--GAUUGCU ACAGACA-GC AGGACGGUGG AC(AUGG-AA GUU)GUCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAGCAAUU AGC|CC-UUA AAA--UGGAU 4141 G--GCG-CU- UAAGUCGUU| U|-------- --GCCUAU-- --ACAUUAC| (- -----)--gc gccac-gAGU AGGA------ 4441 --GGG|-UC- UG-GU-GG-- --------U- -GUG-CGU-- U------GAA GUGC-----C 4501 U-GGC(GUAA -)GCCGACA- UGG|A-GCC| G--CCACUA- GCAC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCGAA- u(gagau--- ---------- ---------- ---------- 4621 --)cuugGAU |GACUGAAGU G-GAG|GAGG GUU|UCGUGU CA-ACA(-GC AGU)UG|AAC 4681 ACGAGUUAGC |-CAA-UCCU AAGC------ -(----)--- 4921 ----GC-GAA AGGGA-AU-C CGG(UUACAA UU-)CCGGA| -GC----cug u-uggguaua 4981 cg[u------ ------uugc auuggcgucc ca-----u-- ----accg(- -gcaa--)cg 5041 gua-gcgccu uuguaa---- -------uca ug(gcaa-)c augaauc-c] uuu-ucuucg 5101 agaa-----g cca--acaag ag-a-uauc- -GG-AAGA(G UUCUCUUU-) UCUGUU-|UU 5161 A-caguca-- --------ca cua|g---CC AUGG--AAGU ----CU(UUC AU-)AGAGA- 5221 GA-UA-UGG- uugga----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- --------c- ----aggc-u gGU-----AG 5341 AGCAUGGUA( -uuaaau-)U GCUGUGUC-g auau-u---c -ucuuc--uu ggaC-CUUGA 5401 AAA-ucgaag -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------a cuggggca-- ---------- ----cgcaaa cu-c-cca-- ac-agcUUGU 5581 A|CC--ga-A UCC(GCAGCA )GG|UCU-CC AAGGU(UUAG A)GUCUCU-| AGUCG-||A- 5641 UA-G--AUUA AU-GUAG-GU A-AGGGAAGU CGGCAA-AUU -AGAUCCGUA AC(UUCG)GG 5701 AUAAGGAUU| GGCUCUGAA- ---------- -(-----)---- -------UUC AGAACU|G(- --GCA)CGG- 6601 CUGAGGGAAU C|-CGACUGU CU(AAUUA)A AACAAAGCAU UGUG|A--UG G|CCU(---- 6661 caaa)AGG-- ---------- --U-GUUGAC ACAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---cgugaa- ----(gaaa) -----uucaa ----GCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC UCUGU-CCCU AUCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGAA -A-CAC-UAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCC G---GCA-UU |GUAAGGCGA UAUAAGAGGU 7021 GCAGAAUAGG UGGGAGCc-- ---------- --<------- ---------- ---gggguaa 7081 (--aaca--- )uuaccucc- ---------- ---------- ------->(- -----)---- 7141 ------ccgG C-ACCAAUGA GA-UACCACC |ACUCUUAC- -UGUUG-CCU UACUUAc--- 7201 ------(--- --)------| -- gGACAGUGCC AGGUGCGGAG UUUGACUG(G 7561 GG)CGGUAC| AUCUCC(AAA ACAAUAAC)G GAGGU|G|U| CCAAAGGUCA GC|UCAGUGU 7621 GG(ACA---- GAAA)CCACA CGCUGA|GC( A|U--AAGG) ACAAAAG-CU G-GCUUGAUC 7681 -UCGAUGU(u c--aguac-- )AUAUUGAGA CAGC(-GAAA )GCUAGG|CC --UCA|CGA- 7741 UCCUUUUG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -GUU-UAA(- -AGAG-U--U U---)----- ---------- 7861 -----UUA|G CAAGAG-GUG UC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCCGCCAAGC G(UUCAU)AG CGACGUGGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -AA-)AUUCA CAAA-GCGU| AGGAU(UGUU C)ACCCUUU- 8041 CAAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GGUGU-G<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- --cgaacgaa cacg>aacGC UA-UC-UU-A ACGGAAAUGC UGUG(CAGUA 8281 C(GAGA)GGA AC-)CACAGC U|UCGAACCA AUGGCUCA-A UAC|CUAGUU C(GACC)GGA 8341 CUUUGGUAUA A-CGCUAC-- GU-UCGU--U GGAUUAUGCC U(GAACGCCU C-U-A)AGGU 8401 CGUAACCA-A ACCG-----a gcuG--AUAG U --|------( ---)------ 8701 -----agacc |cccua(-ca aacga)ua-g guuu-----a cag|gcuggg aguugcgagu 8761 ug-cagagag gu----(gua c--------- ---------- ---------- ---------- 8821 ----)----a uuucgauc-c uc-|agucgu u|u----cug u--ugu-c-g ac--ggg-uc 8881 ua---|---- ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Aedes.sp. 9262 bp RNA RNA 11-JAN-191 DEFINITION Aedes sp.. ACCESSION No information KEYWORDS No information. SOURCE Aedes sp. ORGANISM Aedes sp. REFERENCE 1 (bases 1 to 8312) AUTHORS Pawlowski,J., Szadziewski,R., Kmieciak,D., Fahrni,J. and Bittar,G. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X89641 LOCUS AS28SRRNA 1062 bp DNA INV 20-JUL-1995 DEFINITION Aedes sp. DNA for 28S ribosomal RNA gene. ACCESSION X89641 NID g908814 KEYWORDS 28S ribosomal RNA; 28S rRNA gene. SOURCE Aedes sp.. ORGANISM Aedes sp. Eukaryotae; mitochondrial eukaryotes; Metazoa; Arthropoda; Tracheata; Insecta; Pterygota; Diptera; Nematocera; Culicidae; Aedes. REFERENCE 1 (bases 1 to 1062) AUTHORS Pawlowski,J., Szadziewski,R., Kmieciak,D., Fahrni,J. and Bittar,G. TITLE Phylogeny of Mosquitoes and related families (Diptera: Culicomorpha) based on the 28S rDNA sequence data JOURNAL Unpublished REFERENCE 2 (bases 1 to 1062) AUTHORS Pawlowski,J. TITLE Direct Submission JOURNAL Submitted (13-JUL-1995) to the EMBL/GenBank/DDBJ databases. J. Pawlowski, University of Geneva, Dept of Zoology & Animal Biology, 154 route de Malagnou, CH-1224 Chene-Bougeries, SWITZERLAND COMMENT NCBI gi: 908814 FEATURES Location/Qualifiers source 1..1062 /organism="Aedes sp." /dev_stage="adult" /sex="male" /clone="CUL4.37" rRNA <1..>1062 /gene="28S rRNA" /note="fragment including divergent domains D4-D7" /product="28S ribosomal RNA" BASE COUNT 289 a 220 c 274 g 278 t 1 others ORIGIN BASE COUNT 289 a 220 c 274 g 278 t 8201 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~--~~|~~( ~~~~)~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 901 ~~~~~~~~~~ ~~~-~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 --|~(~~~)~ |~~~~-(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~----~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~-~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~-~(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~-------- --------~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~------ ---------- ---------- --------~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~]~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~----- ----~)~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~-- 3361 --~)~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGA -GCAc--|-- -|-gcaacgu uucgaa---- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------cu 3661 cuauuCUUAU -C|UGG--UA AA-GCGAAUG AUUAGAGGC- -----cUUAG GUUC--(gaa 3721 a-u)--GAUC U-UAA-|CCU AUUC-UCAAA CUAUA-AAUG |GGUACGuac -cauaacau( 3781 ucuugcaug) auguuauugc aacguugacg ccgggccgcc cccuguuagg g--------c 3841 gcugccaccc aaguggcgua gaagauaucu g|ug-ugcuu -agu-GGGCC AAGU-UUUG( 3901 G-UAAG)CAG AAC-UGGU-G CUGU-G(GA- UGAA)CCA-- AACGUAA--- UGUUACG--G 3961 C|GCCU-aaa u-AA-AC-GA CGCAUcau-- ------a-ga uaccau---- -GAAAGGUGU 4021 U--GAUUGCU ACAGACA-GC AGGACGGUGG AC(AUGG-AA GUC)GUCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUACC -GAAGCAAUU AGC|CC-UUA AAA--UGGAU 4141 G--GCG-CU- UAAGUCGUU| U|-------- --GCCUAU-- --ACAUUAC| (- -----)-acg ccagc-gAGU AGGA------ 4441 --GGG|-UC- UG-GU-GG-- --------U- -GUG-CGU-- U------GAA GUGC-----C 4501 U-GGC(GUAA -)-CGA-CA- UGG|A-GCC| G--CCACUA- GCAC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCgaa- u(gagau--- ---------- ---------- ---------- 4621 --)cuugGAU |GACUGAAGU G-GAG|GAGG GUU|UCGUGU CA-ACA(-GC AGU)UG|AAC 4681 ACGAGUUAGC |-CAA-UCCU AAGC------ -(----)--- 4921 ----GC-GAA AGGGA-AU-C CGG(UUACAA UU-)CCGGA| -GC----cug u-uggguaua 4981 cg[uuugcau uggcgu---- --------cu ca-------- ---uaccg(- -gaaa--)cg 5041 gua-gcgccu uuguaa---- -------uca ug(gcaa-)c augaauc-c] uuu-ucuucg 5101 agaa-----g cca--acaag ag-a-uauc- -GG-AAGA(G UUUUCUUU-) UCUGUU-|UU 5161 A-caguca-- --------ca cua|g---CC AUGG--AAGU ----CU(UUC AU-)AGAGA- 5221 GA-UA-UGG- uugga----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- --------c- ----aggc-u gGU-----AG 5341 AGCAUGGUA( -uuaaau-)U GCUGUGUC-g auau-u---c -ucuuc--uu ggaC-CUUGA 5401 AAA-ucgaag -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------a cuggggca-- ---------- ----cgcaaa cu~~~~~~-- ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~-~~~ ~|~~~(~--~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~-~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-->(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ -~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(- -~~~~~~~~~ ~~~-)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~-)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS C.pipiens 9262 bp RNA RNA 11-JAN-191 DEFINITION Culex pipiens. ACCESSION No information KEYWORDS No information. SOURCE Culex pipiens. ORGANISM Culex pipiens. REFERENCE 1 (bases 1 to 8312) AUTHORS Pawlowski,J., Szadziewski,R., Kmieciak,D., Fahrni,J. and Bittar,G. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X89642 LOCUS CP28SRRN1 1060 bp DNA INV 20-JUL-1995 DEFINITION C.pipiens DNA for 28S ribosomal RNA gene. ACCESSION X89642 NID g908843 KEYWORDS 28S ribosomal RNA; 28S rRNA gene. SOURCE house mosquito. ORGANISM Culex pipiens Eukaryotae; mitochondrial eukaryotes; Metazoa; Arthropoda; Tracheata; Insecta; Pterygota; Diptera; Nematocera; Culicidae; Culex. REFERENCE 1 (bases 1 to 1060) AUTHORS Pawlowski,J., Szadziewski,R., Kmieciak,D., Fahrni,J. and Bittar,G. TITLE Phylogeny of Mosquitoes and related families (Diptera: Culicomorpha) based on the 28S rDNA sequence data JOURNAL Unpublished REFERENCE 2 (bases 1 to 1060) AUTHORS Pawlowski,J. TITLE Direct Submission JOURNAL Submitted (13-JUL-1995) to the EMBL/GenBank/DDBJ databases. J. Pawlowski, University of Geneva, Dept of Zoology & Animal Biology, 154 route de Malagnou, CH-1224 Chene-Bougeries, SWITZERLAND COMMENT NCBI gi: 908843 FEATURES Location/Qualifiers source 1..1060 /organism="Culex pipiens" /dev_stage="adult" /sex="male" /clone="CUL2.16" rRNA <1..>1060 /gene="28S rRNA" /note="fragment including divergent domains D4-D7" /product="28S ribosomal RNA" BASE COUNT 280 a 223 c 275 g 280 t 2 others ORIGIN BASE COUNT 280 a 223 c 275 g 280 t 8204 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~--~~|~~( ~~~~)~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 901 ~~~~~~~~~~ ~~~-~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 --|~(~~~)~ |~~~~-(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~----~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~-~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~-~(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~-------- --------~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~------ ---------- ---------- --------~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~]~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~----- ----~)~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~-- 3361 --~)~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UG-a -ggac--|-- -|-gcaacau uucgga---- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------uu 3661 cuauuCUUAU -C|UGG--UA AA-GCGAAUG AUUAGAGGC- -----cUUAG GUUC--(gaa 3721 a-u)--GAUC U-UAA-|CCU AUUC-UCAAA CUAUA-AAUG |GGUACGuac -caugacau- 3781 ucuugcaug- augucauug- ----caaccg uucgaacguc gggccgccc- (cuugccu)- 3841 -gggcguncc ggucgacgua caagauaucu g|ug-uucuu -AGU-GGGCC AAGU-UUUG( 3901 G-UAAG)CAG AAC-UUGU-G CUGU-G(GA- UGAA)CCA-- AACGUGA--- UGUUACG--G 3961 C|GC-u-aaa u-aa-ac-g- cg-AUcau-- ------a-ga uaccau---- -GAAAGGUGU 4021 U--GAUUGCU ACAGACA-GC AGGACGGUGG AC(AUGG-AA GUU)GUCAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAGCAAUU AGC|CC-UUA AAA--UGGAU 4141 G--GCG-CU- UAAGUCGUU| U|-------- --GCCUAU-- --ACAUUAC| (- -----)-acg ccagc-gAGU AGGA------ 4441 --GGG|-UC- UG-GU-GG-- --------U- -GUG-CGU-- U------GAA GUGC-----C 4501 U-GGC(GUAA -)--CGACA- UGG|A-GCC| G--CCACUA- GCAC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCgaa- u(gagau--- ---------- ---------- ---------- 4621 --)cuugGAU |GACUGAAGU G-GAG|GAGG GUU|UCGUGU CA-ACA(-GC AGU)UG|AAC 4681 ACGAGUUAGC |-CAA-UCCU AAGC------ -(----)--- 4921 ----GC-GAA AGGGA-AU-C CGG(UUACAA UU-)CCGGA| -GC----cug u-uggguaua 4981 cg[uuugcau ugg------- -----cg-gu aa-------- ---uaccg(- -gcaa--)c- 5041 gua-gcgccu uuguaa---- -------uca ug(gcaa-)c augaauc-c] uuu-ccuucg 5101 agaa-----g cca--acaag ag-a-uauc- -GG-AAGA(G UUUUCUUU-) UCUGUU-|UU 5161 A-cagcca-- --------ca cug|g---CC AUGG--AAGU ----CU(UUC AU-)AGAGA- 5221 GA-UA-UGG- ucgga----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- --------c- ----aagc-u gGU-----AG 5341 AGCAUGGUA( -uuaaau-)U GCUGUGUC-g auau-u---c -ucuuc--uu ggaC-CUUGA 5401 AAA-ucgaag -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------a cuggggca-- ---------- ----cgcaaa cu~~~~~~-- ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~-~~~ ~|~~~(~--~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~-~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-->(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ -~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(- -~~~~~~~~~ ~~~-)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~-)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Paradix.sp 9262 bp RNA RNA 11-JAN-191 DEFINITION Paradixa sp.. ACCESSION No information KEYWORDS No information. SOURCE Paradixa sp. ORGANISM Paradixa sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X89648 LOCUS PS28SRRNA 1052 bp DNA INV 20-JUL-1995 DEFINITION Paradixa sp. DNA for 28S ribosomal RNA gene. ACCESSION X89648 NID g914865 KEYWORDS 28S ribosomal RNA; 28S rRNA gene. SOURCE Paradixa sp.. ORGANISM Paradixa sp. Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicomorpha; Culicoidea; Dixidae; Paradixa. REFERENCE 1 (bases 1 to 1052) AUTHORS Pawlowski,J., Szadziewski,R., Kmieciak,D., Fahrni,J. and Bittar,G. TITLE Phylogeny of Mosquitoes and related families (Diptera: Culicomorpha) based on the 28S rDNA sequence data JOURNAL Unpublished REFERENCE 2 (bases 1 to 1052) AUTHORS Pawlowski,J. TITLE Direct Submission JOURNAL Submitted (13-JUL-1995) to the EMBL/GenBank/DDBJ databases. J. Pawlowski, University of Geneva, Dept of Zoology & Animal Biology, 154 route de Malagnou, CH-1224 Chene-Bougeries, SWITZERLAND COMMENT NCBI gi: 914865 FEATURES Location/Qualifiers source 1..1052 /organism="Paradixa sp." /dev_stage="larva" /clone="CUL12.17" rRNA <1..>1052 /gene="28S rRNA" /note="fragment including divergent domains D4-D7" /product="28S ribosomal RNA" BASE COUNT 324 a 156 c 242 g 330 t ORIGIN BASE COUNT 324 a 156 c 242 g 330 t 8210 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~--~~|~~( ~~~~)~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 901 ~~~~~~~~~~ ~~~-~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 --|~(~~~)~ |~~~~-(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~----~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~-~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~-~(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~-------- --------~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~------ ---------- ---------- --------~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~]~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~----- ----~)~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~-- 3361 --~)~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGA -GCAc--|-- -|-uuaaaua uugaacaaua auu------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------aa 3661 caauuCUUAU -C|UGG--UA AA-GCGAAUG AUUAGAGGC- -----aUUAG GUUC--(gaa 3721 a-c)--GUUC U-UAA-|CCU AUAC-UCAAA CUAUA-AAUG |GGUACGaua -aauuacau( 3781 ucuugauug) auguaauua- --------uu uugcuggcac u-uua----- -(uuuuau)a 3841 auuggugcug augguau-ua ga--uuuu-u g|ug-ugccu -AGU-GGGCC AAGU-UUUG( 3901 G-UAAG)CAG AAC-UGGU-G CUGUGG(GA- UGAA)CCA-- AUCGCGA--- UGCUAAG--G 3961 C|GC-U-aaa u-AA-AC-GA CGUAUcau-- ------g-ga uaccau---- -GAAAGGUGU 4021 U--GAUUGCU GAAGACA-GC AGGACGGUGG AC(AUGG-AA GUU)GUGAUC CG|-(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAGCAAUU AGC|CC-UUA AAA--UGGAU 4141 G--GCG-CU- CAAGUCGUU| U|-------- --GCCGAU-- --GCAUUGC| (- -----)-aua auagu-gAGU GGGA------ 4441 --GGG|-UC- UA-AU-GG-- --------U- -GUG-CGC-- U------GAA GUAU-----C 4501 U-AGC(GUAA -)G-ugaua- ugg|A-GCC| A--CCAUUG- GCAC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCgaa- u(gagac--- ---------- ---------- ---------- 4621 --)cuugGAU |GACUGAAGU G-GAG|GAGG GUU|UCGUGU CA-ACA(-GU AGU)UG|AAC 4681 ACGAGUUAGU |-CAG-UCCU AAGC------ -(----)--- 4921 ----GC-GAA AGGGA-AU-C UGG(UUACAA UU-)CCAGA| -AC----cua u-ugaguaua 4981 cg[uuuguuc auguau---- ---------- ---------- -uuuuaau(- auuau--)au 5041 uaa-uauacu guucaa---- -------ucu cg(guaa-)c gagaa-a-u] uuu-u-auag 5101 agau-----g ccg--aggag au-g-uacc- -GG-GAGA(G UUUUCUUU-) UCUGUU-|UU 5161 A-caguug-- --------ua cau|a---CC AUGG--AAGU ----CU(UUC AU-)AGAGA- 5221 GA-UA-UGG- uauaa----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- --------u- ----agac-u gGU-----AG 5341 AGCAUGGCA( -uuaaau-)U GCUAUGUCgg guau-a---u -ucuuc--uc ggaC-CUUGA 5401 AAA-ucuaug -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------a aaguggua-- ---------- ----cgcaaa cu~~~~~~-- ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- ~~~~~~~~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~-~~~ ~|~~~(~--~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~-~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-->(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ -~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(- -~~~~~~~~~ ~~~-)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~-)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS A.ervi 9262 bp RNA RNA 11-JAN-191 DEFINITION Aphidius ervi. ACCESSION No information KEYWORDS No information. SOURCE Aphidius ervi. ORGANISM Aphidius ervi. REFERENCE 1 (bases 1 to 8312) AUTHORS Varricchio,P., Gargiulo,G., Graziani,F., Manzi,A., Pennacchio,M. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X83495 LOCUS AE28SRRNA 1637 bp DNA INV 21-DEC-1994 DEFINITION A.ervi 28S rRNA gene. ACCESSION X83495 KEYWORDS 28S rDNA; 28S ribosomal DNA. SOURCE Aphidius ervi. ORGANISM Aphidius ervi Eukaryota; Animalia; Metazoa; Arthropoda; Uniramia; Insecta; Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita; Parasitica; Ichneumonoidea; Braconidae. REFERENCE 1 (bases 1 to 1637) AUTHORS Varricchio,P., Gargiulo,G., Graziani,F., Manzi,A., Pennacchio,M., Digilio,E., Tremblay,E. and Malva,C. TITLE Characterization of A.ervi (Hymenooptera,Braconidae) ribosomal genes and identification of site-specific insertion elements beloning to the non-LTR retrotransposon family JOURNAL Insect Biochem. Mol. Biol. In press STANDARD full automatic REFERENCE 2 (bases 1 to 1637) AUTHORS Malva,C.P. TITLE Direct Submission JOURNAL Submitted (14-DEC-1994) to the EMBL/GenBank/DDBJ databases. C.P. Malva, Inst.Intern.di Genetica e Biofisica, Via Marconi 10, I- 80125 Napoli, ITALY STANDARD full automatic COMMENT NCBI gi: 603809 FEATURES Location/Qualifiers source 1..1637 /organism="Aphidius ervi" rRNA 1..492 /note="b1" /product="28S ribosomal RNA" rRNA 493..1437 /note="b2" /product="28S ribosomal RNA" BASE COUNT 424 a 335 c 416 g 462 t ORIGIN BASE COUNT 424 a 335 c 416 g 462 t 7625 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~--~~|~~( ~~~~)~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 901 ~~~~~~~~~~ ~~~-~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 --|~(~~~)~ |~~~~-(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~----~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~-~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~-~(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~-------- --------~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~------ ---------- ---------- --------~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~]~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~----- ----~)~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~-- 3361 --~)~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ --(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~-|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ -~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~-~~~~~ ~~~~~~~~~~ ~~~~-~~~~( 3901 ~~~~~~)~~~ ~~~-~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~-- ~~~~~~~--~ 3961 ~|~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---- ~~~~~~~~~~ 4021 ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~-~~~ ~~~--~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~-- -~~~~~~~~~ ~~~~~~~~~~ ~----~-~~~ ~~~~---~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~- ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~~~~~ ~~~~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-----~-- -~---~~~~~ ~~~~~~~~~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~(~~~~~)~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~----~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~-~~~~~ ---~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ----~~~~~~ ~~~----~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~GGAUCCGUA AC(UUCG)GA 5701 AUAAGGAUU| GGCUCUGAG- ---------- -(-----)---- -------CUC AGAACU|G(- --GCA)CGGA 6601 CUAGGGGAAU C|-CGACUGU CU(AAUUA)A AACAAAGCAU UGCA|G--UG G|CCC(---- 6661 ucac)GG--- ---------- --U-GUUGAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---cgugaa- ----(gaaa) -----uucaa ----GCAAGC G|CGG-UAAA 6781 C|GGC|GGGA GU(AAC-UAU G)UCUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC UCUGU-CCCU AUcuacucuc 6901 ua|gcgaaac c|acu-gCCA AG(GGAA-CG GG)CUUGGAA -A-AAU-UAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCU G---GCA-CU |GUAAGGAGA CAUGAGA-GU 7021 GUAGCAUAAG UGGGAGAUA- ---------- --<------- ---------- ---------- 7081 (--guaa--- )--------- ---------- ---------- ------->(- -----)---- 7141 -------UAU C-GUCGGUGA AA-UACCACU |ACUUUCAU- -CGUUU-CUU UACUUAc--- 7201 ------(--- --)------| --g GACAC-UGCC A-GGCG-GGG AG-UUUGACU G(GGG)CGGU 7561 A-C|AUCUGU (CAAAGAAUA AC-)GCAG-G U|G|U|CCU- AAGGC-CAGC |UCAGC-GAG 7621 -G(ACA---- GAAA)CCUCG CGUAGA|GC( A|A--AAGG) GCAAAAG-CU G-GCUUGAUC 7681 -UCGAUGU(u c--aguau-- )GCAUAGAGA CUGC(-GAAA )GCACGG|cc --uau|cga- 7741 uccuuuug-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -GCU-UAA(- -AGAG-U--U U---)----- ---------- 7861 -----UUA|G CAAGAG-GUG UC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCGGCCAAGC G(UUCAU)AG CGACGUCGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-CGAAG(CA -AA-)AUUCG CCAA-GCGU| CGGAU(UGUU C)ACCCGCCA 8041 ACAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-C<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->-ucgu cg-uu-gc-g auaguaAUCC UGCU(CAGUA 8281 C(GAGA)GGA AC-)CGCAGG U|UCGGACAU UUGGUUCAUG CAC|-UCGGU C(GAGC)GGC 8341 CGAUGGUGCG A-AGCUACC- AU-CCGU--G GGAUUAUGCC U(GAACGCCU C-U-A)AGGC 8401 CGUAUCCU-- uucu-----a guca--aagg u --|------( ---)------ 8701 -----gaauc |gucug(-ua gacga)cu-u aggua----c gug|gcgggg uguuguacuc 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (7)-Pseudo 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS (8)-Nemato 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS A.lumbri.1 9262 bp RNA RNA 18-JUN-1992 DEFINITION Ascaris lumbricoides.; 18S ribosomal RNA; 26S ribosomal RNA. ACCESSION M74584 KEYWORDS 18S ribosomal RNA; 26S ribosomal RNA. SOURCE Ascaris lumbricoides. ORGANISM Ascaris lumbricoides. REFERENCE 1 (bases 1 to 3479) AUTHORS Mueller,E., Neuhaus,H., Tobler,H. and Mueller,F. TITLE organization The two main rDNA size classes of Ascaris lumbricoides: Comparison of transcription termination and spacer JOURNAL Nucleic Acids Res. 20, 2977-2990 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: M74584 NCBI gi: 159682 BASE COUNT 120 a 112 c 129 g 134 t 8767 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~--~~|~~( ~~~~)~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~(~~~ ~~-)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 901 ~~~~~~~~~~ --~-~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 --|~(~~~)~ |~~~~-(~~~ ~~~~)~~~~~ ~~|-~~~~~~ ~~~~~~~~~~ ~----~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~-~~~ 1141 ~~~~)~~~~~ ~~~~~~---~ ~~~~~~-~(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ~~~~~~~~-- ---------- ---------- ---------- )~~~~~~~~~ ~~~----~~~ 1381 ~~-------- --------~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~- 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------~ 2881 ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~--------- ---------- ---------- ---------- ---------- ---------~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~(~~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~]~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~----- ----~)~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~-- 3361 --~)~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ --(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~(~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~(~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~GA-)AUUCG CCAA-GC-U| UGGAU(UGUU C)ACCCACCA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA -AGGUUAGUU 8101 UUACCCUACU GU-GA-C<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->-ucgu ug-uU-GC-G AUAGUAAUCC UGCU(UAGUA 8281 C(GAGA)GGA AC-)CGCAGG U|UCAGACAU UUGGUUCAUG UGC|UUGGCC G(AUCU)CGG 8341 CCAUGGUGCG A-AGCUACC- AU-CUGA--G GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCC-g ccua--ugaa ggc---aacg a<--ugaaau uugcucgc-c ggugucggga 8461 ggcacuucua -uguaacu(u uuaa)aguua cagcuaaugc cccauuauau ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- -------ggu cuuuccgaac gauugaaaag ucgugcgguu 8641 gccaaagccg ga-cua-cac g-guac-aac gucggggcg> --|------( ---)------ 8701 ---caaaauc |acuug(-ca gacga)cu-u gauua----c ugg|ucaagg uguuguaucc 8761 ag-uagagca gc----(cuc -cau------ ---------- ---------- ---------- 8821 ----)----a cugcgauc-u gu-|ugagac u|cau--ccu u--uga-uug ga--cga-uu 8881 ug---|---- ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS A.lumbri.2 9262 bp RNA RNA 18-JUN-1992 DEFINITION Ascaris lumbricoides.; 18S ribosomal RNA; 26S ribosomal RNA. ACCESSION M74585 KEYWORDS 18S ribosomal RNA; 26S ribosomal RNA. SOURCE Ascaris lumbricoides. ORGANISM Ascaris lumbricoides. REFERENCE 1 (bases 1 to 3007) AUTHORS Mueller,E., Neuhaus,H., Tobler,H. and Mueller,F. TITLE organization The two main rDNA size classes of Ascaris lumbricoides: Comparison of transcription termination and spacer JOURNAL Nucleic Acids Res. 20, 2977-2990 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: M74585 NCBI gi: 159684 BASE COUNT 121 a 110 c 130 g 133 t 8768 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~--~~|~~( ~~~~)~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~(~~~ ~~-)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ 901 ~~~~~~~~~~ --~-~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 --|~(~~~)~ |~~~~-(~~~ ~~~~)~~~~~ ~~|-~~~~~~ ~~~~~~~~~~ ~----~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~-~~~ 1141 ~~~~)~~~~~ ~~~~~~---~ ~~~~~~-~(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ~~~~~~~~-- ---------- ---------- ---------- )~~~~~~~~~ ~~~----~~~ 1381 ~~-------- --------~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~- 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------~ 2881 ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~--------- ---------- ---------- ---------- ---------- ---------~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~(~~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~]~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~----- ----~)~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~-- 3361 --~)~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ --(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~(~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~(~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~GA-)AUUCG --AA-GCGU| UGGAU(UGUU C)ACCCACCA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GU-GA-C<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->-ucgu ug-uU-GC-G AUAGUAAUCC UGCU(UAGUA 8281 C(GAGA)GGA AC-)CGCAGG U|UCAGACAU UUGGUUCAUG UGC|-UUGGC C(GAUC)GGC 8341 CAAUGGUGCG A-AGCUACC- AU-CUGA--G GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCC-g ccua-gugaa ggc---aacg a<---uaaau uugcucgc-c ggugucggga 8461 ggcacuucua -uguaacu(u uuaa)aguua cagcuaaugc cccauuauau ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- -------ggu cuuuccgaac gauugaaaag ucgugcgguu 8641 gccaaagccg ga-cua-cac g-guac-aac gucggggcg> --|------( ---)------ 8701 ---caaaauc |acuug(-ca gacga)cu-u gauua----c ugg|ucaagg uguuguaucc 8761 ag-uagagca gc----(cuc -cau------ ---------- ---------- ---------- 8821 ----)----a cugcgauc-u gu-|ugagac u|cau--ccu u--uga-uug ga--cga-uu 8881 ug---|---- ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS C.elegans 9262 bp RNA RNA ~?~???? DEFINITION Caenorhabditis elegans 5.8S and 28S. ACCESSION No information KEYWORDS No information. SOURCE Caenorhabditis elegans 5.8S and 28S. ORGANISM Caenorhabditis elegans 5.8S and 28S. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 9262) Corresponding GenBank entry: UNPUBLISHED Phylo:Eukaryotes,Animal,? BASE COUNT 893 a 769 c 1027 g 973 t 5600 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~CUAGCU UCAGCGAUGG AUC|GGUUGC 61 |AUCGAGU|A U|-CGAUGAA GAA|CGCA(- -GCUU-GC)U |GC-GUUACU UA-ccac|[- 121 gaauugca-g acgcuuagag ---------- ---------- ---------- -------]-- 181 ---------- ---------- ---uggug|A AAUUUC-GAA Cgc-(-aua- )-g-c|acca 241 acu------g g(-------- ---------- ---------- ------gcc- u--)cc---- 301 --ag-uuggu ---acgucug -g-uu-cagg guug--(--- ---uu----/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --------cu )--caaccug aacucagu-c gUG----AUU 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UC AUUUAG-C-G G-AGGAAA-- --AGAAACU( 541 AAA-A)AG-G AU|UCCCUUA GU---AAC(G GCGA)GUG-A A-----ACGG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -----gcgcc g--aaucgau 781 caguc-(uuu ---)gg-cug cu-ucgaaau guggcguau- aggugu-aag u--------u 841 uccagcag-- ---------- ---------- ---------- ---------- -uguc-guau 901 gucc-gaa-- --g-ucc-u( u-(acgauu- )g)agg-c-- ---------- -c-a-uaaaC 961 --|C(AGA)G |AGGG-(UGC GAGC)-CCCG UU|--cugga uagcggcacu g-----uugg 1021 ---------- uucgcuug-c uccuug---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GCU(----UG 1141 AAAG)UGCAG CCUAAA---- guGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 AUAAACUU-- ---------- ---------- ---------- )CAU-CUAAG GCU----AAA 1381 UA-------- ---------- UCGAC-UCGA UUGCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGUUG -CAA-AGGAC UUU(ga-ag- )AGAG-AGUU C-AAGAGAAC G-UGAAAU-C 1501 GCUGG-AGU< gg---aaccg gagaca--gu u-gauguu-g cuu-ggagac aa---gcuug 1561 gugacu-ggu cgcuuaguug ugauc----- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---guugccg ggu---gucg uuucc-u--- augc----ua cgccgac--g gcguuggcug 1861 cucguucuag cccgacagug uugcccaucu cgcaagagaa ggugucuugc uggcgguagu 1921 ggguucgugg cggcuagcgu uuaguuacgc uagugu---- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ----guguga c-guc-ggug 2521 ug-------- --------aa agu-cgacg- a-cguuuccg >------ACC CGU(CUUGAA 2581 AC)ACGG|AU UGCGG-AGUG CUUGUCUACU GCGAGUCa-a agggu----( ----g-u-ua 2641 aa)------- ---------- ---a-ccuu- ---------- g--cGGCGAA AU(GAAA)GU 2701 AA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 -aggucagu- -(cucga--- --)--auugg cc-----gac gugggau-cu guguuc---- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( -------uuc g---)----- ---------- --gagugcag cgcaccacgg 3061 cccugugcgu ------guca -------(-c uug---)--- ---------- ---------- 3121 -ugac--ugu gcag------ --------ag g]-------- ---------U UGAGCAGUU- 3181 -GGC-AAACG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AG|C-AGGAU GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAAGU CCG-UA---U CG-GUUCUGA (CGUGCAAA) 3301 UCG-A-UCGA UAGACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCUUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGA -UCUc--|-- -|-------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------ag 3661 gcaguUAUAU -U|CGG--UA AA-GCUAAUG AUUAGAGGC- -----cUUGG GGAC--(gua 3721 a-u)--GUCC U-CAA-|CCU AUUC-UCAAA CUUUC-AAUG |GAUAUGaa- guugcaguu( 3781 ucuuuagug) aacugucaac gug------- ---------- ---------- ---------- 3841 ---------- ---------- ----AAUgc- g|AG-GUCCA -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G CUGUGG(GA- UGAA)CCA-- AACGUGG--- AGUUAAG--G 3961 U|GCCU-aac --UU-CU-CG CUCAU-ga-- --------ga ccccau---- -AAAAGGUGU 4021 U--GGUUGAU AUUGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGUAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- UAAGCGAGA| G|-------- --ACCUAU-- --ACUCCGC| (- -----)-guc guaac-gAGU AGGA------ 4441 --AGG|-UCg UG-GC-Gg-- --------u- -u-g--cgu- u------GAA GGCU----au 4501 G-AGC(GUAG -)GCUCGGC- UGG|A-GCU| U--CCGUCA- GUGC-AGA-U CGUAAU|GG- 4561 UAGUAGCAAA -UAUUCAAG- U(Ucgau--- ---------- ---------- ---------- 4621 --)CCUUGAA |GACUGAAGU G-GAG|AAGG GUU|CCACGU GA-ACA(-GU AGU)UG|GAU 4681 GUGGGUCAGU |-CGA-UCCU AAGG------ -(----)--- 4921 ----UC-GAA AGGGA-AU-A GGG(UUAAUA UU-)CCCUA| -AC----uga gaugcaa-ag 4981 au[------- ---------- ---------- ug-----u-- -g---uuc(- -uucg--)ga 5041 gcaca----- ---------- --------ag cgc-g(guaa -)cgcau-u] cga-acuugg 5101 uua------g ucg--cucaa ag-a-ccga- -GC-UAGA(G UUUUCUUC-) UCUAGU-|UA 5161 A-ggaacg-- ---------- gac|u---cC CUGG--AAUU ----GG(UUC AG-)CCAGA- 5221 GA-UG-GGG- acguu----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- -----guuuc cGA-----AA 5341 AGCACCGCG( -guuuc--)U GUGGUGUC-u cgugcu---c -uuuga--ac ggcC-CUUaA 5401 AAC-accaag -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaggcua-- ---------- ----uuaa-u --uu-gca-- cu-caaUCGU 5581 A|CC--GAUA UCC(GCAUUA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| AGUCG-||A- 5641 UA-G--AAUA AU-GUAG-GU A-AGGGAAGU CGGCAA-ACU -AGAUCCGUA AC(UUCG)GG 5701 AAAAGGAUU| GGCUCCAGU- ---------- -(-----)---- -------ACU GGAACC|G(- --GUA)CGGA 6601 CUCAGGGAAU C|-CGACUGU CU(AAUUA)A AACAGAGGUG ACAG|A--UG G|UCC(---- 6661 uugc)GGA-- ---------- --C-GUUGAC UGUCACUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUUAA- ---aucgua- ----(guaa) -----uucga ----GUAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-U( 6841 UAAUU)GUUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCU ACUGU-CCCU AACUACUUUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -A-AAA-UAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUUU G---ACA-UU |GUGAAGAGU CAUGAGAGGU 7021 GUAGCAUAGG UGGGAGUC-- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -UUCG)---- 7141 --------GA C-GACAGUGA AA-UACCACC |ACUUUCAU- -CGACU-CUU UACUUAu--- 7201 ------(--- --)------| --a GACAG-UGUC A-AGCG-GGG AG-UUUGACU G(GGG)CGGU 7561 A-C|AUCUAU (CAAAUCGUA AC-)GUAG-G U|G|U|CCU- AAGGC-GAGC |UCAGA-GAG 7621 -G(ACG---- GAAA)CCUCU CGUAGA|GC( A|A--AAGG) GCAAAAG-CU U-GCUUGAUC 7681 -UUGACUU(u c--aguac-- )GAGUACAGA CCGC(-GAAA )GCGUGG|CC --UAU|CGA- 7741 UCCUUUUA-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -auC-CUG(- -AUUG-U--U U---)----- ---------- 7861 -----CAG|G UAAGAG-gug uC|aGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UCCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-CGAAG(CA -GA-)AUUCG CCAA-GCGU| UGGAU(UGUU C)ACCCACUA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GUUGA-c<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->-uugu ua-uU-GC-G AAAGUAAUCC UGCU(UAGUA 8281 C(GAGA)GGA AC-)AGCGGG U|UCAAACAU UUGGUUCAUA GAC|-UUGAU C(GACA)GAU 8341 CAAUGGUCUG A-AGCUACC- AU-UUGA--G AGAUUAUAAC U(GAACGCCU C-U-A)AGUU 8401 AGAAUCUC-G CCUU-gucaa gGCG--aaaa u<-----uuc uugcuucc-c ggugucggga 8461 ggcaucucua -ucucgug(g caa-)cacga gagcuuaugc ccuau-guau ---------- 8521 ---------- ---------- ---------- ---------- ---------- ---------- 8581 ---------- ---------- -------ggc cuuggcgucg uagugaauuc ugcgacgcuu 8641 gccaacgcca gaucac-ucu g-guuc-aau gucggggcg> --|------( ---)------ 8701 ---cuaaauc |acuug(-ca uacga)cu-u ggucu---cu ugg|ucaagg uguuguauuc 8761 ag-uagagca gu----(ccu uuuau----- ---------- ---------- ---------- 8821 ----)----a cugcgauc-u gu-|ugagac u|-au--ccu u--uga-uug ag--uuu-uu 8881 ug---|---- ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS N.dubius 9262 bp RNA RNA 15-MAR-1988 DEFINITION Nematospiroides dubius.; 28S ribosomal RNA; ribosomal RNA. ACCESSION M15310 KEYWORDS 28S ribosomal RNA; ribosomal RNA. SOURCE Nematospiroides dubius. ORGANISM Nematospiroides dubius. REFERENCE 1 (bases 1 to 360) AUTHORS Qu,L.H., Hardman,N., Gill,L., Chappell,L., Nicoloso,M. and Bachellerie,J.-P.P. TITLE Phylogeny of helminths determined by rRNA sequence comparison JOURNAL Mol. Biochem. Parasitol. 20, 93-99 (1986) STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: M15310 Printed copy of sequence kindly provided by J.-P.Bachellerie, 27-APR-1987. NCBI gi: 175503 BASE COUNT 102 a 74 c 99 g 84 t 8903 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~ng )--caaccug agcucagg-c gUG----ACU 481 AC|CCGCCGA -A--CU|UA( AGCA)UA-UC AUUUAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-A)AG-G AU|UCCCUUA GU---AAC(G GCGA)GUG-A A-----CGGG GAGA------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -----gcgcu g--aaucuuu 781 cggug-(-uu a--)ca-ccg uu-aagaaau guagcguau- aggugucgau u--------u 841 ucaguuug-- ---------- ---------- ---------- ---------- -ugcu-gcau 901 gucc-aaa-- --g-ucc-c( u-(uugaua- )g)ggg-c-- ---------- -c-a-cauUC 961 --|C(UGA)G |AGGG-(UGC GAGA)-CCUG UG|---cgga caguggagca a-----gcug 1021 ---------- uacgauca-u accuug---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GCU(----UG 1141 AAAG)UGCAG CCUAAA---- guGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 AUAAACUU-- ---------- ---------- ---------- )CAU-CUAAG GCU----AAA 1381 UA-------- ---------- UAGAC-GCGA AUUCGAUAGC AAAC-AAGU~ ~~~~~~~~~- 1441 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------~ 2881 ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~--------- ---------- ---------- ---------- ---------- ---------~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~(~~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~]~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~----- ----~)~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~-- 3361 --~)~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ --(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~(~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~(~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS B.pahangi 9262 bp RNA RNA 15-MAR-1988 DEFINITION Brugia pahangi.; 28S ribosomal RNA; ribosomal RNA. ACCESSION M15309 KEYWORDS 28S ribosomal RNA; ribosomal RNA. SOURCE Brugia pahangi. ORGANISM Brugia pahangi. REFERENCE 1 (bases 1 to 363) AUTHORS Qu,L.H., Hardman,N., Gill,L., Chappell,L., Nicoloso,M. and Bachellerie,J.-P.P. TITLE Phylogeny of helminths determined by rRNA sequence comparison JOURNAL Mol. Biochem. Parasitol. 20, 93-99 (1986) STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: M15309 Printed copy of sequence kindly provided by J.-P.Bachellerie, 27-APR-1987. NCBI gi: 173984 BASE COUNT 118 a 69 c 87 g 88 t 8900 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~nu )--ugaccuc aacucagu-c gUG----AUU 481 AC|CCGCUGA -A--UU|UA( AGCA)UA-UA ACUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-G)AG-G AU|UUCCCUA GU---AAC(G GCGA)GUG-A A-----AAGG AAAA------ 601 ---------- ---------- ---------- ---------- -AGCCCG|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -----acgcu g--aauccaa 781 uagaua(-uu ua-)uggcua ua-uggaaau guagcguau- agguau-aac u--------a 841 uccguaac-- ---------- ---------- ---------- ---------a uauuu-uuac 901 accc-aaa-- --g-ucc-c( c-(uugagc- )g)ggg-c-- ---------- -u-u-cagUC 961 --|C(AUA)G |AAGG-(UGC UAGA)-CCUG UA|---cggg ugaaaaaagu u-----acgg 1021 ---------- ua-gguua-u uccuug---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GUU(----UG 1141 AGAU)UGCAG CCUAAA---- gaGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAACCU-- ---------- ---------- ---------- )CAU-CUAAG GCU----AAA 1381 UA-------- ---------- CGACC-AUGA GACCGAUAGC AAAC-AAGU~ ~~~~~~~~~- 1441 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------~ 2881 ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~--------- ---------- ---------- ---------- ---------- ---------~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~(~~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~]~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~----- ----~)~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~-- 3361 --~)~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ --(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~(~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~(~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS O.gibsoni 9262 bp RNA RNA 15-MAR-1988 DEFINITION Onchocerca gibsoni.; 28S ribosomal RNA; ribosomal RNA. ACCESSION M15308 KEYWORDS 28S ribosomal RNA; ribosomal RNA. SOURCE Onchocerca gibsoni. ORGANISM Onchocerca gibsoni. REFERENCE 1 (bases 1 to 363) AUTHORS Bachellerie,J.-P.P. Qu,L.H., Hardman,N., Gill,L., Chappell,L., Nicoloso,M. and TITLE Phylogeny of helminths determined by rRNA sequence comparison JOURNAL Mol. Biochem. Parasitol. 20, 93-99 (1986) STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: M15308 Printed copy of sequence kindly provided by J.-P.Bachellerie, 27-APR-1987. NCBI gi: 175568 BASE COUNT 122 a 68 c 85 g 87 t 8900 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~nu )--ugaccuc aacucagu-c gUG----AUU 481 AC|CCGCUGA -A--UU|UA( AGCA)UA-UA ACUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-G)AG-G AU|UUCCUUA GU---AAC(G GCGA)GUG-A A-----AAGG AAAA------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -----acgcu g--aauccaa 781 uagac-(auu ug-)gugcua ua-uggaaau guagcguau- agguau-aac u--------a 841 ucuauaac-- ---------- ---------- ---------- ---------a uauuu-uuac 901 accc-aaa-- --g-ucc-c( c-(uugagc- )g)ggg-c-- ---------- -u-a-caaUC 961 --|C(AUA)G |AAGG-(UGC UAGA)-CCUG UA|---cggg ugaaaaaagu u-----augg 1021 ---------- ua-gguua-u accuug---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GUU(----UG 1141 AGAU)UGCAG CCUAAA---- gaGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAACCU-- ---------- ---------- ---------- )CAU-CUAAG GCU----AAA 1381 UA-------- ---------- CGACC-ACGA GACCGAUAGC AAAC-AAGU~ ~~~~~~~~~- 1441 ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------~ 2881 ~~~~~~~~~~ ~(~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~--------- ---------- ---------- ---------- ---------- ---------~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~(~~ ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~]~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~----- ----~)~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~-- 3361 --~)~--~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ --(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~~~~~~~ ~(~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)<~~ ~~~~~~(~~~ ~~~~)~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~- -------)~~ ~~~~~~~~~~ ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~(~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~>~~~~ ~~~~~~~~~~ ~~~~~~|~(~ ~~~~~)~~~~ 6601 ~~~~~~~~~~ ~|~~~~~~~~ ~~(~~~~~)~ ~~~~~~~~~~ ~~~~|~~~~~ ~|~~~(~~~~ 6661 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 6721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~) ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ 6781 ~|~~~|~~~~ ~~(~~~~~~~ ~)~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~|~~~~~~~( 6841 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~|~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7201 ~~~~~~(~~~ ~~)~~~~~~| ~~<~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 7261 ~~~~)~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~>~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~)~~~~ 7561 ~~~|~~~~~~ (~~~~~~~~~ ~~~)~~~~~~ ~|~|~|~~~~ ~~~~~~~~~~ |~~~~~~~~~ 7621 ~~(~~~~~~~ ~~~~)~~~~~ ~~~~~~|~~( ~|~~~~~~~) ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~(~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~(~~~~~ )~~~~~~|~~ ~~~~~|~~~~ 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ 7861 ~~~~~~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~<~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (3)-Rhodop 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS (4)-Bangia 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS (4)-Florid 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS C.implexa 9262 bp RNA RNA 02-SEP-1998 DEFINITION Capreolia implexa.. ACCESSION No information KEYWORDS No information. SOURCE Capreolia implexa. ORGANISM Capreolia implexa. REFERENCE 1 (bases 1 to 363) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE A multigene phylogeny of the Gelidiales including nuclear large-subunit rRNA sequence data JOURNAL J. Appl. Phycol. (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF039545 LOCUS AF039545 2508 bp DNA PLN 02-SEP-1998 DEFINITION Capreolia implexa large subunit ribosomal RNA gene, partial sequence. ACCESSION AF039545 NID g3510592 KEYWORDS . SOURCE Capreolia implexa. ORGANISM Capreolia implexa Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Capreolia. REFERENCE 1 (bases 1 to 2508) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE A multigene phylogeny of the Gelidiales including nuclear large-subunit rRNA sequence data JOURNAL J. Appl. Phycol. (1998) In press REFERENCE 2 (bases 1 to 2508) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE Direct Submission JOURNAL Submitted (22-DEC-1997) CMSR, UNCW, 7205 Wrightsville Avenue, Wilmington, NC 28403, USA REFERENCE 3 (bases 1 to 2508) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE Direct Submission JOURNAL Submitted (01-SEP-1998) CMSR, UNCW, 7205 Wrightsville Avenue, Wilmington, NC 28403, USA REMARK Sequence update by submitter COMMENT On Sep 2, 1998 this sequence version replaced gi:2865447. FEATURES Location/Qualifiers source 1..2508 /organism="Capreolia implexa" /db_xref="taxon:28865" /note="Port Philip Bay, Victoria, Australia" rRNA <1..>2508 /product="large subunit ribosomal RNA" BASE COUNT 657 a 512 c 735 g 602 t 2 others BASE COUNT 657 a 512 c 735 g 602 t 6756 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~(~~~~~~ ~)~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~cagu 901 uugggaaa-- --g-uga-c( a--uggaaa- -u)guc-c-- ---------- --------GC 961 --|C(GUG)G |AGGG-(UGA UAGC)-CCCG UC|-cauccc gaucaggacg cuc---c--- 1021 ---guaaaca gaauauuu-c agau------ ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUA GUU(----UG 1141 GGAA)UGCUG CUCUAA---- -UUGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUCU-- ---------- ---------- ---------- )CAU-CAAAG GCU----AAA 1381 UA-------- ---------- auggU-AGGA GACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAU- GAAA-AGCAC UUU(ga-aa- )AGAG-GGUG --AAAAGAAC C-UGAAAC-C 1501 GUUAC-ggg< gg---aagcg gauugcau-u auucuaauuu uaacguguuc aaccuuuuag 1561 gugcauugac guua-aaauu uaucuguugu ggauuuuuaa uaaucgauau uggauuauug 1621 aagauugagg gcuccacuuu gugugaggac ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- -------aac ggau-ugacg augcgauacg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAGCGCGGGU GCGAGUCa-g aag-gu---( ----g-ucaa 2641 a-)------- ---------- ---a-ccug- ---------- --ugggcGAA GU(GAAA)GC 2701 GA[gauaaaa cucucaguuu gaggcggcau auuuucguug aaaauagguc cgacc----- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- -]-------- ---------U UGAGCAGUU- 3181 -GCG-CUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCGG- AG|U-AGGGC AAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-GUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU CGAACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUUCCUC CGAAGUUUCU --(CUCA)GG 3421 AUAGC--GGG -CCGaca|-- -|-uagug-- ---u------ ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 --uguUUUGU -G|CGG--UA AA-GCGAAUG AUUAGCGUA- -----UUUGG GGGC--(guu 3721 u-a)--GCCU U-CAG-|ACG AUUC-UCAAA CUUUC-AAUG |CGCAAG-gg -uguugcug- 3781 --cuuaauug agcuu-ca-c cggua----- ---------- ---------- ---------- 3841 ---------- ---------- ----aaaacg u|CG-GCCCU --GU-GGGCC -ACU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUACGG(GA- UGAA)CCG-- UAAGCAC--- GGUUAAG--G 3961 C|GCCA-AAC U-A--CU-CG CU-ua--u-- --------ag auccca---- cAAAAGGUGU 4021 U--GAUUCAU CGAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(CAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAAUU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- UAAGCGGGU| G|-------- --GCCGAC-- --ACCGUGC| (- -----)--uu cagau-gAGU AGGA------ 4441 --GGA|-CG- UG-GU-GA-- --------U- -C-G-UAA-- c------GAA Guau------ 4501 g-cgu(gcga -)acgugua- UCG|A-ACG| A--UCACUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAG- C(gagau--- ---------- ---------- ---------- 4621 --)CCUUGAA |GGGCGAACG G-GGG|AAGG GUU|CCACGC UA-ACA(-UU GAU)UG|GGC 4681 GUGGGUGAGU |-CGU-UCCU AAGC------ ---------- 4921 ----GC-GAA AGGGA-AG-C GGG(UUUACA UU-)CCCGC| -AC----acg gaugugg-ag 4981 gc[ggugac- -----gcu-- ---------- ---------- --------(- -------)-- 5041 ---------- ---------- ---------- ---------- -----uu-a] uug-gggcga 5101 acac-----g cug--gcgau gg-c-gcug- -GG-CAGA(G UUGUCUUU-) UCUGUU-|UG 5161 A-ccguuug- --------c- --g|caugcg gugu-ggagu ---ccg(cuu gu-)cgggag 5221 aaacac-gca ug-------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- -----cgc-g gGC-----AG 5341 -AGCGCCGG( -ggcuuuu)C CGGCGU-c-c agcucg---c -caucg--ac ggcC-CUUGA 5401 AAc-uuugcc -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ---------- -ugcuga--- ---------- ----uuuuag aaucnacg-- cc-gugGCGU 5581 A|CC--GAUC ACC(GCAUCA )GG|UCC-CC AAGGU(GAAC A)GCCUCU-| GSUCA-||A- 5641 uauG--AAAA AU-GCAG-GU A-AGGGAAGU CGGCAA-AUU -AGACCCGUA AC(UUUG)GG 5701 AAAAGGGUU| GGCUCUAGU- ---------- -(-----)---- -------ACU AGAACU|G(- --CAA)CGGG 6601 CAAAGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--GG G|CCG(---- 6661 uggc)CGG-- ---------- --U-GAUGAC GCAAUGUG-- AUUUCUGCUC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaga) -----uucaa ----UCAAGC G|CGGGUAAA 6781 C|AGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCU ACUGU-CCCU AUCUGCU-UC 6901 UA|GCGAAAC C|ACA-GCCG AG(GGAA-CG GG)CUCGGCG -A-AAU-CGG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AUUCU A---AUU-UU |GUGAAGCAA GUUGGGAGGU 7021 GUAGCAUAGG UGGGAGCG-- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -CUUG)---- 7141 --------CG C-GUCCGUGA AA-UACCACU |ACUCCCAG- -UCUUG-CUU UACUUAc--- 7201 ------(--- --)------| --<---u--a gguaagcgug gaugagucuu acgacuucau 7261 uuuagaacca aaccagcuug cugguaacca cagccua--- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- ---------- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- -------->g cACAC-AUUU A-GGAG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUUC (UACAAGACA AC-)GAAG-G U|G|U|CCA- AAGAU-AAGC |UCAGU-GAG 7621 -A(ACA---- GAAA)UCUCA CGUAGC|GC( A|A--AAGG) GUAAAAG-CU U-GUUUUAUU 7681 -UUGAUUU(u c--agugc-- )GAGUCGAAA ACGC(-GAAA )GCGUGG|CC --UAU|CGA- 7741 UCCUUUcac- ---------- ---------- ---------- --(----)-- ---------- 7801 ---------- ---------- --ga-uuc(- -gaga-u--u u---)----- ---------- 7861 -----gaa|g cgAGAG-GUG UC|AGA--AA AGU-ACCA|C AGG|GAU~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS G.acerosa 9262 bp RNA RNA 02-SEP-1998 DEFINITION Gelidiella acerosa.. ACCESSION No information KEYWORDS No information. SOURCE Gelidiella acerosa. ORGANISM Gelidiella acerosa. REFERENCE 1 (bases 1 to 363) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE A multigene phylogeny of the Gelidiales including nuclear large-subunit rRNA sequence data JOURNAL J. Appl. Phycol. (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF039551 LOCUS AF039551 2516 bp DNA PLN 02-SEP-1998 DEFINITION Gelidiella acerosa large subunit ribosomal RNA gene, partial sequence. ACCESSION AF039551 NID g3510598 KEYWORDS . SOURCE Gelidiella acerosa. ORGANISM Gelidiella acerosa Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Gelidiella. REFERENCE 1 (bases 1 to 2516) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE A multigene phylogeny of the Gelidiales including nuclear large-subunit rRNA sequence data JOURNAL J. Appl. Phycol. (1998) In press REFERENCE 2 (bases 1 to 2516) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE Direct Submission JOURNAL Submitted (22-DEC-1997) CMSR, UNCW, 7205 Wrightsville Avenue, Wilmington, NC 28403, USA REFERENCE 3 (bases 1 to 2516) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE Direct Submission JOURNAL Submitted (01-SEP-1998) CMSR, UNCW, 7205 Wrightsville Avenue, Wilmington, NC 28403, USA REMARK Sequence update by submitter COMMENT On Sep 2, 1998 this sequence version replaced gi:2865453. FEATURES Location/Qualifiers source 1..2516 /organism="Gelidiella acerosa" /db_xref="taxon:28867" /note="Oahu, Hawaii, USA" rRNA <1..>2516 /product="large subunit ribosomal RNA" BASE COUNT 681 a 491 c 714 g 624 t 6 others BASE COUNT 681 a 491 c 714 g 624 t 6752 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~(~~~~~~ ~)~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~gu-cagu 901 uuaggaaa-- --g-uga-c( a--ugaaaa- -u)guc-u-- ---------- --------GC 961 --|C(GUG)G |AGGG-(UGA UAGY)-CCCG UC|-cauccu gaucaggacg cuc---c--- 1021 ---guaaaca gaauauuu-c aaau------ ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUA GUU(----UG 1141 GGAA)UGCUG CUCUAA---- -UUGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUCU-- ---------- ---------- ---------- )CAU-CAAAG GCU----AAA 1381 UA-------- ---------- cugrU-AGGA GACCGAUAGC AAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAU- GAAA-AGCAC UUU(ga-aa- )AGAG-GGUG --AAAAGAAC C-UGAAAC-C 1501 GUUAC-ggg< gg---aagcg gauugcau-u auucuaaugc uaauguguuc aaccuuuuag 1561 guguauugac auuaguauuu uaucuacugu gaauuuuuga uaauugauau ugaauuauua 1621 aagauugagg gcucyacuuu gugugaggac ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- -------ggu agauaugaag augcgauacg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAGCGUGACU GCGAGUCg-a agg-gu---( ----g-uu-a 2641 a-)------- ---------- ---a-ccua- ---------- --agggcGCA GU(GAAA)GC 2701 GA[gauaaaa cucucaguuu gaggcggcau auuaucguug auaauagguc cgacc----- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- -]-------- ---------U AGAGCAUUU- 3181 -ACG-CUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCGG- AG|U-AGGGC AAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-GUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU CGAACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUUCCUC CGAAGUUUCU --(CUCA)GG 3421 AUAGC--GGG -CCGaca|-- -|-gacgu-- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 --uguUUUGU -G|CGG--UA AA-GCGAAUG AUUAGCGUA- -----UUUGG GGGC--(uau 3721 u-u)--GCCU U-CGG-|ACG AUUC-UCAAA CUUUC-AAUG |CGCAAG-gg -uguugcug- 3781 --cuuaauug agcuu-ca-c cggua----- ---------- ---------- ---------- 3841 ---------- ---------- ----aaaacg u|CG-GCCCU --GU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUACGG(GA- UGAA)CCG-- UAAGCAU--- GGUUAAG--G 3961 U|GCCA-AAC U-A--CU-CG CU-ua--u-- --------ag auccca---- cAAAAGGUGU 4021 U--GAUUCAU CGAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAAUU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- UAAGCGGGU| G|-------- --ACCGAC-- --ACCAUGC| (- -----)--uu caaau-gAGU AGGA------ 4441 --GGA|-CG- UG-GU-GA-- --------U- -U-G-UAG-- c------GAA Guau------ 4501 a-ugu(gcga -)acauaua- UUG|A-ACG| A--UCACUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAG- C(gagau--- ---------- ---------- ---------- 4621 --)CCUUGAA |GGGCGAACN G-GGG|AAGG GUU|CCACGC UA-ACA(-UU GAU)UG|GGC 4681 GUGGGUGAGU |-CGU-UCCU AAGC------ ---------- 4921 ----GC-GAA AGGGA-AG-C GGG(UUUACA UU-)CCCGC| -AC----acg gaugugg-ag 4981 gc[ggugac- -----gcu-- ---------- ---------- --------(- -------)-- 5041 ---------- ---------- ---------- ---------- -----uu-a] uug-gggcga 5101 acac-----g cug--gcgau gg-c-gcug- -GG-CAGA(G UUGUCUUU-) UCUGUU-|UG 5161 A-ccguuug- --------u- --n|uaugcg gugu-ggagu ---ccg(uuu gu-)ugggag 5221 aaacac-gcg ua-------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- -----cau-g gGC-----AG 5341 -AGCGUCGG( -ggcuuau)C CGACGU-c-c agcucg---c -caucg--ac ggcC-CUUGA 5401 AAc-uuugcc -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ---------- -uacugau-- ---------- ----auuaag a-ucnacg-- cc-gugGCGU 5581 A|CC--GAUA ACC(GCAUCA )GG|UCC-CC AAGGU(GAAC A)GCCUCU-| GCUCA-||A- 5641 uauG--AAAA AU-GCAG-GU A-AGGGAAGU CGGCAA-AUU -AGACCCGUA AC(UUUG)GG 5701 AAAAGGGUU| GGCUCUAGU- ---------- -(-----)---- -------ACU AGAACU|G(- --CAA)CGGG 6601 CAAAGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAA CGCG|A--GG G|CCG(---- 6661 uggc)CGG-- ---------- --U-GAUGAC GCGUUGUG-- AUUUCUGCUC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaga) -----uucaa ----UCAAGC G|CGGGUAAA 6781 C|AGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCU ACUGU-CCCU AUCUGCU-UC 6901 UA|GCGAAAC C|ACA-GCCG AG(GGAA-CG GG)CUCGGCG -A-AAU-CGG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AUUCU A---AUU-UU |GUGAAGCAA GUUGGGAGGU 7021 GUAGCAUAGG UGGGAGCG-- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -CUUG)---- 7141 --------CG C-GUCCGUGA AA-UACCACU |ACUCCCAG- -UCUUG-CUU UACUUAc--- 7201 ------(--- --)------| --<---u--a gguaauugug gaugaguuuu acgacuugau 7261 uuuagaacca aaccagcuug cuggugacca cagccua--- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- ---------- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- -------->g cACAC-AUUU A-GGAG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUUC (UACAAGACA AC-)GAAG-G U|G|U|CCA- AAGAU-AAGC |UCAGU-GAG 7621 -A(ACA---- GAAA)UCUCA CGUAGC|GC( A|A--AAGG) GUAAAAG-CU U-GUUUUAUU 7681 -UUGAUUU(u c--agugc-- )GAGUCGAAA ACGC(-GAAA )GCGUGG|CC --UAU|CGA- 7741 UCCUUUcac- ---------- ---------- ---------- --(----)-- ---------- 7801 ---------- ---------- --ga-uuc(- -gaga-u--u u---)----- ---------- 7861 -----gaa|g cgAGAG-GUG UC|AGA--AA AGUUACCA|C AGG|GAUAAC ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS G.american 9262 bp RNA RNA 02-SEP-1998 DEFINITION Gelidium americanum.. ACCESSION No information KEYWORDS No information. SOURCE Gelidium americanum. ORGANISM Gelidium americanum. REFERENCE 1 (bases 1 to 363) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE large-subunit rRNA sequence data A multigene phylogeny of the Gelidiales including nuclear JOURNAL J. Appl. Phycol. (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF039536 LOCUS AF039536 2501 bp DNA PLN 02-SEP-1998 DEFINITION Gelidium americanum large subunit ribosomal RNA gene, partial sequence. ACCESSION AF039536 NID g3510583 KEYWORDS . SOURCE Gelidium americanum. ORGANISM Gelidium americanum Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Gelidium. REFERENCE 1 (bases 1 to 2501) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE A multigene phylogeny of the Gelidiales including nuclear large-subunit rRNA sequence data JOURNAL J. Appl. Phycol. (1998) In press REFERENCE 2 (bases 1 to 2501) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE Direct Submission JOURNAL Submitted (22-DEC-1997) CMSR, UNCW, 7205 Wrightsville Avenue, Wilmington, NC 28403, USA REFERENCE 3 (bases 1 to 2501) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE Direct Submission JOURNAL Submitted (01-SEP-1998) CMSR, UNCW, 7205 Wrightsville Avenue, Wilmington, NC 28403, USA REMARK Sequence update by submitter COMMENT On Sep 2, 1998 this sequence version replaced gi:2865438. FEATURES Location/Qualifiers source 1..2501 /organism="Gelidium americanum" /db_xref="taxon:28854" /note="Radio Island, Carteret Co., NC, USA" rRNA <1..>2501 /product="large subunit ribosomal RNA" BASE COUNT 654 a 512 c 731 g 592 t 12 others BASE COUNT 654 a 512 c 731 g 592 t 6773 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~(~~~~~~ ~)~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~gugu-cagu 901 uugggaaa-- --g-uga-c( a--uggaaa- -u)guc-c-- ---------- --------GC 961 --|C(GUG)G |AGGG-(UGA UAGN)-CCCG UC|-cauccc gaucaggacg cuc---c--- 1021 ---guaaaca gaauauuu-c agau------ ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUA GUU(----UG 1141 GGAA)UGCUG CUCUAA---- -UUGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUCU-- ---------- ---------- ---------- )CAU-CAAAG GCU----AAA 1381 UA-------- ---------- acggU-GGGA GACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAU- GAAA-AGCAC UUU(ga-aa- )AGAG-GGUG --AAAAGAAC C-UGAAAC-C 1501 GUUAC-ggg< gg---aagcg gauugcau-u auucuaguuu uaacguguuc aaccuuuuag 1561 gugcauugac guua-aaacu uaucugcugu ggasunuuga uaauunaaaa unaasuauua 1621 aagguugagg gcuccacuuu gugugaggac ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- -------agc ggau-ugacg augcgauacg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAGCGCGGGU GCGAGUCg-g aag-gu---( ----g-uaaa 2641 a-)------- ---------- ---a-ccug- ---------- --ugggcGAA GU(GAAA)GC 2701 GA[gauaaaa cucucaguuu gaggcggcau auuuucguud aaaauagguc cgacc----- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- -]-------- ---------U UGAGCAGUU- 3181 -GCG-CUGGG ACCCNAAAGA U-GGUG-AAC UAUG-CCGG- AG|U-AGGGC AAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-GUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU CGAACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUUCCUC CGAAGUUUCU --(CUCA)GG 3421 AUAGC--GGG -CCGaca|-- -|-uagug-- ---u------ ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 --uguUUUGU -G|CGG--UA AA-GCGAAUG AUUAGCGUA- -----UUUGG GGAC--(auu 3721 u-a)--GUCY Y-CAG-|ACG AUUC-UCAAA CUUUC-AAUG |CGCAAG-gs -uguugcug- 3781 --cuuaauug agcuu-ca-c cggua----- ---------- ---------- ---------- 3841 ---------- ---------- ----aaaacg u|CG-GCCCU --GU-GGGCC -ACU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUACGG(GA- UGAA)CCG-- UAAGCAU--- GGUUAAG--G 3961 C|GCCA-AAC U-A--CU-CG CU-ua--u-- --------ag auccca---- cAAAAGGUGU 4021 U--GAUUCAU CGAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(CAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAAUU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- UAAGCGGGU| G|-------- --GCCGAC-- --ACCAUGC| (- -----)--uu cagau-gAGU AGGA------ 4441 --GGA|-CG- UG-GU-GA-- --------U- -C-G-UGA-- c------GAA Guau------ 4501 g-cgu(gcga -)acgngua- UCG|A-ACG| A--UCACUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAG- C(gagau--- ---------- ---------- ---------- 4621 --)CCUUGAA |GGGCGAAGU G-GGG|AAGG GUU|CCACGC UA-ACA(-UU GAU)UG|GGC 4681 GUGGGUGAGU |-CGU-UCCU AAGC------ ---------- 4921 ----GC-GAA AGGGA-AG-C GGG(UUUACA UU-)CCCGC| -AC----acg gaugugg-ag 4981 gc[ggugac- -----gcu-- ---------- ---------- --------(- -------)-- 5041 ---------- ---------- ---------- ---------- -----uu-a] uug-gggcga 5101 acac-----g cug--gcgau gg-c-gcug- -GG-CAGA(G UUGUCUUU-) UCUGUU-|UG 5161 A-ccguuug- --------c- --g|caugcg gugu-ggagu ---ccg(cuu gu-)cgggag 5221 aaacac-gca ug-------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- -----cgc-g gGC-----AG 5341 -AGCGCCGG( -ggcuuau)C CGGCGU-c-c agcucg---c -caucg--ac ggcC-CUUGA 5401 AAc-uuugcc -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ---------- -ugcugau-- ---------- ----uuuaga aucc-acg-- cc-gugGCGU 5581 A|CC--GAUC ACC(GCAUCA )GG|UCC-CC AAGGU(GAAC A)GCCUCU-| GCUCA-||A- 5641 uauG--AAAA AU-GCAG-GU A-AGGGAAGU CGGCAA-AUU -AGACCCGUA AC(UUUG)GG 5701 AAAAGGGUU| GGCUCUAGU- ---------- -(-----)---- -------ACU AGAACU|G(- --CAA)CGGG 6601 CAAAGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--GG G|CCG(---- 6661 uggc)CGG-- ---------- --U-GAUGAC GCAAUGUG-- AUUUCUGCUC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaga) -----uucaa ----UCAAGC G|CGGGUAAA 6781 C|AGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCU ACUGU-CCCU AUCUGCU-UC 6901 UA|GCGAAAC C|ACA-GCCG AG(GGAA-CG GG)CUCGGCG -A-AAU-CGG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AUUCU A---AUU-UU |GUGAAGCAA GUUGGGAGGU 7021 GUAGCAUAGG UGGGAGCG-- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -CUUG)---- 7141 --------CG C-GUCCGUGA AA-UACCACU |ACUCCCAG- -UCUUG-CUU UACUUAc--- 7201 ------(--- --)------| --<---u--a gguaagcgug gaugagucuu acgacuucau 7261 uuuagaacca aaccagcucg cuggugacca cagccua--- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- ---------- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- -------->g cACAC-AUUU A-GGAG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUUC (UACAAGACA AC-)GAAG-G U|G|U|CCA- AAGAU-AAGC |UCAGU-GAG 7621 -A(ACA---- GAAA)UCUCA CGUAGC|GC( A|A--AAGG) GUAAAAG-CU U-GUUUUAUU 7681 -UUGAUUU(u c--agugc-- )GAGUCGAAA ACGC(-GAAA )GCGUGG|CC --UAU|CGA- 7741 UCCUUUcac- ---------- ---------- ---------- --(----)-- ---------- 7801 ---------- ---------- --ga-uuc(- -gaga-u--u u---)----- ---------- 7861 -----gaa|g cgAGAG-GUG UC|AGA--AA AGU~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS G.caulacan 9262 bp RNA RNA 02-SEP-1998 DEFINITION Gelidium caulacantheum.. ACCESSION No information KEYWORDS No information. SOURCE Gelidium caulacantheum. ORGANISM Gelidium caulacantheum. REFERENCE 1 (bases 1 to 363) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE A multigene phylogeny of the Gelidiales including nuclear large-subunit rRNA sequence data JOURNAL J. Appl. Phycol. (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF039544 LOCUS AF039544 2505 bp DNA PLN 02-SEP-1998 DEFINITION Gelidium caulacantheum large subunit ribosomal RNA gene, partial sequence. ACCESSION AF039544 NID g3510591 KEYWORDS . SOURCE Gelidium caulacantheum. ORGANISM Gelidium caulacantheum Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Gelidium. REFERENCE 1 (bases 1 to 2505) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE A multigene phylogeny of the Gelidiales including nuclear large-subunit rRNA sequence data JOURNAL J. Appl. Phycol. (1998) In press REFERENCE 2 (bases 1 to 2505) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE Direct Submission JOURNAL Submitted (22-DEC-1997) CMSR, UNCW, 7205 Wrightsville Avenue, Wilmington, NC 28403, USA REFERENCE 3 (bases 1 to 2505) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE Direct Submission JOURNAL Submitted (01-SEP-1998) CMSR, UNCW, 7205 Wrightsville Avenue, Wilmington, NC 28403, USA REMARK Sequence update by submitter COMMENT On Sep 2, 1998 this sequence version replaced gi:2865446. FEATURES Location/Qualifiers source 1..2505 /organism="Gelidium caulacantheum" /db_xref="taxon:28016" /note="Porirua Harbor, North Island, New Zealand" rRNA <1..>2505 /product="large subunit ribosomal RNA" BASE COUNT 656 a 513 c 735 g 601 t BASE COUNT 656 a 513 c 735 g 601 t 6757 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~(~~~~~~ ~)~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~cagu 901 uugagaaa-- --g-uga-c( a--uggaaa- -u)guc-c-- ---------- --------GC 961 --|C(GUG)G |AGGG-(UGA UAGC)-CCCG UC|-caucuc gaucaggacg cuc---c--- 1021 ---guaaaca gaauauuu-c agau------ ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUA GUU(----UG 1141 GGAA)UGCUG CUCUAA---- -UUGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUCU-- ---------- ---------- ---------- )CAU-CAAAG GCU----AAA 1381 UA-------- ---------- auggU-AGGA GACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAU- GAAA-AGCAC UUU(ga-aa- )AGAG-GGUG --AAAAGAAC C-UGAAAC-C 1501 GUUAC-ggg< gg---aagcg gauugcau-u auucuaauuu uaacguguuc aaccuuuuag 1561 gugcauugac guua-aaauu uaucuguugu ggauuuuuaa uaaucgauau uggauuauug 1621 aagauugagg gcuccacuuu gugugaggac ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- -------aac ggau-ugacg augcgauacg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAGCGCGGGU GCGAGUCg-g aag-gu---( ----g-uaaa 2641 a-)------- ---------- ---a-ccug- ---------- --ugggcGAA GU(GAAA)GC 2701 GA[gauaaaa cucucaguuu gaggcggcau auuuucguug aaaauagguc cgacc----- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- -]-------- ---------U UGAGCAGUU- 3181 -GCG-CUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCGG- AG|U-AGGGC AAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-GUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU CGAACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUUCCUC CGAAGUUUCU --(CUCA)GG 3421 AUAGC--GGG -CCGaca|-- -|-uagag-- ---u------ ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 --uguUUUGU -G|CGG--UA AA-GCGAAUG AUUAGCGUA- -----UUUGG GGGC--(guu 3721 u-a)--GCCU U-CAG-|ACG AUUC-UCAAA CUUUC-AAUG |CGCAAG-gg -uguugcug- 3781 --cuuaauug agcuu-ca-c cggua----- ---------- ---------- ---------- 3841 ---------- ---------- ----aaaacg u|CG-GCCCU --GU-GGGCC -ACU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUACGG(GA- UGAA)CCG-- UAAGCAC--- GGUUAAG--G 3961 C|GCCA-AAC U-A--CU-CG CU-ua--u-- --------ag auccca---- cAAAAGGUGU 4021 U--GAUUCAU CGAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(CAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAAUU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- UAAGCGGGU| G|-------- --GCCGAC-- --ACCGUGC| (- -----)--uu cagau-gAGU AGGA------ 4441 --GGA|-CG- UG-GU-GA-- --------U- -C-G-UGA-- c------GAA Guau------ 4501 g-cgu(gcga -)acgugua- UCG|A-ACG| A--UCACUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAG- C(gagau--- ---------- ---------- ---------- 4621 --)CCUUGAA |GGGCGAACG G-GGG|AAGG GUU|CCACGC UA-ACA(-UU GAU)UG|GGC 4681 GUGGGUGAGU |-CGU-UCCU AAGC------ ---------- 4921 ----GC-GAA AGGGA-AG-C GGG(UUUACA UU-)CCCGC| -AC----acg gaugugg-ag 4981 gc[ggugac- -----gcu-- ---------- ---------- --------(- -------)-- 5041 ---------- ---------- ---------- ---------- -----uu-a] uug-gggcga 5101 acac-----g cug--gcgau gg-c-gcug- -GG-CAGA(G UUGUCUUU-) UCUGUU-|UG 5161 A-ccguuug- --------c- --g|caugcg gucu-ggagu ---ccg(cuu gu-)cgggag 5221 aaacac-gca ug-------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- -----cgc-g gGC-----AG 5341 -AGCGCCGG( -ggcuuuu)C CGGCGU-c-c agcucg---c -caucg--ac ggcC-CUUGA 5401 AAc-uuugcc -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ---------- -ugcugau-- ---------- ----uuuaga aucc-acg-- cc-gugGCGU 5581 A|CC--GAUC ACC(GCAUCA )GG|UCC-CC AAGGU(GAAC A)GCCUCU-| GCUCA-||A- 5641 uauG--AAAA AU-GCAG-GU A-AGGGAAGU CGGCAA-AUU -AGACCCGUA AC(UUUG)GG 5701 AAAAGGGUU| GGCUCUAGU- ---------- -(-----)---- -------ACU AGAACU|G(- --CAA)CGGG 6601 CAAAGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--GG G|CCG(---- 6661 uggc)CGG-- ---------- --U-GAUGAC GCAAUGUG-- AUUUCUGCUC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaga) -----uucaa ----UCAAGC G|CGGGUAAA 6781 C|AGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCU ACUGU-CCCU AUCUGCU-UC 6901 UA|GCGAAAC C|ACA-GCCG AG(GGAA-CG GG)CUCGGCG -A-AAU-CGG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AUUCU A---AUU-UU |GUGAAGCAA GUUGGGAGGU 7021 GUAGCAUAGG UGGGAGCG-- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -CUUG)---- 7141 --------CG C-GUCCGUGA AA-UACCACU |ACUCCCAG- -UCUUG-CUU UACUUAc--- 7201 ------(--- --)------| --<---u--a gguaagcgug gaugagucuu acgacuucau 7261 uuuagaacca aaccagcuug cugguaacca cagccua--- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- ---------- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- -------->g cACAC-AUUU A-GGAG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUUC (UACAAGACA AC-)GAAG-G U|G|U|CCA- AAGAU-AAGC |UCAGU-GAG 7621 -A(ACA---- GAAA)UCUCA CGUAGC|GC( A|A--AAGG) GUAAAAG-CU U-GUUUUAUU 7681 -UUGAUUU(u c--agugc-- )GAGUCGAAA ACGC(-GAAA )GCGUGG|CC --UAU|CGA- 7741 UCCUUUcac- ---------- ---------- ---------- --(----)-- ---------- 7801 ---------- ---------- --ga-uuc(- -gaga-u--u u---)----- ---------- 7861 -----gaa|g cgAGAG-GUG UC|AGA--AA AGU-ACCA|C AGG|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS G.floridan 9262 bp RNA RNA 02-SEP-1998 DEFINITION Gelidium floridanum.. ACCESSION No information KEYWORDS No information. SOURCE Gelidium floridanum. ORGANISM Gelidium floridanum. REFERENCE 1 (bases 1 to 363) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE A multigene phylogeny of the Gelidiales including nuclear large-subunit rRNA sequence data JOURNAL J. Appl. Phycol. (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF039537 LOCUS AF039537 2508 bp DNA PLN 02-SEP-1998 DEFINITION Gelidium floridanum large subunit ribosomal RNA gene, partial sequence. ACCESSION AF039537 NID g3510584 KEYWORDS . SOURCE Gelidium floridanum. ORGANISM Gelidium floridanum Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Gelidium. REFERENCE 1 (bases 1 to 2508) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE A multigene phylogeny of the Gelidiales including nuclear large-subunit rRNA sequence data JOURNAL J. Appl. Phycol. (1998) In press REFERENCE 2 (bases 1 to 2508) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE Direct Submission JOURNAL Submitted (22-DEC-1997) CMSR, UNCW, 7205 Wrightsville Avenue, Wilmington, NC 28403, USA REFERENCE 3 (bases 1 to 2508) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE Direct Submission JOURNAL Submitted (01-SEP-1998) CMSR, UNCW, 7205 Wrightsville Avenue, Wilmington, NC 28403, USA REMARK Sequence update by submitter COMMENT On Sep 2, 1998 this sequence version replaced gi:2865439. FEATURES Location/Qualifiers source 1..2508 /organism="Gelidium floridanum" /db_xref="taxon:28850" /note="Sebastian Inlet, Indian River Co., FL, USA" rRNA <1..>2508 /product="large subunit ribosomal RNA" BASE COUNT 661 a 513 c 734 g 599 t 1 others BASE COUNT 661 a 513 c 734 g 599 t 6755 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~(~~~~~~ ~)~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~gu 901 uugggaaa-- --g-uga-c( a--uggaaa- -u)guc-c-- ---------- --------GC 961 --|C(GUG)G |AGGG-(UGA UAGC)-CCCG UC|-cauccc gaucaggacg cuc---c--- 1021 ---guaaaca gaauauuu-c agau------ ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUA GUU(----UG 1141 GGAA)UGCUG CUCUAA---- -UUGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUCU-- ---------- ---------- ---------- )CAU-CAAAG GCU----AAA 1381 UA-------- ---------- acggU-GGGA GACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAU- GAAA-AGCAC UUU(ga-aa- )AGAG-GGUG --AAAAGAAC C-UGAAAC-C 1501 GUUAC-ggg< gg---aagcg gauugcau-u auucuaguuu uaacguguuc aaccuuuuag 1561 gugcauugac guua-aaacu uaucugcugu ggauuuuuga uaauugaaau ugaauuauua 1621 aagauugagg gcuccacuuu gugugaggac ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- -------agc ggau-ugacg augcgauacg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAGCGCGGGU GCGAGUCg-g aag-gu---( ----g-uaaa 2641 a-)------- ---------- ---a-ccug- ---------- --ugggcGAA GU(GAAA)GC 2701 GA[gauaaaa cucucaguuu gaggcggcau auuuucguug aaaauagguc cgacc----- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- -]-------- ---------U UGAGCAGUU- 3181 -GCG-CUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCGG- AG|U-AGGGC AAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-GUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU CGAACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUUCCUC CGAAGUUUCU --(CUCA)GG 3421 AUAGC--GGG -CCGaca|-- -|-uagug-- ---u------ ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 --uguUUUGU -G|CGG--UA AA-GCGAAUG AUUAGCGUA- -----UUUGG GGAC--(auu 3721 u-a)--GUCU U-CAG-|ACG AUUC-UCAAA CUUUC-AAUG |CGCAAG-gg -uguugcug- 3781 --cuuaauug agcuu-ca-c cggua----- ---------- ---------- ---------- 3841 ---------- ---------- ----aaaacg u|CG-GCCCU --GU-GGGCC -ACUUUUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUACGG(GA- UGAA)CCG-- UAAGCAU--- GGUUAAG--G 3961 C|GCCA-AAC U-A--CU-CG CU-ua--u-- --------ag auccca---- cAAAAGGUGU 4021 U--GAUUCAU CGAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(CAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAAUU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- UAAGCGGGU| G|-------- --GCCGAC-- --ACCAUGC| (- -----)--uu cagau-gAGU AGGA------ 4441 --GGA|-CG- UG-GU-GA-- --------U- -C-G-UGA-- c------GAA Guau------ 4501 g-cgu(gcga -)acgngua- UCG|A-ACG| A--UCACUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAG- C(gagau--- ---------- ---------- ---------- 4621 --)CCUUGAA |GGGCGAAGU G-GGG|AAGG GUU|CCACGC UA-ACA(-UU GAU)UG|GGC 4681 GUGGGUGAGU |-CGU-UCCU AAGC------ ---------- 4921 ----GC-GAA AGGGA-AG-C GGG(UUUACA UU-)CCCGC| -AC----acg gaugugg-ag 4981 gc[ggugac- -----gcu-- ---------- ---------- --------(- -------)-- 5041 ---------- ---------- ---------- ---------- -----uu-a] uug-gggcga 5101 acac-----g cug--gcgau gg-c-gcug- -GG-CAGA(G UUGUCUUU-) UCUGUU-|UG 5161 A-ccguuug- --------c- --g|caugcg gugu-ggagu ---ccg(cuu gu-)cgggag 5221 aaacac-gca ug-------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- -----cgc-g gGC-----AG 5341 -AGCGCCGG( -ggcuuau)C CGGCGU-c-c agcucg---c -caucg--ac ggcC-CUUGA 5401 AAc-uuugcc -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ---------- -ugcugau-- ---------- ----uuuaga aucc-acg-- cc-gugGCGU 5581 A|CC--GAUC ACC(GCAUCA )GG|UCC-CC AAGGU(GAAC A)GCCUCU-| GCUCA-||A- 5641 uauG--AAAA AU-GCAG-GU A-AGGGAAGU CGGCAA-AUU -AGACCCGUA AC(UUUG)GG 5701 AAAAGGGUU| GGCUCUAGU- ---------- -(-----)---- -------ACU AGAACU|G(- --CAA)CGGG 6601 CAAAGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--GG G|CCG(---- 6661 uggc)CGG-- ---------- --U-GAUGAC GCAAUGUG-- AUUUCUGCUC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaga) -----uucaa ----UCAAGC G|CGGGUAAA 6781 C|AGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCU ACUGU-CCCU AUCUGCU-UC 6901 UA|GCGAAAC C|ACA-GCCG AG(GGAA-CG GG)CUCGGCG -A-AAU-CGG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AUUCU A---AUU-UU |GUGAAGCAA GUUGGGAGGU 7021 GUAGCAUAGG UGGGAGCG-- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -CUUG)---- 7141 --------CG C-GUCCGUGA AA-UACCACU |ACUCCCAG- -UCUUG-CUU UACUUAc--- 7201 ------(--- --)------| --<---u--a gguaagcgug gaugagucuu acgacuucau 7261 uuuagaacca aaccagcucg cuggugacca cagccua--- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- ---------- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- -------->g cACAC-AUUU A-GGAG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUUC (UACAAGACA AC-)GAAG-G U|G|U|CCA- AAGAU-AAGC |UCAGU-GAG 7621 -A(ACA---- GAAA)UCUCA CGUAGC|GC( A|A--AAGG) GUAAAAG-CU U-GUUUUAUU 7681 -UUGAUUU(u c--agugc-- )GAGUCGAAA ACGC(-GAAA )GCGUGG|CC --UAU|CGA- 7741 UCCUUUcac- ---------- ---------- ---------- --(----)-- ---------- 7801 ---------- ---------- --ga-uuc(- -gaga-u--u u---)----- ---------- 7861 -----gaa|g cgAGAG-GUG UC|AGA--AA AGU-ACCA|C AGG|GAUA~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS G.latifoli 9262 bp RNA RNA 02-SEP-1998 DEFINITION Gelidium latifolium.. ACCESSION No information KEYWORDS No information. SOURCE Gelidium latifolium. ORGANISM Gelidium latifolium. REFERENCE 1 (bases 1 to 363) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE large-subunit rRNA sequence data A multigene phylogeny of the Gelidiales including nuclear JOURNAL J. Appl. Phycol. (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF039540 LOCUS AF039540 2512 bp DNA PLN 02-SEP-1998 DEFINITION Gelidium latifolium large subunit ribosomal RNA gene, partial sequence. ACCESSION AF039540 NID g3510587 KEYWORDS . SOURCE Gelidium latifolium. ORGANISM Gelidium latifolium Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Gelidium. REFERENCE 1 (bases 1 to 2512) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE A multigene phylogeny of the Gelidiales including nuclear large-subunit rRNA sequence data JOURNAL J. Appl. Phycol. (1998) In press REFERENCE 2 (bases 1 to 2512) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE Direct Submission JOURNAL Submitted (22-DEC-1997) CMSR, UNCW, 7205 Wrightsville Avenue, Wilmington, NC 28403, USA REFERENCE 3 (bases 1 to 2512) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE Direct Submission JOURNAL Submitted (01-SEP-1998) CMSR, UNCW, 7205 Wrightsville Avenue, Wilmington, NC 28403, USA REMARK Sequence update by submitter COMMENT On Sep 2, 1998 this sequence version replaced gi:2865442. FEATURES Location/Qualifiers source 1..2512 /organism="Gelidium latifolium" /db_xref="taxon:28851" /note="Plouguerneau, Brittany, France" rRNA <1..>2512 /product="large subunit ribosomal RNA" BASE COUNT 659 a 517 c 737 g 598 t 1 others BASE COUNT 659 a 517 c 737 g 598 t 6751 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~(~~~~~~ ~)~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~cagu 901 uugggaaa-- --g-uga-c( a--uggaaa- -u)guc-c-- ---------- --------GC 961 --|C(GUG)G |AGGG-(UGA UAGC)-CCCG UC|-cauccc gaucaggacg cuc---c--- 1021 ---guaaaca gaauauuu-c agau------ ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUA GUU(----UG 1141 GGAA)UGCUG CUCUAA---- -UUGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUCU-- ---------- ---------- ---------- )CAU-CAAAG GCU----AAA 1381 UA-------- ---------- acggU-GGGA GACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAU- GAAA-AGCAC UUU(ga-aa- )AGAG-GGUG --AAAAGAAC C-UGAAAC-C 1501 GUUAC-ggg< gg---aagcg gauugcau-u auucuaguuu uaacguguuc aaccuuuuag 1561 gugcauugac guua-aaacu uaucugcugu ggauuuuuga uaauugaaaa ugaauuauua 1621 aagauugagg gcuccacuuu gugugaggac ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- -------agc ggau-ugacg augcgauacg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAGCGCGGGU GCGAGUCg-g aag-gu---( ----g-uaaa 2641 a-)------- ---------- ---a-ccug- ---------- --ugggcGAA GU(GAAA)GC 2701 GA[gauaaaa cucucaguuu gaggcggcau auuuucguug aaaauagguc cgacc----- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- -]-------- ---------U UGAGCAGUU- 3181 -GCG-CUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCGG- AG|U-AGGGC AAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-GUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU CGAACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUUCCUC CGAAGUUUCU --(CUCA)GG 3421 AUAGC--GGG -CCGaca|-- -|-uagug-- ---u------ ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 --uguUUUGU -G|CGG--UA AA-GCGAAUG AUUAGCGUA- -----UUUGG GGAC--(auu 3721 u-u)--GUCU U-CAG-|ACG AUUC-UCAAA CUUUC-AAUG |CGCAAG-gg -uguugcug- 3781 --cuuaauug agcuu-ca-c cggua----- ---------- ---------- ---------- 3841 ---------- ---------- ----aaaacg u|CG-GCCCU --GU-GGGCC -ACUUUUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUACGG(GA- UGAA)CCG-- UAAGCAU--- GGUUAAG--G 3961 C|GCCA-AAC U-A--CU-CG CU-ua--u-- --------ag auccca---- cAAAAGGUGU 4021 U--GAUUCAU CGAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(CAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAAUU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- UAAGCGGGU| G|-------- --GCCGAC-- --ACCAUGC| (- -----)--uu cagau-gAGU AGGA------ 4441 --GGA|-CG- UG-GU-GA-- --------U- -C-G-UGA-- c------GAA Guau------ 4501 g-cgu(gcga -)acgngua- UCG|A-ACG| A--UCACUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAG- C(gagau--- ---------- ---------- ---------- 4621 --)CCUUGAA |GGGCGAAGU G-GGG|AAGG GUU|CCACGC UA-ACA(-UU GAU)UG|GGC 4681 GUGGGUGAGU |-CGU-UCCU AAGC------ ---------- 4921 ----GC-GAA AGGGA-AG-C GGG(UUUACA UU-)CCCGC| -AC----acg gaugugg-ag 4981 gc[ggugac- -----gcu-- ---------- ---------- --------(- -------)-- 5041 ---------- ---------- ---------- ---------- -----uu-a] uug-gggcga 5101 acac-----g cug--gcgau gg-c-gcug- -GG-CAGA(G UUGUCUUU-) UCUGUU-|UG 5161 A-ccguuug- --------c- --g|caugcg gugu-ggagu ---ccg(cuu gu-)cgggag 5221 aaacac-gca ug-------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- -----cgc-g gGC-----AG 5341 -AGCGCCGG( -ggcuuau)C CGGCGU-c-c agcucg---c -caucg--ac ggcC-CUUGA 5401 AAc-uuugcc -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ---------- -ugcugau-- ---------- ----uuuaga aucc-acg-- cc-gugGCGU 5581 A|CC--GAUC ACC(GCAUCA )GG|UCC-CC AAGGU(GAAC A)GCCUCU-| GCUCA-||A- 5641 uauG--AAAA AU-GCAG-GU A-AGGGAAGU CGGCAA-AUU -AGACCCGUA AC(UUUG)GG 5701 AAAAGGGUU| GGCUCUAGU- ---------- -(-----)---- -------ACU AGAACU|G(- --CAA)CGGG 6601 CAAAGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--GG G|CCG(---- 6661 uggc)CGG-- ---------- --U-GAUGAC GCAAUGUG-- AUUUCUGCUC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaga) -----uucaa ----UCAAGC G|CGGGUAAA 6781 C|AGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCU ACUGU-CCCU AUCUGCU-UC 6901 UA|GCGAAAC C|ACA-GCCG AG(GGAA-CG GG)CUCGGCG -A-AAU-CGG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AUUCU A---AUU-UU |GUGAAGCAA GUUGGGAGGU 7021 GUAGCAUAGG UGGGAGCG-- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -CUUG)---- 7141 --------CG C-GUCCGUGA AA-UACCACU |ACUCCCAG- -UCUUG-CUU UACUUAc--- 7201 ------(--- --)------| --<---u--a gguaagcgug gaugagucuu acgacuucau 7261 uuuagaacca aaccagcucg cuggugacca cagccua--- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- ---------- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- -------->g cACAC-AUUU A-GGAG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUUC (UACAAGACA AC-)GAAG-G U|G|U|CCA- AAGAU-AAGC |UCAGU-GAG 7621 -A(ACA---- GAAA)UCUCA CGUAGC|GC( A|A--AAGG) GUAAAAG-CU U-GUUUUAUU 7681 -UUGAUUU(u c--agugc-- )GAGUCGAAA ACGC(-GAAA )GCGUGG|CC --UAU|CGA- 7741 UCCUUUcac- ---------- ---------- ---------- --(----)-- ---------- 7801 ---------- ---------- --ga-uuc(- -gaga-u--u u---)----- ---------- 7861 -----gaa|g cgAGAG-GUG UC|AGA--AA AGU-ACCA|C AGG|GAUAAC ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS G.pusillum 9262 bp RNA RNA 02-SEP-1998 DEFINITION Gelidium pusillum.. ACCESSION No information KEYWORDS No information. SOURCE Gelidium pusillum. ORGANISM Gelidium pusillum. REFERENCE 1 (bases 1 to 363) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE A multigene phylogeny of the Gelidiales including nuclear large-subunit rRNA sequence data JOURNAL J. Appl. Phycol. (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF039542 LOCUS AF039542 2497 bp DNA PLN 02-SEP-1998 DEFINITION Gelidium pusillum large subunit ribosomal RNA gene, partial sequence. ACCESSION AF039542 NID g3510589 KEYWORDS . SOURCE Gelidium pusillum. ORGANISM Gelidium pusillum Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Gelidium. REFERENCE 1 (bases 1 to 2497) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE A multigene phylogeny of the Gelidiales including nuclear large-subunit rRNA sequence data JOURNAL J. Appl. Phycol. (1998) In press REFERENCE 2 (bases 1 to 2497) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE Direct Submission JOURNAL Submitted (22-DEC-1997) CMSR, UNCW, 7205 Wrightsville Avenue, Wilmington, NC 28403, USA REFERENCE 3 (bases 1 to 2497) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE Direct Submission JOURNAL Submitted (01-SEP-1998) CMSR, UNCW, 7205 Wrightsville Avenue, Wilmington, NC 28403, USA REMARK Sequence update by submitter COMMENT On Sep 2, 1998 this sequence version replaced gi:2865444. FEATURES Location/Qualifiers source 1..2497 /organism="Gelidium pusillum" /db_xref="taxon:31403" /note="Fedje, Hordaland, Norway" rRNA <1..>2497 /product="large subunit ribosomal RNA" BASE COUNT 651 a 514 c 735 g 595 t 2 others BASE COUNT 651 a 514 c 735 g 595 t 6767 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~(~~~~~~ ~)~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-cagu 901 uugggaaa-- --g-uga-c( a--uggaaa- -u)guc-c-- ---------- --------GC 961 --|A(NUG)G |AGGG-(UGA UAGC)-CCCG UC|-cauccc gaucaggacg cuc---c--- 1021 ---guaaaca gaauauuu-c agau------ ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUA GUU(----UG 1141 GGAA)UGCUG CUCUAA---- -UUGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUCU-- ---------- ---------- ---------- )CAU-CAAAG GCU----AAA 1381 UA-------- ---------- acggU-GGGA GACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAU- GAAA-AGCAC UUU(ga-aa- )AGAG-GGUG --AAAAGAAC C-UGAAAC-C 1501 GUUAC-ggg< gg---aagcg gauugcau-u auucuaguuu uaacguguuc aaccuuuuag 1561 gugcauugac guua-aaacu uaucugcugu ggauuuucga uaauugaaau ugaauuauug 1621 aagauugagg gcuccacuuu gugugaggac ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- -------agc ggau-ugacg augcgauacg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAGCGCGGGU GCGAGUCg-g aag-gu---( ----g-uaaa 2641 a-)------- ---------- ---a-ccug- ---------- --ugggcGAA GU(GAAA)GC 2701 GA[gauaaaa cucucaguuu gaggcggcau auuuucguug aaaauagguc cgacc----- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- -]-------- ---------U UGAGCAGUU- 3181 -GCG-CUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCGG- AG|U-AGGGC AAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-GUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU CGAACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUUCCUC CGAAGUUUCU --(CUCA)GG 3421 AUAGC--GGG -CCGaca|-- -|-uagug-- ---u------ ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 --uguUUUGU -G|CGG--UA AA-GCGAAUG AUUAGCGUA- -----UUUGG GGAC--(auu 3721 u-a)--GUCU U-CAG-|ACG AUUC-UCAAA CUUUC-AAUG |CGCAAG-gg -uguugcug- 3781 --cuuaauug agcuu-ca-c cggua----- ---------- ---------- ---------- 3841 ---------- ---------- ----aaaacg u|CG-GCCCU --GU-GGGCC -ACU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUACGG(GA- UGAA)CCG-- UAAGCAU--- GGUUAAG--G 3961 C|GCCA-AAC U-A--CU-CG CU-ua--u-- --------ag auccca---- cAAAAGGUGU 4021 U--GAUUCAU CGAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(CAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAAUU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- UAAGCGGGU| G|-------- --GCCGAC-- --ACCAUGC| (- -----)--uu cagau-gAGU AGGA------ 4441 --GGA|-CG- UG-GU-GA-- --------U- -C-G-UGA-- c------GAA Guau------ 4501 g-cgu(gcga -)acgugua- UCG|A-ACG| A--UCACUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAG- C(gagau--- ---------- ---------- ---------- 4621 --)CCUUGAA |GGGCGAAGU G-GGG|AAGG GUU|CCACGC UA-ACA(-UU GAU)UG|GGC 4681 GUGGGUGAGU |-CGU-UCCU AAGC------ ---------- 4921 ----GC-GAA AGGGA-AG-C GGG(UUUACA UU-)CCCGC| -AC----acg gaugugg-ag 4981 gc[ggugac- -----gcu-- ---------- ---------- --------(- -------)-- 5041 ---------- ---------- ---------- ---------- -----uu-a] uug-gggcga 5101 acac-----g cug--gcgau gg-c-gcug- -GG-CAGA(G UUGUCUUU-) UCUGUU-|UG 5161 A-ccguuug- --------c- --g|caugcg gugu-ggagu ---ccg(cuu gu-)cgggag 5221 aaacac-gca ug-------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- -----cgc-g gGC-----AG 5341 -AGCGCCGG( -ggcuuau)C CGGCGU-c-c agcucg---c -caucg--ac ggcC-CUUGA 5401 AAc-uuugcc -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ---------- -ugcuggu-- ---------- ----uuuaga nucc-acg-- cc-gugGCGU 5581 A|CC--GAUC ACC(GCAUCA )GG|UCC-CC AAGGU(GAAC A)GCCUCU-| GCUCA-||A- 5641 uauG--AAAA AU-GCAG-GU A-AGGGAAGU CGGCAA-AUU -AGACCCGUA AC(UUUG)GG 5701 AAAAGGGUU| GGCUCUAGU- ---------- -(-----)---- -------ACU AGAACU|G(- --CAA)CGGG 6601 CAAAGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--GG G|CCG(---- 6661 uggc)CGG-- ---------- --U-GAUGAC GCAAUGUG-- AUUUCUGCUC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaga) -----uucaa ----UCAAGC G|CGGGUAAA 6781 C|AGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCU ACUGU-CCCU AUCUGCU-UC 6901 UA|GCGAAAC C|ACA-GCCG AG(GGAA-CG GG)CUCGGCG -A-AAU-CGG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AUUCU A---AUU-UU |GUGAAGCAA GUUGGGAGGU 7021 GUAGCAUAGG UGGGAGCG-- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -CUUG)---- 7141 --------CG C-GUCCGUGA AA-UACCACU |ACUCCCAG- -UCUUG-CUU UACUUAc--- 7201 ------(--- --)------| --<---u--a gguaagcgug gaugagucuu acgacuucau 7261 uuuagaacca aaccagcucg cuggugacca cagccua--- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- ---------- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- -------->g cACAC-AUUU A-GGAG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUUC (UACAAGACA AC-)GAAG-G U|G|U|CCA- AAGAU-AAGC |UCAGU-GAG 7621 -A(ACA---- GAAA)UCUCA CGUAGC|GC( A|A--AAGG) GUAAAAG-CU U-GUUUUAUU 7681 -UUGAUUU(u c--agugc-- )GAGUCGAAA ACGC(-GAAA )GCGUGG|CC --UAU|CGA- 7741 UCCUUUcac- ---------- ---------- ---------- --(----)-- ---------- 7801 ---------- ---------- --ga-uuc(- -gaga-u--u u---)----- ---------- 7861 -----gaa|g cgAGAG-GUG UC|AGA--AA AGU~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS G.serrulat 9262 bp RNA RNA 02-SEP-1998 DEFINITION Gelidium serrulatum.. ACCESSION No information KEYWORDS No information. SOURCE Gelidium serrulatum. ORGANISM Gelidium serrulatum. REFERENCE 1 (bases 1 to 363) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE large-subunit rRNA sequence data A multigene phylogeny of the Gelidiales including nuclear JOURNAL J. Appl. Phycol. (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF039538 LOCUS AF039538 2499 bp DNA PLN 02-SEP-1998 DEFINITION Gelidium serrulatum large subunit ribosomal RNA gene, partial sequence. ACCESSION AF039538 NID g3510585 KEYWORDS . SOURCE Gelidium serrulatum. ORGANISM Gelidium serrulatum Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Gelidium. REFERENCE 1 (bases 1 to 2499) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE A multigene phylogeny of the Gelidiales including nuclear large-subunit rRNA sequence data JOURNAL J. Appl. Phycol. (1998) In press REFERENCE 2 (bases 1 to 2499) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE Direct Submission JOURNAL Submitted (22-DEC-1997) CMSR, UNCW, 7205 Wrightsville Avenue, Wilmington, NC 28403, USA REFERENCE 3 (bases 1 to 2499) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE Direct Submission JOURNAL Submitted (01-SEP-1998) CMSR, UNCW, 7205 Wrightsville Avenue, Wilmington, NC 28403, USA REMARK Sequence update by submitter COMMENT On Sep 2, 1998 this sequence version replaced gi:2865440. FEATURES Location/Qualifiers source 1..2499 /organism="Gelidium serrulatum" /db_xref="taxon:31405" /note="Mochimo, Sucre, Venezuela" rRNA <1..>2499 /product="large subunit ribosomal RNA" BASE COUNT 654 a 511 c 733 g 598 t 3 others BASE COUNT 654 a 511 c 733 g 598 t 6766 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~(~~~~~~ ~)~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~gu-cagu 901 uugggaaa-- --g-uga-c( a--uggaaa- -u)guc-c-- ---------- --------GC 961 --|C(GUG)G |AGGG-(UGA UAGC)-CCCG UC|-cauccc gaucaggacg uuc---c--- 1021 ---guaaaca gaauauuu-c agau------ ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUA GUU(----UG 1141 GGAA)UGCUG CUCUAA---- -UUGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUCU-- ---------- ---------- ---------- )CAU-CAAAG GCU----AAA 1381 UA-------- ---------- acggU-GGGA GACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAU- GAAA-AGCAC UUU(ga-aa- )AGAG-GGUG --AAAAGAAC C-UGAAAC-C 1501 GUUAC-ggg< gg---aagcg gauugcau-u auucuaguuu uaacguguuc aaccuuuuag 1561 gugcauugac guua-aaacu uaucugcugu ggauuuuuga uaauugaaau ugaauuauua 1621 aagguugagg gcuccacuuu gugugaggac ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- -------agc ggau-ugacg augcgauacg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAGCGCGGGU GCGAGUCg-g aag-gu---( ----g-uaaa 2641 a-)------- ---------- ---a-ccug- ---------- --ugggcGAA GU(GAAA)GC 2701 GA[gauaaaa cucucaguuu gaggcggcau auuuucguug aaaauagguc cgacc----- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- -]-------- ---------U UGAGCAGUU- 3181 -GCG-CUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCGG- AG|U-AGGGC AAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-GUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU CGAACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUUCCUC CGAAGUUUCU --(CUCA)GG 3421 AUAGC--GGG -CCGaca|-- -|-uagug-- ---u------ ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 --uguUUUGU -G|CGG--UA AA-GCGAAUG AUUAGCGUA- -----UUUGG GGAC--(auu 3721 u-a)--GUCU U-CAG-|ACG AUUC-UCAAA CUUUC-AAUG |CGCAAG-gg -uguugcug- 3781 --cuuaauug agcuu-ca-c cggua----- ---------- ---------- ---------- 3841 ---------- ---------- ----aaaacg u|CG-GCCCU --GU-GGGCC -ACU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUACGG(GA- UGAA)CCG-- UAAGCAU--- GGUUAAG--G 3961 C|GCCA-AAC U-A--CU-CG CU-ua--u-- --------ag auccca---- cAAAAGGUGU 4021 U--GAUUCAU CGAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(CAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAAUU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- UAAGCGGGU| G|-------- --GCCGAC-- --ACCAUGC| (- -----)--uu cagau-gAGU AGGA------ 4441 --GGA|-CG- UG-GU-GA-- --------U- -C-G-UGA-- c------GAA Guau------ 4501 g-cgu(gcga -)acgngua- UCG|A-ACG| A--UCACUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAG- C(gagau--- ---------- ---------- ---------- 4621 --)CCUUGAA |GGGCGAAGU G-GGG|AAGG GUU|CCACGC UA-ACA(-UU GAU)UG|GGC 4681 GUGGGUGAGU |-CGU-UCCU AAGC------ ---------- 4921 ----GC-GAA AGGGA-AG-C GGG(UUUACA UU-)CCCGC| -AC----acg gaugugg-ag 4981 gc[ggugac- -----gcu-- ---------- ---------- --------(- -------)-- 5041 ---------- ---------- ---------- ---------- -----uu-a] uug-gggcga 5101 acac-----g cug--gcgau gg-c-gcug- -GG-CAGA(G UUGUCUUU-) UCUGUU-|UG 5161 A-ccguuug- --------c- --g|caugcg gugu-ggagu ---ccg(cuu gu-)cgggag 5221 aaacac-nca ug-------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- -----cgc-g gGC-----AG 5341 -AGCGCCGG( -ggcuuau)C CGGCGU-c-c agcucg---c -caucg--ac ggcC-CUUGA 5401 AAc-uuugcc -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ---------- -ugcugau-- ---------- ----uuuaga a-ucnacg-- cc-gugGCGU 5581 A|CC--GAUC ACC(GCAUCA )GG|UCC-CC AAGGU(GAAC A)GCCUCU-| GCUCA-||A- 5641 uauG--AAAA AU-GCAG-GU A-AGGGAAGU CGGCAA-AUU -AGACCCGUA AC(UUUG)GG 5701 AAAAGGGUU| GGCUCUAGU- ---------- -(-----)---- -------ACU AGAACU|G(- --CAA)CGGG 6601 CAAAGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--GG G|CCG(---- 6661 uggc)CGG-- ---------- --U-GAUGAC GCAAUGUG-- AUUUCUGCUC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaga) -----uucaa ----UCAAGC G|CGGGUAAA 6781 C|AGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCU ACUGU-CCCU AUCUGCU-UC 6901 UA|GCGAAAC C|ACA-GCCG AG(GGAA-CG GG)CUCGGCG -A-AAU-CGG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AUUCU A---AUU-UU |GUGAAGCAA GUUGGGAGGU 7021 GUAGCAUAGG UGGGAGCG-- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -CUUG)---- 7141 --------CG C-GUCCGUGA AA-UACCACU |ACUCCCAG- -UCUUG-CUU UACUUAc--- 7201 ------(--- --)------| --<---u--a gguaagcgug gaugagucuu acgacuucau 7261 uuuagaacca aaccagcucg cuggugacca cagccua--- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- ---------- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- -------->g cACAC-AUUU A-GGAG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUUC (UACAAGACA AC-)GAAG-G U|G|U|CCA- AAGAU-AAGC |UCAGU-GAG 7621 -A(ACA---- GAAA)UCUCA CGUAGC|GC( A|A--AAGG) GUAAAAG-CU U-GUUUUAUU 7681 -UUGAUUU(u c--agugc-- )GAGUCGAAA ACGC(-GAAA )GCGUGG|CC --UAU|CGA- 7741 UCCUUUcac- ---------- ---------- ---------- --(----)-- ---------- 7801 ---------- ---------- --ga-uuc(- -gaga-u--u u---)----- ---------- 7861 -----gaa|g cgAGAG-GUG UC|AGA--AA AGU~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS G.sesquipe 9262 bp RNA RNA 02-SEP-1998 DEFINITION Gelidium sesquipedale.. ACCESSION No information KEYWORDS No information. SOURCE Gelidium sesquipedale. ORGANISM Gelidium sesquipedale. REFERENCE 1 (bases 1 to 363) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE large-subunit rRNA sequence data A multigene phylogeny of the Gelidiales including nuclear JOURNAL J. Appl. Phycol. (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF039539 LOCUS AF039539 2500 bp DNA PLN 02-SEP-1998 DEFINITION Gelidium sesquipedale large subunit ribosomal RNA gene, partial sequence. ACCESSION AF039539 NID g3510586 KEYWORDS . SOURCE Gelidium sesquipedale. ORGANISM Gelidium sesquipedale Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Gelidium. REFERENCE 1 (bases 1 to 2500) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE A multigene phylogeny of the Gelidiales including nuclear large-subunit rRNA sequence data JOURNAL J. Appl. Phycol. (1998) In press REFERENCE 2 (bases 1 to 2500) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE Direct Submission JOURNAL Submitted (22-DEC-1997) CMSR, UNCW, 7205 Wrightsville Avenue, Wilmington, NC 28403, USA REFERENCE 3 (bases 1 to 2500) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE Direct Submission JOURNAL Submitted (01-SEP-1998) CMSR, UNCW, 7205 Wrightsville Avenue, Wilmington, NC 28403, USA REMARK Sequence update by submitter COMMENT On Sep 2, 1998 this sequence version replaced gi:2865441. FEATURES Location/Qualifiers source 1..2500 /organism="Gelidium sesquipedale" /db_xref="taxon:31406" /note="Aramar, Asturias, Spain" rRNA <1..>2500 /product="large subunit ribosomal RNA" BASE COUNT 654 a 513 c 735 g 597 t 1 others BASE COUNT 654 a 513 c 735 g 597 t 6763 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~(~~~~~~ ~)~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~gu-cagu 901 uugggaaa-- --g-uga-c( a--uggaaa- -u)guc-c-- ---------- --------GC 961 --|C(GUG)G |AGGG-(UGA UAGC)-CCCG UC|-cauccc gaucaggacg cuc---c--- 1021 ---guaaaca gaauauuu-c agau------ ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUA GUU(----UG 1141 GGAA)UGCUG CUCUAA---- -UUGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUCU-- ---------- ---------- ---------- )CAU-CAAAG GCU----AAA 1381 UA-------- ---------- acggU-GGGA GACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAU- GAAA-AGCAC UUU(ga-aa- )AGAG-GGUG --AAAAGAAC C-UGAAAC-C 1501 GUUAC-ggg< gg---aagcg gauugcau-u auucuaguuu uaacguguuc aaccuuuuag 1561 gugcauugac guua-aaacu uaucugcugu ggauuuuuga uaauugaaaa ugaauuauua 1621 aagauugagg gcuccacuuu gugugaggac ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- -------agc ggau-ugacg augcgauacg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAGCGCGGGU GCGAGUCg-g aag-gu---( ----g-uaaa 2641 a-)------- ---------- ---a-ccug- ---------- --ugggcGAA GU(GAAA)GC 2701 GA[gauaaaa cucucaguuu gaggcggcau auuuucguug aaaauagguc cgacc----- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- -]-------- ---------U UGAGCAGUU- 3181 -GCG-CUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCGG- AG|U-AGGGC AAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-GUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU CGAACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUUCCUC CGAAGUUUCU --(CUCA)GG 3421 AUAGC--GGG -CCGaca|-- -|-uagug-- ---u------ ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 --uguUUUGU -G|CGG--UA AA-GCGAAUG AUUAGCGUA- -----UUUGG GGAC--(auu 3721 u-a)--GUCU U-CAG-|ACG AUUC-UCAAA CUUUC-AAUG |CGCAAG-gg -uguugcug- 3781 --cuuaauug agcuu-ca-c cggua----- ---------- ---------- ---------- 3841 ---------- ---------- ----aaaacg u|CG-GCCCU --GU-GGGCC -ACUUUUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUACGG(GA- UGAA)CCG-- UAAGCAU--- GGUUAAG--G 3961 C|GCCA-AAC U-A--CU-CG CU-ua--u-- --------ag auccca---- cAAAAGGUGU 4021 U--GAUUCAU CGAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(CAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAAUU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- UAAGCGGGU| G|-------- --GCCGAC-- --ACCAUGC| (- -----)--uu cagau-gAGU AGGA------ 4441 --GGA|-CG- UG-GU-GA-- --------U- -C-G-UGA-- c------GAA Guau------ 4501 g-cgu(gcga -)acgngua- UCG|A-ACG| A--UCACUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAG- C(gagau--- ---------- ---------- ---------- 4621 --)CCUUGAA |GGGCGAAGU G-GGG|AAGG GUU|CCACGC UA-ACA(-UU GAU)UG|GGC 4681 GUGGGUGAGU |-CGU-UCCU AAGC------ ---------- 4921 ----GC-GAA AGGGA-AG-C GGG(UUUACA UU-)CCCGC| -AC----acg gaugugg-ag 4981 gc[ggugac- -----gcu-- ---------- ---------- --------(- -------)-- 5041 ---------- ---------- ---------- ---------- -----uu-a] uug-gggcga 5101 acac-----g cug--gcgau gg-c-gcug- -GG-CAGA(G UUGUCUUU-) UCUGUU-|UG 5161 A-ccguuug- --------c- --g|caugcg gugu-ggagu ---ccg(cuu gu-)cgggag 5221 aaacac-gca ug-------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- -----cgc-g gGC-----AG 5341 -AGCGCCGG( -ggcuuau)C CGGCGU-c-c agcucg---c -caucg--ac ggcC-CUUGA 5401 AAc-uuugcc -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ---------- -ugcugau-- ---------- ----uuuaga aucc-acg-- cc-gugGCGU 5581 A|CC--GAUC ACC(GCAUCA )GG|UCC-CC AAGGU(GAAC A)GCCUCU-| GCUCA-||A- 5641 uauG--AAAA AU-GCAG-GU A-AGGGAAGU CGGCAA-AUU -AGACCCGUA AC(UUUG)GG 5701 AAAAGGGUU| GGCUCUAGU- ---------- -(-----)---- -------ACU AGAACU|G(- --CAA)CGGG 6601 CAAAGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--GG G|CCG(---- 6661 uggc)CGG-- ---------- --U-GAUGAC GCAAUGUG-- AUUUCUGCUC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaga) -----uucaa ----UCAAGC G|CGGGUAAA 6781 C|AGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCU ACUGU-CCCU AUCUGCU-UC 6901 UA|GCGAAAC C|ACA-GCCG AG(GGAA-CG GG)CUCGGCG -A-AAU-CGG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AUUCU A---AUU-UU |GUGAAGCAA GUUGGGAGGU 7021 GUAGCAUAGG UGGGAGCG-- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -CUUG)---- 7141 --------CG C-GUCCGUGA AA-UACCACU |ACUCCCAG- -UCUUG-CUU UACUUAc--- 7201 ------(--- --)------| --<---u--a gguaagcgug gaugagucuu acgacuucau 7261 uuuagaacca aaccagcucg cuggugacca cagccua--- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- ---------- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- -------->g cACAC-AUUU A-GGAG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUUC (UACAAGACA AC-)GAAG-G U|G|U|CCA- AAGAU-AAGC |UCAGU-GAG 7621 -A(ACA---- GAAA)UCUCA CGUAGC|GC( A|A--AAGG) GUAAAAG-CU U-GUUUUAUU 7681 -UUGAUUU(u c--agugc-- )GAGUCGAAA ACGC(-GAAA )GCGUGG|CC --UAU|CGA- 7741 UCCUUUcac- ---------- ---------- ---------- --(----)-- ---------- 7801 ---------- ---------- --ga-uuc(- -gaga-u--u u---)----- ---------- 7861 -----gaa|g cgAGAG-GUG UC|AGA--AA AGU~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Gelidiu.sp 9262 bp RNA RNA 02-SEP-1998 DEFINITION Gelidium sp. 'isolate North Carolina'.. ACCESSION No information KEYWORDS No information. SOURCE Gelidium sp. 'isolate North Carolina'. ORGANISM Gelidium sp. 'isolate North Carolina'. REFERENCE 1 (bases 1 to 363) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE A multigene phylogeny of the Gelidiales including nuclear large-subunit rRNA sequence data JOURNAL J. Appl. Phycol. (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF039543 LOCUS AF039543 2499 bp DNA PLN 02-SEP-1998 DEFINITION Gelidium sp. 'isolate North Carolina' large subunit ribosomal RNA gene, partial sequence. ACCESSION AF039543 NID g3510590 KEYWORDS . SOURCE Gelidium sp. 'isolate North Carolina'. ORGANISM Gelidium sp. 'isolate North Carolina' Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Gelidium. REFERENCE 1 (bases 1 to 2499) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE A multigene phylogeny of the Gelidiales including nuclear large-subunit rRNA sequence data JOURNAL J. Appl. Phycol. (1998) In press REFERENCE 2 (bases 1 to 2499) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE Direct Submission JOURNAL Submitted (22-DEC-1997) CMSR, UNCW, 7205 Wrightsville Avenue, Wilmington, NC 28403, USA REFERENCE 3 (bases 1 to 2499) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE Direct Submission JOURNAL Submitted (01-SEP-1998) CMSR, UNCW, 7205 Wrightsville Avenue, Wilmington, NC 28403, USA REMARK Sequence update by submitter COMMENT On Sep 2, 1998 this sequence version replaced gi:2865445. FEATURES Location/Qualifiers source 1..2499 /organism="Gelidium sp. 'isolate North Carolina'" /db_xref="taxon:72596" /note="Masonboro Inlet, NC, USA" rRNA <1..>2499 /product="large subunit ribosomal RNA" BASE COUNT 649 a 514 c 738 g 597 t 1 others BASE COUNT 649 a 514 c 738 g 597 t 6764 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~(~~~~~~ ~)~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~gu-cagu 901 uugggaaa-- --g-uga-c( a--uggaaa- -u)guc-c-- ---------- --------GC 961 --|C(GUG)G |AGGG-(UGA UAGC)-CCCG UC|-cauccc gaucaggacg cuc---c--- 1021 ---guaaaca gaauauuu-c agau------ ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUA GUU(----UG 1141 GGAA)UGCUG CUCUAA---- -UUGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUCU-- ---------- ---------- ---------- )CAU-CAAAG GCU----AAA 1381 UA-------- ---------- acggU-GGGA GACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAU- GAAA-AGCAC UUU(ga-aa- )AGAG-GGUG --AAAAGAAC C-UGAAAC-C 1501 GUUAC-ggg< gg---aagcg gauugcau-u auucuaguuu uaacguguuc aaccuuuuag 1561 gugcauugac guua-aaacu uaucugcugu ggauuuuuga uaaucgaaau uggauuauua 1621 aagauugagg gcuccacuuu gugugaggac ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- -------agc ggau-ugacg augcgauacg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAGCGCGGGU GCGAGUCg-g aag-gu---( ----g-uaaa 2641 a-)------- ---------- ---a-ccug- ---------- --ugggcGAA GU(GAAA)GC 2701 GA[gauaaaa cucucaguuu gaggcggcau auuuucguug aaaauagguc cgacc----- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- -]-------- ---------U UGAGCAGUU- 3181 -GCG-CUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCGG- AG|U-AGGGC AAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-GUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU CGAACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUUCCUC CGAAGUUUCU --(CUCA)GG 3421 AUAGC--GGG -CCGaca|-- -|-uagug-- ---u------ ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 --uguUUUGU -G|CGG--UA AA-GCGAAUG AUUAGCGUA- -----UUUGG GGAC--(auu 3721 u-a)--GUCU U-CAG-|ACG AUUC-UCAAA CUUUC-AAUG |CGCAAG-gg -uguugcug- 3781 --cuuaauug agcuu-ca-c cggua----- ---------- ---------- ---------- 3841 ---------- ---------- ----aaaacg u|CG-GCCCU --GU-GGGCC -ACU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUACGG(GA- UGAA)CCG-- UAAGCAU--- GGUUAAG--G 3961 U|GCCA-AAC U-A--CU-CG CU-ua--u-- --------ag auccca---- cAAAAGGUGU 4021 U--GAUUCAU CGAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(CAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAAUU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- UAAGCGGGU| G|-------- --ACCGAC-- --ACCAUGC| (- -----)--uu cagau-gAGU AGGA------ 4441 --GGA|-CG- UG-GU-GA-- --------U- -C-G-UGA-- c------GAA Guau------ 4501 g-cgu(gcga -)acgngua- UCG|A-ACG| A--UCACUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAG- C(gagau--- ---------- ---------- ---------- 4621 --)CCUUGAA |GGGCGAAGU G-GGG|AAGG GUU|CCACGC UA-ACA(-UU GAU)UG|GGC 4681 GUGGGUGAGU |-CGU-UCCU AAGC------ ---------- 4921 ----GC-GAA AGGGA-AG-C GGG(UUUACA UU-)CCCGC| -AC----acg gaugugg-ag 4981 gc[ggugac- -----gcu-- ---------- ---------- --------(- -------)-- 5041 ---------- ---------- ---------- ---------- -----uu-a] uug-gggcga 5101 acac-----g cug--gcgau gg-c-gcug- -GG-CAGA(G UUGUCUUU-) UCUUUU-|UG 5161 A-ccguuug- --------c- --g|caugcg gugu-ggagu ---ccg(cuu gu-)cgggag 5221 aaacac-gca ug-------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- -----cgc-g gGC-----AG 5341 -AGCGCCGG( -ggcuuuu)C CGGCGU-c-c agcucg---c -caucg--ac ggcC-CUUGA 5401 AAc-uuugcc -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ---------- -ugcuggu-- ---------- ----uuuaga aucc-acg-- cc-gugGCGU 5581 A|CC--GAUC ACC(GCAUCA )GG|UCC-CC AAGGU(GAAC A)GCCUCU-| GCUCA-||A- 5641 uauG--AAAA AU-GCAG-GU A-AGGGAAGU CGGCAA-AUU -AGACCCGUA AC(UUUG)GG 5701 AAAAGGGUU| GGCUCUAGU- ---------- -(-----)---- -------ACU AGAACU|G(- --CAA)CGGG 6601 CAAAGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--GG G|CCG(---- 6661 uggc)CGG-- ---------- --U-GAUGAC GCAAUGUG-- AUUUCUGCUC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaga) -----uucaa ----UCAAGC G|CGGGUAAA 6781 C|AGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCU ACUGU-CCCU AUCUGCU-UC 6901 UA|GCGAAAC C|ACA-GCCG AG(GGAA-CG GG)CUCGGCG -A-AAU-CGG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AUUCU A---AUU-UU |GUGAAGCAA GUUGGGAGGU 7021 GUAGCAUAGG UGGGAGCG-- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -CUUG)---- 7141 --------CG C-GUCCGUGA AA-UACCACU |ACUCCCAG- -UCUUG-CUU UACUUAc--- 7201 ------(--- --)------| --<---u--a gguaagcgug gaugagucuu acgacuucau 7261 uuuagaacca aaccagcucg cuggugacca cagccua--- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- ---------- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- -------->g cACAC-AUUU A-GGAG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUUC (UACAAGACA AC-)GAAG-G U|G|U|CCA- AAGAU-AAGC |UCAGU-GAG 7621 -A(ACA---- GAAA)UCUCA CGUAGC|GC( A|A--AAGG) GUAAAAG-CU U-GUUUUAUU 7681 -UUGAUUU(u c--agugc-- )GAGUCGAAA ACGC(-GAAA )GCGUGG|CC --UAU|CGA- 7741 UCCUUUcac- ---------- ---------- ---------- --(----)-- ---------- 7801 ---------- ---------- --ga-uuc(- -gaga-u--u u---)----- ---------- 7861 -----gaa|g cgAGAG-GUG UC|AGA--AA AGU~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS O.pristoid 9262 bp RNA RNA 02-SEP-1998 DEFINITION Onikusa pristoides.. ACCESSION No information KEYWORDS No information. SOURCE Onikusa pristoides. ORGANISM Onikusa pristoides. REFERENCE 1 (bases 1 to 363) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE A multigene phylogeny of the Gelidiales including nuclear large-subunit rRNA sequence data JOURNAL J. Appl. Phycol. (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF039541 LOCUS AF039541 2497 bp DNA PLN 02-SEP-1998 DEFINITION Onikusa pristoides large subunit ribosomal RNA gene, partial sequence. ACCESSION AF039541 NID g3510588 KEYWORDS . SOURCE Onikusa pristoides. ORGANISM Onikusa pristoides Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Onikusa. REFERENCE 1 (bases 1 to 2497) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE A multigene phylogeny of the Gelidiales including nuclear large-subunit rRNA sequence data JOURNAL J. Appl. Phycol. (1998) In press REFERENCE 2 (bases 1 to 2497) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE Direct Submission JOURNAL Submitted (22-DEC-1997) CMSR, UNCW, 7205 Wrightsville Avenue, Wilmington, NC 28403, USA REFERENCE 3 (bases 1 to 2497) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE Direct Submission JOURNAL Submitted (01-SEP-1998) CMSR, UNCW, 7205 Wrightsville Avenue, Wilmington, NC 28403, USA REMARK Sequence update by submitter COMMENT On Sep 2, 1998 this sequence version replaced gi:2865443. FEATURES Location/Qualifiers source 1..2497 /organism="Onikusa pristoides" /db_xref="taxon:28858" /note="False Bay, Cape Peninsula, South Africa" rRNA <1..>2497 /product="large subunit ribosomal RNA" BASE COUNT 657 a 512 c 733 g 594 t 1 others BASE COUNT 657 a 512 c 733 g 594 t 6766 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~(~~~~~~ ~)~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-cagu 901 uugggaaa-- --g-uga-c( a--uggaaa- -u)guc-c-- ---------- --------GC 961 --|C(GUG)G |AGGG-(UGA UAGC)-CCCG UC|-cauccu gaucaggacg cuc---c--- 1021 ---guaaaca gaauauuu-c agau------ ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUA GUU(----UG 1141 GGAA)UGCUG CUCUAA---- -UUGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUCU-- ---------- ---------- ---------- )CAU-CAAAG GCU----AAA 1381 UA-------- ---------- acggU-GGGA GACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAU- GAAA-AGCAC UUU(ga-aa- )AGAG-GGUG --AAAAGAAC C-UGAAAC-C 1501 GUUAC-ggg< gg---aagcg gauugcau-u auucaaguuu uaacguguuc aaccuuuuag 1561 gugcauugac guua-aaacu uaucugcugu ggauuuuuga uaauugaaaa ugaauuauua 1621 aagauugagg gcuccacuuu gugugaggac ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- -------agc ggau-ugacg augcgauacg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAGCGCGGGU GCGAGUCg-g aag-gu---( ----g-uaaa 2641 a-)------- ---------- ---a-ccug- ---------- --ugggcGAA GU(GAAA)GC 2701 GA[gauaaaa cucucaguuu gaggcggcau auuuucguug aaaauagguc cgacc----- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- -]-------- ---------U UGAGCAGUU- 3181 -GCG-CUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCGG- AG|U-AGGGC AAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-GUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU CGAACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUUCCUC CGAAGUUUCU --(CUCA)GG 3421 AUAGC--GGG -CCGaca|-- -|-uagug-- ---u------ ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 --uguUUUGU -G|CGG--UA AA-GCGAAUG AUUAGCGUA- -----UUUGG GGAC--(auu 3721 u-a)--GUCU U-CAG-|ACG AUUC-UCAAA CUUUC-AAUG |CGCAAG-gg -uguugcug- 3781 --cuuaauug agcuu-ca-c cggua----- ---------- ---------- ---------- 3841 ---------- ---------- ----aaaacg u|CG-GCCCU --GU-GGGCC -ACU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUACGG(GA- UGAA)CCG-- UAAGCAU--- GGUUAAG--G 3961 C|GCCA-AAC U-A--CU-CG CU-ua--u-- --------ag auccca---- cAAAAGGUGU 4021 U--GAUUCAU CGAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(CAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAAUU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- UAAGCGGGU| G|-------- --GCCGAC-- --ACCAUGC| (- -----)--uu cagau-gAGU AGGA------ 4441 --GGA|-CG- UG-GU-GA-- --------U- -C-G-UGA-- c------GAA Guau------ 4501 g-cgu(gcga -)acgngua- UCG|A-ACG| A--UCACUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAG- C(gagau--- ---------- ---------- ---------- 4621 --)CCUUGAA |GGGCGAAGU G-GGG|AAGG GUU|CCACGC UA-ACA(-UU GAU)UG|GGC 4681 GUGGGUGAGU |-CGU-UCCU AAGC------ ---------- 4921 ----GC-GAA AGGGA-AG-C GGG(UUUACA UU-)CCCGC| -AC----acg gaugugg-ag 4981 gc[ggugac- -----gcu-- ---------- ---------- --------(- -------)-- 5041 ---------- ---------- ---------- ---------- -----uu-a] uug-gggcga 5101 acac-----g cug--gcgau gg-c-gcug- -GG-CAGA(G UUGUCUUU-) UCUGUU-|UG 5161 A-ccguuug- --------c- --g|caugcg gugu-ggagu ---ccg(cuu gu-)cgggag 5221 aaacac-gca ug-------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- -----cgc-g gGC-----AG 5341 -AGCGCCGG( -ggcuuau)C CGGCGU-c-c agcucg---c -caucg--ac ggcC-CUUGA 5401 AAc-uuugcc -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ---------- -ugcugau-- ---------- ----uuuaga aucc-acg-- cc-gugGCGU 5581 A|CC--GAUC ACC(GCAUCA )GG|UCC-CC AAGGU(GAAC A)GCCUCU-| GCUCA-||A- 5641 uauG--AAAA AU-GCAG-GU A-AGGGAAGU CGGCAA-AUU -AGACCCGUA AC(UUUG)GG 5701 AAAAGGGUU| GGCUCUAGU- ---------- -(-----)---- -------ACU AGAACU|G(- --CAA)CGGG 6601 CAAAGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--GG G|CCG(---- 6661 uggc)CGG-- ---------- --U-GAUGAC GCAAUGUG-- AUUUCUGCUC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaga) -----uucaa ----UCAAGC G|CGGGUAAA 6781 C|AGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCU ACUGU-CCCU AUCUGCU-UC 6901 UA|GCGAAAC C|ACA-GCCG AG(GGAA-CG GG)CUCGGCG -A-AAU-CGG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AUUCU A---AUU-UU |GUGAAGCAA GUUGGGAGGU 7021 GUAGCAUAGG UGGGAGCG-- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -CUUG)---- 7141 --------CG C-GUCCGUGA AA-UACCACU |ACUCCCAG- -UCUUG-CUU UACUUAc--- 7201 ------(--- --)------| --<---u--a gguaagcgug gaugagucuu acgacuucau 7261 uuuagaacca aaccagcucg cuggugacca cagccua--- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- ---------- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- -------->g cACAC-AUUU A-GGAG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUUC (UACAAGACA AC-)GAAG-G U|G|U|CCA- AAGAU-AAGC |UCAGU-GAG 7621 -A(ACA---- GAAA)UCUCA CGUAGC|GC( A|A--AAGG) GUAAAAG-CU U-GUUUUAUU 7681 -UUGAUUU(u c--agugc-- )GAGUCGAAA ACGC(-GAAA )GCGUGG|CC --UAU|CGA- 7741 UCCUUUcac- ---------- ---------- ---------- --(----)-- ---------- 7801 ---------- ---------- --ga-uuc(- -gaga-u--u u---)----- ---------- 7861 -----gaa|g cgAGAG-GUG UC|AGA--AA AGU~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS P.lucida 9262 bp RNA RNA 02-SEP-1998 DEFINITION Pterocladia lucida.. ACCESSION No information KEYWORDS No information. SOURCE Pterocladia lucida. ORGANISM Pterocladia lucida. REFERENCE 1 (bases 1 to 363) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE large-subunit rRNA sequence data A multigene phylogeny of the Gelidiales including nuclear JOURNAL J. Appl. Phycol. (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF039550 LOCUS AF039550 2508 bp DNA PLN 02-SEP-1998 DEFINITION Pterocladia lucida large subunit ribosomal RNA gene, partial sequence. ACCESSION AF039550 NID g3510597 KEYWORDS . SOURCE Pterocladia lucida. ORGANISM Pterocladia lucida Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Pterocladia. REFERENCE 1 (bases 1 to 2508) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE A multigene phylogeny of the Gelidiales including nuclear large-subunit rRNA sequence data JOURNAL J. Appl. Phycol. (1998) In press REFERENCE 2 (bases 1 to 2508) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE Direct Submission JOURNAL Submitted (22-DEC-1997) CMSR, UNCW, 7205 Wrightsville Avenue, Wilmington, NC 28403, USA REFERENCE 3 (bases 1 to 2508) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE Direct Submission JOURNAL Submitted (01-SEP-1998) CMSR, UNCW, 7205 Wrightsville Avenue, Wilmington, NC 28403, USA REMARK Sequence update by submitter COMMENT On Sep 2, 1998 this sequence version replaced gi:2865452. FEATURES Location/Qualifiers source 1..2508 /organism="Pterocladia lucida" /db_xref="taxon:31408" /note="Owhiro Bay, South Wellington, New Zealand" rRNA <1..>2508 /product="large subunit ribosomal RNA" BASE COUNT 664 a 503 c 723 g 611 t 7 others BASE COUNT 664 a 503 c 723 g 611 t 6761 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~(~~~~~~ ~)~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~gu-cagu 901 ucgggaaa-- --g-uga-u( a--uggaaa- -u)guc-c-- ---------- --------GC 961 --|C(GUG)G |AGGG-(UGA UAGC)-CCCG UC|-cauccc guucaggaca cuc---c--- 1021 ---guaaaca gaauauuu-c aaau------ ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUA GUU(----UG 1141 GGAA)UGCUG CUCUAA---- -UUGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUCU-- ---------- ---------- ---------- )CAU-CAAAG GCU----AAA 1381 UA-------- ---------- auggU-AAAA GACCGAUAGU AAAA-AAGUA CC(GUGA)G- 1441 G-GAAAGAU- GAAA-AGCAC UUU(ga-aa- )AGAG-GGUG --AAAAGAAC C-UGAAAC-C 1501 GUUAC-ggg< gg---aagcg gauugcau-u agauugguac uauguguguu caaccuuuua 1561 ggugcauuga cacuagaacc uaucugcugu ggauuuuuga ugaucgauuu uggauuauua 1621 aagauugagg gcuccacuuu -ugug----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- --------ug aggacagc-- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- aga-auaaug augcgauacg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAGCGCGGGU GCGAGUCg-g aag-gu---( ----g-uaaa 2641 a-)------- ---------- ---a-ccug- ---------- --ugggcGAA GU(GAAA)GC 2701 GA[gauuaaa acucucaguu ugaggcggca uaucaucguu gaugguaagu ccgacc---- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- -]-------- ---------U UGAGCAGUU- 3181 -GCG-CUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCGG- AG|U-AGGGC AAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-GUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU CGAACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUUCCUC CGAAGUUUCU --(CUCA)GG 3421 AUAGC--GGG -CCGaca|-- -|-uauag-- ---u------ ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 --uguUUUGU -G|CGG--UA AA-GCGAAUG AUUAGCGUA- -----UUUGG GGGC--(aau 3721 u-a)--GCCU U-CAG-|ACG AUUC-UCAAA CUUUC-AAUG |CGCAAG-gg -uguugcug- 3781 --cuuaauug agcuu-ca-c cggua----- ---------- ---------- ---------- 3841 ---------- ---------- ----aaaacg u|CG-GCCCU --GU-GGGCC -ACU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUACGG(GA- UGAA)CCG-- UAAGCAC--- GGUUAAG--G 3961 C|GCCA-GAC U-A--CU-CG CU-ua--u-- --------ag auccca---- cAAAAGGUGU 4021 U--GAUUCAU CGAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(CAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGARUU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- UAAGCGGGU| G|-------- --GCCGAC-- --ACCGUGC| (- -----)--uu cagau-gAGU AGGA------ 4441 --GGA|-CG- UG-GU-GA-- --------U- -U-G-UGA-- c------GAA Guau------ 4501 g-ugu(gcaa -)acacgua- UCG|A-ACA| A--UCACUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAG- C(gagau--- ---------- ---------- ---------- 4621 --)CCUUGAA |GGGCGAACN G-GGG|AAGG GUU|CCACGC UA-ACA(-UU GAU)UG|GGC 4681 GUGGGUGAGU |-CGU-UCCU AAGC------ ---------- 4921 ----GC-GAA AGGGA-AG-C AGG(UUUACA UU-)CCUGC| -AC----acg gaugugg-ag 4981 gc[ggugac- -----gcu-- ---------- ---------- --------(- -------)-- 5041 ---------- ---------- ---------- ---------- -----uu-a] uug-agacga 5101 acac-----g cug--gcgau gg-c-gcug- -GG-CAGA(G UUGUCUUU-) UCUGUU-|UG 5161 A-ccguuug- --------c- --g|uauaug gugu-ggagu ---ccg(cuu gu-)cgggag 5221 aaacac-aua ua-------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- -----cac-g gGC-----AG 5341 -AGCGCCGG( -ggcuuuu)C CGGCGU-c-c agcucg---c -caucg--ac ggcC-CUUGA 5401 AAc-uuuguc -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ---------- -ugcugannn ---------- ----uuuaaa a-ucnacg-- cc-gugGCGU 5581 A|CC--GANC ACC(GCAUCA )GG|UCC-CC GAGGU(GAAC A)GCCUCU-| GCUCA-||A- 5641 uauG--AAAA AU-GCAG-GU A-AGGGAAGU CGGCAA-AUU -AGACCCGUA AC(UUUG)GG 5701 AAAAGGGUU| GGCUCUAGU- ---------- -(-----)---- -------ACU AGAACU|G(- --CAA)CGGG 6601 CAAAGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--GG G|CCG(---- 6661 uggc)CGG-- ---------- --U-GAUGAC GCAAUGUG-- AUUUCUGCUC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaga) -----uucaa ----UCAAGC G|CGGGUAAA 6781 C|AGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCU ACUGU-CCCU AUCUGCU-UC 6901 UA|GCGAAAC C|ACA-GCCG AG(GGAA-CG GG)CUCGGCG -A-AAU-CGG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AUUCU A---AUU-UU |GUGAAGCAA GUUGGGAGGU 7021 GUAGCAUAGG UGGGAGCG-- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -CUUG)---- 7141 --------CG C-GUCCGUGA AA-UACCACU |ACUCCCAG- -UCUUG-CUU UACUUAc--- 7201 ------(--- --)------| --<---u--a gguacgugug gaugagucuu acgacuucau 7261 uuuagaauca aaccagcuug cuggugacca cagccua--- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- ---------- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- -------->g cACAC-AUUU A-GGAG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUUC (UACAAGACA AC-)GAAG-G U|G|U|CCA- AAGAU-AAGC |UCAGU-GAG 7621 -A(ACA---- GAAA)UCUCA CGUAGC|GC( A|A--AAGG) GUAAAAG-CU U-GUUUUAUU 7681 -UUGAUUU(u c--agugc-- )GAGUCGAAA ACGC(-GAAA )GCGUGG|CC --UAU|CGA- 7741 UCCUUUcac- ---------- ---------- ---------- --(----)-- ---------- 7801 ---------- ---------- --ga-uuc(- -gaga-u--u u---)----- ---------- 7861 -----gaa|g cgAGAG-GUG UC|AGA--AA AGU~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS P.melanoid 9262 bp RNA RNA 02-SEP-1998 DEFINITION Pterocladiella melanoidea.. ACCESSION No information KEYWORDS No information. SOURCE Pterocladiella melanoidea. ORGANISM Pterocladiella melanoidea. REFERENCE 1 (bases 1 to 363) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE large-subunit rRNA sequence data A multigene phylogeny of the Gelidiales including nuclear JOURNAL J. Appl. Phycol. (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF039548 LOCUS AF039548 2509 bp DNA PLN 02-SEP-1998 DEFINITION Pterocladiella melanoidea large subunit ribosomal RNA gene, partial sequence. ACCESSION AF039548 NID g3510595 KEYWORDS . SOURCE Pterocladiella melanoidea. ORGANISM Pterocladiella melanoidea Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Pterocladia. REFERENCE 1 (bases 1 to 2509) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE A multigene phylogeny of the Gelidiales including nuclear large-subunit rRNA sequence data JOURNAL J. Appl. Phycol. (1998) In press REFERENCE 2 (bases 1 to 2509) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE Direct Submission JOURNAL Submitted (22-DEC-1997) CMSR, UNCW, 7205 Wrightsville Avenue, Wilmington, NC 28403, USA REFERENCE 3 (bases 1 to 2509) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE Direct Submission JOURNAL Submitted (01-SEP-1998) CMSR, UNCW, 7205 Wrightsville Avenue, Wilmington, NC 28403, USA REMARK Sequence update by submitter COMMENT On Sep 2, 1998 this sequence version replaced gi:2865450. FEATURES Location/Qualifiers source 1..2509 /organism="Pterocladiella melanoidea" /db_xref="taxon:28860" /note="Mallorca, Spain" rRNA <1..>2509 /product="large subunit ribosomal RNA" BASE COUNT 677 a 490 c 720 g 620 t 2 others BASE COUNT 677 a 490 c 720 g 620 t 6755 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~(~~~~~~ ~)~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~uaug-cagu 901 uugagaaa-- --g-uga-c( a--uggaaa- -u)guc-c-- ---------- --------GC 961 --|C(GUG)G |AAGG-(UGA UAGC)-CCCG UC|-caucuc auucaggaca cuu---c--- 1021 ---guaaaca gaauauuu-c aaau------ ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUA GUU(----UG 1141 GGAA)UGCUG CUCUAA---- -UUGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUCU-- ---------- ---------- ---------- )CAU-CAAAG GCU----AAA 1381 UA-------- ---------- auggU-GGGA GACCGAUAGC AAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAU- GAAA-AGCAC UUU(ga-aa- )AGAG-GGUG --AAAAGAAC C-UGAAAC-C 1501 GUUAC-ggg< gg---aagcg gauugcau-u agauugguac uauguguguu cagccuuuua 1561 gguguauuga cacuagaacc ugucugcugu gaauuuuuaa ugauugauaa ugaauuguua 1621 aagauugagg gcuccacuuu gugugaggac ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- -------agc aga-augaug augcgauacg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAGCGCGGGU GCGAGUCg-g aag-gu---( ----g-uaaa 2641 a-)------- ---------- ---a-ccug- ---------- --ugggcGAA GU(GAAA)GC 2701 GA[gaauuaa aaacucucag uuugaggcgg cauaucaucg uugaugauag guccgacc-- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- -]-------- ---------U UGAGCAGUU- 3181 -GCG-CUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCGG- AG|U-AGGGC AAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-GUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU CGAACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUUCCUC CGAAGUUUCU --(CUCA)GG 3421 AUAGC--GGG -CCGaca|-- -|-uagug-- ---u------ ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 --uguUUUGU -G|CGG--UA AA-GCGAAUG AUUAGCGUA- -----AUUGG GGGC--(gau 3721 u-a)--GCCU U-CGG-|ACG AUUC-UCAAA CUUUC-AAUG |CGCAAG-gg -uguugcug- 3781 --cuuaauug agcuu-ca-c cggua----- ---------- ---------- ---------- 3841 ---------- ---------- ----aaaacg u|CG-GCCCU --GU-GGGCC -ACU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUACGG(GA- UGAA)CCG-- UAAGCAU--- GGUUAAG--G 3961 U|GCCA-AAC U-A--UU-CG CU-ua--u-- --------ag auccca---- cAAAAGGUGU 4021 U--GAUUCAU CCAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(CAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAAUU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- UAAGCGGAU| G|-------- --ACCGAC-- --ACCAUGC| (- -----)--uu cagau-gAGU AGGA------ 4441 --GGA|-CG- UG-GU-GA-- --------U- -C-G-UGA-- c------GAA Guau------ 4501 g-ugu(gcga -)acmngua- UUG|A-ACG| A--UCACUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAG- C(gagau--- ---------- ---------- ---------- 4621 --)CCUUGAA |GGGCGAAGC G-GGG|AAGG GUU|CCACGC UA-ACA(-UU GAU)UG|GGC 4681 GUGGGUGAGU |-CGU-UCCU AAGC------ ---------- 4921 ----GC-GAA AGGGA-AG-C AGG(UUUACA UU-)CCUGC| -AC----acg gaugugg-ag 4981 gc[ggugac- -----gcu-- ---------- ---------- --------(- -------)-- 5041 ---------- ---------- ---------- ---------- -----uu-a] uug-aggcga 5101 acac-----a uug--gcgau gg-c-gcug- -GG-CAGA(G UUGUCUUU-) UCUGUU-|UG 5161 A-ccguuug- --------u- --a|uauaug gugu-ggagu ---ccg(auu au-)cgggag 5221 aaacac-aua ua-------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- -----uac-g gGC-----AG 5341 -AGCGCCGG( -ggcuuau)C CGGCGU-c-c agcucg---c -caucg--ac gauC-CUUGA 5401 AAc-uuugcc -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ---------- -ugcugaau- ---------- ----uuuaau aucc-acg-- cc-gugGCGU 5581 A|CC--GAUC ACC(GCAUCA )GG|UCC-CC GAGGU(GAAC A)GCCUCU-| GCUCA-||A- 5641 uauG--AAAA AU-GCAG-GU A-AGGGAAGU CGGCAA-AUU -AGACCCGUA AC(UUUG)GG 5701 AAAAGGGUU| GGCUCUAGU- ---------- -(-----)---- -------ACU AGAACU|G(- --CAA)CGGG 6601 CAAAGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--GG G|CCG(---- 6661 uggc)CGG-- ---------- --U-GAUGAC GCAAUGUG-- AUUUCUGCUC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaga) -----uucaa ----UCAAGC G|CGGGUAAA 6781 C|AGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCU ACUGU-CCCU AUCUGCU-UC 6901 UA|GCGAAAC C|ACA-GCCG AG(GGAA-CG GG)CUCGGCG -A-AAU-CGG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AUUCU A---AUU-UU |GUGAAGCAA GUUGGGAGGU 7021 GUAGCAUAGG UGGGAGCG-- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -CUUG)---- 7141 --------CG C-GUCCGUGA AA-UACCACU |ACUCCCAG- -UCUUG-CUU UACUUAc--- 7201 ------(--- --)------| --<---u--a gguuagugug gaugagucuu acgacuucau 7261 uuuagaacca aaccaguuua cugguaacca cagccua--- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- ---------- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- -------->g cACAC-AUUU A-GGAG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUUC (UACAAGACA AC-)GAAG-G U|G|U|CCA- AAGAU-AAGC |UCAGU-GAG 7621 -A(ACA---- GAAA)UCUCA CGUAGC|GC( A|A--AAGG) GUAAAAG-CU U-GUUUUAUU 7681 -UUGAUUU(u c--agugc-- )GAGUCGAAA ACGC(-GAAA )GCGUGG|CC --UAU|CGA- 7741 UCCUUUcac- ---------- ---------- ---------- --(----)-- ---------- 7801 ---------- ---------- --ga-uuc(- -gaga-u--u u---)----- ---------- 7861 -----gaa|g cgAGAG-GUG UC|AGA--AA AGU~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS P.capillac 9262 bp RNA RNA 02-SEP-1998 DEFINITION Pterocladiella capillacea.. ACCESSION No information KEYWORDS No information. SOURCE Pterocladiella capillacea. ORGANISM Pterocladiella capillacea. REFERENCE 1 (bases 1 to 363) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE large-subunit rRNA sequence data A multigene phylogeny of the Gelidiales including nuclear JOURNAL J. Appl. Phycol. (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF039549 LOCUS AF039549 2511 bp DNA PLN 02-SEP-1998 DEFINITION Pterocladiella capillacea large subunit ribosomal RNA gene, partial sequence. ACCESSION AF039549 NID g3510596 KEYWORDS . SOURCE Pterocladiella capillacea. ORGANISM Pterocladiella capillacea Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Pterocladiella. REFERENCE 1 (bases 1 to 2511) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE A multigene phylogeny of the Gelidiales including nuclear large-subunit rRNA sequence data JOURNAL J. Appl. Phycol. (1998) In press REFERENCE 2 (bases 1 to 2511) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE Direct Submission JOURNAL Submitted (22-DEC-1997) CMSR, UNCW, 7205 Wrightsville Avenue, Wilmington, NC 28403, USA REFERENCE 3 (bases 1 to 2511) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE Direct Submission JOURNAL Submitted (01-SEP-1998) CMSR, UNCW, 7205 Wrightsville Avenue, Wilmington, NC 28403, USA REMARK Sequence update by submitter COMMENT On Sep 2, 1998 this sequence version replaced gi:2865451. FEATURES Location/Qualifiers source 1..2511 /organism="Pterocladiella capillacea" /db_xref="taxon:70838" /note="La Jolla, CA, USA" rRNA <1..>2511 /product="large subunit ribosomal RNA" BASE COUNT 687 a 486 c 707 g 629 t 2 others BASE COUNT 687 a 486 c 707 g 629 t 6753 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~(~~~~~~ ~)~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~cagu 901 uugagaaa-- --g-uga-c( a--uggaaa- -u)guc-c-- ---------- --------GC 961 --|C(GUG)G |AGGG-(UGA UAGC)-CCCG UC|-caucuu auucaggaca cuc---u--- 1021 ---guaaaca gaauauuu-c aaau------ ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUA GUU(----UG 1141 GGAA)UGCUG CUCUAA---- -UUGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUCU-- ---------- ---------- ---------- )CAU-CAAAG GCU----AAA 1381 UA-------- ---------- auggU-AGGA GACCGAUAGC AAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAU- GAAA-AGCAC UUU(ga-aa- )AGAG-GGUG --AAAAGAAC C-UGAAAC-C 1501 GUUAC-ggg< gg---aagcg gauuacauua gauugguacu auguguguuc agccuuuuag 1561 guguauugac acuag-aacc uaucugcugu gaauuuuuaa uaauugaaaa ugaauuguua 1621 aagauugagg gcuccacuuu uugug----- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ------ugag gacagcagaa 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- agau-----g augugauacg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAGCGCGGGU GCGAGUCa-a aag-gu---( ----g-uuaa 2641 a-)------- ---------- ---a-ccug- ---------- --ugggcGAA GU(GAAA)GC 2701 GA[gaauuaa aaacucucag uuugaggcgg cauaucaucg uugaugauag guccgacc-- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- -]-------- ---------U UGAGCAGUU- 3181 -GCG-CUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCGG- AG|U-AGGGC AAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-GUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU CGAACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUUCCUC CGAAGUUUCU --(CUCA)GG 3421 AUAGC--GGG -CCGaca|-- -|-uauau-- ---agu---- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 --uguUUUGU -G|CGG--UA AA-GCGAAUG AUUAGCGUA- -----UUUGG GGGC--(gau 3721 u-u)--GCCU U-CAG-|ACG AUUC-UCAAA CUUUC-AAUG |CGCAAG-gg -uguugcug- 3781 --cuuaauug agcuu-ca-c cggua----- ---------- ---------- ---------- 3841 ---------- ---------- ----aaaacg u|CG-GCCCU --GU-GGGCC -ACU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUACGG(GA- UGAA)CCG-- UAAGCAU--- GGUUAAG--G 3961 U|GCCA-AAC U-A--UU-CG CU-ua--u-- --------ag auccca---- cAAAAGGUGU 4021 U--GAUUCAU CGAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(CAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAAUU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- UAAGCGGAU| G|-------- --ACCGAC-- --ACCAUGC| (- -----)--uu cagau-gAGU AGGA------ 4441 --GGA|-CG- UG-GU-GA-- --------U- -C-G-UGA-- c------GAA Guau------ 4501 g-ugu(gcga -)acmngua- UAG|A-ACG| A--UCACUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAG- C(gagau--- ---------- ---------- ---------- 4621 --)CCUUGAA |GGGCGAAGC G-GGG|AAGG GUU|CCACGC UA-ACA(-UU GAU)UG|GGC 4681 GUGGGUGAGU |-CGU-UCCU AAGC------ ---------- 4921 ----GC-GAA AGGGA-AG-C AGG(UUUACA UU-)CCUGC| -AC----acg gaugugg-ag 4981 gc[ggugac- -----gcu-- ---------- ---------- --------(- -------)-- 5041 ---------- ---------- ---------- ---------- -----uu-a] uug-aggcga 5101 acac-----a uug--gcgau gg-c-gcua- -GG-CAGA(G UUGUCUUU-) UCUGUU-|UA 5161 A-ccguuug- --------u- --a|uauauu gugu-ggagu ---ccg(auu au-)cgggag 5221 aaacac-aua ua-------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- -----uac-g gGC-----AG 5341 -AGCGCCGG( -ggcuuau)C CGGCGU-c-u agcucg---c -caucg--ac gauC-CUUGA 5401 AAc-uuugcc -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ---------- -ugcugaau- ---------- ----uuuaau aucc-acg-- cc-gugGCGU 5581 A|CC--GAUC ACC(GCAUCA )GG|UCC-CC GAGGU(GAAC A)GCCUCU-| GCUCA-||A- 5641 uauG--AAAA AU-GCAG-GU A-AGGGAAGU CGGCAA-AUU -AGACCCGUA AC(UUUG)GG 5701 AAAAGGGUU| GGCUCUAGU- ---------- -(-----)---- -------ACU AGAACU|G(- --CAA)CGGG 6601 CAAAGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--GG G|CCG(---- 6661 uggc)CGG-- ---------- --U-GAUGAC GCAAUGUG-- AUUUCUGCUC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaga) -----uucaa ----UCAAGC G|CGGGUAAA 6781 C|AGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCU ACUGU-CCCU AUCUGCU-UC 6901 UA|GCGAAAC C|ACA-GCCG AG(GGAA-CG GG)CUCGGCG -A-AAU-CGG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AUUCU A---AUU-UU |GUGAAGCAA GUUGGGAGGU 7021 GUAGCAUAGG UGGGAGCG-- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -CUUG)---- 7141 --------CG C-GUCCGUGA AA-UACCACU |ACUCCCAG- -UCUUG-CUU UACUUAc--- 7201 ------(--- --)------| --<---u--a gguuagugug gaugagucuu acgacuucau 7261 uuuagaacca aaccaguuua cugguaacca cagccua--- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- ---------- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- -------->g cACAC-AUUU A-GGAG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUUC (UACAAGACA AC-)GAAG-G U|G|U|CCA- AAGAU-AAGC |UCAGU-GAG 7621 -A(ACA---- GAAA)UCUCA CGUAGC|GC( A|A--AAGG) GUAAAAG-CU U-GUUUUAUU 7681 -UUGAUUU(u c--agugc-- )GAGUCGAAA ACGC(-GAAA )GCGUGG|CC --UAU|CGA- 7741 UCCUUUcac- ---------- ---------- ---------- --(----)-- ---------- 7801 ---------- ---------- --ga-uuc(- -gaga-u--u u---)----- ---------- 7861 -----gaa|g cgAGAG-GUG UC|AGA--AA AGU~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS P.pinnatif 9262 bp RNA RNA 02-SEP-1998 DEFINITION Ptilophora pinnatifida.. ACCESSION No information KEYWORDS No information. SOURCE Ptilophora pinnatifida. ORGANISM Ptilophora pinnatifida. REFERENCE 1 (bases 1 to 363) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE large-subunit rRNA sequence data A multigene phylogeny of the Gelidiales including nuclear JOURNAL J. Appl. Phycol. (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF039547 LOCUS AF039547 2497 bp DNA PLN 02-SEP-1998 DEFINITION Ptilophora pinnatifida large subunit ribosomal RNA gene, partial sequence. ACCESSION AF039547 NID g3510594 KEYWORDS . SOURCE Ptilophora pinnatifida. ORGANISM Ptilophora pinnatifida Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Ptilophora. REFERENCE 1 (bases 1 to 2497) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE A multigene phylogeny of the Gelidiales including nuclear large-subunit rRNA sequence data JOURNAL J. Appl. Phycol. (1998) In press REFERENCE 2 (bases 1 to 2497) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE Direct Submission JOURNAL Submitted (22-DEC-1997) CMSR, UNCW, 7205 Wrightsville Avenue, Wilmington, NC 28403, USA REFERENCE 3 (bases 1 to 2497) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE Direct Submission JOURNAL Submitted (01-SEP-1998) CMSR, UNCW, 7205 Wrightsville Avenue, Wilmington, NC 28403, USA REMARK Sequence update by submitter COMMENT On Sep 2, 1998 this sequence version replaced gi:2865449. FEATURES Location/Qualifiers source 1..2497 /organism="Ptilophora pinnatifida" /db_xref="taxon:37204" /note="Palm Beach, Natal, South Africa" rRNA <1..>2497 /product="large subunit ribosomal RNA" BASE COUNT 644 a 516 c 742 g 593 t 2 others BASE COUNT 644 a 516 c 742 g 593 t 6767 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~(~~~~~~ ~)~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~cagu 901 ucaggaaa-- --g-uga-c( a--uggaaa- -u)guc-c-- ---------- --------GC 961 --|C(GUG)G |AGGG-(UGA UAGC)-CCCG UC|-cauccu gaucaggacg cuc---u--- 1021 ---guaaaca gaauauuu-c aaau------ ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUA GUU(----UG 1141 GGAA)UGCUG CUCUAA---- -UUGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUCU-- ---------- ---------- ---------- )CAU-CAAAG GCU----AAA 1381 UA-------- ---------- acgaU-GGAA GACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAU- GAAA-AGCAC UUU(ga-aa- )AGAA-GGUG --AAAAGAAC C-UGAAAC-C 1501 GUUAC-ggg< gg---aagcg gauugcau-u auucuaguau uagcguguuc aaccuuuuag 1561 gugcauugac -gcuaaaacu uaucugcugu gaauuuuuaa ugaucgauuu uggauuguug 1621 aagauugagg gcuccacuuu gugugaggac ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- -------agc ggau-ugacg augcgauacg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAGCGCGGGU GCGAGUCg-g aag-gu---( ----g-uaaa 2641 a-)------- ---------- ---a-ccug- ---------- --ugggcGAA GU(GAAA)GC 2701 GA[gaaaaaa cucucaguuu gaggcggcau auuuucguug aaaauagguc cgacc----- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- -]-------- ---------U UGAGCAGUU- 3181 -GCG-CUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCGG- AG|U-AGGGC AAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-GUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU CGAACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUUCCUC CGAAGUUUCU --(CUCA)GG 3421 AUAGC--GGG -CCGaca|-- -|-uagug-- ---u------ ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 --uguUUUGU -G|CGG--UA AA-GCGAAUG AUUAGCGUA- -----UUUGG GGGC--(auu 3721 u-a)--GCCU U-CAG-|ACG AUUC-UCAAA CUUUC-AAUG |CGCAAG-gg -uguugcug- 3781 --cuuaauug agcuu-ca-c cggua----- ---------- ---------- ---------- 3841 ---------- ---------- ----aaaacg u|CG-GCCCU --GU-GGGCC -ACU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUACGG(GA- UGAA)CCG-- UAAGCAC--- GGUUAAG--G 3961 C|GCCG-GAC U-A--CU-CG CU-ua--u-- --------ag auccca---- cAAAAGGUGU 4021 U--GAUUCAU CGAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(CAA)G 4081 |GAGUGU(GU AACA)GC|-- -UCACCUGCC -GAAUGAGUU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- UAAGCGGGU| G|-------- --GCCGAC-- --ACCGUGC| (- -----)--uu cagau-gAGU AGGA------ 4441 --GGA|-CG- UG-GU-GA-- --------U- -C-G-UGA-- c------GAA Guau------ 4501 g-cgu(gcga -)acgngua- UCG|A-ACG| A--UCACUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAG- C(gagau--- ---------- ---------- ---------- 4621 --)CCUUGAA |GGGCGAACG G-GGG|AAGG GUU|CCACGC UA-ACA(-UU GAU)UG|GGC 4681 GUGGGUGAGU |-CGU-UCCU AAGC------ ---------- 4921 ----GC-GAA AGGGA-AG-C GGG(UUUACA UU-)CCCGC| -AC----acg gaugugg-ag 4981 gc[ggugac- -----gcu-- ---------- ---------- --------(- -------)-- 5041 ---------- ---------- ---------- ---------- -----uu-a] uug-gggcga 5101 acac-----g cug--gcgau gg-c-gcug- -GG-CAGA(G UUGUCUUU-) UCUGUU-|UG 5161 A-ccguuug- --------c- --g|caugca gugu-ggagu ---ccg(cuu gu-)cgggag 5221 aaacac-gca ug-------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- -----cgc-g gGC-----AU 5341 -AGCGCCGG( -ggcuuau)C CGGCGU-c-c agcucg---c -caucg--ac ggcC-CUUGA 5401 AAc-uuugcc -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ---------- -ugcuggu-- ---------- ----uuuaga a-ucnacg-- cc-gugGCGU 5581 A|CC--GAUC ACC(GCAUCA )GG|UCC-CC GAGGU(GAAC A)GCCUCU-| GCUCA-||A- 5641 uauG--AAAA AU-GCAG-GU A-AGGGAAGU CGGCAA-AUU -AGACCCGUA AC(UUUG)GG 5701 AAAAGGGUU| GGCUCUAGU- ---------- -(-----)---- -------ACU AGAACU|G(- --CAA)CGGG 6601 CAAAGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--GG G|CCG(---- 6661 uggc)CGG-- ---------- --U-GAUGAC GCAAUGUG-- AUUUCUGCUC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaga) -----uucaa ----UCAAGC G|CGGGUAAA 6781 C|AGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCU ACUGU-CCCU AUCUGCU-UC 6901 UA|GCGAAAC C|ACA-GCCG AG(GGAA-CG GG)CUCGGCG -A-AAU-CGG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AUUCU A---AUU-UU |GUGAAGCAA GUUGGGAGGU 7021 GUAGCAUAGG UGGGAGCG-- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -CUUG)---- 7141 --------CG C-GUCCGUGA AA-UACCACU |ACUCCCAG- -UCUUG-CUU UACUUAc--- 7201 ------(--- --)------| --<---u--a gguaagcgug gaugagucuu acgacuucau 7261 uuuagaacca aaccagcuug cuggugacca cagccua--- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- ---------- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- -------->g cACAC-AUUU A-GGAG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUUC (UACAAGACA AC-)GAAG-G U|G|U|CCA- AAGAU-AAGC |UCAGU-GAG 7621 -A(ACA---- GAAA)UCUCA CGUAGC|GC( A|A--AAGG) GUAAAAG-CU U-GUUUUAUU 7681 -UUGAUUU(u c--agugc-- )GAGUCGAAA ACGC(-GAAA )GCGUGG|CC --UAU|CGA- 7741 UCCUUUcac- ---------- ---------- ---------- --(----)-- ---------- 7801 ---------- ---------- --ga-uuc(- -gaga-u--u u---)----- ---------- 7861 -----gaa|g cgAGAG-GUG UC|AGA--AA AGU~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS P.subcosta 9262 bp RNA RNA 02-SEP-1998 DEFINITION Ptilophora subcostata.. ACCESSION No information KEYWORDS No information. SOURCE Ptilophora subcostata. ORGANISM Ptilophora subcostata. REFERENCE 1 (bases 1 to 363) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE A multigene phylogeny of the Gelidiales including nuclear large-subunit rRNA sequence data JOURNAL J. Appl. Phycol. (1998) In press STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF039546 LOCUS AF039546 2506 bp DNA PLN 02-SEP-1998 DEFINITION Ptilophora subcostata large subunit ribosomal RNA gene, partial sequence. ACCESSION AF039546 NID g3510593 KEYWORDS . SOURCE Ptilophora subcostata. ORGANISM Ptilophora subcostata Eukaryota; Rhodophyta; Florideophyceae; Gelidiales; Gelidiaceae; Ptilophora. REFERENCE 1 (bases 1 to 2506) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE A multigene phylogeny of the Gelidiales including nuclear large-subunit rRNA sequence data JOURNAL J. Appl. Phycol. (1998) In press REFERENCE 2 (bases 1 to 2506) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE Direct Submission JOURNAL Submitted (22-DEC-1997) CMSR, UNCW, 7205 Wrightsville Avenue, Wilmington, NC 28403, USA REFERENCE 3 (bases 1 to 2506) AUTHORS Freshwater,D.W. and Bailey,J.C. TITLE Direct Submission JOURNAL Submitted (01-SEP-1998) CMSR, UNCW, 7205 Wrightsville Avenue, Wilmington, NC 28403, USA REMARK Sequence update by submitter COMMENT On Sep 2, 1998 this sequence version replaced gi:2865448. FEATURES Location/Qualifiers source 1..2506 /organism="Ptilophora subcostata" /db_xref="taxon:37205" /note="Katasehigashihama, Fujisawa, Kanagawa, Japan" rRNA <1..>2506 /product="large subunit ribosomal RNA" BASE COUNT 654 a 508 c 731 g 609 t 4 others BASE COUNT 654 a 508 c 731 g 609 t 6760 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~(~~~~~~ ~)~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~gu-cagu 901 uuaggaaa-- --g-uga-c( a--uggaaa- -u)guc-c-- ---------- --------GC 961 --|C(GUG)G |AGGG-(UGA UAGC)-CCCG UC|-cauccu aaucaggacg cuc---u--- 1021 ---guaaaca gaauauuu-c aaau------ ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUA GUU(----UG 1141 GGAA)UGCUG CUCUAA---- -UUGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUCU-- ---------- ---------- ---------- )CAU-CAAAG GCU----AAA 1381 UA-------- ---------- augaU-GGAA GACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAU- GAAA-AGCAC UUU(ga-aa- )AGAG-GGUG --AAAAGAAC C-UGAAAC-C 1501 GUUAC-ggg< gg---aagcg gauugcau-u auucuaguau uagcguguuc aaccuuuuag 1561 gugcauugac -gcuaaaacu uaucugcugu gaauuuuuaa ugaucgauuu uggauuguua 1621 aagauugagg gcuc------ ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- -----cacaa uuuuuuuugu gugaagacag 2101 cggauugac- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------g augcgauacg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAGCGCAGGU GCGAGUCg-g aag-gu---( ----g-uaaa 2641 a-)------- ---------- ---a-ccug- ---------- --ugggcGAA GU(GAAA)GC 2701 GA[gaaaaaa cucucaguuu gaggcggcau auuuucguug aaaauagguc cgacc----- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------- ---------- ---------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 ---------- ---------- ---------- -]-------- ---------U UGAGCAGUU- 3181 -GCG-CUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCGG- AG|U-AGGGC AAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-GUGCUGA (CGUGCAAA) 3301 UCG-C-UCGU CGAACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUUCCUC CGAAGUUUCU --(CUCA)GG 3421 AUAGC--GGG -CCGaca|-- -|-uagug-- ---u------ ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 --uguUUUGU -G|CGG--UA AA-GCGAAUG AUUAGCUUA- -----UUUGG GGAA--(auu 3721 u-a)--UUCU U-CAG-|ACG AUUC-UCAAA CUUUC-AAUG |CGCAAG-gg -uguugcug- 3781 --cuuaauug agcuu-ca-c cggua----- ---------- ---------- ---------- 3841 ---------- ---------- ----aaaacg u|CG-GCCCU --GU-GGGCC -ACU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUACGG(GA- UGAA)CCG-- UAAGCAC--- GGUUAAG--G 3961 C|GCCG-GAC U-A--CU-CG CU-ua--u-- --------ag auccca---- cAAAAGGUGU 4021 U--GAUUCAU CGAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(CAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGARUU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- UAAGCGGGU| G|-------- --GCCGAC-- --ACCGUGC| (- -----)--uu cagau-gAGU AGGA------ 4441 --GGA|-CG- UG-GU-GA-- --------U- -U-G-UGA-- c------GAA Guau------ 4501 g-cgu(gcga -)acgngua- UUG|A-ACG| A--UCACUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAG- C(gagau--- ---------- ---------- ---------- 4621 --)CCUUGAA |GGGCGAACN G-GGG|AAGG GUU|CCACGC UA-ACA(-UU GAU)UG|GGC 4681 GUGGGUGAGU |-CGU-UCCU AAGC------ ---------- 4921 ----GC-GAA AGGGA-AG-C GGG(UUUACA UU-)CCCGC| -AC----acg gaugugg-ag 4981 gc[ggugac- -----gcu-- ---------- ---------- --------(- -------)-- 5041 ---------- ---------- ---------- ---------- -----uu-a] uug-gggcga 5101 acac-----g cug--gcgau gg-c-gcug- -GG-CAGA(G UUGUCUUU-) UCUGUU-|UA 5161 A-ccguuug- --------c- --g|caugcg gugu-ggagu ---ccg(cuu gu-)cgggag 5221 aaacac-gca ug-------- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- -----cgc-g gGC-----AU 5341 -AGCGCCGG( -ggcuuuu)C CGGCGU-c-c agcucg---c -caucg--ac ggcC-CUUGA 5401 AAc-uuugcc -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ---------- -ugcuggu-- ---------- ----uuuaga a-ucnacg-- cc-gugGCGU 5581 A|CC--GAUC ACC(GCAUCA )GG|UCC-CC GAGGU(GAAC A)GCCUCU-| GCUCA-||A- 5641 uauG--AAAA AU-GCAG-GU A-AGGGAAGU CGGCAA-AUU -AGACCCGUA AC(UUUG)GG 5701 AAAAGGGUU| GGCUCUAGU- ---------- -(-----)---- -------ACU AGAACU|G(- --CAA)CGGG 6601 CAAAGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--GG G|CCG(---- 6661 uggc)CGG-- ---------- --U-GAUGAC GCAAUGUG-- AUUUCUGCUC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaga) -----uucaa ----UCAAGC G|CGGGUAAA 6781 C|AGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCU ACUGU-CCCU AUCUGCU-UC 6901 UA|GCGAAAC C|ACA-GCCG AG(GGAA-CG GG)CUCGGCG -A-AAU-CGG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AUUCU A---AUU-UU |GUGAAGCAA GUUGGGAGGU 7021 GUAGCAUAGG UGGGAGCG-- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -CUUG)---- 7141 --------CG C-GUCCGUGA AA-UACCACU |ACUCCCAG- -UCUUG-CUU UACUUAc--- 7201 ------(--- --)------| --<---u--a gguaagcgug gaugagucuu acgacuucau 7261 uuuagaacca aaccagcuug cuggugacca cagccua--- ---------- ---------- 7321 ---------- ---------- ---------- ---------- ---------- ---------- 7381 ---------- ---------- ---------- ---------- ---------- ---------- 7441 ---------- ---------- ---------- ---------- ---------- ---------- 7501 ---------- -------->g cACAC-AUUU A-GGAG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUUC (UACAAGACA AC-)GAAG-G U|G|U|CCA- AAGAU-AAGC |UCAGU-GAG 7621 -A(ACA---- GAAA)UCUCA CGUAGC|GC( A|A--AAGG) GUAAAAG-CU U-GUUUUAUU 7681 -UUGAUUU(u c--agugc-- )GAGUCGAAA ACGC(-GAAA )GCGUGG|CC --UAU|CGA- 7741 UCCUUUcac- ---------- ---------- ---------- --(----)-- ---------- 7801 ---------- ---------- --ga-uuc(- -gaga-u--u u---)----- ---------- 7861 -----gaa|g cgAGAG-GUG UC|AGA--AA AGU~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~|~~~ 7981 ~~|~~~~|~~ ~~~~~~~(~~ ~~~~)~~~~~ ~~~~~~~~~| ~~~~~(~~~~ ~)~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~~~~~~ 8161 ~~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~)~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~>~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ 8281 ~(~~~~)~~~ ~~~)~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~(~~~~)~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~)~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~> ~~|~~~~~~( ~~~)~~~~~~ 8701 ~~~~~~~~~~ |~~~~~(~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (3)-Viridi 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS C.ellipsoi 9262 bp RNA RNA 11-JAN-191 DEFINITION Chlorella ellipsoidea str. IAM C-87. ACCESSION No information KEYWORDS No information. SOURCE Chlorella ellipsoidea str. IAM C-87. ORGANISM Chlorella ellipsoidea. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: D17810+D13340 LOCUS CHLLSURRNA 3795 bp ds-DNA PLN 07-SEP-1994 DEFINITION Chlorella ellipsoidea gene for LSU rRNA. ACCESSION D17810 KEYWORDS LSU ribosomal RNA. SOURCE Chlorella ellipsoidea (strain IAM C-87) (library: genomic library) DNA, clone pRNE101 and pRNH010. ORGANISM Chlorella ellipsoidea Eukaryota; Chlorophycota; Chlorophyceae; Chlorococcales; Oocystaceae. REFERENCE 1 (bases 1 to 3795) AUTHORS Aimi,T., Yamada,T., Yamashita,M. and Murooka,Y. TITLE Charaterization of the nuclear large-subunit rRNA-encodign gene and the group-I self splicing intron from Chlorella ellipsoidea C-87 JOURNAL Gene 145, 139-144 (1994) COMMENT Submitted (01-Oct-1993) to DDBJ by: Takashi Yamada Department of Fermentation Technology Faculty of Engneering Hiroshima University 1-4-1 Kagamiyama, Higashi-Hiroshima Hiroshima 724 Japan Phone: 0824-24-7769 Fax: 0824-22-7191. NCBI gi: 535783 FEATURES Location/Qualifiers source 1..3795 /organism="Chlorella ellipsoidea" /strain="IAM C-87" /sequenced_mol="DNA" /clone_lib="genomic library" BASE COUNT 972 a 873 c 1106 g 844 t ORIGIN BASE COUNT 899 a 807 c 1013 g 794 t 5749 others ORIGIN 1 |--------- ---------- ---------- -ugacaACUC UCAACAACGG AUA|UCUUGG 61 |CUCCCGC|A U|-CGAUGAA GAA|CGCA(- -GCGA-AA)U |GC-GAUACG UA-gugu|[- 121 gaauugcaga auuccgugaa u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---caucg|A AUCUUU-GAA CGC-(auauu )-g-c|gcuc 241 gag------a c(-------- ---------- ---------- -----cucg- ---)gu---- 301 --ca-agagc ---augucug -g-cu-cagc gucgg-(cuc a--------/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --------uu )-ucgaccug agcucagg-c aAG----ACU 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UC AAUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-C)AG-G AU|UCCCCUA GU---AAC(G GCGA)GUG-A A-----CCGG GAAA------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------acuu gaaaaucucc 781 agcc--(-uu c--)----gg cuggcgaauu guagucuau- agaggcgucc ucu------- 841 ------gu-- ---------- ---------- ---------- ---------- ggcua-accg 901 gucu-caa-- --g-ugc-c( u-(uggaaa- )g)gga-c-- ---------- --------GU 961 --|C(AGA)G |AGGG-(UGA GAAC)-CCCG UC|----gga ccggugc-ag cuc---ac-- 1021 uucac----- --gaggcg-c uuucgca--- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GUU(----UG 1141 GGAA)UGCAG CCCUAA---- gcAGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUCC-- ---------- ---------- ---------- )CAU-CUAAG GCU----AAA 1381 UA-------- ---------- CUGGC-GGGA GACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAUG -AAA-AGAAC UUU(ga-aa- )AGAG-AGUU A-AACAGUAC U-UGAAAU-U 1501 GUUGA-GAG< gg---aagag auuggaag-u c--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ----gcgggu gcgcccaggc uu---au--g 2221 ca-cgcc(uc ac-)ggcg-- ugc--uguau gug----cug ggcgcugguc agca-|ucga 2281 uucgc-aggc ucguacaaca -gcggag--- ---------- ----(guuga ua)------- 2341 ---------- --cuccgu-- caaug--cga gc-ucgc-gg aucgaggccu c--aagcgug 2401 c----cc(uu u--)gg---- gucc-(uucg -)-ggaacu- gcgcgcucag g--------- 2461 ---------- ---------- ---------- ---------- ---------- ---------a 2521 ugcu-ggc-- ---------- gga-agg--- cuuccaaucu >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUGUAU GCGAguug-g ugggu----( ------g-au 2641 aa)------- ---------- ---a-ccca- ---------- --u----GAA GC(GCAA)GU 2701 AA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- --ccugacug guggga--gg gc-------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----cugu-- ----)----- ---------- ------gccu --gcaccauc 3061 g--------- ---------- ---------- ---------- -------acc ga-cc--aug 3121 au-(c-uucu -)-gugaaa- -ggu-uugag u]-------- ---------A CGAGCAUAC- 3181 -CUG-UUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AG|C-AGGGC GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G AU-GUGCUGA (CGUGCAAA) 3301 UCG-C-UUUU CGGACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CCCA)GG 3421 AUAGC-UGGA -GCUc--|-- -|-ggu---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 -caguUUUAU -C|GGG--UA AA-GCGAAUG AUUAGAGGU- -----ACCGG GGAA--(gaa 3721 a-c)--UUCC U-CGA-|CCU AUUC-UCAAA CUUUA-AAUA |GGUAAGacg -ucugaguu( 3781 gcuuaauug) aacucagg-c auu------- ---------- ---------- ---------- 3841 ---------- ---------- ----caauga g|AG-CUCCA -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- AAAGUCG--- AGUUAAG--G 3961 U|GCCC-GAC U-G--UG-CG CUAACcua-- --------ga ucccac---- -AAAGAGUGU 4021 U--GGUUGAU AUAGACA-GC AGGACGGUGG UC(AUGG-AA GUC)GAAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CU-CGA AAA--UGGAU 4141 G--GCG-CU- UAAGCGCAC| G|-------- --ACCUAU-- --ACUCGGC| (- -----)-gcc uccau-gAGU AGGA------ 4441 --GGG|-CG- UG-GG-UG-- --------u- -u-g-uga-- c------GCA GCCU-----G 4501 C-GGC(GUGA -)GCCGGGG- UGA|A-ACA| G--CACCUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GACUGAAGU G-GAG|AAAG GUU|CCAUGU GA-ACA(-GC AAU)UG|GAC 4681 AUGGGUUAGU |-CGA-UCCU AAGA------ -------<-g augggg(-ua au)ccu--gu 4741 a---ucaag- --ggugc--- ---------- ---------- (aauua---) ---------- 4801 --------gc accgccca-- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA AGGGA-AA-A GGG(UUAAGA UU-)CCCUU| -AC----cug gacaagg-cg 4981 gc[ug----- ---------- ---------- ---------- -----acg(- -guaa--)cg 5041 u--------- ---------- ---------- ---------- -----aa-g] cga-guccgg 5101 agac-----g ccg--gcggu gg-c-ccug- -GG-AAGA(G UUCUCUUU-) UCUUUU-|UA 5161 A-cagcuc-- ---------- gaa|gg---c ccugg-aauc ----gg(auc au-)ccggag 5221 au-ag-gg-- cucag----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----uggc-u gGU-----AA 5341 AGCACCGCA( -cgucu--)C GCGGUGUC-c ggcgcg---c -caucg--ac gguC-CUUGA 5401 AAA-uccgga g<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- -gagcauuu- ---------- -------ccg -auc-uug-- cc-aggUCGU 5581 A|CU--CAUA ACC(GCAUCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| AGUCG-||A- 5641 UA-G--AACA AU-GUAG-AU A-AGGGAAGU CGGCAA-AAU -AGAUCCGUA AC(UUCG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- -(-----)---- -------CUC AGAACU|G(- --GUA)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGUG|A--UG G|UCC(---- 6661 uaaa)GGA-- ---------- --U-GUUGAC ACAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU AUCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGAA -G-AAA-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCC G---ACU-UU |GUGAAAUGA CUUACGAGGU 7021 GUAGAAUAAG UGGGAG---- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- --cuu)---- 7141 --------CG GCGCCGGUGA AA-UACCACU |ACUUGUAA- -cGUUA-UUU UACUUAu--- 7201 ---------- ---------| --a GACAU-UGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAAAGAUA AC-)GCAG-G U|G|U|CCU- AAGAUGGAGC |UCAAC-GAG 7621 -A(ACA---- GAAA)UCUCG UGUGGA|AC( A|A--AAGG) GUAAAAG-CU C-AUUUGAUU 7681 -UUGAUUU(u c--aguac-- )GAAUACAAA CUGU(-GAAA )GCAUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -ccC-UUC(- -GGGA-U--U U---)----- ---------- 7861 -----GAA|G CUAGAG-GUG UC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UG U-GCCCG(CA -GC-)AGAGC ACAA-GUGU| CGGCU(UGUU C)ACCCGCUA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GUUGG--<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->uucga uu--c-cgcC AUAGUAAUUC GGCU(CAGUA 8281 C(GAGA)GGA AC-)CGCCGA U|UCGGAUAA UUGGUAA-UG CGC|-UCGCC U(GAAA)AGG 8341 CGUUGGCGCA A-CGCUACC- AU-CCGU--A GUCUAACCGC U(GAACGCCU C-U-A)AGCU 8401 GGAAGACG-U GCUA--g-gu gcgg---agu c --|------( ---)------ 8701 ---guaaauc |ccuug(-ca gacga)cu-u ggcu-----c g-a|acccgg uauuguaagc 8761 gg-uagagug gc----(cuu -gcu------ ---------- ---------- ---------- 8821 ----)----g cuacgauc-c gc-|ugagau u|cag--ccg u--ggu-u-c gga-aga-uu 8881 uuc--|---- ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Fun.hygrom 9262 bp RNA RNA 21-APR-1997 DEFINITION Funaria hygrometrica.; 18S ribosomal RNA; 25S ribosomal RNA; 5.8S ribosomal RNA; IGS; intron; ITS1; ITS2. ACCESSION X80212 KEYWORDS 18S ribosomal RNA; 25S ribosomal RNA; 5.8S ribosomal RNA; IGS; intron; ITS1; ITS2. SOURCE Funaria hygrometrica. ORGANISM Funaria hygrometrica. REFERENCE 1 (bases 1 to 11132) AUTHORS Capesius,I. TITLE hygrometrica Analysis of the ribosomal RNA gene repeat from the moss Funaria JOURNAL Plant Mol. Biol. 33 (3), 559-564 (1997) STANDARD No information REFERENCE 2 (bases 1 to 11132) AUTHORS Capesius,I. TITLE Direct Submission JOURNAL Submitted (03-SEP-1994) I. Capesius, Botanisches Institut, UniversitSigmat Heidelberg, Im Neuenheimer Feld 360, 69120 Heidelberg, Germany STANDARD No information REFERENCE 3 (bases 1 to 11132) AUTHORS Capesius,I. TITLE Direct Submission JOURNAL Submitted (15-APR-1996) I. Capesius, Botanisches Institut, UniversitSigmat Heidelberg, Im Neuenheimer Feld 360, 69120 Heidelberg, Germany STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X80212 BASE COUNT 892 a 841 c 1061 g 782 t 5686 others ORIGIN 1 |--------- ---------- ---------- -auaCAACUC UCAGCAACGG AUA|UCUUGG 61 |CUCUUGC|A A|-CGAUGAA GAA|CGCA(- -GCGA-AA)U |GC-GAUACG UA-gugu|[- 121 gaauugcaga auuccgcgaa u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---caucg|A GUUUUU-GAA CGC-(aaguu )-g-c|gccc 241 gag------g c(-------- ---------- ---------- -----ucg-- ---uc----- 301 --cg-agggc ---auuccug -c-ca-gagc guca--(--- --uc-----/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ------gcag )-cagaccuc ugaucagg-a aag----UCU 481 AC|CCGCUGA -G--UU|UA( AGCA)UA-UC ACUAAG-C-G G-AGGAGA-- --AGAAACU( 541 AAC-C)AG-G AU|UUCCCUA GU---AAC(G GCGA)GCG-A A-----CCGG AAAG------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------gcuu gaaaaucggg 781 gugc--(uuc ---)---gug cc-ccgaauu guagucugg- agaagcgucc ucu------- 841 -----gca-- ---------- ---------- ---------- ---------- gc-gg-gucg 901 gccc-caa-- --g-uuc-c( c-(uggaau- )g)gga-u-- ---------- --------GC 961 --|C(CAA)G |AGGG-(UGA CAGC)-CCCG UC|--g-agg ccggucccug c-----ugcu 1021 ccac------ -gaggcgc-g aucugc---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGCU GUU(----UG 1141 GGAA)UGCAG CCCUAA---- guGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUC-- ---------- ---------- ---------- )CAU-CUAAG GCU----AAA 1381 UA-------- ---------- UUGGC-AAGA GACCGAUAGC GAAC-AAGUA CC(GCGA)G- 1441 G-GAAAGAUG -AAA-AGGAC UUU(ga-aa- )AGAG-AGUU A-AACAGUGC U-UGAAAU-U 1501 GCUGG-GAG< gg---aagcg aauggaag-c u--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ----gcgggu gugccccggu ugg--augug 2221 gaacggc(uu cg-)gcugg- ucugccgcu- -caacgcggg gcacugguca gcgug|ggcu 2281 accuc-ggcg ggacaagag- -cgggaug-- ---------- -----(uag- -)-------- 2341 ---------- --uuucccg- -ccua--ugc cg-ccga-gg uggccgaggc acgaagcgcg 2401 c-ggccc(cu c--)gggucg uggga(cucg -)ucccaacu gcgcgcucgg g--------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 acgc-ugg-- --------cg uauugagcu- cuu-cauccg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUGUAU GCGAGCAg-g ugggc----( -------ggc 2641 aa)------- ---------- ---a-ccca- ---------u u-gaUGCGUA AG(UAAA)CU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------cag gugggac-cc c--------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( --ccucaaaa ----)----- ---------- -------ggg -cgcaccauc 3061 c--------- ---------- ---------- ---------- -------gu- ga-ucu---- 3121 -u-(c-ugug a)-a------ aggu-uugag u]-------- ---------G UGAGCAUAC- 3181 -CUG-UUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AG|C-AGGGC GAAG-CAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-AUACUGA (CGUGCAAA) 3301 UCG-U-UCGU CAGACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGA -GCU--c|-- -|-gug---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- -------uaa 3661 g-aguUUUAU -C|AGG--UA AA-GCGAAUG AUUAGAGGC- -----AUCGG GGGU--(gua 3721 a-c)--ACCC U-CGA-|CCU AUUA-UCAAA CUUUA-AAUA |GGUAAGccg -ccgggguu( 3781 gcuugguug) aaccccgg-c acag------ ---------- ---------- ---------- 3841 ---------- ---------- ----AAU-ga G|AG-CUCCA -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- AAAGCCG--- GGUUACG--G 3961 U|GCCA-AAU U-G--CG-CG CUAACcua-- --------ga ucccac---- -AAAGGGUGU 4021 U--GAUUGAU UAAGACA-GC AGGACGGUGG UC(AUGG-AA GUC)GAAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-CGA AAA--UGGAU 4141 G--GCG-CU- UAAGCGCAC| A|-------- --ACCUAC-- --ACCCGGC| (- -----)ggcu ugaau-GAGU AGGA------ 4441 --GGG|-CG- UG-GG-GG-- --------U- -C-G-Ugg-- a------GCA GCUU-----U 4501 G-GGC(GUGA -)GCC-GAG- UGA|A-ACG| ---CCCCUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GACUGAAGU G-GAG|AAAG GUU|CCAUGU GA-ACA(-GC AAU)UG|GAC 4681 AUGGGUUAGU |-CGA-UCCU AAGA------ -------<-g augggg(-ca au)ccugugu 4741 c---aaugg- --cgc----- ---------- ---------- (aaugc---) ---------- 4801 ---------- gcgccgugca ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA AGGGA-AU-C GGG(UCAAUA UU-)CCCGA| -AC----cgg gacgugg-ca 4981 gc[gg----- ---------- ---------- ---------- -----acg(- -guga--)cg 5041 u--------- ---------- ---------- ---------- ------g-g] cugaauccug 5101 agac-----g ccg--gcggg gg-c-cccu- -GG-AAGA(G UUCUCUUU-) UCUUUU-|UA 5161 A-cagcccg- ---------- ccc|A----C CCUG--GAAU ---CGG(AUU AC-)CCGGA- 5221 GA-UA-GGG- uccag----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----cggc-u gGU-----AA 5341 AGCACCGCA( -CG-UCU-)U GCGGUGUC-a ggug-g---c ccucg---gc gGCC-CUUGA 5401 AAA-ucagga -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggagcgau-- ---------- ----ua-cug -auc-acg-- cc-cggUCGU 5581 A|CU--CAUA ACC(GCCUCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| AGUCG-||A- 5641 UA-G--AACA AU-GUAG-GU A-AGGGAAGU CGGCAA-AAC -AGAUCCGUA AC(UUCG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- -(-----)---- -------CUC AGAACU|G(- --GUA)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--UG G|UCC(---- 6661 ccac)GGA-- ---------- --U-GUUGAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU AUCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGAA -A-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCC G---ACU-UU |GUGAAAUGA CUUAAGAGGU 7021 GUAGAAUAAG UGGGAGCCc- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -ucaa)---- 7141 -------aGG C-GCAAGUGA AA-UACCACU |ACUUUUAA- -CGUUA-UUU UACUUAu--- 7201 ---------- ---------| --a GACAU-UGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAAAGAUA AC-)GCAG-G U|G|U|CCU- AAGAU-GAGC |UCAAC-GAG 7621 -A(ACA---- GAAA)UCUCG UGUGGA|AC( A|A--AAGG) GUAAAAG-CU C-AUUUGAUU 7681 -UUGAUUU(u c--aguac-- )GAAUACAAA CUGU(-GAAA )GCAUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -ucu-UUC(- -GGAA-U--U U---)----- ---------- 7861 -----GAA|G CUAGAG-GUG UC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GA-)AUUCA CCAA-GUGU| UGGAU(UGUU C)ACCCACCA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGC-u<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->--cgG UG-CC-GC-A AUAGUAAUUC AACU(UAGUA 8281 C(GAGA)GGA AC-)CGUUGA U|UCACAUAA UUGGUCAUUG CGU|-UUGGU U(GAAA)AGC 8341 CAGUGACGCG A-AGCUACC- AU-GUGU--A GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCA-U GCUA--g--a aGCG--GCGC u<---uucua ccuccccggu uguuacccga 8461 cuaccaauag gggcgc(uuc gu)gcgcc-- agaagcaugu guc-gagagc uccc---ccg 8521 -ggu-ugcc( ggaaca)ugg cg--gcuugg -gccuuu--g ca-uuacaau uccagacga- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------u cggggaga-> --|------( ---)------ 8701 ----ugaauc |cuuug(-ca gacga)cu-u aaaua---ug g-g|acgagg uauuguaagu 8761 gg-uagagua gc----(cuu -gcu------ ---------- ---------- ---------- 8821 ----)----g cuacgauc-c ac-|ugagau u|ccg--ccu caccgu-c-c caa-cga-uu 8881 ugu~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS E.distachy 9262 bp RNA RNA 14-DEC-1997 DEFINITION Ephedra distachya.; . ACCESSION AF0364 9 KEYWORDS . SOURCE Ephedra distachya. ORGANISM Ephedra distachya. REFERENCE 1 (bases 1 to 3383) AUTHORS Kuzoff,R.K., Sweere,J.A., Soltis,D.E., Soltis,P.S. and Zimmer ,E.A. TITLE The Phylogenetic Potential of Entire 26S rDNA Sequences in Plants JOURNAL Mol. Biol. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 3383) AUTHORS Kuzoff,R.K., Sweere,J.A., Soltis,D.E., Soltis,P.S. and Zimmer,E.A. TITLE Direct Submission JOURNAL Submitted (03-DEC-1997) Botany, Washington State University, 324 Science Hall, Pullman, WA 99164-4238, USA STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF036489 BASE COUNT 804 a 829 c 1038 g 712 t 5879 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~cccc aggucagg-c gGG----AUC 481 AC|CCGCUGA -G--UU|UA( AGCA)UA-UA AAUAAG-C-G G-AGGAAG-- --AGAAACU( 541 UAC-A)AG-G AU|UCCCCUA GU---AGC(G GCGA)GCG-A A-----CCGG GAAC------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------gcau gaaaaucggg 781 cgguc-(cuu gc-)---ggc cguucgaauu guagucugu- agaagcgauc cca------- 841 -----gcg-- ---------- ---------- ---------- ---------- ac-gg-accg 901 ggccc-aa-- --g-ucc-c( c-(uggaag- )g)ggg-c-- ---------- --------GC 961 --|C(GGA)G |AGGG-(UGA GAGC)-CCCG UC|--ggg-c ccggacccug u-----ugca 1021 ucac------ -ggggcgc-u gucggc---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GCU(----UG 1141 GGAA)UGCAG CCCUAA---- ucGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUC-- ---------- ---------- ---------- )CGU-CCAAG GCU----AAA 1381 UA-------- ---------- CGCGC-GAGA GACCGAUAGC GAAC-AAGUA CC(GCGA)G- 1441 G-GAAAGAUG -AAA-AGGAC UUU(ga-aa- )AGAG-AGUC A-AAGAGUGC U-UGAAAU-U 1501 GCCGG-GAG< gg---aagcg aauggagg-c c--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- -----agcga ugcgccccgg ccguaugcag 2221 ga--ugaagu uucuu-c--a gcuugccacu cgg-cucggg gug------- ---------- 2281 ---------- ---------- ---------- ------uuga ucggugcggg ccgaugucgc 2341 ggcacaagcg ggcgcacuug ugugcgcgcg ugccgccgug augucggucg gggagccaag 2401 cacgcgu--c cua-gugac- gggcc(uucg -)-ggcgccu gcgugcucgg u--------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 gcgc-cgg-- --------uc ugc-gggc-- uuuccauucg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUGUGU GCGAGUCG-a cgggu----( -----ucuug 2641 aa)------- ---------- ---a-ccug- ---------- u-gUGGCGCA AG(GAAA)CU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------ccg augggau-cc ccg------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----ccuug- ----)----- ---------- -----cgggg c-gcaccguc 3061 c--------- ---------- ---------- ---------- -------acc ga-ccu-uga 3121 uc-(--uuau -)-gugaa-- gggu-ucgag u]-------- ---------G CGAGCACAC- 3181 -CUG-UUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AG|C-AGGGC GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC CCG-CA---G CG-AUACUGA (CGUGCAAA) 3301 UCG-U-UCGU CUGACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUUCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGA -GCU---|-- -|cgcguc-- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 cgaguUUUAU -C|AGG--UA AA-GCAAAUG AUUAGAGGC- -----CUCGG GGGC--(gua 3721 a-c)--GCCC U-CGA-|CCU AUUC-UCAAA CUUUA-AAUA |GGUAAGacg -gcgcggcu( 3781 gcuucggug) agccgcgc-c augg------ ---------- ---------- ---------- 3841 ---------- ---------- ----AAUcga g|AG-CUCCA -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- AAAGUCG--- AGUUACG--G 3961 U|GCCC-AAC U-G--CG-CG CUAACcca-- --------ga ucccac---- -AAAGGGUGU 4021 U--GGUUGAU UAAGACA-GC AGGACGGUGG UC(AUGG-AA GUC)GAAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-CGA AAA--UGGAU 4141 G--GCG-CU- UAAGCGCGC| G|-------- --accuac-- --acucgac| (- -----)ggcc ucgau-gAGU AGGA------ 4441 --GGA|-CG- CG-GG-GG-- --------U- -C-G-Uug-- a------GAA GCCU-----U 4501 G-GGC(GUGA -)GCCCGGG- UGG|A-CCG| G--CCUCUG- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GACCGAAGU G-GGG|AAAG GUU|CCAUGU GA-ACA(-GC ACU)UG|GAC 4681 AUGGGUUAGU |-CGA-UCCU AAGA------ -------<-g agcggg(-ga g-)ccc--uc 4741 u--gcgaag- --gggcg--- ---------- ---------- (cacuc---) ---------- 4801 --------ug cgcgaaauc- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----uc-gaa AGGGA-AU-C GGG(UUAAUA UU-)CCCGA| -AC----cgg gacaugg-cg 4981 gc[gg----- ---------- ---------- ---------- -----acg(- -gcaa--)cg 5041 u--------- ---------- ---------- ---------- -----ua-g] gga-auccgg 5101 aGAC-----g cug--gcggg gg-c-ccug- -GG-AAGA(G UUAUCUUU-) UCUUUU-|UA 5161 A-cagccug- ---------- ccc|a----C CCUG--AAAU ---CGG(UUC AA-)CCGGA- 5221 GA-UA-GGG- uccag----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----cggc-u gGA-----AG 5341 AGCACCGCA( -cg-ucc-)U GCGGUGUC-c ggugcg---c ccccg---gc ggcC-CUUGA 5401 AAA-uucgga -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaccgag-- ---------- ----ua-ccg -uuc-aug-- cc-cgGUCGU 5581 A|CU--CAUA ACC(GCAUCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| GGUCA-||A- 5641 UA-G--AACA AU-GUAG-GU A-AGGGAAGU CGGCAA-AAC -GGAUCCGUA AC(UUCG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- -(-----)---- -------CUC AGAACU|G(- --GCU)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--CG G|UCC(---- 6661 uuac)GGA-- ---------- --U-GCUGAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU ACCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -A-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCU G---ACU-UU |GUGAAAUGA CUUAAGAGGU 7021 GUAGAAUAAG UGGGAGCcg- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -cucg)---- 7141 -------CGG C-GCAAGUGA AA-UACCACU |ACUUUUAA- -CGUUA-UUU UACUUAu--- 7201 ---------- ---------| --a GACAU-AGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAAAGAUA AC-)GCAG-G U|G|U|CCU- AAGAU-GAGC |UCAAC-GAG 7621 -A(ACA---- GAAA)UCUCG UGUGGA|AC( A|A--AAGG) GUAAAAG-CU C-AUUUGAUU 7681 -UUGAUUU(u c--aguac-- )GAAUACAAA Ccgu(-GAAA )gcgugg|cc --uau|cga- 7741 uccuuuag-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -acC-UUC(- -AGAA-U--U U---)----- ---------- 7861 -----GAA|G CUAGAG-gug uC|aGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GA-)AUUCA CCAA-GUGU| UGGAU(UGUU C)ACCCACCA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGauc<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->---cg cG-UC-GC-A AUAGUAAUUC AACU(UAGUA 8281 C(GAGA)GGA AC-)CGUUGA U|UCACACAA UUGGUCAUCG CGC|-UUGGU U(GAAA)AGC 8341 CAGUGGCGCG A-AGCUACC- GU-GUGU--C GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCA-U GCUAgaa-gc gacg--cucg u<----cccu ccucgauu-g uuaugcgacc 8461 cucg-guagg -gacgc(cuc g-)gcguccc cgauggcacg ugucauuggc aaac---cuc 8521 uccuucgccc guccggcggg ggaggggcgc uacgaaguuc aauuucaaac ag-------- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------u cggcgaga-> --|------( ---)------ 8701 ----ugaauc |cuuug(-ca gacga)cu-u aaaua---cg c-g|acgggg uauuguaagu 8761 gg-cagagug gc----(cuu -gcu------ ---------- ---------- ---------- 8821 ----)----g ccacaauc-c ac-|u~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Gne.gnemon 9262 bp RNA RNA 28-JAN-1997 DEFINITION Gnetum gnemon (Gnetaceae)--this is a gymnosperm; . ACCESSION AF036488 KEYWORDS . SOURCE Gnetum gnemon (Gnetaceae)--this is a gymnosperm. ORGANISM Gnetum gnemon (Gnetaceae)--this is a gymnosperm. REFERENCE 1 (bases 1 to 3414) AUTHORS Doug and Pam Soltis JOURNAL Mol. Biol. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 3414) AUTHORS Kuzoff,R.K., Sweere,J.A., Soltis,D.E., Soltis,P.S. and Zimmer,E.A. TITLE Direct Submission JOURNAL Submitted (03-DEC-1997) Botany, Washington State University, 324 Science Hall, Pullman, WA 99164-4238, USA STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF036488 BASE COUNT 798 a 828 c 1050 g 738 t 5848 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~-~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(-------- ---------- ---------- -----~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~cccc aggucagg-c gGG----GAU 481 AC|CCGCUGA -G--UU|UA( AGCA)UA-UA ACUAAG-C-G G-AGGAAG-- --AGAAACU( 541 UAC-G)AG-G AU|UCCCCUA GU---AAC(G GCGA)GCG-A A-----UCGG GAAA------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------gcgu gaaaaucugg 781 cggc--(ggu c--)----gc cgcccgaauu guagucugc- agaagcgucc ccu------- 841 -----gcg-- ---------- ---------- ---------- ---------- gc-gg-accg 901 agccu-aa-- --g-ucc-c( c-(uggaac- )g)ggg-c-- ---------- --------GC 961 --|C(GGA)G |AGGG-(UGA CAGC)-CCCA UC|--ggg-u ucggacccug c-----ugca 1021 ucac------ -ggggcgc-u aucggc---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GUU(----UG 1141 GGAA)UGCAG CCCUAA---- gcGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUC-- ---------- ---------- ---------- )CGU-CCAAG GCU----AAA 1381 UA-------- ---------- CGCGC-GAGA GACCGAUAGC GAAC-AAGUA CC(GCGA)G- 1441 G-GAAAGAUG -AAA-AGGAC UUU(ga-aa- )AGAG-AGUU A-AAAAGUGC U-UGAAAU-U 1501 GUCGA-GAG< gg---aagcg gauggagg-u c--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ----accguu uccucccggc cgg--acgug 2221 gagcgg---- ---------- ---------- ---------- ---------- -----agcgc 2281 guauacuucg guccgccccu cgguccggua gacgaguccc cguggaucgu uucuccggca 2341 caagcgugcg ugucugccug cgcacgugcu ggcguugcga cggucgaggg uugaagcgug 2401 c-guccc(uu cgg)ggggc- gggcc(ucuu -)-ggcacca gcacgcu--- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 cgggacgugg au------uc ugu-gggc-- uuuccauucg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUGCGU GCGAGUCG-u cgggu----( ------uugg 2641 aa)------- ---------- ---a-cccg- ---------- c-aCGGCGCA AG(GAAG)CU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------aag gcgggau-cc gug------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ---cguggu- ----)----- ---------- -----cgcgg a-gcaccguc 3061 c--------- ---------- ---------- ---------- -------acc ga-ccu-uga 3121 uc-(--uucu u)-gagaa-- gggu-ucgag u]-------- ---------G AGAGCAUGC- 3181 -CUG-UUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AG|C-AGGGC GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC CCG-UC---G CG-AUACUGA (CGUGCAAA) 3301 UCG-U-UCGU CUGACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGA -GCU---|-- -|ugcguucu ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 cgaguUUUAU -C|AGG--UA AA-GCAAAUG AUUAGAGGC- -----AUCGG GGGC--(gca 3721 a-c)--GCCC U-CGA-|CCU AUUC-UCAAA CUUUA-AAUA |GGUAAGacg -gugcggcu( 3781 gcuucggug) agccgcau-c gacg------ ---------- ---------- ---------- 3841 ---------- ---------- ----AAUcga g|AG-CUCCA -AGC-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GC- UGAA)CCG-- AAAGUCG--- AGCUACG--G 3961 U|GCCA-AAC U-G--CG-CG CUAACcca-- --------ga acccac---- -AAAGGGUGU 4021 U--GGUUGAU UAAGACA-GC AGGACGGUGG UC(AUGG-AA GUC)GAAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-CGA AAA--UGGAU 4141 G--GCG-CU- UAAGCGCGU| G|-------- --acccac-- --gcucguc| (- -----)ggcc ccgau-gAGU AGGA------ 4441 --GGG|-CG- CG-GG-GG-- --------U- -C-G-Uug-- c------GAA GCCU-----A 4501 G-GGC(GCGA -)GCCCGGG- UGG|A-GCG| G--CCCCUG- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GACCGACGU G-GAG|AAAG GUU|CCAUGU GA-ACA(-GC ACU)UG|GAC 4681 AUGGGUUAGU |-CGA-UCCU AAGA------ -------<-g augggg(-ga gu)ccc--uu 4741 c--caaugg- --gugc---- ---------- ---------- (cgcucu--) ---------- 4801 ---------g cgcgagauc- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----uc-gaa AGGGA-AU-C GGG(UUAAUA UU-)CCCGA| -AC----cgg gacaugg-cg 4981 gu[gg----- ---------- ---------- ---------- -----acg(- -gcaa--)cg 5041 u--------- ---------- ---------- ---------- -----ca-g] gga-auccgg 5101 aGAC-----g ucg--gcgag gg-c-cccg- -GA-AAGA(G UUAUCUUU-) UCUUUU-|UA 5161 A-cagccug- ---------- ccc|a----C CCUG--AAAU ---CGG(UUC AA-)CCGGA- 5221 GA-UA-GGG- uccag----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----cggc-u gGA-----AG 5341 AGCACCGCA( -cg-ucc-)U GCGGUGUC-c ggugcg---c ccucg---gc ggcC-CCUGA 5401 AAA-uucgga -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- gaaccgcg-- ---------- ----ua-ccg -uuc-aug-- cc-cgGUCGU 5581 A|CU--CAUA ACC(GCAUCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| GGUCC-||A- 5641 UA-G--AACA AU-GUAG-GU A-AGGGAAGU CGGCAA-AAC -GGAUCCGUA AC(UUCG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- -(-----)---- -------CUC AGAACU|G(- --GCU)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--UG G|UCC(---- 6661 cugc)GGA-- ---------- --U-GCUGAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU ACCUACUAUC 6901 UA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCU G---ACU-UU |GUGAAAUGA CUUAAGAGGC 7021 GUAGAAUAAG UGGGAGUcg- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -uucg)---- 7141 -------CGG C-GCAAGUGA AA-UACCACU |ACUUUUAA- -CGUUA-UUU UACUUAu--- 7201 ---------- ---------| --a GACAG-AGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAAAGAUA AC-)GCAG-G U|G|U|CCU- AAGAU-GAGC |UCAAC-GAG 7621 -A(ACA---- GAAA)UCUCG UGUGGA|AC( A|G--AAGG) GUAAAAG-CU C-AUUUGAUU 7681 -UUGAUUU(u c--aguac-- )GAAUACAAA Ccgu(-GAAA )gcgugg|cc --uau|cga- 7741 uccuuuag-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -auC-UUC(- -GGAA-U--U U---)----- ---------- 7861 -----GAA|G CUAGAG-gug uC|aGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GA-)AUUCA CCAA-GUGU| UGGAU(UGUU C)ACCCACCA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGaug<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->---cg cG-CC-GC-G AUAGUAAUUC AACU(UAGUA 8281 C(GAGA)GGA AC-)CGUUGA U|UCACACAA UUGGUCAUCG UGU|-UUGGU U(GAAA)AGC 8341 CAGUGACGCG A-AGCUACC- GU-GUGU--C GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCA-U GCUAgag-gc ggcg--cucu c<----uccu ugucgguu-g cuacgugauc 8461 cgug--guag -gggcg(auu u-)cguugc- ---gcuc--- cc--guuggc aug-ugucga 8521 uggcacuccc uuguuccguu (ugcau)gau ggggcauugg gggccaugca guuccauuuu 8581 ga-------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---gcg-g-u cggcgaga-> --|------( ---)------ 8701 ----agaauc |cuuug(-ca gacga)cu-u aaaua---ca c-g|augggg uauuguaagu 8761 gg-cagagug gc----(cuu -gcu------ ---------- ---------- ---------- 8821 ----)----g ccacgauc-c ac-|uga~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS O.sativa 9262 bp RNA RNA 21-JAN-1985 DEFINITION Oryza sativa 5.8S and 26S str. M16845,M11585. ACCESSION No information KEYWORDS No information. SOURCE Oryza sativa 5.8S and 26S str. M16845,M11585. ORGANISM Oryza sativa 5.8S and 26S. REFERENCE 1 (bases 1 to 3414) AUTHORS No information JOURNAL 355-364(1985) 25S Takaiwa et.al. Gene 37:255-259(1985) STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 9262) Corresponding GenBank entry: M16845,M11585,M35384,M19228. M82048 Phylo:Eukaryotes,Plant BASE COUNT 801 a 973 c 1131 g 636 t 5721 others ORIGIN 1 |--------- ---------- ---------- cacaCGACUC UCGGCAACGG AUA|UCUCGG 61 |CUCUCGC|A U|-CGAUGAA GAA|CGUA(- -GCGA-AA)U |GC-GAUACC UG-gugu|[- 121 gaauugcaga aucccgugaa c--------- ---------- ---------- -------]-- 181 ---------- ---------- ---caucg|A GUCUUU-GAA Cgc-(aaguu )-g-c|gccc 241 gag------g c(-------- ---------- ---------- -----cauc- cg-)gc---- 301 --cg-agggc ---acgccug -c-cu-gggc guca--(--- ---cgc---/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------gcg )--cgacccc aggucagg-c gGG----ACU 481 AC|CCGCUGA -G--UU|UA( AGCA)UA-UA AAUAAG-C-G G-AGGAGA-- --AGAAACU( 541 UAC-G)AG-G AU|UCCCCUA GU---AAC(G GCGA)GCG-A A-----CCGG GAGA------ 601 ---------- ---------- ---------- ---------- -UGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------gcuu gagaaucggg 781 cggc--(cgc ---)---gcc gu-ccgaauu guagucugg- agaggcgucc uca------- 841 -----gcg-- ---------- ---------- ---------- ---------- ac-gg-accg 901 ggcc-caa-- --g-ucc-c( c-(uagaaa- )g)ggg-c-- ---------- --------GC 961 --|C(UGG)G |AGGG-(UGA GAGC)-CCCG UC|--c-ggc ccggacccug u-----cgcc 1021 ccac------ -gaggcgc-c gucaac---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GUU(----UG 1141 GGAA)UGCAG CCCAAA---- ucGGGC-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAACUC-- ---------- ---------- ---------- )CGU-CCAAG GCU----AAA 1381 UA-------- ---------- CAGGC-GAGA GACCGAUAGC GAAC-AAGUA CC(GCGA)G- 1441 G-GAAAGAUG -AAA-AGGAC UUU(ga-aa- )AGAG-AGUC A-AAGAGUGC U-UGAAAU-U 1501 GCCGG-GAG< gg---aagcg gauggggg-c c--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ----ggcga- -ugccccggc cgu--augcg 2221 gaacggc(uu cg-)gcugg- uccgucgau- -cggcucggg gcguggacug uuguc|ggcc 2281 gcgcc-ggcg gccaaagcc- -cgggggc-- ---------- -----(uccg c)-------- 2341 ---------- --gcccccg- --gcagccgu cg-ucggacg cagccgguca cc---gcgcg 2401 -----cc(uc u--)ggccg- gccc-(cucg -)-gggcgu- -cgcgcc--- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 gcaa-cgg-- --------cc ugc-gggc-- uccccauccg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UGACAUGCGU GCGAGUCg-a cgggu----( ------ucug 2641 aa)------- ---------- ---a-ccug- ---------- g-gaUGCGCA AG(GAAG)CU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------cga gcgggag-gc c--------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----cuca-- ----)----- ---------- -------cgc -cgcaccgcu 3061 g--------- ---------- ---------- ---------- -------gcc ga-ccc-uga 3121 uc-(--uucu -)-gugaa-- gggu-ucgag u]-------- ---------U GGAGCACGC- 3181 -CUG-UCGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AG|C-GGGGC GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-AA---G CG-AUACUGA (CGUGCAAA) 3301 UCG-U-UCGU CUGACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGA -GCC--c|-- -|-auu---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------ac 3661 g-aguUCUAU -C|GGG--UA AA-GCCAAUG AUUAGAGGC- -----AUCGG GGGC--(gca 3721 a-c)--GCCC U-CGA-|CCU AUUC-UCAAA CUUUA-AAUA |GGUAGGacg -gcgcggcu( 3781 gcuccggug) agccgcgc-c acgg------ ---------- ---------- ---------- 3841 ---------- ---------- ----AAUcgg g|AG-CUCCA -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- GAAGCCU--- GGUUACG--G 3961 U|GCCG-AAC U-G--CG-CG CUAACcua-- --------ga acccac---- -AAAGGGUGU 4021 U--GGUCGAU UAAGACA-GC AGGACGGUGG UC(AUGG-AA GUC)GAAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-CGA AAA--UGGAU 4141 G--GCG-CU- GAAGCGCG-| -|-------- --ACCCAC-- --A-CAGGC| (- -----)ugcc ccgau-gAGU AGGA------ 4441 --GGG|-CG- CG-GC-GG-- --------c- -C-G-Cgc-- -------AAA ACCC-----g 4501 G-GGC(GCGA -)GCCCGGG- CGG|A-GCG| G--CCGUCG- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GGCCGAAGA G-GAG|AAAG GUU|CCAUGU GA-ACG(-GC ACU)UG|CAC 4681 AUGGGUAAGC |-CGA-UCCU AAGG------ -------<-g acgggg(-ua ac)ccc--gg 4741 c--agaga-- --gcgcg--- ---------- ---------- (acca----) ---------- 4801 --------cg cgcgugcc-- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----CC-GAA AGGGA-AU-C GGG(UUAAGA UUu)CCCGA| -GC----cgg gacgugg-cg 4981 gu[ug----- ---------- ---------- ---------- -----acg(- -gcga--)cg 5041 u--------- ---------- ---------- ---------- -----ua-g] gaa-guccgg 5101 agac-----g ccg--gcggg gg-c-cucg- -GG-AAGA(G UUAUCUUU-) UCUGCU-|UA 5161 A-cggcccg- ---------- cca|a----C CCUG--GAAA ---CGG(UUC AG-)CCGGA- 5221 GG-UA-GGG- uccag----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----cggc-c gGA-----AG 5341 AGCACCGCA( -cg-ucg-)C GCGGUGUC-c ggugcg---c ccccg---gc ggcC-CUUGA 5401 AAA-uccgga -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaccgag-- ---------- ----ua-ccg -ucc-acg-- cc-cggUCGU 5581 A|CU--CAUA ACC(GCAUCA )GG|UCU-CC AAGGU(GAAC G)ACCUCU-| GGCCA-||A- 5641 UG-G--AAGA AU-GUAG-GC A-AGGGAAGU CGGCAA-AAC -GGAUCCGUA AC(UUCG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- -(-----)---- -------CUC AGAACU|G(- --GUA)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--UG G|UCC(---- 6661 ucgc)GGA-- ---------- --U-GC-GAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU GUCUACUAUC 6901 CA|GCGAAAC C|aca-gCCA AG(-GAA-CG GG)CUUGGCG -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCC G---ACU-UU |GUGAAAUGA CUUGAGAGGU 7021 GUAGGAUAAG UGGGAGCC-- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -CUCG)---- 7141 --------GG C-GCAAGUGA AA-UACCACU |ACUUUUAA- -CGUUA-UUU UACUUAu--- 7201 ---------- ---------| --a GACAU-UGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAAAGAUA AC-)GCAGgG U|G|U|CCU- AAGAU-GAGC |UCAAC-GAG 7621 -A(ACA---- GAAA)UCUCG UGUGGA|AC( A|A--AAGG) GUAAAAG-CU C-GUUUGAUU 7681 -CUGAUUU(c c--aguac-- )GAAUACGAA CCGU(-GAAA )GCGUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -acC-UUC(- -GGAG-U--U U---)----- ---------- 7861 -----GAA|G CUAGAG-gug uC|aGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GA-)AUUCA CCAA-GUGU| UGGAU(UGUU C)ACCCACCA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-c<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->---cG UG-CC-GC-G AUAGUAAUUC AACC(UAGUA 8281 C(GAGA)GGA AC-)CGUUGA U|UCACACAA UUGGUCAUCG CGC|-UUGGU U(GAAA)AGC 8341 CAGUGGCGCG a-AGCUACC- GU-GUGC--C GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCA-A GCUA--g-ca aGCG--GCGC c<----ugcg -ccgacgc-c cgcc--ccga 8461 cccacguua- --gggc(gca ga)ccccc-- aagggcccgu gcc-accggc caa----gcc 8521 cgg-ccggc( cgacgc)gc- cgcggccggc -cgccuuc-g aa-gcucccu ucccaacgg- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------g cggcggg--> --|------( ---)------ 8701 ---cugaauc |cuuug(-ca gacga)cu-u aaaua---cg c-g|acgggg cauuguaagu 8761 gg-cagagug gc----(cuu -gcu------ ---------- ---------- ---------- 8821 ----)----g ccacgauc-c ac-|ugagau c|cagucccc g--cgu-c-g cac-gga-uu 8881 cgu--|---- ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS S.cereale 9262 bp RNA RNA 11-JAN-191 DEFINITION Secale cereale (Rye). ACCESSION No information KEYWORDS No information. SOURCE Secale cereale (Rye). ORGANISM Secale cereale (Rye). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: M37231 LOCUS RYENORR1 4507 bp ds-DNA PLN 01-AUG-1990 DEFINITION Rye 26S rRNA 3' end and 18S rRNA, 5' end. ACCESSION M37231 KEYWORDS 18S ribosomal RNA; 26S ribosomal RNA. SOURCE Rye (S.cereale cv. Snoopy) DNA, clone pScE4. ORGANISM Secale cereale Eukaryota; Plantae; Embryobionta; Magnoliophyta; Liliopsida; Commelinidae; Cyperales; Poaceae. REFERENCE 1 (bases 1 to 4507) AUTHORS Appels,R., Moran,L.B. and Gustafson,J.P. TITLE The structure of DNA from the rye (Secale cereale) NOR R1 locus and its behaviour in wheat backgrounds JOURNAL Can. J. Genet. Cytol. 28, 673-685 (1986) STANDARD simple staff_entry FEATURES Location/Qualifiers rRNA <1..1305 /note="26S rRNA (3' end put.)" rRNA 4246..>4507 /note="18S rRNA" BASE COUNT 1132 a 1192 c 1228 g 955 t ORIGIN BASE COUNT 368 a 386 c 407 g 339 t 7762 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 --|~(~~~)~ |~~~~-(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~-~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~-------- --------~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~------ -~~~~~~~-- -----~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~(~-~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~]~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 3361 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ --(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~-|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~--~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~-- ~~~~~~~--~ 3961 ~|~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~(~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~-- -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~)~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ (~~~~~~~~) ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~~~) ~~~~~~~|~~ 5161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~)~~~~~~ 5221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5341 ~~~~~~~~~( ~~~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5401 ~~~~~~~~~~ ~<~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5521 ~>~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5581 ~|~~~~~~~~ ~~~(~~~~~~ )~~|~~~~~~ ~~~~~(~~~~ ~)~~~~~~~| ~~~~~~||~~ 5641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 5701 ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)<~ ~~~~~~~~~~ ~~~~~~~~~~ 5761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5821 ~~~~~~~~~~ ~~~-~~~~~( ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 5941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~----- (~~~~~)~~~ ~~--~~~~~~ ~~~~~~~~~~ 6541 ~~~~~~~~~~ ~~~~~~~~~~ g---a>---- -------CUC AGAACU|G(- --GUA)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAACAU UGCG|A--UG G|UCC(---- 6661 ucgc)GGA-- ---------- --U-GCUGAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU GUCUACUAUC 6901 CA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCG -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUCUU G|AGCUUGAC UCU-|AGUCC G---ACU-UU |GUGAAAUGA CUUGAGAGGU 7021 GUAGGAUAAG UGGGAUCcc- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -uuac)---- 7141 -------ggG C-GCAAGUGA AA-UACCACU |ACUUUUAA- -CGUUA-UUU UACUUAu--- 7201 ------(--- --)------| --a GACAU-UGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAAAGAUA AC-)GCAG-G U|G|U|CCU- AAGAU-GAGC |UCAAC-GAG 7621 -A(ACA---- GAAA)UCUCG UGUGGA|AC( A|A--AAGG) GUAAAAG-CU C-GUUUGAUU 7681 -CUGAUUU(c c--aguac-- )GAAUACGAA CCGU(-GAAA )GCGUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -AuC-UUC(- -GGAG-U--U U---)----- ---------- 7861 -----GAA|G CUAGAG-gug uc|aGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GA-)AUUCA CCAA-GUGU| UGGAU(UGUU C)ACCCACCA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- --------gG UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-C<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->---aG UG-UC-GC-G AUAGUAAUUC AACC(UAGUA 8281 C(GAGA)GGA AC-)CGUUGA U|UCACACAA UUGGUCAUCG CGC|-UUGGU U(GAAA)AGC 8341 CAGUGGCGCG A-ACGUACC- GU-GUGC--C GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCA-A GCUA--g-ca uGCG--ACGC C<----ugcg cccgccgc-c cgcc--ccga 8461 cccacguuag --gggc(gcu u-)gccc-ga agggcccgug cc--auuggc uaa----gcc 8521 -gguccggc( cgacgu)gc- cgcggcc-gc -cgccuc--g aa-gcucccu ucccaacgg- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------g cgguggg--> --|------( ---)------ 8701 ---cugaauc |cuuug(-ca gacga)cu-u aaaua---cg c-g|acgggg cauuguaagu 8761 gg-cagagug gc----(cuu -gcu------ ---------- ---------- ---------- 8821 ----)----g ccacgauc-c ac-|ugagau c|cagc-ccc a--ugu-c-g cac-gga-uu 8881 cgu--|---- ------|ccc ucccccacac uucuccuuca uugacuuagg uuccgaugcc 8941 gccgccaaau uccacacggc uaaggcaaac gacuuaaaua cguaaguugc auguagcgac 9001 uaacucaucg acgagccacg uaugcguaca uggacccgua cacggaccau gaacggcccu 9061 augggcacac gggaacaaag ugcccgucgg uagcggaacu gggcgu~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS D.winteri 9262 bp RNA RNA 28-JAN-1997 DEFINITION Drimys winteri (Winteraceae); . ACCESSION AF036491 KEYWORDS . SOURCE Drimys winteri (Winteraceae). ORGANISM Drimys winteri (Winteraceae). REFERENCE 1 (bases 1 to 3378) AUTHORS Doug and Pam Soltis JOURNAL Mol. Biol. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 3378) AUTHORS Kuzoff,R.K., Sweere,J.A., Soltis,D.E., Soltis,P.S. and Zimmer,E.A. TITLE Direct Submission JOURNAL Submitted (03-DEC-1997) Botany, Washington State University, 324 Science Hall, Pullman, WA 99164-4238, USA STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF036491 BASE COUNT 796 a 808 c 1059 g 715 t 5884 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~cccc aggucagg-c gGG----GCC 481 AC|CCGCUGA -A--UU|UA( AGCA)UA-UC AAUAAG-C-G G-AGGAGA-- --AGAAACU( 541 UAC-A)AG-G AU|UCCCCUA GU---AAC(G GCGA)GCG-A A-----CCGG GAUC------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------gcuu gagaaucgca 781 uggc--(uau g--)---c-c au-ucgaauu guagucugu- agaagcgucc uca------- 841 -----gcg-- ---------- ---------- ---------- ---------- ac-gg-accg 901 ggcc-caa-- --g-ucc-c( c-(uggaag- )g)ggg-u-- ---------- --------GC 961 --|C(AGA)G |AGGG-(UGA GAGC)-CCCG UC|--g-ugc ucggacccug u-----cgca 1021 ccac------ -gaggugc-u gucggu---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GUU(----UG 1141 GGAA)UGCAG CCCAAA---- uuGGGC-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUC-- ---------- ---------- ---------- )CGU-CCAAG GCU----AAA 1381 UA-------- ---------- UGGGC-GAGA GACCGAUAGU GAAC-AAGUA CC(GCGA)G- 1441 G-GAAAGAUG -AAA-AGGAC UUU(ga-aa- )AGAG-AGUC A-AAGAGUGC U-UGAAAU-U 1501 GUCGG-GAG< gg---aagcg aauggggg-c c--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ----ggcgau gcgucucggu cgg--augcg 2221 gaacggu(gu agu)gccgg- ucugccgcu- -cgacucggg guguggacug uugcg|gguu 2281 gugcc-ggcg gccuaagcc- -cgggcgg-- ---------- -----(auga u)-------- 2341 ---------- -cccgcccgu ggggagaugu ug-ccgg-cg cgaccggggg ggauagcgua 2401 c---gcc(uc ac-)ggc--- guguc(cuug c)ggcacuc- gugcgcucua g--------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 gcaa-cgg-- --------cc agu-gugc-- cccccauucg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UGACAUGUGU GCGAGUCa-a cgggc----( -----guaua 2641 aa)------- ---------- ---a-cccg- ---------- u-aaGGCGCA AG(GAAG)CU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------uug gugggau-cc c--------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ---auuguc- ----)----- ---------- -------ggg cugcaccacc 3061 g--------- ---------- ---------- ---------- -------acc ga-ccu-aga 3121 uc-(--uucu -)-gagaa-- gggu-ucgag u]-------- ---------G UCAGCAUGC- 3181 -CUG-UCGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AG|C-GGGGC AAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC CCG-CA---G CG-AUACUGA (CGUGCAAA) 3301 UCG-U-UCGU CUGACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UAGA -GCU--c|-- -|-gug---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------gg 3661 ugaguUCUAU -C|AGG--UA AA-GCCAAUG AUUAGAGGC- -----AUCGG GGGC--(gca 3721 a-c)--GCCC U-CGA-|CCU AUUC-UCAAA CUUUA-AAUA |GGUAGGacg -gcacggcu( 3781 gcuuugcug) agccgugc-c acga------ ---------- ---------- ---------- 3841 ---------- ---------- ----AAUcga g|AG-CUCCA -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- GAAGCCG--- GGUUACG--G 3961 U|GCCC-AAC U-G--UG-CG CUAACcua-- --------ga acccac---- -AAAGGGUGU 4021 U--GGUCGAU UAAGACA-GC AGGACGGUGG UC(AUGG-AA GUC)GAAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-CGA AAA--UGGAU 4141 G--GCG-CU- GAAGCGCGC| G|-------- --ACCCAU-- --ACCCGGC| (- -----)ugcc ucgau-gAGU AGGA------ 4441 --GGG|-CG- CG-GU-GG-- --------C- -C-G-Cug-- u------AAA ACCU-----U 4501 G-GGC(GUAA -)GCCUGGG- CGG|A-GCG| G--CCAUCG- GUGC-GGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GGCCGAAGA G-GGG|AAAG GUU|CCAUGU GA-ACG(-GC ACU)UG|CAC 4681 AUGGGUUAGU |-CGA-UCCU AAGA------ -------<-g acgggg(-ga ag)ccc--gu 4741 c--agauag- --cgug---- ---------- ---------- (cauca---) ---------- 4801 ---------c gcgagcu--- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA AGGGA-AU-C GGG(UUAAAA UU-)CCUGA| -AC----cga gaugugg-cg 4981 gc[ua----- ---------- ---------- ---------- -----acg(- -guaa--)cg 5041 u--------- ---------- ---------- ---------- -----ua-g] gga-gucugg 5101 agac-----g ucg--gcggg gg-c-cucg- -GG-AAGA(G UUAUCUUU-) UCUGUU-|UA 5161 A-cagcuug- ---------- cuc|a----C CCUG--GAAA ---CGG(CUC AG-)CCGGA- 5221 GG-UA-GGG- ucuag----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----uggc-u gGA-----AG 5341 AGCAUCGCA( -cg-ucg-)C GUGGUGUC-c ggugcg---c ccccg---gc ggcC-CUUGA 5401 AAA-uccaga ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggacugaa-- ---------- ----ug-ccu -cuc-acg-- cu-cgGUCGU 5581 A|CU--CAUA ACC(GCAUCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| GGUCG-||A- 5641 UG-G--AACA AU-GUAG-GC A-AGGGAAGU CGGCAA-AAU -GGAUCCGUA AC(CUCG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- -(-----)---- -------CUC AGAACU|G(- --GUA)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--UG G|UCC(---- 6661 cugc)GGA-- ---------- --U-GCUCAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU GUCUACUAUC 6901 CA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCC G---ACU-UU |GUGAAAUGA CUUGAGAGGU 7021 GUAGGAUAAG UGGGAGCcgu ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -cucg)---- 7141 ------gcgG U-GCAAGUGA AA-UACCACU |ACUUUUAA- -CGUUA-UUU UACUUAu--- 7201 ---------- ---------| --a GACAU-UGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAAAGAUA AC-)GCAG-G U|G|U|CCU- AAGAU-GAGC |UCAAC-GAG 7621 -A(ACA---- GAAA)UCUCG UGUGGA|AC( A|A--AAGG) GUAAAAG-CU C-GUUUGAUU 7681 -CUGAUUU(c c--aguac-- )GAAUACGAA CCGU(-GAAA )GCGUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -acC-UUC(- -GGAA-U--U U---)----- ---------- 7861 -----GAA|G CUAGAG-gug uC|aGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GA-)AUUCA CCAA-GUGU| UGGAU(UGUU C)ACCCACCA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-U<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->---cG UG-CC-GC-G AUAGUAAUUC AACC(UAGUA 8281 C(GAGA)GGA AC-)CGUUGA U|UCACACAA UUGGUCAUCG CGC|-UUGGU U(GAAA)AGC 8341 CAGUGGCGCG A-AGCUACC- GU-GUGU--C GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCA-A GCUA--aaga agcg--gcgc c<----ugug cccgccgu-u uguuugcuga 8461 cccguaguag -gggcc(uuu c-)ggccccc augggccugu guc-guuggu gaa----gcc 8521 -cccgcggu( ggauga)gc- cguggugggc -cgccuu--g aa-gcguaau uccuaucga- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------a cggcggg--> --|------( ---)------ 8701 ---cagaauc |cuuug(-ga gacga)cu-u aaaua---cg c-g|acaggg uauuguaagu 8761 gg-cagagug gc----(cuu -gcu------ ---------- ---------- ---------- 8821 ----)----g ccacgauc-c ac-|uga~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS T.dubius 9262 bp RNA RNA 28-JAN-1997 DEFINITION Tragopogon dubius (Asteraceae); . ACCESSION AF036493 KEYWORDS . SOURCE Tragopogon dubius (Asteraceae). ORGANISM Tragopogon dubius (Asteraceae). REFERENCE 1 (bases 1 to 3365) AUTHORS Doug and Pam Soltis JOURNAL Mol. Biol. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 3365) AUTHORS Kuzoff,R.K., Sweere,J.A., Soltis,D.E., Soltis,P.S. and Zimmer,E.A. TITLE Direct Submission JOURNAL Submitted (03-DEC-1997) Botany, Washington State University, 324 Science Hall, Pullman, WA 99164-4238, USA STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF036493 BASE COUNT 787 a 837 c 1060 g 681 t 5897 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~cccc aggucagg-c gGG----ACU 481 AC|CCGCUGA -G--UU|UA( AGCA)UA-UC AAUAAG-C-G G-AGGAAA-- --AGAAACU( 541 UAC-A)AG-G AU|UCCCUUA GU---AAC(G GCGA)GCG-A A-----CCGG GAUC------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------gcuu gaaaaucgga 781 uggc--(ccu g--)---u-c gu-ccgaauu guagucugg- agaagcgucc uca------- 841 -----gcg-- ---------- ---------- ---------- ---------- gc-gg-accg 901 ggccccaa-- --g-ucc-c( c-(uggaag- )g)ggg-c-- ---------- --------GC 961 --|C(GGA)G |AGGG-(UGA GACC)-CCCG UC|--g-uac ccggacccug u-----cgca 1021 ccac------ -gaggcgc-u gucuuc---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GUU(----UG 1141 GGAA)UGCAC CCCCAA---- ucGGGC-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUC-- ---------- ---------- ---------- )CGU-CCAAG GCU----AAA 1381 UA-------- ---------- CUGGC-GUGA GACCGAUACC ACAC-AAGUA CC(GCGA)G- 1441 G-GAAAGAUG -AAA-AGGAC UUU(ga-aa- )AGAG-AGUC A-AAGAGUGC U-UGAAAU-U 1501 GUCGG-GAG< gg---aagcg aauggggg-c c--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ----ggcgau acgucccggu cgg--augug 2221 gagcggc(ga aa-)gccgg- uccgccaau- -cgacucggg gcguggaccg gugcg|gauu 2281 ggugc-ggcg gccaaagcc- -uggguug-- ---------- -----(uuga u)-------- 2341 ---------- --augccca- -uggagaugc cg-ucgc-gu cgauuguggu uggcagcacg 2401 c---gcc(gu cau)ggc--- gugc-(uucg -)-gcaccu- gcgugcuccc g--------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 gcac-cgg-- --------cc ugc-gggc-- acccuauucg >------GCC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UGACAUGUGU GCGAGUCa-a cgggu----( ------gagu 2641 aa)------- ---------- ---a-cccg- ---------- c-aaGGCGCA AG(GAAG)CU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------uug gcgggau-cc cc-------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----cucgu- ----)----- ---------- ------gggg -ugcaccgcc 3061 g--------- ---------- ---------- ---------- -------acc ga-ccu-uga 3121 uc-(--uucu -)-gagaa-- gggu-ucgag u]-------- ---------G UGAGCAUGC- 3181 -CUG-UCGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AG|C-GGGGC GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC CCG-CA---G CG-AUACUGA (CGUGCAAA) 3301 UCG-U-UCGU CUGACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC GUCUAGUAAC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGA -GCC--c|-- -|-gg----- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ------gugc 3661 g-aguUCUAU uC|GGG--UA AA-GCGAAUG AUUAGAGGC- -----AUCGG GGuc--(gca 3721 a-c)--GCCC U-CGA-|CCU AUUC-UCAAA CUUUA-AAUA |GGUAGGacg -guguggcu( 3781 gcuucguug) agccacgc-c augg------ ---------- ---------- ---------- 3841 ---------- ---------- ----AAUcga g|AG-CUCCA -AGU-GGACC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- GAAGCCG--- GGUUACG--G 3961 U|GCCA-AAC U-G--CG-CG CUAACcua-- --------ga acccac---- -AAAGGGUGU 4021 U--GGUCGAU UAAGACA-GC AGGACGGUGG UC(AUGG-AA GUC)GAAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-CGA AAA--UGGAU 4141 G--GCG-CU- UAAGCGCGC| G|-------- --ACCUAC-- --ACCCGGC| (- -----)ggcc ccgau-gAGU AGGA------ 4441 --GGG|-CG- CG-GC-GG-- --------U- -C-G-Cug-- c------AAA ACCU-----U 4501 G-GGC(GCGA -)GCCUGGg- CGG|A-GCG| G--CCGUCG- GUGC-GGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GGCCGAAGA G-GGG|AAAG GUU|CCAUGU GA-ACG(-GC ACU)UG|CAC 4681 AUGGGUUAGU |-CGA-UCCU AAGA------ -------<-g acgggg(-ga ag)ccc--gu 4741 c--agauag- --cgcgu--- ---------- ---------- (uuu-----) ---------- 4801 --------gc gcgagcu--- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA AGGGA-AU-C GGG(UUAAAA UU-)CCUGA| -AC----cgg gacgugg-cg 4981 gc[ug----- ---------- ---------- ---------- -----acg(- -gcaa--)cg 5041 u--------- ---------- ---------- ---------- -----ua-g] gga-guccgg 5101 agac-----g ucg--gcggg gg-c-cucg- -GG-AAGA(G UUAUCUUU-) UCUGUU-|UA 5161 A-cagccug- ---------- ccc|a----C CCUG--GAAA ---CGA(CUC AG-)UCGGA- 5221 GG-UA-GGG- uccag----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----cggc-u gGA-----AG 5341 AGCACCGCA( -cg-ucg-)C GCGGUGUC-c ggugcg---c ccccg---gc ggcC-CUUGA 5401 AAA-uccgga -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaccgag-- ---------- ----ug-ccu -ccc-acg-- cc-cgGUCGU 5581 A|CU--CAUA ACC(GCAUCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| GGUCG-||A- 5641 UG-G--AACA AU-GUAG-GC A-AGGGAAGU CGGCAA-AAU -GGAUCCGUA AC(CUCG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- -(-----)---- -------CUC AGAACU|G(- --GUA)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--UG G|UCC(---- 6661 cugc)GGA-- ---------- --UguCUAAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU GUCUACUAUC 6901 CA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCC G---ACU-UU |GUGAAAUGA CUUGAGAGGU 7021 GUAGUAUAAG UGGGAGCc-- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -cucg)---- 7141 --------gG C-gaaagUGA UA-UACCACU |ACUUUUAA- -CGUUA-UUU UACUUAu--- 7201 ---------- ---------| --a GACAU-UGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAAAGAUA AC-)GCAG-G U|G|U|CCU- AAGAU-GAGC |UCAAC-GAG 7621 -A(ACA---- GAAA)UCUCG UGUGGA|AC( A|G--AAGG) GUAAAAG-CU C-GUUUGAUU 7681 -CUGAUUU(c c--aguac-- )GAAUACGAA CCGU(-GAAA )GCGUGG|CC --UAA|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -acC-UUC(- -GGAA-U--U U---)----- ---------- 7861 -----GAA|G CUAGAG-gug uC|aGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GA-)AUUCA CCAA-GUGU| UGGAU(UGUU C)ACCCACCA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-U<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->---aG UG-UC-GC-A AUAGUAAUUC AACC(UAGUA 8281 C(GAGA)GGA AC-)CGUUGA U|UCGCACAA UUGGUCAUCG CGC|-UUGGU U(GAAA)AGC 8341 CAGUGGCGCG A-AGCUACC- GU-GCGC--U GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCG-G GCUA--g--a aGCG--ACGC g<----ugug cucgccgc-c uguuugccga 8461 ccagcagua- -ggggu(cuc g-)gcccc-c aaaggcacgu guc-guuggc caa----gcc 8521 -cgugcgau( ggacga)gu- cg-ugcgggc -cgccau--g aa-guacaau ucccaucaa- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------g cggcggg--> --|------( ---)------ 8701 ---uagaauc |cuuug(-ca gacga)cu-u aaaua---cg c-g|acgggg uauuguaagu 8761 gg-cagagug gc----(cuu -guu------ ---------- ---------- ---------- 8821 ----)----g ccacgauc-c ac-|uga~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS C.florida 9262 bp RNA RNA 13-MAY-1993 DEFINITION Cornus florida.; 26S ribosomal RNA. ACCESSION L16519 KEYWORDS 26S ribosomal RNA. SOURCE Cornus florida. ORGANISM Cornus florida. REFERENCE 1 (bases 1 to 664) AUTHORS Conran,J.G. and Dowd,J. JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: L16519 NCBI gi: 289978 BASE COUNT 132 a 157 c 221 g 102 t 8650 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ nnnnnaaaga u-ggug-aag uaug-ccug- ag|c-ggggc gaagccagag 3241 (gaaa----- -----)nunu ggu-ggaggc ncg-aa---g cg-auacuga (cgugcaaa) 3301 ucg-u-ucgu cugacuuggg uauaggg--g c--------- ---------- ---(gaaa-- 3361 --g)a---cu aau-cgaacc aucuaguagn nnnnnnnnnn nnnn------ ---------- 3421 ---------- -------|-- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ------|--- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- -|-------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- --|-(---)- 4081 |--------- -------|-- ---------- ---------- ---|------ ---------- 4141 ---------- ---------| ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 -----|---- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------| ---------- ---------- ------|--- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ---------- 4921 ---------- ---------- ---------- -------ga| -ac----cgg gacgugg-cg 4981 gu[ug----- ---------- ---------- ---------- -----acg(- -gnna--)cg 5041 u--------- ---------- ---------- ---------- -----ua-g] gna-guccgg 5101 agac-----g cug--gcggn gg-c-cunu- -gg-aaga(g unaucuuu-) ucugcu-|ya 5161 a-cagccug- ---------- ccc|a----c ccug--gaaa ---cgg(cuc ag-)ccgga- 5221 gg-ua-ggg- accag----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----cggc-u gga-----ag 5341 agcaccgca( -cg-ucg-)c gugguguc-c ggugnn---n cccug---gc ggcc-cnuga 5401 aaa-uccgga ---------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ---------- ggaccgag-- ---------- ----ug-ccn uccc-acn-- cc-cggucnn 5581 n|-------- ---------- ---------- ---------- ---------- ---------- 5641 ---------- nn-nnnn-nn A-AGGGAAGU CGGCAA-AAY -GGAUCCgUA AC(UUCG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- -(-----)---- -------cuc agaacu|g(- --gua)cgga 6601 caaggggaau c|-cgacugu uu(aauua)a aacaaagcau ugcg|a--ug g|ucc(---- 6661 ungc)gga-- ---------- --u-~~~~~~ ~~~~~~~~-- ~~~~~~~~~~ ~~~~~~~~~~ 6721 ~~-~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ (~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 6841 ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ 6901 ~~|~~~~~~~ ~|~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~-~~~-~~~ ~~~~~~~~~~ 6961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~-|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~------- ---~~~~~~~ ~~~~~~~~~~ 7081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~--~~- -~~~~~~~~~ 7141 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ |~~~~~~~~~ -~~~~~-~~~ ~~~~~~~~~~ 7201 ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 7261 ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7561 ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~--~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 7681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~|~~~- 7741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 7801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~-~~~~ ~~~-~----- ---------- 7861 -----~~~|~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~|~ ~~~|~~~~~~ ~~|~~~~~~~ 7921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~|~~~~~ 7981 ~~~~~~~|~~ ~-~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --------~~ ~~~~~~~~~~ ~~~~~~~~~~ 8101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ 8281 ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ 8401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 8461 ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8641 ~~~~~~~~~~ ~~~~~~-~~~ ~-~~~~-~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ 8701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~~~~~~~ ~~~~~~~~~- ~~~|-~~~~~ ~|~~~~~~~~ ~--~~~-~~~ ~~~-~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS L.esculent 9262 bp RNA RNA ~?~???? DEFINITION Lycopersicon esculentum subsp. was Solanum lycopersicum. ACCESSION No information KEYWORDS No information. SOURCE Lycopersicon esculentum subsp. was Solanum lycopersicum. ORGANISM Lycopersicon esculentum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X13557 + X52265 ID LE17S25S standard; DNA; PLN; 1131 BP. AC X52265; X07889; DE Tomato 17S-25S ribosomal DNA spacer KW 17S ribosomal RNA; 25S ribosomal RNA; 5.8S ribosomal RNA; OS Lycopersicon esculentum OC Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; OC Asteridae; Solanales; Solanaceae. BASE COUNT 825 a 894 c 1111 g 710 t 5722 others ORIGIN 1 |--------- ---------- ---------- ----CGACUC UCGGCAACGG AUA|UCUCGG 61 |CUCUCGC|A U|-CGAUGAA GAA|CGUA(- -GCGA-AA)U |GC-GAUACU UG-gugu|[- 121 gaauugcaga aucccgugaa c--------- ---------- ---------- -------]-- 181 ---------- ---------- ---caucg|A GUCUUU-GAA Cgc-(aaguu )-g-c|gccc 241 gaa------g c(-------- ---------- ---------- -----cauu- ug-)gc---- 301 --cg-agggc ---acgucug -c-cu-gggc guca--(--- ---cg----/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------g )--cgacccc aggucagg-c gGG----AUU 481 AC|CCGCUGA -G--UU|UA( AGCA)UA-UC AAUAAG-C-G G-AGGAAA-- --AGAAACU( 541 UAC-A)AG-G AU|UCCCCUA GU---AAC(G GCGA)GCG-A A-----CCGG GAAC------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------gccu uagaaucggg 781 cggc--(ucc ---)---guc gu-ccgaauu guagucugg- agaagcgucc uca------- 841 -----gcg-- ---------- ---------- ---------- ---------- gc-gg-accg 901 ggcc-caa-- --g-ucc-c( u-(-ggaa-- )g)ggg-c-- ---------- --------GC 961 --|C(GGA)G |AGGG-(UGA GAGC)-CCCG UC|--g-ugc ccggacccug u-----cgca 1021 ccac------ -gaggcgc-u gucuac---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GUU(----UG 1141 GGAA)UGCAG CCCAAA---- ucGGGC-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUGAAUUC-- ---------- ---------- ---------- )CGU-CCAAG GCU----AAA 1381 UA-------- ---------- CUGGC-GAGA GACCGAUAGC GAAC-AAGUA CC(GCGA)G- 1441 G-GAAAGAUG -AAA-AGGAC UUU(ga-aa- )AGAG-AGUC A-AAGAGUGC U-UGAAAU-U 1501 GUCGG-GAG< gg---aagcg gauggggg-c c--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ----ggcgau gcgccccggu cgg--augug 2221 gaacggc(ga cga)gccgg- uccgccgau- -cagcucggg gcguggacca gcgug|gauu 2281 ggggg-ggcg gccaaagcc- -cgggcuc-- ---------- -----(ucga u)-------- 2341 ---------- --acgcccg- -ugga-acgc cg-ucuc-cc cgauugugga aggcagcgcg 2401 c---gcc(uc c--)ggc--- gugc-(uucg -)-gcaucu- gcgcgcuccg g--------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 acgc-ugg-- --------cc ugu-gggc-- uccccauucg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UGACAUGUGU GCGAGUCa-a cgggc----( ------gagu 2641 aa)------- ---------- ---a-cccg- ---------- u-aaGGCGUA AG(GAAG)CU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------uug gugggau-cc c--------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----cuga-- ----)----- ---------- -------ggg -ugcaccgcc 3061 g--------- ---------- ---------- ---------- -------acc ga-ccu-uga 3121 uc-(--uucu -)-gagaa-- gggu-ucgag u]-------- ---------G UGAGCAUAC- 3181 -CUG-UCGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AG|C--GGGC GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC CCG-CA---G CG-AUACUGA (CGUGCAAA) 3301 UCG-U-UCGU CUGACUU-GG UAUAGGG--- C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC GUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGA -GCU--c|-- -|-gcg---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- -------ugc 3661 g-aguUCUAU -C|GGG--UA AA-GCCAAUG AUUAGAGGC- -----CUCGG G-GC--(gca 3721 a-c)--GCCC U-CGA-|CCU AUUCUUCAAA CUUUA-AAUA |GGUAGGacg -gcgcggcu( 3781 gcuuuguug) agccgcgc-c acgg------ ---------- ---------- ---------- 3841 ---------- ---------- ----AAUcaa g|AG-CUCCA -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- GAAGCCG--- GGUUACG--G 3961 U|GCCA-AAC U-G--CG-CG CUAACcua-- --------ga ucccac---- -AAAGGGUGU 4021 U--GGUCGAU UAAGACA-GC AGGACGGUGG UC(AUGG-AA GUC)GAAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-CGA AAA--UGGAU 4141 G--GCG-CU- UAAGCGCGC| G|-------- --ACCUAC-- --ACCCGGC| (- -----)ggcc ccgau-gAGU AGGA------ 4441 --GGG|-CG- CG-GC-GG-- --------U- -C-G-CUg-- c------AAA ACCU-----U 4501 G-GGC(GCGA -)GCCUGGG- CGG|A-GCG| G--CCGUCG- GUGU-AGA-U CUUGGU|GG- 4561 UAGUAGC-AA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GGCCGAAGA G-GG-|AAAG GUU|-CAUGU GA-ACG(-GC ACU)UG|CAC 4681 AUGGGUUAGU |-CGA-UCCU AAGG------ -------<-g uc-ggg(-ga ac)ccc--ga 4741 c--agaua-- --gcgcg--- ---------- ---------- (uuu-----) ---------- 4801 --------cg cgcguacu-- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----CC-GAA AGGGA-AU-C GGG(UUAAAA UU-)CCUGA| -AC----cgg gacgugg-cg 4981 gu[ug----- ---------- ---------- ---------- -----acg(- -gcaa--)cg 5041 u--------- ---------- ---------- ---------- -----ua-g] gaa-guccgg 5101 agac-----g ucg--gcggg ag-c-cucg- -GG-AAGA(G UUAUCUUU-) UCUGUU-|UA 5161 A-cagccug- ---------- ccc|a----C CCUG--GAAU ---CGG(CUC AG-)CCGGA- 5221 GG-UA-GGG- uccag----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----cggc-u gGA-----AG 5341 AGCACCGCA( -cggucg-)C GUGGUGUC-c ggugcg---c ucccg---gc ggcC-CUUGA 5401 AAAuuccgga -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaccgaa-- ---------- ----ug-ccg uucc-acg-- cc-cggUCGU 5581 A|CU--CAUA ACC(GCAUCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| GGUCG-||A- 5641 UG-G--AACA AU-GUAG-GC A-AGGGAAGU CGGCAA-AAU -GGAUCCGUA AC(UUCG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- -(-----)---- -------CUC AGAACU|G(- --GUA)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--UG G|UCC(---- 6661 caac)GGA-- ---------- --U-GUUUAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---aguga-- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU GUCUACUAUC 6901 CA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCC G---ACU-UU |GUGAAAUGA CUUGAGAGGU 7021 GUAGUAUAAG UGGGAGCC-- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -GAAA)---- 7141 --------GG C-GAAAGUGA AA-UACCACU |ACUUUUAA- -CGUUA-UUU UACUUAu--- 7201 ---------- ---------| --a GACAU--GUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAAAGAUA AC-)GCAG-G U|G|U|CCU- AAGAU-GAGC |UCAACCGAG 7621 -A(ACGagac GAAA)UCUCG UGUGGA|AC( A|G--AAGG) GUAAAAGcCU CcGUUUGAUU 7681 -CUGAUUU(c c-gaguac-- )GAAUACGAA CCGU(-GAAA )GCGUGG|CC -UUAA|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -ACC-UUC(- -GGAA-U--U C---)----- ---------- 7861 -----GAA|G CUAGAG-gug uC|aGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GA-)AUUCA CCAA-GUGU| UGGAU(UGUU C)ACCCACCA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-c<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->---aG UG-UC-GC-A AUAGUAAUUC AACC(UAGUA 8281 C(GAGA)GGA AC-)CGUUGA U|UCACACAA UUGGCCAUCG CGC|-UUGGU U(GAAA)AGC 8341 CAGUGGCGCG a-AGCUACC- GU-GUGC--U GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCG-G GCUA--g--a aGCG--ACGC a<----ugcg cccgccgu-c cgcuugccga 8461 cccgcagua- -ggggc(cuu --)gcccg-- aagggcacgu guc-guuggc uaa----guc 8521 -gccgcgac- ggaag----- cg--gucgac -cgccuu--g aa-guacaau uuccaucga- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------g cggcggg--> --|------( ---)------ 8701 ---uagaauc |cuuug(-ca gacga)cu-u aaaua---cg c-g|acgggg uauuguaagu 8761 gg-cagagug gc----(cuu -gcu------ ---------- ---------- ---------- 8821 ----)----g ccacgauc-c ac-|ugagau u|cagc-ccu u--ugu-c-g cuc-cga-uu 8881 cgu--|---- ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Plu.auricu 9262 bp RNA RNA 14-DEC-1997 DEFINITION Plumbago auriculata. subsp. Unpublished version from Doug and Pam Soltis, circa Oct.1997; . ACCESSION AF036492 KEYWORDS . SOURCE Plumbago auriculata. subsp. Unpublished version from Doug and Pam Soltis, circa Oct.1997. ORGANISM Plumbago auriculata. REFERENCE 1 (bases 1 to 3354) AUTHORS Kuzoff,R.K., Sweere,J.A., Soltis,D.E., Soltis,P.S. and Zimmer Kuzoff,R.K., Sweere,J.A., Soltis,D.E., Soltis,P.S. and Zimmer,E.A. TITLE The Phylogenetic Potential of Entire 26S rDNA Sequences in Plants JOURNAL Mol. Biol. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 3354) AUTHORS Kuzoff,R.K., Sweere,J.A., Soltis,D.E., Soltis,P.S. and Zimmer,E.A. TITLE Direct Submission JOURNAL Submitted (03-DEC-1997) Botany, Washington State University, 324 Science Hall, Pullman, WA 99164-4238, USA STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF036492 Unpublished version: CCUACUGAUGAUmGUGUCGCAAUGGU Published version: CCUACUGAUGAU-GUGUCGCAAUGGU (The inserted M appeared at position 2630 in E.coli and 2992 in the unpublished sequence.) BASE COUNT 782 a 857 c 1069 g 646 t 5908 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~cccc aggucagg-c gGG----GCU 481 AC|CCGCUGA -G--UU|UA( AGCA)UA-UC AAUAAG-C-G G-AGGAAA-- --AGAAACU( 541 UAC-A)AG-G AU|UCCCCUA GU---AAC(G GCGA)GCG-A A-----CCGG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------gcuu uagaaucagg 781 cggc--(cuc g--)---c-c uc-cugaauu guagucugg- agaagcgucc ucc------- 841 -----gcg-- ---------- ---------- ---------- ---------- ac-gg-accg 901 ggcc-caa-- --g-ucc-c( c-(uggaag- )g)ggg-c-- ---------- --------GC 961 --|C(GGA)G |AGGG-(UGA GAGC)-CCCG UC|--g-ugc ccggacccug u-----cgcu 1021 ccac------ -gaggcgc-u gucggc---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GUU(----UG 1141 GGAA)UGCAG CCCUAA---- gcGGGC-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUC-- ---------- ---------- ---------- )CGU-CCAAG GCU----AAA 1381 UA-------- ---------- CGGGC-GAGA GACCGAUAGC GAAC-AAGUA CC(ACGA)G- 1441 G-GAAAGAUG -AAA-AGGAC UUU(ga-aa- )AGAG-AGUC A-AAGAGUGC U-UGAAAU-U 1501 GUCGG-GAG< gg---aagcg gauggggg-a u--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ----ggcgau gcgccccggu cgg--augug 2221 gaacggu(ca caa)gccgg- uccgccgau- -cggcucggg gcguggaccg gcgcg|gauu 2281 gacgg-ggcg gccgaagcc- -cgggcgg-- ---------- -----(aaga u)-------- 2341 ---------- -aaugcccg- --cggaacgu cg-uccc-gu cgaucgugga ucacagcgcg 2401 c---gc-(cc uc-)-gc--- ggcg-(aca- -)-aacca-- gcgcgcucgu g--------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 gcgc-cgg-- --------cc ugc-gggc-- uccccauucg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UGACAUGUGU GCGAGUCa-u cgggc----( ------gagu 2641 aa)------- ---------- ---a-cccg- ---------- u-acGGCGCA AG(GAAG)CU 2701 AA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------uug gcgggau-cc c--------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----cucgc- ----)----- ---------- -------ggg cugcaccgcc 3061 g--------- ---------- ---------- ---------- -------acc ga-ccu-uga 3121 uc-(--uucu -)-gagaa-- gggu-ucgag u]-------- ---------G AGAGCAUAC- 3181 -CUG-UCGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AG|C-GGGGC GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC CCG-AA---G CG-AUACUGA (CGUGCAAA) 3301 UCG-U-UCGU CUGACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC GUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGA -GCU--c|-- -|-aca---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------cg 3661 cgaguUCUAU -C|GGG--UA AA-GCCAAUG AUUAGAGGC- -----AUCGG GGGC--(gca 3721 a-c)--GCCC U-CGA-|CCU AUUC-UCAAA CUUUA-AAUA |GGUAGGacg -gcgcggcu( 3781 gcuucguug) agccgcgc-c acgg------ ---------- ---------- ---------- 3841 ---------- ---------- ----AAUcga g|AG-CUCCA -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- GAAGCCG--- GGUUACG--G 3961 U|GCCC-AAC U-G--CG-CG CUAACcua-- --------ga ucccac---- -AAAGGGUGU 4021 U--GGUCGAU UAAGACA-GC AGGACGGUGG UC(AUGG-AA GUC)GAAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-CGA AAA--UGGAU 4141 G--GCG-CU- UAAGCGCGC| G|-------- --ACCUAU-- --ACCCGGC| (- -----)ggcc ccgau-gAGU AGGA------ 4441 --GGG|-CG- CG-GC-GG-- --------U- -C-G-Cug-- c------AAA ACCU-----G 4501 U-GGC(GCGA -)GCCAGGG- CGG|A-GCG| G--CCGUCG- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GGCCGAAGA G-GGG|AAAG GUU|CCAUGU GA-ACG(-GC ACU)UG|CAC 4681 AUGGGUUAGU |-CGA-UCCU AAGA------ -------<-g ucgggg(-ga ag)ccc--gu 4741 c--cgauag- --cgcgu--- ---------- ---------- (caa-----) ---------- 4801 --------gc gcgagcu--- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA AGGGA-AU-C GGG(UUAAAA UU-)CCUGA| -AC----cgg gacaugg-cg 4981 gu[ug----- ---------- ---------- ---------- -----acg(- -gcaa--)cg 5041 u--------- ---------- ---------- ---------- -----ua-g] gaa-guccgg 5101 agac-----g ucg--gcggg gg-c-cucg- -GG-AAGA(G UUAUCUUU-) UCUGUU-|UA 5161 A-cagccug- ---------- ccc|a----C CCUG--GAAA ---CGG(CUC AG-)CCGGA- 5221 GG-UA-GGG- uccag----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----cggc-u gGA-----AG 5341 AGCACCGCA( -cg-ucg-)C GUGGUGUC-c ggugcg---c ccccg---gc ggcC-CUUGA 5401 AAA-uccgga -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaccgag-- ---------- ----ug-ccg -acc-aug-- cc-cgCUCGU 5581 A|CU--CAUA ACC(GCAUCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| GGUCG-||A- 5641 UG-G--AACA AU-GUAG-GC A-AGGGAAGU CGGCAA-AAU -GGAUCCGUA AC(CUCG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- -(-----)---- -------CUC AGAACU|G(- --GUA)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--UG G|UCC(---- 6661 cugc)GGA-- ---------- --U-GCUAAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU GUCUACUAUC 6901 CA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCC G---ACU-UU |GUGAAAUGA CUUGAGAGGU 7021 GUAGGAUAAG UGGGAGCc-- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -cucg)---- 7141 --------gG C-gaAAGUGA AA-UACCACU |ACUUUUAA- -CGUUA-UUU UACUUAc--- 7201 ---------- ---------| --g GACAU-UGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAAAGAUA AC-)GCAG-G U|G|U|CCU- AAGAU-GAGC |UCAAC-GAG 7621 -A(ACA---- GAAA)UCUCG UGUGGA|AC( A|G--AAGG) GUAAAAG-CU C-GUUUGAUU 7681 -CUGAUUU(c c--aguac-- )GAAUACGAA CCGU(-GAAA )GCGUGG|CC --UAA|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -acC-UUC(- -GGAA-U--U U---)----- ---------- 7861 -----GAA|G CUAGAG-GUG UC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GA-)AUUCA CCAA-GUGU| UGGAU(UGUU C)ACCCACCA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-U<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->----G UG-UC-GC-A AUGGUAAUUC AACC(UAGUA 8281 C(GAGA)GGA AC-)CGUUGA U|UCGCACAA UUGGUCAUCG CGC|-UUGGU U(GAAA)AGC 8341 CAGUGGCGCG A-AGCUACC- GU-GCGC--U GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCG-G GCCA--g--a aGCG--ACGC a<----ugcg cccgccgc-u cgauugccga 8461 ccugcagua- -ggggc(uuc g-)gcccc-c aagggcacgu guc-gugggc uca----gcc 8521 -cgcgcguc( ggaugc)gc- cg-cgcgggc -cgcccu--g aa-guacaau uuccuccgg- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------g cggcggg--> --|------( ---)------ 8701 ---uugaauc |cuuug(-ca gacga)cu-u aaaua---cg c-g|acgggg uauuguaagu 8761 gg-cagagug gc----(cuu -gcu------ ---------- ---------- ---------- 8821 ----)----g ccacgauc-c ac-|uga~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS A.thalia.1 9262 bp RNA RNA 11-JAN-191 DEFINITION Arabidopsis thaliana. ACCESSION No information KEYWORDS No information. SOURCE Arabidopsis thaliana. ORGANISM Arabidopsis thaliana. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X52320 ID AT3RRNA standard; DNA; PLN; 4310 BP. AC X52320; DE Arabidopsis thaliana genes for 5.8S rRNA and 25S rRNA with DE 18S rRNA fragment KW 25S ribosomal RNA; 5.8S ribosomal RNA; ribosomal RNA. OS Arabidopsis thaliana OC Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; OC Dilleniidae; Capparales; Brassicaceae. FT RRNA <1 228 18S rRNA 3' region FT SITE 229 496 ITS1 (intrageneic spacer) FT RRNA 497 660 5.8S rRNA FT SITE 661 847 ITS2 (intragenic spacer) FT RRNA 848 4222 25S rRNA FT SITE 4223 4310 IGR 5' region BASE COUNT 841 a 867 c 1102 g 729 t 5723 others ORIGIN 1 |--------- ---------- ---------- aaaaCGACUC UCGGCAACGG AUA|UCUCGG 61 |CUCUCGC|A U|-CGAUGAA GAA|CGUA(- -GCGA-AA)U |GC-GAUACU UG-gugu|[- 121 gaauugcaga aucccgugaa c--------- ---------- ---------- -------]-- 181 ---------- ---------- ---caucg|A GUCUUU-GAA CGC-(aaguu )-g-c|gccc 241 caa------g c(-------- ---------- ---------- -----cuuc- ug-)gc---- 301 --cg-agggc ---acgucug -c-cu-gggu gucac-(--- ---aa----/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------g )--cgacccc aggucagg-c gGG----AUU 481 AC|CCGCUGA -G--UU|UA( AGCA)UA-UC AAUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-A)AG-G AU|UCCCUUA GU---AAC(G GCGA)GCG-A A-----CCGG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------gcuu gaaaaucgga 781 cguc--(uuc g--)---g-c gu-ucgaauu guagucugg- agaagcgucc uca------- 841 -----gcg-- ---------- ---------- ---------- ---------- ac-gg-accg 901 ggcc-uaa-- --g-uuc-c( c-(uggaaa- )g)ggg-c-- ---------- --------GC 961 --|C(AGA)G |AGGG-(UGA GAGC)-CC-G UC|--g-ugc ccggacccug u-----cgca 1021 ccac------ -gaggcgc-u gucuac---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GUU(----UG 1141 GGAA)UGCAG CCCCAA---- ucGGGC-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUC-- ---------- ---------- ---------- )CGU-CCAAG GCU----AAA 1381 UA-------- ---------- CGGGC-GAGA GACCGAUAGC GAAC-AAGUA CC(GCGA)G- 1441 G-UAAAGAUG -AAA-AGGAC UUU(ga-aa- )AGAG-AGUC A-AAGAGUGC U-UGAAAU-U 1501 GUCGG-GAG< gg---aagcg gauggggg-c c--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ----ggcgau gcguccuggu cgg--augcg 2221 gaacgga(gc aa-)uccgg- uccgccgau- -cgauucggg gcguggaccg acgcg|gauu 2281 acggu-ggcg gccuaagcc- -cgggcuu-- ---------- -----(uuga u)-------- 2341 ---------- --acgcuug- -uggagacgu cg-cugc-cg ugaucguggu cugcagcacg 2401 c---gcc(ua ac-)ggc--- gugc-(cucg -)-gcauca- gcgugcuccg g--------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 gcgu-cgg-- --------cc ugu-gggc-- uccccauucg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UGACAUGUGU GCGAGUCa-a cgggu----( ------gagu 2641 aa)------- ---------- ---a-cccg- ---------- u-aaGGCGCA AG(GAAG)CU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------uug gcgggau-cc ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----ucgcg- ----)----- ---------- --------gg -ugcaccgcc 3061 g--------- ---------- ---------- ---------- -------acc ga-ccu-uga 3121 uc-(--uucu -)-gagaa-- gggu-ucgag u]-------- ---------G UGAGCAUGC- 3181 -CUG-UCGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AG|C-GGGGU AAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAAGC CCG-CA---G CG-AUACUGA (CGUGCAAA) 3301 UCG-U-UCGU CUGACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGA -GCU--c|-- -|-gga---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------cg 3661 cgaguUCUAU -C|GGG--UA AA-GCCAAUG AUUAGAGGC- -----AUUGG GGGC--(gca 3721 a-c)--G-CC U-CGA-|CCU AUUC-UCAAA CUUUA-AAUA |GGUAGGacg -ugucggcu( 3781 gcuuuguug) agccguca-c acgg------ ---------- ---------- ---------- 3841 ---------- ---------- ----AAUcga g|AG-CUCCA -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- GAAGCCG--- GGUUACG--G 3961 U|GCCC-AAC U-G--CG-CG CUAACcua-- --------ga acccac---- -AAAGGGUGU 4021 U--GGUCGAU UAAGACA-GC AGGACGGUGG UC(AUGG-AA GUC)GAAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-CGA AAA--UGGAU 4141 G--GCG-CU- UAAGCGCG-| -|-------- --ACCUAU-- --ACCCGGC| (- -----)ggcc ucgau-gAGU AGGA------ 4441 --GGG|-CG- CG-GC-GG-- --------U- -C-G-Cug-- c------AAA ACCU-----A 4501 G-GGC(GCGA -)GGC---G- CGG|A-GCG| G--CCGUCG- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GGCCGAAGA G-GGG|AAAG GUU|CCAUGU GA-ACG(-GC ACU)UG|CAC 4681 AUGGGUUAGU |-CGA-UCCU AAGA------ -------<-g ucgggg(-ga aa)ccc--gu 4741 c--ugauag- --cgc----- ---------- ---------- (uuaa----) ---------- 4801 ---------- gcgaacu--- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA AGGGG-AU-C CGG(UUAAAA UU-)CCGGA| -AC----cgg gacgugg-cg 4981 gu[ug----- ---------- ---------- ---------- -----acg(- -gcaa--)cg 5041 u--------- ---------- ---------- ---------- -----ua-g] gga-guccgg 5101 agac-----g ucg--gcggg gg-c-cucg- -GG-AAGA(G UUAUCUUU-) UCUGUU-|UA 5161 A-cagccug- ---------- ccc|a----C CCUG--GAAA ---CGG(CUC AG-)CCGGA- 5221 GG-UA-GGG- uccag----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----cggc-u gGA-----AG 5341 AGCACCGCA( -cg-ucg-)C GUGGUGUC-c ggugcg---c ccccg---gg cgcC-CUUGA 5401 AAA-uccgga -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaccgag-- ---------- ----ug-ccg -cuc-acg-- cc-cggUCGU 5581 A|CU--CAUA ACC(GCAUCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| GGUCG-||A- 5641 UG-G--AACA AU-GUAG-GC A-AGGGAAGU CGGCAA-AAU -GGAUCCGUA AC(UUCG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- -(-----)---- -------CUC AGAACU|G(- --GUA)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--UG G|UCC(---- 6661 cugc)GGA-- ---------- --U-GCUAAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU GUCUACUAUC 6901 CA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCC G---ACU-UU |GUGAAAUGA CUUGAGAGGU 7021 GUAGGAUAAG UGGGAGC--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -UUCG)---- 7141 ---------G C-GCAAGUGA AA-UACCACU |ACUUUUAA- -CGUUA-UUU UACUUAc--- 7201 ---------- ---------| --g GACAU-UGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAAAGAUA AC-)GCAG-G U|G|U|CCU- AAGAU-GAGC |UCAAC-GAG 7621 -A(ACA---- GAAA)UCUCG UGUGGA|AC( A|A--AAGG) GUAAAAG-CU C-GUUUGAUU 7681 -CUGAUUU(u c--aguac-- )GAAUACGAA CCGU(-GAAA )GCGUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -a-C-UUC(- -GGAA-U--U U---)----- ---------- 7861 -----GAA|G CUAGAG-GUG uC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GA-)AUUCA CCAA-GUGU| UGGAU(UGUU C)ACCCACCA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGC-c<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->---cG CG-UC-GC-G AUAGUAAUUC AACC(UAGUA 8281 C(GAGA)GGA AC-)CGUUGA U|UCGCACAA UUGGUCAUCG CGC|-UUGGU U(GAAA)AGC 8341 CAGUGGCGCG a-AGCUACC- GU-GCGC--U GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCG-G GCUA--g--a aGCG--ACGC a<----ugcg cccgccgc-c cgauugccga 8461 cccucaguag --gagc(uua g-)gcuc--c aaaggcacgu guc-guuggc uaa----guc 8521 -cguucggc( ggaacg)gu- cg-uucggac -cgccuu--g aa-uuauaau uaccaccga- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------g cggcggg--> --|------( ---)------ 8701 ---uagaauc |cuuug(-ca gacga)cu-u aaaua---cg c-g|acgggg uauuguaagu 8761 gg-cagagug gc----(cuu -gcu------ ---------- ---------- ---------- 8821 ----)----g ccacgauc-c ac-|ugagau u|cagc-ccu u--ugu-c-g cua-aga-uu 8881 cga~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS A.thalia.2 9262 bp RNA RNA 11-JAN-191 DEFINITION Arabidopsis thaliana. ACCESSION No information KEYWORDS No information. SOURCE Arabidopsis thaliana. ORGANISM Arabidopsis thaliana. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X52322 last line of sequence is on next line caattctacacaagtgtttctacactaacaaagcaacagctccttaacgaattc ID ATRDNAF standard; DNA; PLN; 10014 BP. XX AC X52322; XX DT 01-AUG-1991 (Rel. 28, Created) DT 07-MAY-1992 (Rel. 31, Last updated, Version 4) XX DE A.thaliana rRNA repeat unit, most frequent IGR type XX KW 18S ribosomal RNA; 25S ribosomal RNA; 5.8S ribosomal RNA. XX OS Arabidopsis thaliana OC Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; OC Dilleniidae; Capparales; Brassicaceae. XX RN [1] RP 1-10014 RA Unfried I.; RT ; RL Submitted (25-APR-1990) on tape to the EMBL Data Library by: RL Unfried I., Institute of Botany , University of Vienna, Rennweg 14, RL A 1030 Vienna, Austria. XX CC *source: strain=Co10; CC *source: clone_library=EMBL3 part. Sau3AI digest; XX CC [1] assembled the sequence from x15550, x16077, x52637 and x52320 XX FH Key Location/Qualifiers FH FT promoter 963..1063 FT /note="put. spacer promoter" FT promoter 2202..2301 FT /note="put. gene promoter" FT rRNA 4129..5932 FT /product="18S rRNA" FT rRNA 6201..6364 FT /product="5.8S rRNA" FT rRNA 6552..9926 XX SQ Sequence 10014 BP; 2488 A; 2280 C; 2919 G; 2327 T; 0 other; BASE COUNT 841 a 867 c 1102 g 729 t 5723 others ORIGIN 1 |--------- ---------- ---------- aaaaCGACUC UCGGCAACGG AUA|UCUCGG 61 |CUCUCGC|A U|-CGAUGAA GAA|CGUA(- -GCGA-AA)U |GC-GAUACU UG-gugu|[- 121 gaauugcaga aucccgugaa c--------- ---------- ---------- -------]-- 181 ---------- ---------- ---caucg|A GUCUUU-GAA CGC-(aaguu )-g-c|gccc 241 caa------g c(-------- ---------- ---------- -----cuuc- ug-)gc---- 301 --cg-agggc ---acgucug -c-cu-gggu gucac-(--- ---aa----/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------g )--cgacccc aggucagg-c gGG----AUU 481 AC|CCGCUGA -G--UU|UA( AGCA)UA-UC AAUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-A)AG-G AU|UCCCUUA GU---AAC(G GCGA)GCG-A A-----CCGG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------gcuu gaaaaucgga 781 cguc--(uuc g--)---g-c gu-ucgaauu guagucugg- agaagcgucc uca------- 841 -----gcg-- ---------- ---------- ---------- ---------- ac-gg-accg 901 ggcc-uaa-- --g-uuc-c( c-(uggaaa- )g)ggg-c-- ---------- --------GC 961 --|C(AGA)G |AGGG-(UGA GAGC)-CC-G UC|--g-ugc ccggacccug u-----cgca 1021 ccac------ -gaggcgc-u gucuac---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GUU(----UG 1141 GGAA)UGCAG CCCCAA---- ucGGGC-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUC-- ---------- ---------- ---------- )CGU-CCAAG GCU----AAA 1381 UA-------- ---------- CGGGC-GAGA GACCGAUAGC GAAC-AAGUA CC(GCGA)G- 1441 G-UAAAGAUG -AAA-AGGAC UUU(ga-aa- )AGAG-AGUC A-AAGAGUGC U-UGAAAU-U 1501 GUCGG-GAG< gg---aagcg gauggggg-c c--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ----ggcgau gcguccuggu cgg--augcg 2221 gaacgga(gc aa-)uccgg- uccgccgau- -cgauucggg gcguggaccg acgcg|gauu 2281 acggu-ggcg gccuaagcc- -cgggcuu-- ---------- -----(uuga u)-------- 2341 ---------- --acgcuug- -uggagacgu cg-cugc-cg ugaucguggu cugcagcacg 2401 c---gcc(ua ac-)ggc--- gugc-(cucg -)-gcauca- gcgugcuccg g--------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 gcgu-cgg-- --------cc ugu-gggc-- uccccauucg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UGACAUGUGU GCGAGUCa-a cgggu----( ------gagu 2641 aa)------- ---------- ---a-cccg- ---------- u-aaGGCGCA AG(GAAG)CU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------uug gcgggau-cc ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----ucgcg- ----)----- ---------- --------gg -ugcaccgcc 3061 g--------- ---------- ---------- ---------- -------acc ga-ccu-uga 3121 uc-(--uucu -)-gagaa-- gggu-ucgag u]-------- ---------G UGAGCAUGC- 3181 -CUG-UCGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AG|C-GGGGU AAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAAGC CCG-CA---G CG-AUACUGA (CGUGCAAA) 3301 UCG-U-UCGU CUGACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGA -GCU--c|-- -|-gga---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------cg 3661 cgaguUCUAU -C|GGG--UA AA-GCCAAUG AUUAGAGGC- -----AUUGG GGGC--(gca 3721 a-c)--G-CC U-CGA-|CCU AUUC-UCAAA CUUUA-AAUA |GGUAGGacg -ugucggcu( 3781 gcuuuguug) agccguca-c acgg------ ---------- ---------- ---------- 3841 ---------- ---------- ----AAUcga g|AG-CUCCA -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- GAAGCCG--- GGUUACG--G 3961 U|GCCC-AAC U-G--CG-CG CUAACcua-- --------ga acccac---- -AAAGGGUGU 4021 U--GGUCGAU UAAGACA-GC AGGACGGUGG UC(AUGG-AA GUC)GAAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-CGA AAA--UGGAU 4141 G--GCG-CU- UAAGCGCG-| -|-------- --ACCUAU-- --ACCCGGC| (- -----)ggcc ucgau-gAGU AGGA------ 4441 --GGG|-CG- CG-GC-GG-- --------U- -C-G-Cug-- c------AAA ACCU-----A 4501 G-GGC(GCGA -)GGC---G- CGG|A-GCG| G--CCGUCG- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GGCCGAAGA G-GGG|AAAG GUU|CCAUGU GA-ACG(-GC ACU)UG|CAC 4681 AUGGGUUAGU |-CGA-UCCU AAGA------ -------<-g ucgggg(-ga aa)ccc--gu 4741 c--ugauag- --cgc----- ---------- ---------- (uuaa----) ---------- 4801 ---------- gcgaacu--- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA AGGGG-AU-C CGG(UUAAAA UU-)CCGGA| -AC----cgg gacgugg-cg 4981 gu[ug----- ---------- ---------- ---------- -----acg(- -gcaa--)cg 5041 u--------- ---------- ---------- ---------- -----ua-g] gga-guccgg 5101 agac-----g ucg--gcggg gg-c-cucg- -GG-AAGA(G UUAUCUUU-) UCUGUU-|UA 5161 A-cagccug- ---------- ccc|a----C CCUG--GAAA ---CGG(CUC AG-)CCGGA- 5221 GG-UA-GGG- uccag----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----cggc-u gGA-----AG 5341 AGCACCGCA( -cg-ucg-)C GUGGUGUC-c ggugcg---c ccccg---gg cgcC-CUUGA 5401 AAA-uccgga -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaccgag-- ---------- ----ug-ccg -cuc-acg-- cc-cgGUCGU 5581 A|CU--CAUA ACC(GCAUCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| GGUCG-||A- 5641 UG-G--AACA AU-GUAG-GC A-AGGGAAGU CGGCAA-AAU -GGAUCCGUA AC(UUCG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- -(-----)---- -------CUC AGAACU|G(- --GUA)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--UG G|UCC(---- 6661 cugc)GGA-- ---------- --U-GCUAAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU GUCUACUAUC 6901 CA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCC G---ACU-UU |GUGAAAUGA CUUGAGAGGU 7021 GUAGGAUAAG UGGGAGC--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -UUCG)---- 7141 ---------G C-GCAAGUGA AA-UACCACU |ACUUUUAA- -CGUUA-UUU UACUUAc--- 7201 ---------- ---------| --g GACAU-UGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAAAGAUA AC-)GCAG-G U|G|U|CCU- AAGAU-GAGC |UCAAC-GAG 7621 -A(ACA---- GAAA)UCUCG UGUGGA|AC( A|A--AAGG) GUAAAAG-CU C-GUUUGAUU 7681 -CUGAUUU(u c--aguac-- )GAAUACGAA CCGU(-GAAA )GCGUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -a-C-UUC(- -GGAA-U--U U---)----- ---------- 7861 -----GAA|G CUAGAG-GUG UC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GA-)AUUCA CCAA-GUGU| UGGAU(UGUU C)ACCCACCA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGC-C<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->---cG CG-UC-GC-G AUAGUAAUUC AACC(UAGUA 8281 C(GAGA)GGA AC-)CGUUGA U|UCGCACAA UUGGUCAUCG CGC|-UUGGU U(GAAA)AGC 8341 CAGUGGCGCG A-AGCUACC- GU-GCGC--U GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCG-G GCUA--g--a aGCG--ACGC a<----ugcg cccgccgc-c cgauugccga 8461 cccucaguag --gagc(uua g-)gcuc--c aaaggcacgu guc-guuggc uaa----guc 8521 -cguucggc( ggaacg)gu- cg-uucggac -cgccuu--g aa-uuauaau uaccaccga- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------g cggcggg--> --|------( ---)------ 8701 ---uagaauc |cuuug(-ca gacga)cu-u aaaua---cg c-g|acgggg uauuguaagu 8761 gg-cagagug gc----(cuu -gcu------ ---------- ---------- ---------- 8821 ----)----g ccacgauc-c ac-|ugagau u|cagc-ccu u--ugu-c-g cua-aga-uu 8881 cga~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS B.napus 9262 bp RNA RNA 11-JAN-191 DEFINITION Brassica napus (Rapeseed). ACCESSION No information KEYWORDS No information. SOURCE Brassica napus (Rapeseed). ORGANISM Brassica napus (Rapeseed). REFERENCE 1 (bases 1 to 3354) AUTHORS Okumura S., Shimada H. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: D10840 ID D10840 unannotated; DNA; UNA; 4388 BP. XX AC D10840; XX DT 10-JUL-1992 (Rel. 32, Created) DT 10-JUL-1992 (Rel. 32, Last updated, Version 1) XX DE Rapeseed 5.8S rDNA, 25S rDNA. XX KW . XX OS Unknown OC Unclassified. XX RN [1] RP 1-4388 RA Okumura S., Shimada H.; RT "Nucleotide sequence of genes for a 5.8S and 25S rRNA from RT rapeseed (Brassica napus)"; RL Nucleic Acids Res. 20:3510-3510(1992). XX CC Submitted (30-MAR-1992) to DDBJ by: Hiroaki Shimada Mitsui Plant CC Biotechnology Research Institute Sengen 2-1-6 Tsukuba 305 Japan CC Phone: 81-298-58-6115 Fax: 81-298-58-6191 XX FH Key Location/Qualifiers FH XX SQ Sequence 4388 BP; 1114 A; 1067 C; 1254 G; 953 T; 0 other; BASE COUNT 868 a 852 c 1073 g 745 t 5724 others ORIGIN 1 |--------- ---------- ---------- ----CGACUC UCGGCAACGG AUA|UCUCGG 61 |CUCUCAC|A U|-CGAUGAA GAA|CGUA(- -GCGA-AA)U |GC-GAUACU UG-gugu|[- 121 gaauugcaga aucccgugaa c--------- ---------- ---------- -------]-- 181 ---------- ---------- ---caucg|A GUCUUU-GAA Cgc-(aaguu )-g-c|gccc 241 caa------g c(-------- ---------- ---------- -----cuuc- ug-)gc---- 301 --cg-agggc ---acgucug -c-cu-gggu guca--(--- ---caa---/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------g )--cgacccc aggucagg-c gGG----AUC 481 AC|CCGCUGA GG--UU|UA( AGCA)UA-UU AAUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-A)UG-G AU|UCCUUUA GU---AAC(G GCGA)GCG-A A-----CCAG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------gcuu gaaaauugga 781 cguc--(uuc ---)---ggc gu-ucgaauu guagucugg- agaagcaucc uca------- 841 -----gcg-- ---------- ---------- ---------- ---------- ac-gg-accg 901 ggcc-caa-- --g-uuc-c( c-(uggaaa- )g)ggg-c-- ---------- --------GC 961 --|C(AGA)G |AGGG-(UGA GAGC)-CCCG UC|--g-ugc ccggacccug u-----cgca 1021 ccac------ -gaggcgc-u gucuac---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GUU(----UG 1141 GGAA)UGCAG CCCCAA---- ucGGGC-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUC-- ---------- ---------- ---------- )CGU-CCAAG GCU----AAA 1381 UA-------- ---------- UGGGC-GAGA GACCGAUAGC GAAC-AAGUA CC(GCGA)G- 1441 --UAAAGAUG -AAA-AGGAC UUU(ga-aa- )AGAG-AGUC A-AAGAGUGC U-UGAAAU-U 1501 GUCGG-GAG< gg---aagcg gauggggg-g c--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ----agcgau ggcuccuggu cgg--augcg 2221 gaacgga(gc aa-)uccgg- uccgccgau- -cgauucggg gcguggaccg acgcg|gauu 2281 aaggu-ggug accuaagcc- -cgggcuu-- ---------- -----(uugu u)-------- 2341 ---------- --acgccug- -cggagacgu cg-cugc-cu uaaucguggu cugcagcacg 2401 c---gcc(uc ac-)ggc--- gugc-(cucg -)-gcaucu- gcgugcucag g--------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 gcgu-cgg-- --------cc ugu-gggc-- uacccauucg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UGACAUGUGU GCGAGUCa-a cgggu----( ------gagu 2641 aa)------- ---------- ---a-cccg- ---------- u-aaGGCGCA AG(GAAG)CU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------uug gcuggau-cc u--------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( -----cac-- ----)----- ---------- -------ggg -ugcacagcc 3061 g--------- ---------- ---------- ---------- -------acc ga-ccu-uga 3121 uc-(--uucu -)-gagaa-- gggu-ucgag u]-------- ---------G UGAGCAUGC- 3181 -CUG-UCGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCAG- AG|C-GAGGC GACG--AGAG 3241 (GAAA----- -----)CUCU GGU-GGAAGC CCG-CA---G CG-AUACUGA (CGUGCAAA) 3301 UCG-U-UCGU CUGACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGA -GCU--c|-- -|-gga---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- -------aac 3661 g-aguUCUAU -C|GGG--UA AA-GCCAAUG AUUAGAGGC- -----AUCGG GGAC--(gca 3721 a-u)--GUCC U-CGA-|CCU AUUC-UCAAA CUUUA-AAUA |GGUAGGacg -ggguggcu( 3781 gcuuuguug) agccaucc-c acgg------ ---------- ---------- ---------- 3841 ---------- ---------- ----AAUcga g|AG-CUCCA -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- GAAGCCG--- GGUUACG--G 3961 U|GCCC-AAC U-G--CA-CG CUAACcua-- --------ga acccac---- -AAAGGGUGU 4021 U--AGUCGAU AAAGACA-GC AGGACGGUGG UC(AUGG-AA GUC)AAAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-CGA AAA--UGGAU 4141 G--GCG-CU- GAAGCGCGC| G|-------- --ACCUAU-- --ACCCGGC| (- -----)ggcc ucgau-gAGU AGGA------ 4441 --GGG|-CG- CG-GC-GG-- --------U- -C-G-Cug-- c------AAA ACCU-----A 4501 G-GGC(GCGA -)GCCCGGG- CGG|A-GCG| G--CCGUCG- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GGCCGAAGA G-GGG|GAAA GGU|UCAUGU GA-ACG(-GC ACU)UG|CAC 4681 AUGGGUUAGU |-CGA-UCCU AAGA------ -------<-g ucgggg(-ga aa)ccc--gu 4741 c--ugauag- --cgc----- ---------- ---------- (uuau----) ---------- 4801 ---------- gcgaacu--- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA AGGGG-AU-C CGG(UUAAAA UU-)UCGGA| -AC----cgg gacgugg-cg 4981 gu[ug----- ---------- ---------- ---------- -----acg(- -gcaa--)cg 5041 u--------- ---------- ---------- ---------- -----ua-g] gga-gucugg 5101 agac-----g ucg--gcggg aa-u-uccg- -GA-AAGA(G UUAUCUUU-) UCUGUU-|UA 5161 A-cagccug- ---------- ccc|a----C CCUG--GAAA ---CGG(CUC AG-)CCGGA- 5221 GG-UA-GGG- uccag----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----cggc-u gGA-----AG 5341 AGCACCGCA( -cg-ucg-)C GUGGUGUC-c ggugca---u ucccg---gc ggcC-CUUGA 5401 AAA-uccgga -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaccgag-- ---------- ----ug-ccg -cuc-acg-- cc-cggUCGU 5581 A|CU--CAUA ACC(GCAUCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| GGUCG-||A- 5641 UG-G--AACA AU-GUAG-GC A-AGGGAAGU CGGCAA-AAU -GGAUCCGUA AC(AUUG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- -(-----)---- -------CUC AUAACU|G(- --GUA)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--UG G|UCC(---- 6661 cugc)GGA-- ---------- --U-CGUAAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU UUCUACUAUC 6901 CA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCC G---ACU-UU |GUGAAAUGA CUUGAGAGGU 7021 GUAGAAUAAG UGGGAGC--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -UCCG)---- 7141 ---------G C-GCAAGUGA AA-UACCACU |ACUUUUAA- -CGUUA-UUU UACUUAc--- 7201 ---------- ---------| --g GACAU-UGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAAAGAUA AC-)GCAG-G U|G|U|CCU- AAGAU-GAGC |UCAAC-GAG 7621 -A(ACA---- GAAA)UCUCG UGUGGA|AC( A|A--AAGG) GUAAAAG-CU C-GUUUGAUU 7681 -CUGAUUU(u c--aguac-- )GAAUACGAA CCAU(-GAAA )GCGUGG|CA --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -A-C-UUC(- -GGAA-U--U U---)----- ---------- 7861 -----GAA|G CUAGAG-gug uC|aGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GA-)AUUCA CCAA-GUGU| UGGAU(UGUU C)ACCCACCA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGC-C<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->---cG CA-UC-GC-A AUAGUAAUUC AACC(UAGUA 8281 C(GAGA)GGA AC-)CGUUGA U|UCGCACAA UUUGUCAUCG CGC|-UUGGU U(GAAA)AGC 8341 CAGUGGCGCG A-AGCUACC- GU-GCGC--U GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCA-G GCUA--g--a aGCG--ACGC a<----ugcg cccgccgc-c cgauugccga 8461 cccucagua- --gagc(uuc g-)gcuc-cc aaa-gcacgu guc-guuggc uaa----guc 8521 -cguucggu( ggaagc)gc- cg-uucggac -cgccuu--g aa-uuauaau ua-caccga- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------g uggcggg--> --|------( ---)------ 8701 ---uagaauc |cuuug(-ca gacga)cu-u aaaua---cg c-g|acgggg uauuguaagu 8761 gg-cagagug gc----(cuu -gcu------ ---------- ---------- ---------- 8821 ----)----g ccacgauc-c ac-|ugagau u|cagc-ccu u--ugu-c-g cua-aga-uu 8881 cga--|---- ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS S.alba.1 9262 bp RNA RNA 11-JAN-191 DEFINITION Sinapis alba (Mustard). ACCESSION No information KEYWORDS No information. SOURCE Sinapis alba (Mustard). ORGANISM Sinapis alba (Mustard). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X15915 and X57137 LOCUS SALRRN18 922 bp ds-DNA PLN 15-MAR-1990 DEFINITION Mustard 18S-25S rRNA spacer DNA. ACCESSION X15915 KEYWORDS 18S ribosomal RNA; 25S ribosomal RNA; 5.8S ribosomal RNA; SOURCE Sinapis alba. ORGANISM Sinapis alba Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; Dilleniidae; Capparales; Brassicaceae. FEATURES Location/Qualifiers rRNA <1..228 /note="18S ribosomal RNA" rRNA 484..656 /note="5.8S ribosomal RNA" rRNA 845..>922 /note="25S ribosomal RNA" ID SA25SR standard; DNA; PLN; 3381 BP. AC X57137; DE Sinapis alba gene for 25S rRNA KW 25S ribosomal RNA. OS Sinapis alba (mustard) OC Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; OC Dilleniidae; Capparales; Brassicaceae. FT rRNA 1..3381 FT /product="25S rRNA" BASE COUNT 858 a 870 c 1085 g 741 t 5708 others ORIGIN 1 |--------- ---------- uguaaagucu aaaaCGACUC UCGGCAACGG AUA|UCUU-G 61 |CUCUCGC|A U|-CGAUGAA GAA|CGUA(- -GCGA-AA)U |GC-GAUACU UG-gugu|[- 121 gaauuacagg aucccgugaa c--------- ---------- ---------- -------]-- 181 ---------- ---------- ---caucg|A GUCUUU-GAA Cgc-(aaguu )-g-c|gccc 241 caa------g c(-------- ---------- ---------- -----cuuc- ug-)gc---- 301 --cg-agggc ---acgucuc -c-cu-gggu gucac-(--- ---aa----/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------g )--cgacccc aggucagg-c gGG----AUC 481 AC|CCGCUGA -G--UU|UA( AGCA)UA-UC AAUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-A)AG-G AU|UCCCCUA GU---AAC(G GCGA)GCG-A A-----CCGG GAAC------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------gcuu gaaaaucgga 781 cguc--(uuc g--)---u-c gu-ucgaauu guagucugg- agaagcgucc uca------- 841 -----gcg-- ---------- ---------- ---------- ---------- ac-gg-accg 901 g-cc-caa-- --g-uuc-c( c-(uggaaa- )g)ggg-c-- ---------- --------GC 961 --|C(AGA)G |AGGG-(UGA GAGC)-CCCG UC|--g-ugc ccggacccug u-----cgca 1021 ccac------ -gaggcgc-u gucuac---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GUU(----UG 1141 GGAA)UGCAG CCCCAA---- uaGGGC-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUC-- ---------- ---------- ---------- )CGU-CCAAG GCU----AAA 1381 UA-------- ---------- UGGGC-GAGA GACCGAUAGC GAAC-AAGUA CC(GCGA)G- 1441 G-UAAAGAUG -AAA-AGGAC UUU(ga-aa- )AGAG-AGUC A-AAGAGUGC U-UGAAAU-U 1501 GUCGG-GAG< gg---aagcg gauggggg-c c--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ----ggcgau gcgucccggu cgg--augcg 2221 gaacgga(gc aa-)uccgg- uccgccgau- -cgauucggg gcguggaccg acgcg|gauu 2281 aaggu-ggug gccuaagcc- -cgggcuu-- ---------- -----(uugu u)-------- 2341 ---------- --aggcccg- -uggagacgu cg-cugc-cu uaaucguggu cugcagcacg 2401 c---gcc(uc ac-)ggc--- gugc-(cucg -)-gcaucu- gcgugcucag g--------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 gcgu-cgg-- --------cc ugu-gggc-- uccccauucg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UGACAUGUGU GCGAGUCa-a cgggu----( ------gagu 2641 aa)------- ---------- ---a-cccg- ---------- u-aaGGCGCA AG(GAAG)CU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------uug gcgagau-cc c--------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----ucac-- ----)----- ---------- -------ggg -ugcaucgcu 3061 g--------- ---------- ---------- ---------- -------acc ga-ccu-uga 3121 uc-(--uucu -)-gagaa-- gggu-ucgag u]-------- ---------G UGAGCAUGC- 3181 -CUG-UCGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AG|C-GGGGC -AAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC CCG-CA---G CG-AUACUGA (CGUGCAAA) 3301 UCG-U-UCGU CUGACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGA -GCU--c|-- -|-gga---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- -------aac 3661 g-aguUCUAU -C|AGG--UA AA-GCCAAUG AUUAGAGGC- -----AUCGG G-GC--(gca 3721 a-u)--GCCC U-CGA-|CCU AUUC-UCAAA CUUUA-AAUA |GGUAGGacg -ggguggcu( 3781 gcuuuguug) agccaucc-c acgg------ ---------- ---------- ---------- 3841 ---------- ---------- ----AAUcga g|AG-CUCCA -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)C-G-- GAAGCCG--- GGUUACG--G 3961 U|GCCC-AAC U-G--CG-CG CUAACcua-- --------ga acccac---- -AAAGGGUGU 4021 U--GGUCGAU UAAGACA-GC AGGACGGUGG UC(AUGG-AA GUC)GAAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-CGA AAA--UGGAU 4141 G--GCG-CU- UAAGCGCGC| G|-------- --ACCUAU-- --ACCCGGC| (- -----)ggcc ucgau-gAGU AGGA------ 4441 --GGG|-CG- CG-GC-GG-- --------U- -C-G-Cug-- c------AAA ACCU-----A 4501 G-GGC(GCGA -)GCCCGGG- CGC|G-ACG| G--CCGUCG- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GGCCGAAGA G-GGG|AAAG GUU|CCAUGU GA-ACG(-GC ACU)UG|CAC 4681 AUGGGUUAGU |-CGA-UCCU AAGA------ -------<-g ucgggg(-ga aa)ccc--gu 4741 c--ugaua-- --gcgc---- ---------- ---------- (uuau----) ---------- 4801 ---------g cgcgaacu-- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA AGGGG-AU-C CGG(UUAAAA UU-)CCGGA| -AC----cgg gacgugg-cg 4981 gu[ug----- ---------- ---------- ---------- -----acg(- -gcaa--)cg 5041 u--------- ---------- ---------- ---------- -----ua-g] gga-guccgg 5101 agac----cg ucg--gcgg- aa-u-uccg- -GG-AAGA(G UUAUCUUU-) UCUGUU-|UA 5161 A-cagccug- ---------- ccc|a----C CCUG--GAAA ---CGG(CUC AGg)CC--A- 5221 GG-UA-GGG- uccag----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----cggc-u gGA-----AG 5341 AGCACCGCA( -cg-ucg-)C GUGGUGUC-c ggugca---u ucccg---gc ggcC-CUUGA 5401 AAA-uccgga -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaccgag-- ---------- ----ug-ccg -cuc-acg-- cc-cggUCGU 5581 A|CU--CAUA ACC(GCAUCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| GGUCG-||A- 5641 UG-G--AACA AU-GUAG-GC A-AGGGAAGU CGGCAA-AAU -GGAUCCGUA AC(UUCG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- -(-----)---- -------CUC AGAACU|G(- --GUA)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--UG G|UCC(---- 6661 cugc)GGA-- ---------- --U-GCUAAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU GUCUACUAUC 6901 CA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCC G---ACU-UU |GUGAAAUGA CUUGAGAGGU 7021 GUAGAAUAAG UGGGAGC--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -UCCG)---- 7141 ---------G C-GCAAGUGA AA-UACCACU |ACUUUUAA- -CGUUA-UUU UACUUAc--- 7201 ---------- ---------| --g GACAU-UGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAAAGAUA AC-)GCAG-G U|G|U|CCU- AAGAU-GAGC |UCAAC-GAG 7621 -A(ACA---- GAAA)UCUCG UGUGGA|AC( A|A--AAGG) GUAAAAG-CU C-GUUUGAUU 7681 -CUGAUUU(u c--aguac-- )GAAUACGAA CCGU(-GAAA )GCGUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -A-C-UUC(- -GGAA-U--U U---)----- ---------- 7861 -----GAA|G CUAGAG-gug uC|aGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GA-)AUUCA CCAA-GUGU| UGGAU(UGUU C)ACCCACCA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUAGU GAUGC-c<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->---cG CG-UC-GC-A GUAGUAAUUC AACC(UAGUA 8281 C(GAGA)GGA AC-)CGUUGA U|UCGCACAA UUGGUCAUCG CGC|-UUGGU U(GAAA)AGC 8341 CAGUGGCGCG A-AGCUACC- GU-GCGC--U GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCG-G GCUA--g--a aGCG--ACGC a<----ugug cccgccgc-c cgauugccga 8461 cccucagua- -ggagc(uuc g-)gcucc-c aaaggcacgu guc-guuggc uaa----guc 8521 -cguuuggu( ggaagc)gc- cg-uucggac -cgccuu--g aa-uuauaau uaccaccga- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------g cggcggg--> --|------( ---)------ 8701 ---uagaauc |cuuug(-ca gacga)cu-u aaaua---cg c-g|acgggg uauuguaagu 8761 gg-cagagug gc----(cuu -gcu------ ---------- ---------- ---------- 8821 ----)----g ccacgauc-c ac-|ugagau u|cagc-ccu u--ugu-c-g cua-aga-uu 8881 cga--|---- ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS S.alba.2 9262 bp RNA RNA 11-JAN-191 DEFINITION Sinapis alba (Mustard). ACCESSION No information KEYWORDS No information. SOURCE Sinapis alba (Mustard). ORGANISM Sinapis alba (Mustard). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X66325 LOCUS SALRIBRNA 9003 bp ds-DNA PLN 14-JUL-1992 DEFINITION S.alba 18S, 5.8S & 25S rRNA genes ACCESSION X66325 KEYWORDS 18S ribosomal RNA; 25S ribosomal RNA; 5.8S ribosomal RNA; ribosomal RNA. SOURCE Sinapis alba DNA. ORGANISM Sinapis alba Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; Dilleniidae; Capparales; Brassicaceae. REFERENCE 1 (bases 1 to 9003) AUTHORS Capesius,I. TITLE The ribosomal gene from Sinapis alba. JOURNAL Unpublished (1992) COMMENT *source: stage=adult plant; *source: tissue=bud; See also X17062 & X57137 From EMBL entry SARIBRNA; dated 03-JUN-1992. FEATURES Location/Qualifiers misc_RNA 1..294 rRNA 295..2098 /gene="18S rRNA" misc_RNA 2099..2363 rRNA 2364..2526 /gene="5.8S rRNA" misc_RNA 2527..2714 rRNA 2715..6095 /gene="25S rRNA" misc_RNA 6096..9003 BASE COUNT 2248 a 2172 c 2464 g 2119 t ORIGIN BASE COUNT 855 a 868 c 1084 g 737 t 5718 others ORIGIN 1 |--------- ---------- ---------- aaaaCGACUC UCGGCAACGG AUA|UCUU-G 61 |CUCUCGC|A U|-CGAUGAA GAA|CGUA(- -GCGA-AA)U |GC-GAUACU UG-gugu|[- 121 gaauugcaag aucccgugaa c--------- ---------- ---------- -------]-- 181 ---------- ---------- ---caucg|A GUCUUU-GAA Cgc-(aaguu )-g-c|gccc 241 caa------g c(-------- ---------- ---------- -----cuuc- ug-)gc---- 301 --cg-agggc ---acgucug -c-cu-gggu gucac-(--- ---aa----/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------g )--cgacccc aggucagg-c gGG----AUC 481 AC|CCGCUGA -G--UU|UA( AGCA)UA-UC AAUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-A)AG-G AU|UCCCCUA GU---AAC(G GCGA)GCG-A A-----CCGG GAAC------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------gcuu gaaaaucgga 781 cguc--(uuc g--)---u-c gu-ucgaauu guagucugg- agaagcgucc uca------- 841 -----gcg-- ---------- ---------- ---------- ---------- ac-gg-accg 901 g-cc-caa-- --g-uuc-c( c-(uggaaa- )g)ggg-c-- ---------- --------GC 961 --|C(AGA)G |AGGG-(UGA GAGC)-CCCG UC|--g-ugc ccggacccug u-----cgca 1021 ccac------ -gaggcgc-u gucuac---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GUU(----UG 1141 GGAA)UGCAG CCCCAA---- uaGGGC-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUC-- ---------- ---------- ---------- )CGU-CCAAG GCU----AAA 1381 UA-------- ---------- UGGGC-GAGA GACCGAUAGC GAAC-AAGUA CC(GCGA)G- 1441 G-UAAAGAUG -AAA-AGGAC UUU(ga-aa- )AGAG-AGUC A-AAGAGUGC U-UGAAAU-U 1501 GUCGG-GAG< gg---aagcg gauggggg-c c--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ----ggcgau gcgucccggu cgg--augcg 2221 gaacgga(gc aa-)uccgg- uccgccgau- -cgauucggg gcguggaccg acgcg|gauu 2281 aaggu-ggug gccuaagcc- -cgggcuu-- ---------- -----(uugu u)-------- 2341 ---------- --aggcccg- -uggagacgu cg-cugc-cu uaaucguggu cugcagcacg 2401 c---gcc(uc ac-)ggc--- gugc-(cucg -)-gcaucu- gcgugcucag g--------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 gcgu-cgg-- --------cc ugu-gggc-- uccccauucg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UGACAUGUGU GCGAGUCa-a cgggu----( ------gagu 2641 aa)------- ---------- ---a-cccg- ---------- u-aaGGCGCA AG(GAAG)CU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------uug gcgagau-cc c--------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----ucac-- ----)----- ---------- -------ggg -ugcaucgcu 3061 g--------- ---------- ---------- ---------- -------acc ga-ccu-uga 3121 uc-(--uucu -)-gagaa-- gggu-ucgag u]-------- ---------G UGAGCAUGC- 3181 -CUG-UCGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AG|C-GGGGC -AAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC CCG-CA---G CG-AUACUGA (CGUGCAAA) 3301 UCG-U-UCGU CUGACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGA -GCU--c|-- -|-gga---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- -------aac 3661 g-aguUCUAU -C|AGG--UA AA-GCCAAUG AUUAGAGGC- -----AUCGG G-GC--(gca 3721 a-u)--GCCC U-CGA-|CCU AUUC-UCAAA CUUUA-AAUA |GGUAGGacg -ggguggcu( 3781 gcuuuguug) agccaucc-c acgg------ ---------- ---------- ---------- 3841 ---------- ---------- ----AAUcga g|AG-CUCCA -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)C-G-- GAAGCCG--- GGUUACG--G 3961 U|GCCC-AAC U-G--CG-CG CUAACcua-- --------ga acccac---- -AAAGGGUGU 4021 U--GGUCGAU UAAGACA-GC AGGACGGUGG UC(AUGG-AA GUC)GAAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-CGA AAA--UGGAU 4141 G--GCG-CU- UAAGCGCGC| G|-------- --ACCUAU-- --ACCCGGC| (- -----)ggcc ucgau-gAGU AGGA------ 4441 --GGG|-CG- CG-GC-GG-- --------U- -C-G-Cug-- c------AAA ACCU-----A 4501 G-GGC(GCGA -)GCCCGGG- CGC|G-ACG| G--CCGUCG- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GGCCGAAGA G-GGG|AAAG GUU|CCAUGU GA-ACG(-GC ACU)UG|CAC 4681 AUGGGUUAGU |-CGA-UCCU AAGA------ -------<-g ucgggg(-ga aa)ccc--gu 4741 c--ugaua-- --gcgc---- ---------- ---------- (uuau----) ---------- 4801 ---------g cgcgaacu-- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA AGGGG-AU-C CGG(UUAAAA UU-)CCGGA| -AC----cgg gacgugg-cg 4981 gu[ug----- ---------- ---------- ---------- -----acg(- -gcaa--)cg 5041 u--------- ---------- ---------- ---------- -----ua-g] gga-guccgg 5101 agac----cg ucg--gcgg- aa-u-uccg- -GG-AAGA(G UUAUCUUU-) UCUGUU-|UA 5161 A-cagccug- ---------- ccc|a----C CCUG--GAAA ---CGG(CUC AGg)CC--A- 5221 GG-UA-GGG- uccag----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----cggc-u gGA-----AG 5341 AGCACCGCA( -cg-ucg-)C GUGGUGUC-c ggugca---u ucccg---gc ggcC-CUUGA 5401 AAA-uccgga -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaccgag-- ---------- ----ug-ccg -cuc-acg-- cc-cggUCGU 5581 A|CU--CAUA ACC(GCAUCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| GGUCG-||A- 5641 UG-G--AACA AU-GUAG-GC A-AGGGAAGU CGGCAA-AAU -GGAUCCGUA AC(UUCG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- -(-----)---- -------CUC AGAACU|G(- --GUA)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--UG G|UCC(---- 6661 CUGC)GGA-- ---------- --U-GCUAAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU GUCUACUAUC 6901 CA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCC G---ACU-UU |GUGAAAUGA CUUGAGAGGU 7021 GUAGAAUAAG UGGGAGC--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -UCCG)---- 7141 ---------G C-GCAAGUGA AA-UACCACU |ACUUUUAA- -CGUUA-UUU UACUUAc--- 7201 ---------- ---------| --g GACAU-UGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAAAGAUA AC-)GCAG-G U|G|U|CCU- AAGAU-GAGC |UCAAC-GAG 7621 -A(ACA---- GAAA)UCUCG UGUGGA|AC( A|A--AAGG) GUAAAAG-CU C-GUUUGAUU 7681 -CUGAUUU(u c--aguac-- )GAAUACGAA CCGU(-GAAA )GCGUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -a-C-UUC(- -GGAA-U--U U---)----- ---------- 7861 -----GAA|G CUAGAG-gug uC|aGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GA-)AUUCA CCAA-GUGU| UGGAU(UGUU C)ACCCACCA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUAGU GAUGC-c<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->---cG CG-UC-GC-A GUAGUAAUUC AACC(UAGUA 8281 C(GAGA)GGA AC-)CGUUGA U|UCGCACAA UUGGUCAUCG CGC|-UUGGU U(GAAA)AGC 8341 CAGUGGCGCG A-AGCUACC- GU-GCGC--U GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCG-G GCUA--g--a aGCG--ACGC a<----ugug cccgccgc-c cgauugccga 8461 cccucagua- -ggagc(uuc g-)gcucc-c aaaggcacgu guc-guuggc uaa----guc 8521 -cguuuggu( ggaagc)gc- cg-uucggac -cgccuu--g aa-uuauaau uaccaccga- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------g cggcggg--> --|------( ---)------ 8701 ---uagaauc |cuuug(-ca gacga)cu-u aaaua---cg c-g|acgggg uauuguaagu 8761 gg-cagagug gc----(cuu -gcu------ ---------- ---------- ---------- 8821 ----)----g ccacgauc-c ac-|ugagau u|cagc-ccu u--ugu-c-g cua-aga-uu 8881 cga--|---- ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS M.sativa 9262 bp RNA RNA 11-JAN-191 DEFINITION Medicago sativa. ACCESSION No information KEYWORDS No information. SOURCE Medicago sativa. ORGANISM Medicago sativa. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: Z11498 LOCUS ALFRRN26S 1617 bp ss-mRNA PLN 12-MAR-1992 DEFINITION M.sativa 26S rRNA ACCESSION Z11498 KEYWORDS 26S ribosomal RNA; ribosomal rna. SOURCE Medicago sativa RNA. ORGANISM Medicago sativa Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; Rosidae; Rosales; Fabaceaea. REFERENCE 1 (bases 1 to 1617) AUTHORS Shorrosh,B.S. JOURNAL Unpublished (1991) REFERENCE 2 (bases 1 to 1617) AUTHORS Shorrosh,B.S. and Dixon,R.A. TITLE Sequence analysis of an alfalfa 26S rRNA JOURNAL Unpublished (1992) COMMENT *source: strain=cv. Apollo; From EMBL entry MSRRN26S; dated 07-FEB-1992. FEATURES Location/Qualifiers rRNA 1..1617 /standard_name="26S ribosomal RNA" BASE COUNT 387 a 383 c 472 g 375 t ORIGIN BASE COUNT 387 a 383 c 472 g 375 t 7645 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~|~~~~~~~ ~~~~~~|~~( ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 541 ~~~~~)~~~~ ~~|~~~~~~~ ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~(~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~( ~~(~~~~~~~ )~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 --|~(~~~)~ |~~~~-(~~~ ~~~~)~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~(~~~~~~ 1141 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~-~(~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ 1381 ~~-------- --------~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ )~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~< ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~(~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~)~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ >~~~~~~~~~ ~~~(~~~~~~ 2581 ~~)~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ 2641 ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~)~~ 2701 ~~[-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~------ -~~~~~~~-- -----~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~( ~~~~~~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~(~-~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~]~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~|~~~~~~~ ~~~~~~~~~~ 3241 (~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~) 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ 3361 ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ --(~~~~)~~ 3421 ~~~~~~~~~~ ~~~~~~~|~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ -~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -~~~~~~~~~ ~~~~~~(~~~ 3721 ~~~)~~~~~~ ~~~~~-|~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~--~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~-~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 3901 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~)~~~~~ ~~~~~~~~-- ~~~~~~~--~ 3961 ~|~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~|~(~~~)~ 4081 |~~~~~~(~~ ~~~~)~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| <~~~~~~~~~ 4201 ~~~~(~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~>(~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4441 ~~~~~|~~~~ ~~~~~~~~-- -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4501 ~~~~~(~~~~ ~)~~~~~~~~ ~~~|~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ 4561 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4621 ~~)~~~~~~~ |~~~~~~~~~ ~~~~~|~~~~ ~~~|~~~~~~ ~~~~~~(~~~ ~~~)~~|~~~ 4681 ~~~~~~~~~~ |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~<~~ ~~~~~~(~~~ ~~)~~~~~~~ 4741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- -------~~~ (~~~~~~~~) ~~~~-~~~~~ 4801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~>~~~ 4921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~(~~~~~~ ~~~)~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 4981 ~~[~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 5041 ~~~~~~~~~~ ~~~~~~~~~~ ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~] ~~~~~~~~~~ 5101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ uuuucuuu-) uuuuuu-|UA 5161 A-cagccug- ---------- ccc|a----C CCUG--GAAA ---CGG(CUC AG-)CCGGA- 5221 GG-UA-GGG- Uccag----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----cggc-u gGA-----AG 5341 AGCACCGCA( -cg-ucg-)C GUGGUGUC-c ggugcg---c cccug---gc ggcC-CUUGA 5401 AAA-uccgga -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaccgag-- ---------- ----ug-ccu -ucc-aug-- cc-cggUCGU 5581 A|CU--CAUA ACC(GCAUCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| GGUCG-||A- 5641 UG-G--AACA AU-GUAG-GC A-AGGGAAGU CGGCAA-AAU -GGAUCCGUA AC(CUCG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- -(-----)---- -------CUC AGAACU|G(- --GUA)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--UG G|UCC(---- 6661 cugc)GGA-- ---------- --U-GUUGAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU C)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU GUCUACUAUC 6901 CA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCG -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCC G---ACU-UU |GUGAAAUGA CUUGAGAGGU 7021 GUAGGAUAAG UGGGAGCUg- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -GAAA)---- 7141 -------caG C-GAAAGUGA AA-UACCACU |ACUUUUAA- -CGUUA-UUU UACUUAu--- 7201 ------(--- --)------| --a GACAU-UGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAAAGAUA AC-)GCAG-G U|G|U|CCU- AAGAU-GAGC |UCAAC-GAG 7621 -A(ACA---- GAAA)UCUCG UGUGGA|AC( A|A--AAGG) GUAAAAG-CU C-GUUUGAUU 7681 -CUGAUUU(c c--aguac-- )GAAUACGAA CCGU(-GAAA )GCGUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -ACC-UUC(- -GGAA-U--U U---)----- ---------- 7861 -----GAA|G CUAGAG-gug uc|aGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GA-)AUUCA CCAA-GUGU| UGGAU(UGUU C)ACCCACCA 8041 AUAGGGAACG UGAGCUGGGA UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-c<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->---aG UG-UC-GC-A AUAGUAAUUC AACC(UAGUA 8281 C(GAGA)GGA AC-)CGUUGA U|UCGCACAA UUGGUCAUCG CGC|-UUGGU U(GAAA)AGC 8341 CAGUGGCGCG A-AGCUACC- GU-GCGU--U GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCG-G GCUA--g--a agCG--AUGC g<----ugug cccgucgu-u cgcuugccga 8461 ccagcaguag -ggggc(cuu g-)gcccccg agaggcacgu gcc-guuggu ggac---cuc 8521 -gu-aaggc( ggauga)gc- uu---acggg acacuuu--g aa-acgcaau uccuauuga- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------g cggcggg--> --|------( ---)------ 8701 ---uacaauc |cuuug(-c~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 8761 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8821 ~~~~)~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS E.lucida 9262 bp RNA RNA 28-JAN-1997 DEFINITION Eucryphia lucida (Eucryphiaceae); . ACCESSION AF036494 KEYWORDS . SOURCE Eucryphia lucida (Eucryphiaceae). ORGANISM Eucryphia lucida (Eucryphiaceae). REFERENCE 1 (bases 1 to 3363) AUTHORS Doug and Pam Soltis JOURNAL Mol. Biol. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 3363) AUTHORS Kuzoff,R.K., Sweere,J.A., Soltis,D.E., Soltis,P.S. and Zimmer,E.A. TITLE Direct Submission JOURNAL Submitted (03-DEC-1997) Botany, Washington State University, 324 Science Hall, Pullman, WA 99164-4238, USA STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF036494 BASE COUNT 784 a 867 c 1070 g 642 t 5899 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~cccc aggucagg-c gGG----AUU 481 AC|CCGCUGA -A--UU|UA( AGCA)UA-UC AAUAAG-C-G G-AGGAAA-- --AGAAACU( 541 UAC-C)AG-G AU|UCCCUUA GU---AAC(G GCGA)GCG-A A-----CCGG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------gcuu gagaaucggg 781 cgcc--(cuc g--)---g-c gu-ccgaauu guagucugg- agaagcgucc uca------- 841 -----gcg-- ---------- ---------- ---------- ---------- gc-gg-accg 901 ggcc-caa-- --g-ucc-c( c-(uggaag- )g)ggg-c-- ---------- --------GC 961 --|C(GGA)G |AGGG-(UGA GAGC)-CCCG UC|--g-ugc ccggacccug u-----cgca 1021 ccac------ -gaggcgc-u gucggc---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GUU(----UG 1141 GGAA)UGCAG CCCAAA---- ucGGGC-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUC-- ---------- ---------- ---------- )CGU-CCAAG GCU----AAA 1381 UA-------- ---------- CGGGC-GAGA GACCGAUAGC AAAC-AAGUA CC(GCGA)G- 1441 G-GAAAGAUG -AAA-AGGAC UUU(ga-aa- )AGAG-AGUC A-AAGAGUGC U-UGAAAU-U 1501 GUCCG-GGA< gg--gaagcg gauggggg-c c--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ----ggcgau gcgccccggu cgg--augug 2221 gaacggc(gu ca-)gccgg- uccgccgau- -cgacucggg gcguggaccg augcg|gauu 2281 gcggc-ggcg gcccaagcc- -cgggccu-- ---------- -----(uaga a)-------- 2341 ---------- --acgcucg- -uggagaugu cg-ucgc-cg cgaucgugga uggcagcgcg 2401 c---gcc(gu cac)ggc--- gugc-(cucg -)-gcaccu- gcgcgcuccu g--------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 gcau-cgg-- --------cc ugc-gggc-- uccccauucg >------GCC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UGACAUGUGU GCGAGUCa-a cgggc----( ------uagu 2641 aa)------- ---------- ---a-cccg- ---------- u-aaGGCGUA AG(GAAG)CU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------uug gcgggau-cc cu-------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----cuug-- ----)----- ---------- ------gggg -ugcaccgcc 3061 g--------- ---------- ---------- ---------- -------acc ga-ccu-uga 3121 uc-(--uucu -)-gagaa-- gggu-ucgag u]-------- ---------G AGAGCAUGC- 3181 -CUG-UCGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AG|C-GGGGC GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC CCG-CA---G CG-AUACUGA (CGUGCAAA) 3301 UCG-U-UCGU CUGACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC GUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGA -GCC--c|-- -|-gcg---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------gg 3661 cgaguUCUAU -C|GGG--UA AA-GCCAAUG AUUAGAGGC- -----AUCGG GGGC--(gca 3721 a-c)--GCCC U-CGA-|CCU AUUC-UCAAA CUUUA-AAUA |GGUAGGacg -gcgcggcu( 3781 gcuucguug) agccgcgc-u acgg------ ---------- ---------- ---------- 3841 ---------- ---------- ----AAUcga g|AG-CUCCA -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- AAAGCCG--- GGUUACG--G 3961 U|GCCC-AAC U-G--CG-CG CUAACcua-- --------ga acccac---- -AAAGGGUGU 4021 U--GGUCGAU UAAGACA-GC AGGACGGUGG UC(AUGG-AA GUC)GAAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-CGA AAA--UGGAU 4141 G--GCG-CU- GAAGCGCGC| G|-------- --ACCCAC-- --ACCCGGC| (- -----)ggcc ccgau-gAGU AGGA------ 4441 --GGG|-CG- CG-GC-GG-- --------U- -C-G-Cug-- c------AAA ACCC-----G 4501 G-GGC(GCGA -)GCCCGGG- CGG|A-GCG| G--CCGUCG- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GGCCGAAGA G-GGG|AAAG GUU|CCAUGU GA-ACG(-GC ACU)UG|CAC 4681 AUGGGUUAGU |-CGA-UCCU AAGA------ -------<-g acgggg(-ga ag)ccc--gu 4741 c--ugauag- --cgcg---- ---------- ---------- (auccg---) ---------- 4801 ---------c gcgaacu--- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA AGGGA-AU-C GGG(UUAAAA UU-)CCUGA| -AC----cgg gacgugg-cg 4981 gc[ug----- ---------- ---------- ---------- -----acg(- -gcaa--)cg 5041 u--------- ---------- ---------- ---------- -----ua-g] gga-guccgg 5101 agac-----g ccg--gcggg gg-c-cucg- -UU-AAGA(G UUAUCUUU-) UCUGUU-|UA 5161 A-cagccug- ---------- ccc|a----C CCUG--GAAA ---CGG(CUC AG-)CCGGA- 5221 GG-UA-GGG- uccag----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----cggc-u gGA-----AG 5341 AGCACCGCA( -cg-ucg-)C GUGGUGUC-c ggugcg---c ccccg---gc ggcC-CUUGA 5401 AAA-uccgga -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaccgag-- ---------- ----ug-ccu -ccc-acg-- cc-cgGUCGU 5581 A|CU--CAUA ACC(GCAUCA )GG|UCU-CC CAGGU(GAAC A)GCCUCU-| GGUCG-||A- 5641 UG-G--AACA AU-GUAG-GC A-AGGGAAGU CGGCAA-AAU -GGAUCCGUA AC(CUCG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- -(-----)---- -------CUC AGAACU|G(- --GUA)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--UG G|UCC(---- 6661 cugc)GGA-- ---------- --U-GCUAAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU GUCUACUAUC 6901 CA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG C-GGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCC G---ACU-UU |GUGAAAUGA CUUGAGAGGU 7021 GUAGGAUAAG UGGGAGCc-- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(c uaacc)---- 7141 --------gG C-GAAUGUGA AA-UACCACU |ACUUUUAA- -CGUUA-UUU UACUUAu--- 7201 ---------- ---------| --a GACAU-UGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAAAGAUA AC-)GCAG-G U|G|U|CCU- AAGAU-GAGC |UCAAC-GAG 7621 -A(ACA---- GAAA)UCUCG UGUGGA|AC( A|A--AAGG) GUAAAAG-CU C-GUUUGAUU 7681 -CUGAUUU(c c--aguac-- )GAAUACGAA CCGU(-GAAA )GCGUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -acC-UUC(- -GGAA-U--U U---)----- ---------- 7861 -----GAA|G CUAGAG-gug uC|aGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GA-)AUUCA CCAA-GUGU| UGGAU(UGUU C)ACCCACCA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-C<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->---aG CG-UC-GC-A AUAGUAAUCC AACC(UAGUA 8281 C(GAGA)GGA AC-)CGUUGA U|UCGCACAA UUGGUCAUCG CGC|-UUGGU U(GAAA)AGC 8341 CAGUGGCGCG A-AGCUACC- GU-GCGC--U GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCG-G GCUA--g--a aGCG--ACGC a<----ugcg cccgucgc-c cgauugccga 8461 ccagcaguag -gggcc(ccc g-)ggucccc aaaggcacgu guc-auuggc caa----gcc 8521 -cgcacggc( agacaa)gc- cg-cgcgggc -cgccuu--g aa-guucaau uccuaccga- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------g cggcggg--> --|------( ---)------ 8701 ---uagaauc |cuuug(-ca gacga)cu-u aaaua---cg c-g|acgggg uauuguaagu 8761 gg-cagagug gc----(cuu -gcu------ ---------- ---------- ---------- 8821 ----)----g ccacgauc-c ac-|uga~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Fra.x.anan 9262 bp RNA RNA 11-JAN-191 DEFINITION Fragaria x ananassa (Strawberry). ACCESSION No information KEYWORDS No information. SOURCE Fragaria x ananassa (Strawberry). ORGANISM Fragaria x ananassa (Strawberry). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X15589+X58118 ID FA58S standard; DNA; PLN; 620 BP. XX AC X15589; XX DT 15-NOV-1990 (author review) DT 22-MAY-1990 (annotation) XX DE Strawberry (octoploid) DNA for 5.8S ribosomal rRNA XX KW 5.8S ribosomal RNA; internal transcribed spacer; ribosomal RNA. XX OS Fragaria ananassa OC Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; OC Rosidae; Rosales; Rosaceae; Rosoideae. XX RN [1] (bases 1-620) RA Simovic N.; RT ; RL Submitted (19-JUN-1989) on tape to the EMBL Data Library by: RL Simovic N., Rutgers University Cook College, Dept of Horticulture & RL Forestry, P O Box 231 New Brunswick, NJ 08903 , U S A. XX RN [2] (bases 1-620) RA Simovic N., Wolyn D., Jelenkovic G.; RT "The nucleotide sequence of 5.8S rDNA and two internal transcribed RT ribosomal spacers from octoploid strawberry"; RL Unpublished. XX CC *source: library=lambda; strain=genotype 8343-6; clone=lambda FR1/ CC *source: rho FR1-11. XX CC Data kindly reviewed (19-SEP-1990) by Simovic N. XX FH Key Location/Qualifiers FH FT precursor_RNA <1..>620 FT /note="transcript" FT misc_feature <1..249 FT /note="internal transcribed spacer 1" FT rRNA 250..413 FT /note="5.8S rRNA" FT misc_feature 414..>620 FT /note="internal transcribed spacer 2" XX XX SQ Sequence 620 BP; 107 A; 201 C; 193 G; 119 T; 0 other; ID FA26SRN standard; DNA; PLN; 3377 BP. AC X58118; DE F.ananassa 26s rRNA gene KW 26S ribosomal RNA. OS Fragaria ananassa OC Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; OC Rosidae; Rosales; Rosaceae; Rosoideae. FT rRNA 1..3377 FT /product="26s rRNA" XX BASE COUNT 829 a 887 c 1102 g 723 t 5721 others ORIGIN 1 |--------- ---------- ---------c uaaaCGACUC UCGGCAACGG AUA|UCUCGG 61 |CUCUCGC|A U|-CGAUGAA GAA|CGUA(- -GCGA-AA)U |GC-GAUACU UG-gugu|[- 121 gaauugcaga aucccgugaa c--------- ---------- ---------- -------]-- 181 ---------- ---------- ---caucg|A GUCUUU-GAA Cgc-(aaguu )-g-c|gccc 241 gaa------g c(-------- ---------- ---------- -----cguu- ac-)gc---- 301 --ga--gggc ---acgucug -c-cu-gggc guca--(--- ---cac---/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- --------cg )--cgacccc aggucagg-c gGG----GUU 481 AC|CCGCUGA -A--UU|UA( AGCA)UA-UC AAUAAG-C-G G-AGGAAA-- --AGAAACU( 541 UAC-A)AG-G AU|UCCCUUA GU---AAC(G GCGA)GCG-A A-----CCGG GAAC------ 601 ---------- ---------- ---------- ---------- -GGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------gcuu gagaaucugg 781 cgcc--(gcc g--)----cg ug-ccgaauu guagucugg- agaagcgucc uca------- 841 -----gcg-- ---------- ---------- ---------- ---------u ac-gg-uauc 901 gggaacaa-- --c-ucc-c( --(uggaa-- )-)ggg-c-- ---------- --------GC 961 --|C(GCA)G |AGGG-(UGA GACC)-CCCC gu|-ug-ugc ccggacccug u-----cgca 1021 ccac------ -gaggcgc-u gucggc---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GUU(----UG 1141 GGAA)UGCAG CCCCAA---- uaGGGC-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUC-- ---------- ---------- ---------- )CGU-CCAAG GCU----AAA 1381 UA-------- ---------- CGGGC-GAGA GACCGAUAGC AAAC-AAGUA CC(GCGA)G- 1441 G-GAAAGAUG -AAA-AGGAC UUU(ga-aa- )AGAG-AGUC A-AAGAGUGC U-UGAAAU-U 1501 GUCGG-GAG< gg-caaagcc gauggg---c c--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ----ggcgau gcgccccggu cgg--augug 2221 gaacggu(ca ca-)gccgg- uccgccgcu- -cgacucggg gcguggaccg uugcg|gauu 2281 gcggc-ggcg gccaaagcc- -cgggcug-- ---------- -----(ucga c)-------- 2341 ---------- --a-ugccg- -uggagacgu cg-ucga-cg cgaucauggc uggcagcgcg 2401 c---gcc(uu cg-)ggc--- cugc-(cucg -)-cgaccu- gcgugcuccu g--------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 guaa-cgg-- --------c- ugc-gggc-- uccccauucg >------GCC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UGACAUGUGU GCGAGUCa-a cgggu----( ------gauu 2641 aa)------- ---------- ---a-cccg- ---------- u-aaGGCGCA AG(GAAG)CU 2701 AA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------ugc gcgggau-cc c--------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----uuuac- ----)----- ---------- -------ggg -ugcaccgcc 3061 g--------- ---------- ---------- ---------- -------acc ga-ccu-uga 3121 uc-(--uucu -)-gagaa-- gggu-ucgag u]-------- ---------G UGAGCAUGC- 3181 -CUG-UCGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AG|C-GGGGC GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC CCG-CA---G CG-AUACUGA (CGUGCAAA) 3301 UCG-U-UCGU CUCACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC GUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGCUUGGA -GCC--c|-- -|-guga--- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------ac 3661 g-aguUCUAU -C|GGG--UA AA-GCCAAUG AUUAGAGGC- -----AUCGG GGCC--(gca 3721 a-c)--GCCC U-CGA-|CCU AUUC-UCAAA CUUUA-AAUA |GGUAGGacg -gcgcggcu( 3781 gcuuuguug) agccgcgc-c augg------ ---------- ---------- ---------- 3841 ---------- ---------- ----AAUcga g|AG-CUCCA -AGU-GGCAC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GAC UGAA)CCG-- GAAGCCG--- GGUUACG--G 3961 U|GCCC-AAC U-A--CG-CG CUAACcua-- --------ga acccac---- -AAAGGGUGU 4021 U--GGUCGAU UAAGACA-GC AGGACGGUGG UC(AUGG-AA GUC)GAAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-CGA AAA--UGGAU 4141 G--GCG-CU- UAAGCGCGU| G|-------- -uACCUAU-- --ACCCGGC| (- -----)ggcc ccgau-gAGU AGGA------ 4441 --GGG|-CG- CG-GC-GG-- --------U- -C-G-Cuc-- c------AAA ACCU------ 4501 G-GGC(GUGA -)GCCCGGG- CGG|A-GCG| G--CCGUCG- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GGCCGAAGA G-GGG|GAAG GUU|CCAUGU GA-ACG(-GC ACU)UG|CAC 4681 AUGGGUUAGU |-CGA-UCCU AAGA------ -------<-g acuggg(-ua ac)ccc--gu 4741 c--ugaua-- --cgcgu--- ---------- ---------- (cuc-----) ---------- 4801 --------gc gcgaacu--- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA AGGGA-AU-C GGG(UUAAAA UU-)CCUGA| -AC----cgg gacgugg-ug 4981 gu[ug----- ---------- ---------- ---------- -----ucg(- -gcaa--)cg 5041 u--------- ---------- ---------- ---------- -----ua-g] gga-guccgg 5101 agac-----g ucg--gcggg gg-g-cucg- -GG-AAGA(G UUAUCUUU-) UCUGUU-|UA 5161 A-cagccug- ---------- ccc|a----C CCUG--GAAA ---CGG(CUC AG-)CCGGA- 5221 GG-UA-GGG- uccag----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----cggc-u gGA-----AG 5341 AGCACCGCA( -cg-ucg-)C GUGGUGUA-c ggugcg---g ccccg---gc ggcC-CUUGA 5401 AAA-uccgga -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaccgag-- ---------- ----ug-cca -uuc-acg-- cc-cggUCGU 5581 A|CU--CAUA ACC(GCAUCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| GGUCG-||A- 5641 UG-G--AACA AU-GUAG-GC A-AGGGAAGU CGGCAA-AAU -GGAUCCGUA AC(UUCG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- -(-----)---- -------CUC AGAACU|G(- --GUA)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--UG G|UCC(---- 6661 cugc)GGA-- ---------- --U-GUUAAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uugaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU GUCUACUAUC 6901 CA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCC G---ACU-UU |GUGAAAUGA CUUGAGAGGU 7021 GUAGUAUAAG UGGGACUC-- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- --ACG)---- 7141 --------GC G-CGAAGUGA AA-UACCACU |ACUUUUAA- -CGUUA-UUU UACUUAu--- 7201 ---------- ---------| --a GACAU-UGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAAAGAUA AC-)GCAG-G U|G|U|CCU- AAGAU-GAGC |UC----GAG 7621 -A(ACA---- GAAA)UGU-G UGUGGA|AC( A|A--AAGG) G-AAAAG-CU C-GUUUGAUU 7681 -CUGAUUU(c c--aguac-- )GAAUACGAA CCGU(-GAAA )GCGUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -ACC-UUU(- -GGAA-U--U U---)----- ---------- 7861 -----AAA|G CUAGAG-gug uC|aGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GCcU|C|UUC 7981 CU|AUCA|UU G-CGAAG(CA -GA-)AUUCA CCAA-GUGU| UGGAU(UGUU C)ACCCACCA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-c<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->---aG UG-UC-GC-A AUAGUAAUUC AACC(UAGUA 8281 C(GAGA)GGA AC-)CGUUGA U|UCGCACAA UUGGUCAUCG CGC|-UUGGU U(GAAA)AGC 8341 CAGUGGCGCG A-AGCUACC- GU-GCGC--U GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCG-G GCUA--g--a aGCG--ACGC a<----ugcg cccgccgc-c cguuugccga 8461 cccgcagua- -ggggc(cuu --)gcccg-- aggggcacgu guc-guuggc uaa----guc 8521 -----gccgc gacggaagc- cg-c-aaggc -cgcuuu--g aa-uuacaau uucuaccga- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------g cggcggg--> --|------( ---)------ 8701 ---uagaauc |-uuug(-ca gacga)cu-u aaaua---cg c-g|acgggg uauuguaagu 8761 gg-cagagug gc----(cuu -gcu------ ---------- ---------- ---------- 8821 ----)----g ccacgauc-c ac-|ugagau u|cagc-gcu g--cgu-c-g cuu-cga-uu 8881 cgu--|---- ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS C.limon 9262 bp RNA RNA 11-JAN-191 DEFINITION Citrus limon. ACCESSION No information KEYWORDS No information. SOURCE Citrus limon. ORGANISM Citrus limon. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X05910 LOCUS CLIRRN26 3393 bp ds-DNA PLN 15-DEC-1988 DEFINITION Citrus limon cistron for 26S ribosomal RNA. ACCESSION X05910 ORGANISM Citrus limon Eukaryota; Planta; Spermatophyta; Magnoliopsida; Rosidae; Rutales; Rutaceae. BASE COUNT 778 a 882 c 1088 g 645 t 5869 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~ug )--cgacccc aggucagg-c gGG----AUU 481 AC|CCGCUGA -G--UU|UA( AGCA)UA-UC AAUAAG-C-G G-AGGAAA-- --AGAAACU( 541 UAC-C)AG-G AU|UCCCUUA GU---AAC(G GCGA)GCG-A A-----CCGG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------gcuu gaaaaucggg 781 cgcc--(ccc ---)---ggc gu-ccgaauu guagucugg- agaagcgucc uca------- 841 -----gcg-- ---------- ---------- ---------- ---------- gc-gg-accg 901 ggcc-caa-- --g-ucc-c( c-(uggaaa- )g)ggc-g-- ---------- --------GC 961 --|-(GGA)G |AGGG-(UGA GAGC)-CCCG UC|--g-cgc ccggacccug u-----cgca 1021 ccac------ -gaggcgc-u gucugc---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GUU(----UG 1141 GGAA)UGCGG CCCAAA---- ucGGGC-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUC-- ---------- ---------- ---------- )CGU-CCAAG GCU----AAA 1381 UA-------- ---------- CGGGC-GAGA GACCGAUAGC AAAC-AAGUA CC(GCGA)G- 1441 G-GAAAGAUG -AAA-AGGAC UUU(ga-aa- )AGAG-AGUC A-AAGAGUGC U-UGAAAU-U 1501 GUCGG-GAG< gg---aagcg gauggggg-c c--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ----ggcgau gcgccccggu cgg--augcg 2221 gaacggc(ga ga-)gccgg- uccgccgau- -cggcucggg gcgcggaccg augcg|gauu 2281 gcggc-ggcg gcccaagcc- -cgggccu-- ---------- -----(ucga u)-------- 2341 ---------- --aagccug- -uggagacgu cg-ucac-cg cgaucguggc uggcagcgcg 2401 c---gcc(uu cg-)ggc--- gugc-(uucg c)-gcaccu- gcgcgcuccc g--------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 gcau-cgg-- --------cc ugc-gggcu- cccccauucg >------GCC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UGACAUGUGU GCGAGUCa-a cgggc----( ------cagu 2641 aa)------- ---------- ---a-cccg- ---------- u-aaGGCGCA AG(GAAG)CU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------uug gcgggau-cc c--------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----ucgc-- ----)----- ---------- -------ggg -ugcaccgcc 3061 g--------- ---------- ---------- ---------- -------acc ga-ccu-uga 3121 uc-(--uucu -)-gagaa-- gggu-ucgag u]-------- ---------G UGAGCAUGC- 3181 -CUG-UCGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AG|C-GGGGC GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC CCG-CA---G CG-AUACUGA (CGUGCAAA) 3301 UCG-U-UCGU CUGACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC GUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGA -GCC--c|-- -|-gga---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- -------aac 3661 g-aguUCUAU -C|GGG--UA AA-GCCAAUG AUUAGAGGC- -----AUCGG GGGC--(gca 3721 a-c)--GCCC U-CGA-|CCU AUUC-UCAAA CUUUA-AAUA |GGUAGGacg -gcgcgguu( 3781 gcuucguug) agccgcgc-c acgg------ ---------- ---------- ---------- 3841 ---------- ---------- ----AAUcga g|UG-CUCCA -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- GAAGCCG--- GGUUACG--G 3961 U|GCCC-AAC U-G--CG-CG CUAACcua-- --------ga acccac---- -AAAGGGUGU 4021 U--GGUCGAU UAAGACA-GC AGGACGGUGG UC(AUGG-AA GUC)GAAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-CGA AAA--UGGAU 4141 G--GCG-CU- UAAGCGCGC| G|-------- --ACCUAU-- --ACCCGGC| (- -----)ggcc ccgau-gAGU AGGA------ 4441 --GGG|-GC- CG-GC-GG-- --------U- -C-G-Ccg-- c------AAA ACCC-----g 4501 G-GGC(GCGA -)GCCCGGG- CGG|A-GCG| G--CCGUCG- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GGCCGAAGA G-GGG|AAAG GUU|CCAUGU GA-ACG(-GC ACU)UG|CAC 4681 AUGGGUUAGU |-CGA-UCCU AAGA------ -------<-g acgggg(-ga ag)ccc--gu 4741 c--cgaca-- --gcgc---- ---------- ---------- (cacg----) ---------- 4801 ---------g cgcgagcu-- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA AGGGA-AU-C GGG(UUAAAA UU-)CCUGA| -AC----cgg gacgcgg-cg 4981 gc[ug----- ---------- ---------- ---------- -----acg(- -gcaa--)cg 5041 u--------- ---------- ---------- ---------- -----ua-g] gga-guccgg 5101 agac-----g ucg--gcggg gg-c-cucg- -GG-AAGA(G UUAUCUUU-) UCUGUU-|UA 5161 A-cggccug- ---------- ccc|a----C CCUG--GAAA ---CGG(CUC AG-)CCGGA- 5221 GG-UA-GGG- uccag----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----cggc-c gGA-----AG 5341 AGCACCGCA( -cg-ucg-)C GCGGUGUC-c ggugcg---c ccccg---gc ggcC-CUUGA 5401 AAA-uccgga -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaccgag-- ---------- ----ug-ccg -ccc-gcg-- cc-cggUCGU 5581 A|CU--CAUA ACC(GCAUCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| GGUCG-||A- 5641 UG-G--AACA AU-GUAG-GC A-AGGGAAGU CGGCAA-AAU -GGAUCCGUA AC(UUCG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- -(-----)---- -------CUC AGAACU|G(- --GUA)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--UG G|UCC(---- 6661 cugc)GGA-- ---------- --U-GCUCAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU GUCUACUAUC 6901 CA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCC G---ACU-UU |GUGAAAUGA CUUGAGAGGU 7021 GUAGUAUAAG UGGGAGCCg- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -GAAA)---- 7141 -------cGG C-GAAAGUGA AA-UACCACU |ACUUUUAA- -CGUUA-UUU UACUUAu--- 7201 ---------- ---------| --a GACAU-UGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAAAGAUA AC-)GCAG-G U|G|U|CCU- AAGAU-GAGC |UCAAC-GAG 7621 -A(ACA---- GAAA)UCUCG UGUGGA|AC( A|A--AAGG) GUAAAAG-CU C-GUUUGAUU 7681 -CUGAUUU(u c--aguac-- )GAAUACGAA CCGU(-GAAA )GCGUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -ACC-UUC(- -GGAA-U--U U---)----- ---------- 7861 -----GAA|G CUAGAG-gug uC|aGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GA-)AUUCA CCAA-GUGU| UGGAU(UGUU C)ACCCACCA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-c<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->---uG CG-UC-GU-A AUAGUAAUUC AACC(UAGUA 8281 C(GAGA)GGA AC-)CGUUGA U|UCGCACAA UUGGUCAUCG CGC|-UUGGU U(GAAA)AGC 8341 CAGUGGCGCG a-AGCUACC- GU-GCGC--U GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCG-G GCUA--gagc gACG-cGUGC G<-------- cccgccgc-c cguuugccga 8461 cccgcaguag -ggacc(ucc c-)ggucccc agaggcacgu guc-guaggc caa----gcc 8521 -cccgcggc( ggaagg)gc- cg-cggcggc -cgccuu--g aa-ucguaau ucccaucga- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------g cggcggg--> --|------( ---)------ 8701 ---uagaauc |cuuug(-ca gacga)cu-u aaaua---cg c-g|acgggg uauuguaagu 8761 gg-cagagug gc----(cuu -gcu------ ---------- ---------- ---------- 8821 ----)----g ccacgauc-c ac-|ugagau u|cagc-ccu g--ugu-c-g cuc-aga-uu 8881 cgu--|---- ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Ham.virgin 9262 bp RNA RNA 28-JAN-1997 DEFINITION Hamamelis virginiana (Hamamelidaceae); . ACCESSION AF036495 KEYWORDS . SOURCE Hamamelis virginiana (Hamamelidaceae). ORGANISM Hamamelis virginiana (Hamamelidaceae). REFERENCE 1 (bases 1 to 3366) AUTHORS Doug and Pam Soltis JOURNAL Mol. Biol. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 3366) AUTHORS Kuzoff,R.K., Sweere,J.A., Soltis,D.E., Soltis,P.S. and Zimmer,E.A. TITLE Direct Submission JOURNAL Submitted (03-DEC-1997) Botany, Washington State University, 324 Science Hall, Pullman, WA 99164-4238, USA STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF036495 BASE COUNT 784 a 857 c 1075 g 650 t 5896 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~cccc aggucagg-c gGG----ACU 481 AC|CCGCUGA -G--UU|UA( AGCA)UA-UC AAUAAG-C-G G-AGGAAA-- --AGAAACU( 541 UAC-A)AG-G AU|UCCCUUA GU---AAC(G GCGA)GCG-A A-----CCGG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------gcuu gaaaaucgag 781 cggc--(ccc g--)---c-c gu-ucgaauu guagucugg- agaagcgucc uca------- 841 -----gcg-- ---------- ---------- ---------- ---------- gc-gg-accg 901 ggcc-caa-- --g-ucc-c( c-(uggaag- )g)ggg-c-- ---------- --------GC 961 --|C(GGA)G |AGGG-(UGA GAGC)-CCCG UC|--g-ugc ccggacccug u-----cgca 1021 ccac------ -gaggcgc-u gucugc---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GUU(----UG 1141 GGAA)UACAG CCCCAA---- ucGGGC-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUC-- ---------- ---------- ---------- )CGU-CCAAG GCU----AAA 1381 UA-------- ---------- CGGGC-GAGA GACCGAUAGC AAAC-AAGUA CC(GCGA)G- 1441 G-GAAAGAUG -AAA-AGGAC UUU(ga-aa- )AGAG-AGUC A-AAGAGUGC U-UGAAAU-U 1501 GUCGG-GAG< gg---aagcg gauggggg-c c--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ----ggcgau gcgccccggu cgg--augug 2221 gaacggu(ga uga)gccgg- uccgccgau- -cgacucggg guguggaccg acgcg|gauu 2281 gcagc-ggcg acccaagcc- -cgggcug-- ---------- -----(ucga u)-------- 2341 ---------- --augcccg- -uggagacgu cg-uugc-ug cgaucgugga aggcagcgcg 2401 c---gcc(gu cac)ggc--- gugc-(cucg -)-gcaccu- gcgcgcuccu g--------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 gcgu-cgg-- --------cc ugc-gggc-- uccccauucg >------GCC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UGACAUGUGU GCGAGUCa-a cgggc----( ------caga 2641 aa)------- ---------- ---a-cccg- ---------- u-aaGGCGUA AG(GAAG)CU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------uug gcgggau-cc c--------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----ccugu- ----)----- ---------- -------ggg uugcaccgcc 3061 g--------- ---------- ---------- ---------- -------acc ga-ccu-uga 3121 uc-(--uucu -)-gugaa-- gggu-ucgag u]-------- ---------G AGAGCAUAC- 3181 -CUG-UCGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AG|C-GGGGC GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC CCG-CA---G CG-AUACUGA (CGUGCAAA) 3301 UCG-U-UCGU CUGACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGA -GCC--c|-- -|-gcg---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------gg 3661 cgaguUCUAU -C|GGG--UA AA-GCCAAUG AUUAGAGGC- -----AUCGG GGGC--(gca 3721 a-c)--GCCC U-CGA-|CCU AUUC-UCAAA CUUUA-AAUA |GGUAGGacg -gcgcggcu( 3781 gcucuauug) agccgcgc-c acgg------ ---------- ---------- ---------- 3841 ---------- ---------- ----AAUcga g|AG-CUCCA -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- GAAGCCG--- GGUUACG--G 3961 U|GCCC-AAC U-G--CG-CG CUAACcua-- --------ga acccac---- -AAAGGGUGU 4021 U--GGUCGAU UAAGACA-GC AGGACGGUGG UC(AUGG-AA GUC)GAAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-CGA AAA--UGGAU 4141 G--GCG-CU- GAAGCGCGC| G|-------- --ACCUAU-- --ACCCGGC| (- -----)ggcc ccgau-gAGU AGGA------ 4441 --GGG|-CG- CG-GC-GG-- --------U- -C-G-Cug-- c------AAA ACCU-----G 4501 G-GGC(GCGA -)ACCCGGG- CGG|A-GCG| G--CCGUCG- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GGCCGAAGA G-GGG|AAAG GUU|CCAUGU GA-ACG(-GC ACU)UG|CAC 4681 AUGGGUUAGU |-CGA-UCCU AAGA------ -------<-g acgggg(-ga ag)ccc--gu 4741 c--ugauag- --cgcgc--- ---------- ---------- (uca-----) ---------- 4801 --------gc gcgagcu--- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA AGGGA-AU-C GGG(UUAAAA UU-)CCUGA| -AC----cgg gacgcgg-cg 4981 gc[ug----- ---------- ---------- ---------- -----acg(- -gcaa--)cg 5041 u--------- ---------- ---------- ---------- -----ua-g] gga-guccgg 5101 agac-----g ucg--gcggg gg-c-cucg- -GG-AAGA(G UUAUCUUU-) UCUGUU-|UA 5161 A-cagccug- ---------- ccc|a----C CCUG--GAAA ---CGG(CUC AG-)CCGGA- 5221 GG-UA-GGG- uccag----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----cggc-u gGA-----AG 5341 AGCACCGCA( -cg-ucg-)C GUGGUGUC-c ggugcg---c ccccg---gc ggcC-CUUGA 5401 AAA-uccgga -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaccgag-- ---------- ----ug-ccg -acc-ucg-- cc-cgGUCGU 5581 A|CU--CAUA ACC(GCAUCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| GGUCG-||A- 5641 UG-G--AACA AU-GUAG-GC A-AGGGAAGU CGGCAA-AAU -GGAUCCGUA AC(CUCG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- -(-----)---- -------CUC AGAACU|G(- --GUA)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--UG G|UCC(---- 6661 cugc)GGA-- ---------- --U-GCUAAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU GUCUACUAUC 6901 CA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCC G---ACU-UU |GUGAAAUGA CUUGAGAGGU 7021 GUAGGAUAAG UGGGAGCcg- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -gaaa)---- 7141 -------cgG C-GAAAGUGA AA-UACCACU |ACUUUUAA- -CGUUA-UUU UACUUAu--- 7201 ---------- ---------| --a GACAU-UGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAAAGAUA AC-)GCAG-G U|G|U|CCU- AAGAU-GAGC |UCCAC-GAG 7621 -A(ACA---- GAAA)UCUCG UGUGGA|AC( A|A--AAGG) GUAAAAG-CU C-GUUUGAUU 7681 -CUGAUUU(c c--aguac-- )GAAUACGAA CCGU(-GAAA )GCGUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -acC-UUC(- -GGAA-U--U U---)----- ---------- 7861 -----GAA|G CUAGAG-gug uC|aGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GA-)AUUCA CCAA-GUGU| UGGAU(UGUU C)ACCCACCA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-C<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->---aG UG-UC-GC-G AUGGUAAUUC AACC(UAGUA 8281 C(GAGA)GGA AC-)CGUUGA U|UCGCACAA UUGGUCAUCG CGC|-UUGGU U(GAAA)AGC 8341 CAGUGGCGCG A-AGCUACC- GU-GCGC--U GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCG-G GCCA--g--a aGCG--ACGC a<----uacg cccgccgc-c cgauugccga 8461 ccugcaguag -gggcc(cuc g-)ggccccc aaaggcacgu guc-guuggu gaa----gcc 8521 -cucgcggc( ggacga)gc- cg-gcgcggc -cgccuu--g aa-uuauaau ucccaccga- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------g cggcggg--> --|------( ---)------ 8701 ---uugaauc |cuuug(-ca gacga)cu-u aaaua---cg c-g|acggug uauuguaagu 8761 gg-cagagug gc----(cuu -guu------ ---------- ---------- ---------- 8821 ----)----g ccacgauc-c ac-|uga~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Jep.parryi 9262 bp RNA RNA 28-JAN-1997 DEFINITION Jepsonia parryi (Saxifragaceae); . ACCESSION AF036497 KEYWORDS . SOURCE Jepsonia parryi (Saxifragaceae). ORGANISM Jepsonia parryi (Saxifragaceae). REFERENCE 1 (bases 1 to 3366) AUTHORS Doug and Pam Soltis TITLE Plants JOURNAL Mol. Biol. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 3366) AUTHORS Kuzoff,R.K., Sweere,J.A., Soltis,D.E., Soltis,P.S. and Zimmer,E.A. TITLE Direct Submission JOURNAL Submitted (03-DEC-1997) Botany, Washington State University, 324 Science Hall, Pullman, WA 99164-4238, USA STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF036497 BASE COUNT 795 a 840 c 1062 g 669 t 5896 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~cccc aggucagg-c gGG----AUU 481 AC|CCGCUGA -G--UU|UA( AGCA)UA-UC AAUAAG-C-G G-AGGAAA-- --AGAAACU( 541 UAC-A)AG-G AU|UCCCUUA GU---AAC(G GCGA)GCG-A A-----CCGG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------gcuu guaaaucagg 781 cgau--(ccc g--)---u-c gu-cugaauu guagucugg- agaagcgucc uca------- 841 -----gcg-- ---------- ---------- ---------- ---------- gc-gg-accg 901 ggcc-caa-- --g-ucc-c( c-(uggaag- )g)ggg-c-- ---------- --------GC 961 --|C(GGA)G |AGGG-(UGA GAGC)UCCCG UC|--g-ugc ccggacccug u-----cgca 1021 ccac------ -gaggcgc-u gucgac---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GUU(----UG 1141 GGAA)UGCAG CCCCAA---- ucGGGC-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUC-- ---------- ---------- ---------- )CGU-CCAAG GCU----AAA 1381 UA-------- ---------- CGGGC-GAGA GACCGAUAGC AAAC-AAGUA CC(GCGA)G- 1441 G-GAAAGAUG -AAA-AGGAC UUU(ga-aa- )AGAG-AGUC A-AAGAGUGC U-UGAAAU-U 1501 GUCGG-GAG< gg---aagcg gauggggg-c u--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ----ggcgau gcgccccggc cgg--augcg 2221 gaacggu(ga ga-)accgg- ucugccgau- -cggcucggg gcguggaccg augcg|gauu 2281 guagu-ggcg acccaagcc- -ugggaug-- ---------- -----(caga u)-------- 2341 ---------- --auucucg- -cggacacgu cg-ucgc-ug cgauugugga aggcagcgcg 2401 c---gcc(cu cga)ggc--- gugc-(uucg -)-gcaucu- gcgcgcuccu g--------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 gcgu-cgg-- --------cc ugc-gagc-- uccccauucg >------GCC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UGACAUGUGU GCGAGUCa-a cgggc----( ------cagu 2641 aa)------- ---------- ---a-cccg- ---------- u-aaGGCGCA AG(GAAG)CU 2701 AA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------uug gcgggau-cc c--------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----ccuga- ----)----- ---------- -------ggg uugcaccgca 3061 g--------- ---------- ---------- ---------- -------acc ga-ccu-uga 3121 uc-(--uucu -)-gugaa-- gggu-ucgag u]-------- ---------G AGAGCAUAC- 3181 -CUG-UCGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AG|C-GGGGC GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC CCG-CA---G CG-AUACUGA (CGUGCAAA) 3301 UCG-U-UCGU CUGACUUGGG UAUAGGG--C C--------- ---------- ---(GAUA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGA -GCC--c|-- -|-acg---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------ug 3661 cgaguUCUAU -C|GGG--UA AA-GCCAAUG AUUAGAGGC- -----AUCGG GGGC--(gca 3721 a-c)--GCCC U-CGA-|CCU AUUC-UCAAA CUUUA-AAUA |GGUAGGacg -gugcggcu( 3781 gcuuuauug) agccgcgc-c aagg------ ---------- ---------- ---------- 3841 ---------- ---------- ----AAUcga g|AG-CUCCA -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- GAAGCCG--- GGUUACG--G 3961 U|GCCC-AAC U-G--UG-CG CUAACcua-- --------ga acccac---- -AAAGGGUGU 4021 U--GGUCGAU UAAGACA-GC AGGACGGUGG UC(AUGG-AA GUC)GAAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-CGA AAA--UGGAU 4141 G--GCG-CU- UAAGCGCGC| G|-------- --ACCUAU-- --ACCCGGC| (- -----)gguc ccgau-gAGU AGGA------ 4441 --GGG|-CG- CG-GC-GG-- --------U- -C-G-Cug-- c------AAA ACCC-----A 4501 G-GGC(GCGA -)GCCCGGG- CGG|A-GCG| G--CCGUCG- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GGCCGAAGA G-GGG|AAAG GUU|CCAUGU GA-ACG(-GC ACU)UG|CAC 4681 AUGGGUUAGU |-CGA-UCCU AAGA------ -------<-g acgggg(-ga ag)ccu--gu 4741 c--ugauag- --cgcgc--- ---------- ---------- (cga-----) ---------- 4801 --------gc gcgagcu--- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA AGGGA-AU-C GGG(UUAAAA UU-)CCUGA| -AC----cgg gacgugg-cg 4981 gc[ug----- ---------- ---------- ---------- -----acg(- -gcaa--)cg 5041 u--------- ---------- ---------- ---------- -----ua-g] gga-guccgg 5101 agac-----a ucg--gcggg gg-c-cucg- -GG-AAGA(G UUAUCUUU-) UCUGUU-|UA 5161 A-cagccug- ---------- ccc|a----C CCUG--GAAA ---CGG(CUC AG-)CCGGA- 5221 GG-UA-GGG- uccag----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----cggc-u gGA-----AG 5341 AGCACCGCA( -cg-ucg-)C GUGGUGUC-c ggugcg---c ccccg---gc ggcC-CUUGA 5401 AAA-uccgga -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaccgag-- ---------- ----ug-ccg -acc-acg-- cc-cgGUCGU 5581 A|CU--CAUA ACC(GCAUCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| GGUCG-||A- 5641 UG-G--AACA AU-GUAG-GC A-AGGGAAAU CGGCCA-AAU -GGAUCCGUA AC(UUCG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- -(-----)---- -------CUC AGAACU|G(- --GUA)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--UG G|UCC(---- 6661 cugc)GGA-- ---------- --U-GCUAAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCCCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU GUCUACUAUC 6901 CA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCC G---ACU-UU |GUGAAAUGA CUUGAGAGGU 7021 GUAGGAUAAG UGGGAGCcg- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -gcaa)---- 7141 -------cgG C-GAAAGUGA AA-UACCACU |ACUUUUAA- -CGUUA-UUU UACUUAu--- 7201 ---------- ---------| --a GACAU-UGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAAAGAUA AC-)GCAG-G U|G|U|CCU- AAGAU-GAGC |UCAAC-GAG 7621 -A(ACA---- GAAA)UCUCG UGUGGA|AC( A|A--AAGG) GUAAAAG-CU C-GUUUGAUU 7681 -CUGAUUU(c c--aguac-- )GAAUACGAA CCGU(-GAAA )GCGUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -acC-UUC(- -GGAA-U--U U---)----- ---------- 7861 -----GAA|G CUAGAG-gug uC|aGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GA-)AUUCA CCAA-GUGU| UGGAU(UGUU C)ACCCACCA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-U<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->---aG UG-UC-GC-G AUGGUAAUUC AACC(UAGUA 8281 C(GAGA)GGA AC-)CGUUGA U|UCGCACAA UUGGUCAUCG CGC|-UUGGU U(GAAA)AGC 8341 CAGUGGCGCG A-AGCUACC- GU-GCGC--U GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCG-G GCCA--g--a aGCG--AUGC g<----ugcg cccgucgc-c cgauugccga 8461 ccugcaguag -gggcc(ucu u-)ggccccc aaaggcucgc guc-guugg- ucag---gcc 8521 -cccguggu( ggacaa)gc- ca-cgagggc -cgccau--g aa-guguaau ucccuccga- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------g cggcggg--> --|------( ---)------ 8701 ---uagaauc |cuuug(-ca gacga)cu-u aaaua---cg c-g|acgggg uauuguaagu 8761 gg-cagagug gc----(cuu -guu------ ---------- ---------- ---------- 8821 ----)----g ccacgauc-c ac-|uga~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Lit.trifol 9262 bp RNA RNA 28-JAN-1997 DEFINITION Lithophragma trifoliatum (Saxifragaceae); . ACCESSION AF036501 KEYWORDS . SOURCE Lithophragma trifoliatum (Saxifragaceae). ORGANISM Lithophragma trifoliatum (Saxifragaceae). REFERENCE 1 (bases 1 to 3368) AUTHORS Doug and Pam Soltis JOURNAL Mol. Biol. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 3368) AUTHORS Kuzoff,R.K., Sweere,J.A., Soltis,D.E., Soltis,P.S. and Zimmer,E.A. TITLE Direct Submission JOURNAL Submitted (03-DEC-1997) Botany, Washington State University, 324 Science Hall, Pullman, WA 99164-4238, USA STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF036501 BASE COUNT 795 a 825 c 1058 g 690 t 5894 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~cccc aggucagg-c gGG----AUU 481 AC|CCGCUGA -G--UU|UA( AGCA)UA-UC AAUAAG-CaG G-AGGAAA-- --AGAAACU( 541 UAC-A)AG-G AU|UCCCUUA GU---AAC(G GCGA)GCG-A A-----CCGG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------gcuu guaaaucagg 781 cgau--(cuc g--)---u-c gu-cugaauu guagucugg- agaagcgucc uca------- 841 -----gcg-- ---------- ---------- ---------- ---------- gc-gg-accg 901 ggcc-caa-- --g-ucc-c( c-(uggaag- )g)ggg-c-- ---------- --------GC 961 --|C(GGA)G |AGGG-(UGA GAGC)-CCCG UC|--g-ugc ccggacccug u-----cgca 1021 ccac------ -gaggcgc-u gucgac---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GUU(----UG 1141 GGAA)UGCAG CCCCAA---- ucGGGC-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUC-- ---------- ---------- ---------- )CGU-CCAAG GCU----AAA 1381 UA-------- ---------- CGGGU-GAGA GACCGAUAGC AAAC-AAGUA CC(GCGA)G- 1441 G-GAAAGAUG -AAA-AGGAC UUU(ga-aa- )AGAG-AGUC A-AAGAGUGC U-UGAAAU-U 1501 GUCGG-GAG< gg---aaacg gauggggg-c c--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ----ggcgau gcgccccggu cgg--augug 2221 gaacggu(ga ga-)accgg- ucugccgau- -cggcucggg guguggaccg augcg|gauu 2281 gcggc-ggcg acccaagcc- -cgggaug-- ---------- -----(uugu u)-------- 2341 ---------- --auucccg- -uggauacgu cg-uugc-ug cgauuguggu aggcagcgcg 2401 c---gcc(uu cu-)ggc--- gugc-(cucg -)-gcaucu- gcgcgcuccu g--------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 gugu-cgg-- --------cc ugc-gggc-- uccccauucg >------GCC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UGACAUGUGU GCGAGUCa-a cgggc----( ------uagu 2641 aa)------- ---------- ---a-cccg- ---------- u-aaGGCGUA AG(GAAG)CU 2701 AA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------uug gugggau-cc c--------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----cuugu- ----)----- ---------- -------ggg uugcaccgcc 3061 g--------- ---------- ---------- ---------- -------acc ga-ccu-uga 3121 uc-(--uucu -)-gugaa-- gggu-ucgag u]-------- ---------G AGAGCAUAC- 3181 -CUG-UCGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AG|C-GGGGC GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC CCG-CA---G CG-AUACUGA (CGUGCAAA) 3301 UCG-U-UCGU CUGACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGA -GCC--c|-- -|-acg---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------ug 3661 cgaguUCUAU -C|GGG--UA AA-GCCAAUG AUUAGAGGC- -----AUCGG GGGC--(gca 3721 a-c)--GCCC U-CGA-|CCU AUUC-UCAAA CUUUA-AAUA |GGUAGGacg agcgcggcu( 3781 gcuuuauug) agccgcgc-c aagg------ ---------- ---------- ---------- 3841 ---------- ---------- ----AAUcga g|AG-CUCCA -AGU-GGGCC -AUUcUUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- GAAGCCG--- GGUUACG--G 3961 U|GCCC-AAC U-G--CG-CG CUAACcua-- --------ga acccac---- -AAAGGGUGU 4021 U--GGUCGAU UAAGACA-GC AGGACGGUGG UC(AUGG-AA GUC)GAAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-CGA AAA--UGGAU 4141 G--GCG-CU- AAAGCGCGC| G|-------- --ACCUAU-- --ACCCGGC| (- -----)ggcc cugau-gAGU AGGA------ 4441 --GGG|-CG- CG-GC-GG-- --------U- -C-G-Cug-- c------AAA ACCU-----G 4501 G-GGC(GCGA -)GCCCGGG- CGG|A-GCG| G--CCGUCG- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GGCCGAAGA G-GGG|AAAG GUU|CCAUGU GA-ACG(-GC ACU)UG|CAC 4681 AUGGGUUAGU |-CGA-UCCU AAGA------ -------<-g acgggg(-ga ag)ccu--gu 4741 c--ugauag- --cgcgc--- ---------- ---------- (uca-----) ---------- 4801 --------gc gcgagcu--- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA AGGGA-AU-C GGG(UUAAAA UU-)CCUGA| -AC----cgg gacgugg-cg 4981 gc[ug----- ---------- ---------- ---------- -----acg(- -gcaa--)cg 5041 u--------- ---------- ---------- ---------- -----ua-g] gga-guccgg 5101 agac-----g ucg--gcggg gg-c-cucg- -GG-AAGA(G UUAUCUUU-) UCUGUU-|UA 5161 A-cagccug- ---------- ccc|a----C CCUG--GAAA ---CGG(CUC AG-)CCGGA- 5221 GG-UA-GGG- uccag----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----cggc-u gGA-----AG 5341 AGCACCGCA( -cg-ucg-)C GUGGUGUC-c ggugcg---c ccccg---cc ggcC-CUUGA 5401 AAA-uccgga -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaccgag-- ---------- ----ug-ccg -acc-acg-- cc-cgGUCGU 5581 A|CU--CAUA ACC(ACAUCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| GGUCG-||A- 5641 UG-G--AACA AU-GUAG-UC A-AGGGAAGU CGGCCA-AAU -GGAUCCGUA AC(UUCG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- -(-----)---- -------CUC AGAACU|G(- --GUA)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--UG G|UCC(---- 6661 cugc)GGA-- ---------- --U-GCUCAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU GUCUACUAUC 6901 CA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG CGGUGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCUa|AGUCC G---ACU-UU |GUGAAAUGA CUUGAGAGGU 7021 GUAGGAUAAG UGGGAGCcg- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -gcaa)---- 7141 -------cgG C-GAAAGUGA AA-UACCACU |ACUUUUAA- -CGUUA-UUU UACUUAu--- 7201 ---------- ---------| --a GACAU-UGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAAAGAUA AC-)GCAG-G U|G|U|CCU- AAGAU-GAGC |UCAAC-GAG 7621 -A(ACA---- GAAA)UCUCG UGUGGA|AC( A|A--AAGG) GUAAAAG-CU C-GUUUGAUU 7681 -CUGAUUU(c c--aguac-- )GAAUACGAA CCGU(-GAAA )GCGUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -acC-UUC(- -GGAA-U--U U---)----- ---------- 7861 -----GAA|G CUAGAG-gug uC|aGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GA-)AUUCA CCAA-GUGU| UGGAU(UGUU C)ACCCACCA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-U<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->---aG UG-UC-GC-A AUGGUAAUUC AACC(UAGUA 8281 C(GAGA)GGA AC-)CGUUGA U|UCGCACAA UUGGUCAUCG CGC|-UUGGU U(GAAA)AGC 8341 CAGUGGCGCG A-AGCUACC- GU-GCGC--U GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCG-G GCCA--g--a aGCG--ACGC g<----ugcg cccgucgc-c cgauugccga 8461 ccugcaguag -ggguc(uuu u-)ggccccc aaaggcacgu guc-guuggu gaa----gcc 8521 -cuugcggc( gaacaa)gc- cg-ugagggc -cgccuu--g aa-guauaau ucccaccga- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------g cggcggg--> --|------( ---)------ 8701 ---uagaauc |cuuug(-ca gacga)cu-u aaaua---cg c-g|acgggg uauuguaagu 8761 gg-cagagug gc----(cuu -guu------ ---------- ---------- ---------- 8821 ----)----g ccacgauc-c ac-|uga~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS M.pentandr 9262 bp RNA RNA 28-JAN-1997 DEFINITION Mitella pentandra (Saxifragaceae); . ACCESSION AF036502 KEYWORDS . SOURCE Mitella pentandra (Saxifragaceae). ORGANISM Mitella pentandra (Saxifragaceae). REFERENCE 1 (bases 1 to 3366) AUTHORS Doug and Pam Soltis JOURNAL Mol. Biol. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 3366) AUTHORS Kuzoff,R.K., Sweere,J.A., Soltis,D.E., Soltis,P.S. and Zimmer,E.A. TITLE Direct Submission JOURNAL Submitted (03-DEC-1997) Botany, Washington State University, 324 Science Hall, Pullman, WA 99164-4238, USA STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF036502 BASE COUNT 789 a 825 c 1062 g 690 t 5896 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~cccc aggucagg-c gGG----AUU 481 AC|CCGCUGA -G--UU|UA( AGCA)UA-UC AAUAAG-C-G G-AGGAAA-- --AGAAACU( 541 UAC-A)AG-G AU|UCCCUUA GU---AAC(G GCGA)GCG-A A-----CCGG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------gcuu guaaaucagg 781 cgau--(cuc g--)---u-c gu-cugaauu guagucugg- agaagcgucc uca------- 841 -----gcg-- ---------- ---------- ---------- ---------- ac-gg-accg 901 ggcc-caa-- --g-ucc-c( c-(uggaag- )g)ggg-c-- ---------- --------GC 961 --|C(GGA)G |AGGG-(UGA GAGC)-CCCG UC|--g-ugc ccggacccug u-----cgca 1021 ccac------ -gaggcgc-u gucgac---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GUU(----UG 1141 GGAA)UGCAG CCCCAA---- ucGGGC-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUC-- ---------- ---------- ---------- )CGU-CCAAG GCU----AAA 1381 UA-------- ---------- CGGGU-GAGA GACCGAUAGC AAAC-AAGUA CC(GCGA)G- 1441 G-GAAAGAUG -AAA-AGGAC UUU(ga-aa- )AGAG-AGUC A-CAGAGUGC U-UGAAAU-U 1501 GUCGG-GAG< gg---aagcg gauggggu-c c--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ----ggcgau gcgccccggu cgg--augug 2221 gagcggu(ga ga-)accgg- ucugccgau- -cggcucggg guguggaccg augcg|gauu 2281 gcggc-ggcg acccaagcc- -cgggaug-- ---------- -----(uugu u)-------- 2341 ---------- --auucucg- -uggauacgu cg-uugc-cg cgauuguggu aggcagcgcg 2401 c---gcc(uu cu-)ggc--- gugc-(cucg -)-gcaucu- gcgcgcuccu g--------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 gugu-cgg-- --------cc ugu-gggc-- uccccauucg >------GCC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UGACAUGUGU GCGAGUCa-a cgggc----( ------uagu 2641 aa)------- ---------- ---a-cccg- ---------- u-aaGGCGUA AG(GAAG)CU 2701 AA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------uug gugggau-cc c--------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----cuugu- ----)----- ---------- -------ggg uugcaccgcc 3061 g--------- ---------- ---------- ---------- -------acc ga-ccu-uga 3121 uc-(--uucu -)-gugaa-- gggu-ucgag u]-------- ---------G AGAGCAUAC- 3181 -CUG-UCGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AG|C-GGGGC GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC CCG-CA---G CG-AUACUGA (CGUGCAAA) 3301 UCG-U-UCGU CUGACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGA -GCC--c|-- -|-acg---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------ug 3661 cgaguUCUAU -C|GGG--UA AA-GCCAAUG AUUAGAGGC- -----AUCGG GGGC--(gca 3721 a-c)--GCCC U-CGA-|CCU AUUC-UCAAA CUUUA-AAUA |GGUAGGacg -gcgcggcu( 3781 gcuuuauug) agccgcgc-c aagg------ ---------- ---------- ---------- 3841 ---------- ---------- ----AAUcga g|AG-CUCCA -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- GAAGCCG--- GGUUACG--G 3961 U|GCCC-AAC U-G--CG-CG CUAACcua-- --------ga acccac---- -AAAGGGUGU 4021 U--GGUCGAU UAAGACA-GC AGGACGGUGG UC(AUGG-AA GUC)GAAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-CGA AAA--UGGAU 4141 G--GCG-CU- AAAGCGCGC| G|-------- --ACCUAU-- --ACCCGGC| (- -----)ggcc ccgau-gAGU AGGA------ 4441 --GGG|-CG- CG-GC-GG-- --------U- -C-G-Ucu-- g------CAA AACC----UG 4501 G-GGC(GCGA -)GCCCGGG- CGG|A-GCG| G--CCGUCG- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GGCCGAAGA G-GGG|AAAG GUU|CCAUGU GA-ACG(-GC ACU)UG|CAC 4681 AUGGGUUAGU |-CGA-UCCU AAGA------ -------<-g acgggg(-ga ag)ccu--gu 4741 c--ugauag- --cgcgc--- ---------- ---------- (uca-----) ---------- 4801 --------gc gcgagcu--- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA AGGGA-AU-C GGG(UUAAAA UU-)CCUGA| -AC----cgg gacgugg-cg 4981 gc[ug----- ---------- ---------- ---------- -----acg(- -gcaa--)cg 5041 u--------- ---------- ---------- ---------- -----ua-g] gga-guccgg 5101 agac-----g ucg--gcggg gg-c-cucg- -GG-AAGA(G UUAUCUUU-) UCUGUU-|UA 5161 A-cagccug- ---------- ccc|a----C CCUG--GAAA ---CGG(CUC AG-)CCGGA- 5221 GG-UA-GGG- uccag----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----cggc-u gGA-----AG 5341 AGCACCGCA( -cg-ucg-)C GUGGUGUC-c ggugcg---c ccccg---gc ggcC-CUUGA 5401 AAA-uccgga -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaccgag-- ---------- ----ug-ccg -acc-acg-- cc-cgGUCGU 5581 A|CU--CAUA ACC(GCAUCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| GGUCG-||A- 5641 UG-G--AACA AU-GUAG-GC A-AGGGAAGU CGGCAA-AAU -GGAUCCGUA AC(UUCG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- -(-----)---- -------CUC AGAACU|G(- --GUA)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--UG G|UCC(---- 6661 cugc)GGA-- ---------- --U-GCUCAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGUgCCCU GUCUACUAUC 6901 CA|GCGAAAC C|aca-gCCA Ag(GGAG-CG GC)CUUGACA -G-AAU-CAU CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCC G---ACU-UU |GUGAAAUGA CUUGAGAGGU 7021 GUAGGAUAAG UGGGAGCcg- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -gcaa)---- 7141 -------cgG C-GAAAGUGA AA-UACCACU |ACUUUUAA- -CGUUA-UUU UACUUAu--- 7201 ---------- ---------| --a GACAU-UGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAAAGAUA AC-)GCAG-G U|G|U|CCU- AAGAU-GAGC |UCAAC-GAG 7621 -A(ACA---- GAAA)UCUCG UGUGGA|AC( A|A--AAGG) GUAAAAG-CU C-GUUUGAUU 7681 -CUGAUUU(c c--aguac-- )GAAUACGAA CCGU(-GAAA )GCGUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -acC-UUC(- -GGAA-U--U U---)----- ---------- 7861 -----GAA|G CUAGAG-GUG UC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GA-)AUUCA CCAA-GUGU| UGGAU(UGUU C)ACCCACCA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-U<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->---aG UG-UC-GC-A AUGGUAAUUC AACC(UAGUA 8281 C(GAGA)GGA AC-)CGUUGA U|UCGCACAA UUGGUCAUCG CGC|-UUGGU U(GAAA)AGC 8341 CAGUGGCGCG A-AGCUACC- GU-GCGC--U GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCG-G GCCA--g--a aGCG--ACGC g<----ugcg cccgucgc-c cgauugccga 8461 ccugcaguag -ggguc(uuu u-)ggccccc aaaggcacgu guc-guuggu gaa----gcc 8521 -cuugcggc( gaacaa)gc- cg-cgagggc -cgccuu--g aa-guauaau ucccaccga- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------g cggcggg--> --|------( ---)------ 8701 ---uagaauc |cuuug(-ca gacga)cu-u aaaua---cg c-g|acgggg uauuguaagu 8761 gg-cagagug gc----(cuu -guu------ ---------- ---------- ---------- 8821 ----)----g ccacgauc-c ac-|uga~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS P.fimbriat 9262 bp RNA RNA 28-JAN-1997 DEFINITION Parnassia fimbriata (Parnassiaceae); . ACCESSION AF036496 KEYWORDS . SOURCE Parnassia fimbriata (Parnassiaceae). ORGANISM Parnassia fimbriata (Parnassiaceae). REFERENCE 1 (bases 1 to 3377) AUTHORS Doug and Pam Soltis TITLE The Phylogenetic Potential of Entire 26S rDNA Sequences in JOURNAL Mol. Biol. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 3377) AUTHORS Kuzoff,R.K., Sweere,J.A., Soltis,D.E., Soltis,P.S. and Zimmer,E.A. TITLE Direct Submission JOURNAL Submitted (03-DEC-1997) Botany, Washington State University, 324 Science Hall, Pullman, WA 99164-4238, USA STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF036496 BASE COUNT 827 a 782 c 1046 g 722 t 5885 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~cccc aggucagg-c gGG----AAC 481 AC|CUGCUGA -G--UU|UA( AGCA)UA-UC AAUAAG-C-A G-AGGAAA-- --AGAAACU( 541 UAC-G)AG-G AU|UCCCUUA GU---AAC(G GCGA)GCG-A A-----CCGG GAAU------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------gaau gaaaaucgau 781 cgcc--(cuu g--)---g-c gu-ucgaauu guagucuga- aaaagugucc uca------- 841 -----gcg-- ---------- ---------- ---------- ---------- gc-gg-acca 901 ggcc-caa-- --g--uc-c( c-(uuggaa- )g)ggggu-- ---------- --------GC 961 --|C(AGA)G |AGGG-(UGA GAGC)-CCCG UU|--g-ugc ccggacccug u-----cgca 1021 ccac------ -gaggcac-u guuggc---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GUU(----UG 1141 GGAA)UGCAG CCCUAA---- ucGGGC-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUC-- ---------- ---------- ---------- )CGU-CCAAG GCU----AAA 1381 UA-------- ---------- UGGGC-GAGA GACCGAUAGC GAAC-AAGUA CC(GCGA)G- 1441 G-GAAAGAUG -AAA-AGGAC UUU(ga-aa- )AGAG-AGUC A-AAGAGUGC U-UGAAAU-U 1501 GUCGG-GAG< gg---aagcg aauggggg-u c--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ----ggcgau acaccucggu cgg--acgug 2221 gaacggc(ga aa-)gcugg- ucugcugau- -cggcucgug guguggaucg augug|gauc 2281 acgcc-ggcg accuaagcc- -cgggcuu-- ---------- -----(uuga u)-------- 2341 ---------- --ucguccg- -uggaaaugu ug-uugu-cg ggaucgugga uagcagcgug 2401 c---gcc(ac uaa)ggc--- gugc-(cuuu g)-gcacgu- gcgcgcuccu g--------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ucgu-cgg-- --------cc ugu-ggac-- uccccauucg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UGACAUGUGU GCGAGUCa-a cgagu----( ------gagu 2641 ua)------- ---------- --aa-cucg- ---------- u-aaGGCGAA AG(GAAG)CU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------cug gcgggau-cc cuccu----- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----ucgac- ----)----- ---------- ---agggggg uugcaccguc 3061 g--------- ---------- ---------- ---------- -------acc aa-ccu-uga 3121 uc-(--uucu -)-gagaa-- gggu-uugag u]-------- ---------G AGAGCAUGC- 3181 -CUG-UCGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AG|C-GGGGU GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC CCG-AA---G CG-AUACUGA (CGUGCAAA) 3301 UCG-U-UCGU CUGACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGA -GC---c|-- -|-gga---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------u 3661 cgaguUCUAU -C|GGG--UA AA-GCCAAUG AUUAGAGGC- -----AUCGG GGGC--(gca 3721 a-u)--GCCC U-CGA-|CCU AUUC-UCAAA CUUUA-AAUA |GGUAGGaug -gugcggcu( 3781 gcuuugaug) agccgccc-c acgg------ ---------- ---------- ---------- 3841 ---------- ---------- ----AAUcga g|AG-CUCCA -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- GAAGUCG--- GGUUACG--G 3961 U|GCCC-AAC U-G--UG-CG CUAACcua-- --------ga acccac---- -AAAGGGUGU 4021 U--GGUCGAU UAAGACA-GC AGGACGGUGG UC(AUGG-AA GUC)GAAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-CGA AAA--UGGAU 4141 G--GCG-CU- UAAGCGCGU| G|-------- --ACCUAU-- --ACCUGGC| (- -----)ggcu ccgau-gAGU AGGA------ 4441 --GGG|-CG- UG-GC-AG-- --------U- -U-G-Cug-- c------AAA ACCC-----G 4501 G-GGC(GCGA -)GCUAGGG- CGG|A-GCG| G--CUGUCA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GGCCGAAGA G-GGG|AAAG GUU|CCAUGU GA-ACG(-GC ACU)UG|CAC 4681 AUGGGUUAGU |-CGA-UCCU AAGA------ -------<-g ucgggg(-ga ag)ccc--gu 4741 c--cgauag- --ugccu--- ---------- ---------- (guag----) ---------- 4801 --------gc acgagcu--- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA AGGGA-AU-C GGG(UUAAAA UU-)CCUGA| -AC----cgg gacgugg-ug 4981 gc[ug----- ---------- ---------- ---------- -----acg(- -gcaa--)cg 5041 u--------- ---------- ---------- ---------- -----ua-g] gga-gucugg 5101 agac-----g ucg--gcggg gg-c-cucg- -GG-AAGA(G UUAUCUUU-) UCUGUU-|UA 5161 A-cagucug- ---------- ccc|a----C CCUG--GAAA ---CGG(CUC AG-)CCGGA- 5221 GG-UA-GGG- uccag----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----cgac-u gGA-----AG 5341 AGCACCGCA( -cg-ucg-)C GUGGUGUC-c ggugcg---c cccug---gc ggcC-CAUGA 5401 AAA-uccgga -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaccgag-- ---------- ----ug-ccu -ccc-acg-- cc-cgGUCGU 5581 A|CU--CAUA ACC(GCAUCA )GG|UCU-CC AAGGU(GAAC A)ACCUCU-| GGUCG-||A- 5641 UG-G--AACA AU-GUAG-CC A-AGGGAAGU CGGCAA-AAU -GGAUCCGUA AC(CUCG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- -(-----)---- -------CUC AGAACU|G(- --GUA)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--UG G|UCC(---- 6661 uugc)GGA-- ---------- --U-GAUUAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU GUCUACUAUC 6901 CA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCG -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCC G---ACU-UU |GUGAAAUGA CUUGAGAGGU 7021 GUAGAAUAAG UGGGAGUcg- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -gaaa)---- 7141 -------cgG C-AACGGUGA AA-UACCACU |ACUUUUAA- -CGUUA-UUU UACUUAu--- 7201 ---------- ---------| --a GACAU-UGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAAAGAUA AC-)GCAG-G U|G|U|CCU- AAGAU-GAGC |UCAAC-GAG 7621 -A(ACA---- GAAA)UCUCG UGUUGA|AC( A|A--AAGG) GUAAAAG-CU C-GUUUGAUU 7681 -UUGAUUU(c c--aguac-- )GAAUACGAA CCGU(-GAAA )GCGUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -acC-UUC(- -GGAA-U--U U---)----- ---------- 7861 -----GAA|G CUAGAG-GUG UC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GA-)AUUCA CCAA-GUGU| UGGAU(UGUU C)ACCCACCA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-U<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->---uG CA-UC-GC-A AUAGUAAUUC AACC(UAGUA 8281 C(GAGA)GGA AC-)CGUUGA U|UCGCACAA UUGGUCAUUG CGC|-UUGGU U(GAAA)AGC 8341 CAGUGGCGCG A-AGCUACC- GG-GCGU--U GGAUUAUGAC U(GAACGGCU C-U-A)AGUC 8401 AGAAUCCG-G GCUA--g--a cGCG--AAGC g<----aaug cucgucgc-u ugauuuucga 8461 ccagcaguag -gggcc(uca u-)ggcuccc aaaggcacau guc-guugga cca----gcu 8521 -ugccgagc( gaaaac)-c- ucgcccaggc -ugccuu--g aa-gcacaau ucuaagcga- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------g cggcggg--> --|------( ---)------ 8701 ---uagaauc |cuuug(-ca gacga)cu-u aaaua---cg u-g|acgggg uauuguaagu 8761 gg-cagagug gc----(cuu -guu------ ---------- ---------- ---------- 8821 ----)----g ccacgauc-c ac-|uga~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Pel.tellim 9262 bp RNA RNA 28-JAN-1997 DEFINITION Peltoboykinia tellimoides (Saxifragaceae); . ACCESSION AF036499 KEYWORDS . SOURCE Peltoboykinia tellimoides (Saxifragaceae). ORGANISM Peltoboykinia tellimoides (Saxifragaceae). REFERENCE 1 (bases 1 to 3365) AUTHORS Doug and Pam Soltis JOURNAL Mol. Biol. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 3365) AUTHORS Kuzoff,R.K., Sweere,J.A., Soltis,D.E., Soltis,P.S. and Zimmer,E.A. TITLE Direct Submission JOURNAL Submitted (03-DEC-1997) Botany, Washington State University, 324 Science Hall, Pullman, WA 99164-4238, USA STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF036499 BASE COUNT 799 a 810 c 1057 g 699 t 5897 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~cccc aggucagg-c gGG----AUU 481 AC|CCGCUGA -G--UU|UA( AGCA)UA-UC AAUAAG-C-G G-AGGAAA-- --AGAAACU( 541 UAC-A)AG-G AU|UCCCUUA GU---AAC(G GCGA)GCG-A A-----CCGG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------gcuu guaaaucagg 781 cgac--(cuu g--)---u-u gu-cugaauu guagucugg- agaagcgucc uca------- 841 -----gcg-- ---------- ---------- ---------- ---------- gc-gg-accg 901 ggcu-caa-- --g-ucc-c( c-(uggaag- )g)ggg-c-- ---------- --------GC 961 --|C(GGA)G |AGGG-(UGA GAGC)-CCCG UC|--g-ugc ccggacccug u-----cgca 1021 ccac------ -gaggcgc-u gucaac---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GUU(----UG 1141 GGAA)UGCAG CCCCAA---- ucGGGC-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUC-- ---------- ---------- ---------- )CGU-CCAAG GCU----AAA 1381 UA-------- ---------- CGGGC-GAGA GACCGAUAGC AAAC-AAGUA CC(GCGA)G- 1441 G-GAAAGAUG -AAA-AGGAC UUU(ga-aa- )AGAG-AGUC A-AAGAGUGC U-UGAAAU-U 1501 GUCGG-GAG< gg---aagcg aauggggg-u c--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ----ggcgau gcgucccggu cgg--augug 2221 gaacggu(ga aa-)gccgg- ucucccaau- -cgacucggg guguggaccg augcg|gauu 2281 gcagc-ggcg acccaagcc- -cgggaug-- ---------- -----(uugu u)-------- 2341 ---------- -auuacucg- --ggauaugu cg-uugc-ug ugauuguggu aggcagcgug 2401 c---gcc(uc uu-)ggc--- gugc-(ccuu g)-gcaucu- gugcgcuccu g--------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 gugu-cgg-- --------cc ugc-gggc-- uccccauucg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UGACAUGUGU GCGAGUCa-a cgggc----( ------uagu 2641 aa)------- ---------- ---a-cccg- ---------- u-aaGGCGUA AG(GAAG)CU 2701 AA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------uug gugggau-cc c--------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----cuugu- ----)----- ---------- -------ggg uugcacugcc 3061 g--------- ---------- ---------- ---------- -------acc ga-ccu-uga 3121 uc-(--uuuu -)-gugaa-- gggu-ucgag u]-------- ---------G AGAGCAUAC- 3181 -CUG-UCGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AG|C-GGGGC GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC CCG-CA---G CG-AUACUGA (CGUGCAAA) 3301 UCG-U-UCGU CUGACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGA -GCC--c|-- -|-acg---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------ug 3661 cgaguUCUAU -C|GGG--UA AA-GCCAAUG AUUAGAGGC- -----AUCGG GGGC--(gca 3721 a-c)--GCCC U-CGA-|CCU AUUC-UCAAA CUUUA-AAUA |GGUAGGacg -gcgcggcu( 3781 gcuuuauug) agccgcgc-c aagg------ ---------- ---------- ---------- 3841 ---------- ---------- ----AAUcga g|AG-CUCCA -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- GAAGCCG--- GGUUACG--G 3961 U|GACC-AAC U-G--CG-CG CUAACcua-- --------ga acccac---- -AAAGGGUGU 4021 U--GGUCGAU UAAGACA-GC AGGACGGUGG UC(AUGG-AA GUC)GAAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-CGA AAA--UGGAU 4141 G--GCG-CU- AAAGCGCGC| G|-------- --ACCUAU-- --ACCCGGC| (- -----)ggcc ccgau-gAGU AGGA------ 4441 --GGG|-CG- CG-GC-GG-- --------U- -C-G-Cug-- c------AAA ACCU-----G 4501 G-GGC(GCGA -)GCCCGGG- CGG|A-GCG| G--CCGUCG- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GGCCGAAGA G-GGG|AAAG GUU|CCAUGU GA-ACG(-GC ACU)UG|CAC 4681 AUGGGUUAGU |-CGA-UCCU AAGA------ -------<-g acgggg(-ga ag)ccu--gu 4741 c--ugauag- --cgcgc--- ---------- ---------- (uca-----) ---------- 4801 --------gc gcgagcu--- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA AGGGA-AU-C GGG(UUAAAA UU-)CCUGA| -AC----cgg gacgugg-cg 4981 gc[ug----- ---------- ---------- ---------- -----acg(- -gcaa--)cg 5041 u--------- ---------- ---------- ---------- -----ua-g] gga-guccgg 5101 agac-----g ucg--gcggg gg-c-cucg- -GG-AAGA(G UUAUCUUU-) UCUGUU-|UA 5161 A-cagccug- ---------- ccc|a----C CCUG--GAAA ---CGG(CUC AG-)CCGGA- 5221 GG-UA-GGG- uccag----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----cggc-u gGA-----AG 5341 AGCACCGCA( -cg-ucg-)C GUGGUGUC-c ggugcg---c ccccg---gc ggcC-CUUGA 5401 AAA-uccgga -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaccgag-- ---------- ----ug-ccg -acc-acg-- cc-cgGUCGU 5581 A|CU--CAUA ACC(GCAUCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| GGUCG-||A- 5641 UG-G--AACA AU-GUAG-GC A-AGGGAAGU CGGCAA-AAU -GGAUCCGUA AC(UUCG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- -(-----)---- -------CUC AGAACU|G(- --GUA)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--UG G|UCC(---- 6661 cugc)GGA-- ---------- --U-GCUCAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU GUCUACUAUC 6901 CA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCC G---ACU-UU |GUGAAAUGA CUUGAGAGGU 7021 GUAGGAUAAG UGGGAGCcg- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -gaaa)---- 7141 -------cgG C-GAAAGUGA AA-UACCACU |ACUUUUAA- -CGUUA-UUU UACUUAu--- 7201 ---------- ---------| --a GACAU-UGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAAAGAUA AC-)GCAG-G U|G|U|CCU- AAGAU-GAGC |UCAAC-GAG 7621 -A(ACA---- GAAA)UCUCG UGUGGA|AC( A|A--AAGG) GUAAAAG-CU C-GUUUGAUU 7681 -CUGAUUU(c c--aguac-- )GAAUACGAA CCGU(-GAAA )GCGUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -acC-UUC(- -GGAA-U--U U---)----- ---------- 7861 -----GAA|G CUAGAG-GUG UC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GA-)AUUCA CCAA-GUGU| UGGAU(UGUU C)ACCCACCA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-U<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->---aG UG-UC-GC-G AUGGUAAUUC AACC(UAGUA 8281 C(GAGA)GGA AC-)CGUUGA U|UCGCACAA UUGGUCAUCG CGC|-UUGGU U(GAAA)AGC 8341 CAGUGGCGCG A-AGCUACC- GU-GCGC--U GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCG-G GCCA--g--a aGCG--ACGC g<----ugcg cccgccgc-c cgauugccga 8461 ccugcaguag -gggcc(uuu u-)ggccccc aaaggcacgu guc-guuggu gaa----gcc 8521 -cuugcggc( ggacaa)gu- cg-ugagggc -cgccuu--g aa-guauaau ucccaccga- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------g cggcggg--> --|------( ---)------ 8701 ---uagaauc |cuuug(-ga gacga)cu-u aaaua---cg c-g|acgggg uauuguaagu 8761 gg-cagagug gc----(cuu -guu------ ---------- ---------- ---------- 8821 ----)----g ccacgauc-c ac-|uga~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Sax.merten 9262 bp RNA RNA 28-JAN-1997 DEFINITION Saxifraga mertensiana (Saxifragaceae); . ACCESSION AF036498 KEYWORDS . SOURCE Saxifraga mertensiana (Saxifragaceae). ORGANISM Saxifraga mertensiana (Saxifragaceae). REFERENCE 1 (bases 1 to 3365) AUTHORS Doug and Pam Soltis JOURNAL Mol. Biol. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 3365) AUTHORS Kuzoff,R.K., Sweere,J.A., Soltis,D.E., Soltis,P.S. and Zimmer,E.A. TITLE Direct Submission JOURNAL Submitted (03-DEC-1997) Botany, Washington State University, 324 Science Hall, Pullman, WA 99164-4238, USA STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF036498 BASE COUNT 810 a 798 c 1046 g 711 t 5897 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~cccc aggucagg-c gGG----AUU 481 AC|CCGCUGA -A--UU|UA( AGCA)UA-UC AAUAAG-C-G G-AGGAAA-- --AGAAACU( 541 UAC-A)AG-G AU|UCCCUUA GU---AAC(G GCGA)GCG-A A-----CCGG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------gcuu guaaaucagg 781 cagc--(cuc g--)---c-u gu-uugaauu guagucugg- agaagugucc uca------- 841 -----gcg-- ---------- ---------- ---------- ---------- ac-gg-accg 901 ggcc-caa-- --g-ucc-c( c-(uggaag- )g)ggg-c-- ---------- --------GC 961 --|C(GGA)G |AGGG-(UGA GAGC)-CCCG UU|--g-ugu ccggacccug u-----cgca 1021 ccac------ -gaggcac-u gucgac---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GUU(----UG 1141 GGAA)UGCAG CCCCAA---- uuGGGC-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUC-- ---------- ---------- ---------- )CGU-CCAAG GCU----AAA 1381 UA-------- ---------- UUGGU-GAGA GACCGAUAGC AAAC-AAGUA CC(GCGA)G- 1441 G-GAAAGAUG -AAA-AGGAC UUU(ga-aa- )AGAG-AGUC A-AAGAGUGC U-UGAAAU-U 1501 GUCGG-GAG< gg---aagcg gauggggg-c u--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ----gacgau ccaccucggu cgg--augug 2221 gaacggu(ga aa-)accgg- ucuaccgau- -cggcucggg guguggaccg augcg|gauu 2281 guggc-ggcg acccaagcc- -caagaug-- ---------- -----(uugu u)-------- 2341 ---------- --auucuug- -uggaaacgu cg-uugu-cg cgauuguggu aggcagcgua 2401 c---gcc(uu uu-)ggc--- gugc-(uucg -)-gcaucu- gugcgcuccu g--------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 gugu-cgg-- --------cc ugu-gagu-- uccccauuug >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UGACAUGUGU GCGAGUCa-a cgggc----( ------uagu 2641 aa)------- ---------- ---a-cccg- ---------- u-aaGGCGCA AG(GAAG)CU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------uug gggggau-cc c--------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----cuugu- ----)----- ---------- -------ggg uugcaccgcc 3061 g--------- ---------- ---------- ---------- -------acc ga-ccu-uga 3121 uc-(--aucu -)-gugaa-- gggu-ucgag u]-------- ---------G AGAGCAUAC- 3181 -CUG-UCGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AG|C-GGGGC GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC CCG-CA---G CG-AUACUGA (CGUGCAAA) 3301 UCG-U-UCGU CUGACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGA -GCC--c|-- -|-acg---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------ug 3661 cgaguUCUAU -C|GGG--UA AA-GCCAAUG AUUAGAGGC- -----AUCGG GGGC--(gca 3721 a-c)--GCCC U-CGA-|CCU AUUC-UCAAA CUUUA-AAUA |GGUAGGacg -gcgcggcu( 3781 gcuccauug) agccgcgc-c aagg------ ---------- ---------- ---------- 3841 ---------- ---------- ----AAUcga g|AG-CUCCA -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- GAAGCCG--- GGUUACG--G 3961 U|GCCC-AAC U-G--CG-CG CUAACcua-- --------ga acccac---- -AAAGGGUGU 4021 U--GGUCGAU UAAGACA-GC AGGACGGUGG UC(AUGG-AA GUC)GAAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-CGA AAA--UGGAU 4141 G--GCG-CU- GAAGCGCGC| G|-------- --ACCUAU-- --ACCCGGC| (- -----)ggcc ucgau-gAGU AGGA------ 4441 --GGG|-AG- CG-GC-GG-- --------U- -C-G-Cug-- c------AAA ACCU-----A 4501 G-GGC(GCGA -)GCCCGGG- CGG|A-GCG| G--CCGUCG- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GGCCGAAGA G-GGG|AAAG GUU|CCAUGU GA-ACG(-GC ACU)UG|CAC 4681 AUGGGUUAGU |-CGA-UCCU AAGA------ -------<-g acgagg(-ga aa)ccu--gu 4741 c--ugauag- --cgcgc--- ---------- ---------- (uca-----) ---------- 4801 --------gc gcgagcu--- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA AGGGA-AU-C GGG(UUAAAA UU-)CUUGA| -AC----cgg gacgugg-cg 4981 gu[ug----- ---------- ---------- ---------- -----acg(- -gcaa--)cg 5041 u--------- ---------- ---------- ---------- -----ua-g] gga-uuccgg 5101 agac-----g ucg--gcggg gg-c-cucg- -GG-AAGA(G UUAUCUUU-) UCUGUU-|UA 5161 A-cagccug- ---------- ccc|a----C CCUG--GAAA ---CGG(CUA GA-)CCGGA- 5221 GG-UA-GGG- uccag----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----cggc-u gGA-----AG 5341 AGCACCGCA( -cg-ucg-)C GUGGUGUC-c ggugcg---c ccccg---gc ggcC-CUUGA 5401 AAA-uccgga -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaccgag-- ---------- ----ug-ccg -acc-acg-- cc-cgGUCGU 5581 A|CU--CAUA ACC(GCAUCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| GGUCG-||A- 5641 UG-G--AACA AU-GUAG-GC A-AGGGAAGU CGGCAA-AAU -GGAUCCGUA AC(UUCG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- -(-----)---- -------CUC AGAACU|G(- --GUA)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--UG G|UCC(---- 6661 uugc)GGA-- ---------- --U-GCUCAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU GUCUACUAUC 6901 CA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGACC G---ACU-UU |GUGAAAUGA CUUGAGAGGU 7021 GUAGGAUAAG UGGGAGCcg- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -gcaa)---- 7141 -------cgG C-GAAAGUGA AA-UACCACU |ACUUUUAA- -CGUUA-UUU UACUUAu--- 7201 ---------- ---------| --a GACAU-UGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAAAGAUA AC-)GCAG-G U|G|U|CCU- AAGAU-GAGC |UCAAC-GAG 7621 -A(ACA---- GAAA)UCGCG UGUGGA|AC( A|A--AAGG) GUAAAAG-CU C-GUUUGAUU 7681 -CUGAUUU(c c--aguac-- )GAAUACGAA CCGU(-GAAA )GCGUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -acC-UUC(- -GGAA-U--U U---)----- ---------- 7861 -----GAA|G CUAGAG-GUG UC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GA-)AUUCA CCAA-GUGU| UGGAU(UGUU C)ACCCACCA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-U<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->---aG UG-UC-GC-A AUGGUAAUUC AACC(UAGUA 8281 C(GAGA)GGA AC-)CGUUGA U|UCGCACAA UUGGUCAUCG CGC|-UUGGU U(GAAA)AGC 8341 CAGUGGCGCG A-AGCUACC- GU-GCGC--U GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCG-G GCCA--g--a aGCG--AUGC a<----uaug cccgccgc-a cgauugccga 8461 ccugcaguag -gggcc(uuu u-)ggccccc aaaggcacgu guc-guuggu uu-----ggc 8521 acuugcggg( ggauaa)cc- cg-cgagggc -cgccuu--g aa-guauaau ucccaccga- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------g cggcgag--> --|------( ---)------ 8701 ---uagaauc |cuuug(-ca gacga)cu-u aaaua---cg gug|acgggg uauuguaagu 8761 gg-cagagug gc----(cuu -guu------ ---------- ---------- ---------- 8821 ----)----g ccacgauc-c ac-|uga~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Tel.grandi 9262 bp RNA RNA 28-JAN-1997 DEFINITION Tellima grandiflora (Saxifragaceae); . ACCESSION AF036500 KEYWORDS . SOURCE Tellima grandiflora (Saxifragaceae). ORGANISM Tellima grandiflora (Saxifragaceae). REFERENCE 1 (bases 1 to 3368) AUTHORS Doug and Pam Soltis JOURNAL Mol. Biol. Evol. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 3368) AUTHORS Kuzoff,R.K., Sweere,J.A., Soltis,D.E., Soltis,P.S. and Zimmer,E.A. TITLE Direct Submission JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: AF036500 our:Submitted (03-DEC-1997) Botany, Washington State : University, 324 Science Hall, Pullman, WA 99164-4238, USA BASE COUNT 799 a 821 c 1059 g 689 t 5894 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ 61 |~~~~~~~|~ ~|~~~~~~~~ ~~~|~~~~(~ ~~~~~~~~)~ |~~~~~~~~~ ~~~~~~~|[~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~]~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~(~~~~~ )~~~~|~~~~ 241 ~~~~~~~~~~ ~(~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~(~~~ ~~~~~~~~~/ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ )~~~~~cccc aggucagg-c gGG----AUU 481 AC|CCGCUGA -G--UU|UA( AGCA)UA-UC AAUAAGUC-G G-AGGAAA-- --AGAAACU( 541 UAC-A)AG-G AU|UCCCUUA GU---AAC(G GCGA)GCG-A A-----CCGG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------gcuu guaaaucagg 781 cgau--(cuc g--)---u-c gu-cugaauu guagucugg- agaagcgucc uca------- 841 -----gcg-- ---------- ---------- ---------- ---------- ac-gg-accg 901 ggcc-caa-- --g-ucc-c( c-(uggaag- )g)ggg-c-- ---------- --------GC 961 --|C(GGa)G |AGGG-(UGA GAGC)-CCCG UC|--g-ugc ccggacccug u-----cgca 1021 ccac------ -gaggcgc-u gucgac---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGGGUU GUU(----UG 1141 GGAA)UUCAG CCCCAA---- ucGGGC-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUC-- ---------- ---------- ---------- )CGU-CCAAG GCU----AAA 1381 UA-------- ---------- UGGGU-GAGA GACCGAUAGC AAAC-AAGUA CC(GCGA)G- 1441 G-GAAAGAUG -AAA-AGGAC UUU(ga-aa- )AGAG-AGUC A-AAGAGUGC U-UGAAAU-U 1501 GUCGG-GAG< gg---aaccg gauggggg-c c--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ----ggcgau accccccggu cgg--augug 2221 gaacggu(ga ga-)accgg- ucugccgau- -cggcucggg guguggaccg augcg|gauu 2281 gcggc-ggcg acccaagcc- -cgggaug-- ---------- -----(uugu u)-------- 2341 ---------- -auuacucg- ugagauacgu cg-uugc-ug cgauuguggu aggcagcgcg 2401 c---gcc(uu au-)ggc--- gugc-(cucg -)-gcaucu- gcgcgcuccu g--------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 gugu-cgg-- --------cc ugu-gggc-- uccccauucg >------GCC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UGACAUGUGU GCGAGUCa-a cgggc----( ------uagu 2641 aa)------- ---------- ---a-cccg- ---------- u-aaGGCGUA AG(GAAG)CU 2701 AA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -------uug gugggau-cc c--------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----cuugu- ----)----- ---------- -------ggg uugcaccgcc 3061 g--------- ---------- ---------- ---------- -------acc ga-ccu-uga 3121 uc-(--uucu -)-gugaa-- gggu-ucgag u]-------- ---------G AGAGCAUAC- 3181 -CUG-UCGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AG|C-GGGGC GAAGCCAGAG 3241 (GAAA----- -----)CUCU GGU-GGAGGC CCG-CA---G CG-AUACUGA (CGUGCAAA) 3301 UCG-U-UCGU CUGACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAGUUUCC --(CUCA)GG 3421 AUAGC-UGGA -GCC--c|-- -|-acg---- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- --------ug 3661 cgaguUCUAU -C|GGG--UA AA-GCCAAUG AUUAGAGGC- -----AUCGG GGGC--(gca 3721 a-c)--GCCC U-CGA-|CCU AUUC-UCAAA CUUUA-AAUA |GGUAGGacg -gcgcggcu( 3781 gcuuuauug) agccgcgc-c aagg------ ---------- ---------- ---------- 3841 ---------- ---------- ----AAUcga g|AG-CUCCA -AGU-GGGCC -AUU-UUUG( 3901 G-UAAG)CAG AAC-UGGC-G AUGCGG(GA- UGAA)CCG-- GAAGCCG--- GGUUACG--G 3961 U|GCCC-AAC U-G--CG-CG CUAACcua-- --------ga acccac---- -AAAGGGUGU 4021 U--GGUCGAU UAAGACA-GC AGGACGGUGG UC(AUGG-AA GUC)GAAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUCAACU AGC|CC-CGA AAA--UGGAU 4141 G--GCG-CU- AAAGCGCGC| G|-------- --ACCUAU-- --ACCCGGC| (- -----)ggcc ccgau-gAGU AGGA------ 4441 --GGG|-CG- CG-GC-GG-- --------U- -C-G-Cug-- c------AAA ACCU-----G 4501 G-GGC(GCGA -)GCCCGGG- CGG|A-GCG| G--CCGUCG- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GGCCGAAGA G-GGG|AAAG GUU|CCAUGU GA-ACG(-GC ACU)UG|CAC 4681 AUGGGUUAGU |-CGA-UCCU AAGA------ -------<-g acgggg(-ga ag)ccu--gu 4741 c--ugauag- --cgcgc--- ---------- ---------- (uca-----) ---------- 4801 --------gc gcgagcu--- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA AGGGA-AU-C GGG(UUAAAA UU-)CCUGA| -AC----cgg gacgugg-cg 4981 gc[ug----- ---------- ---------- ---------- -----acg(- -gcaa--)cg 5041 u--------- ---------- ---------- ---------- -----ua-g] gga-guccgg 5101 agac-----g ucg--gcggg gg-c-cucg- -GG-AAGA(G UUAUCUUU-) UCUGUU-|UA 5161 A-cagccug- ---------- ccc|a----C CCUG--GAAA ---CGG(CUC AG-)CCGGA- 5221 GG-UA-GGG- uccag----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----cggc-u gGA-----AG 5341 AGCACCGCA( -cg-ucg-)C GUGGUGUC-c ggugcg---c ccccg---ga cggCCCUUGA 5401 AAA-uccgga -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggaccgag-- ---------- ----ug-ccg -acc-acg-- cc-cgGUCGU 5581 A|CU--CAUA ACC(GCAUCA )GG|UCU-CC AAGGU(GAAC A)GCCUCU-| GGUCG-||A- 5641 UG-G--AACA AU-GUAG-GC A-AGGGAAGU CGGCAA-AAU -GGAUCCGUA AC(UUCG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- -(-----)---- -------CUC AGAACU|G(- --GUA)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--UG G|UCC(---- 6661 cugc)GGA-- ---------- --U-GCUCAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA CGAGAUUCCC ACUGU-CCCU GUCUACUAUC 6901 CA|GCGAAAC C|aca-gCCA AG(GGAA-CG GG)CUUGGCA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCC G---ACU-UU |GUGAAAUGA CUUGAGAGGU 7021 GUAGGAUAAG UGGGAGCcg- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -gcaa)---- 7141 -------cgG C-GAAAGUGA AA-UACCACU |ACUUUUAA- -CGUUA-UUU UACUUAu--- 7201 ---------- ---------| --a GACAU-UGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAAAGAUA AC-)GCAG-G U|G|U|CCU- AAGAU-GAGC |UCAAC-GAG 7621 -A(ACA---- GAAA)UCUCG UGUGGA|AC( A|A--AAGG) GUAAAAG-CU C-GUUUGAUU 7681 -CUGAUUU(c c--aguac-- )GAAUACGAA CCGU(-GAAA )GCGUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -acC-UUC(- -GGAA-U--U U---)----- ---------- 7861 -----GAA|G CUAGAG-GUG UC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUCCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGAAG(CA -GA-)AUUCA CCAA-GUGU| UGGAU(UGUU C)ACCCACCA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-U<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->---aG UG-UC-GC-A AUGGUAAUUC AACC(UAGUA 8281 C(GAGA)GGA AC-)CGUUGA U|UCGCACAA UUGGUCAUCG CGC|-UUGGU U(GAAA)AGC 8341 CAGUGGCGCG A-AGCUACC- GU-GCGC--U GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCG-G GCCA--g--a aGCG--ACGC g<----ugcg cccgucga-c cgauugccga 8461 ccugcaguag -ggguc(auu u-)ggccccc aaaggcacgu guc-guuggu gaa----gcc 8521 -cuugcggc( gaacaa)gc- cg-cgagggc -cgccuu--g aa-guauaau ucccaccga- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------g cggcggg--> --|------( ---)------ 8701 ---uagaauc |cuuug(-ca gacga)cu-u aaaua---cg c-g|acgggg uauuguaagu 8761 gg-cagagug gc----(cuu -guu------ ---------- ---------- ---------- 8821 ----)----g ccacgauc-c ac-|uga~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS (3)-strame 9262 bp RNA RNA ~?~???? DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 9262 others ORIGIN 1 |......... .......... .......... .......... .......... ...|...... 61 |.......|. .|........ .......... .......... |......... .........- 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... ......-... .......... .......... 241 .......... ..-------- ---------- ---------- -----..... .......... 301 .......... --........ ..-....... .......... .......... ---------- 361 ---------- ---------- ---------- ---------- ---------- --.....-.. 421 .......... .......... .......... .......... .......... .......... 481 ..|....... ..--...... .......-.. ......-.-. ........-- --........ 541 ........-. .......... .......... ........-. .-----.... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... --........ .--....... .......... .......... 781 .......... ..-....... ..-....... .......... .......... .......... 841 ........-- ---------- ---------- ---------- ---------. .....-.... 901 .......... --.-...-.( .-........ ..).....-- ---------- -...-..... 961 --........ .....-.... .....-.... ...-...... .......... .-----.... 1021 .......... ........-. .......... ...------- .--------- ---------- 1081 ---------- ---------- ---------- --------.. .......... ......-... 1141 .......... ......---. ......-..- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ........-- ---------- ---------- ---------- .......... ...----... 1381 ..-------- --------.. .......... .......... .......... .........- 1441 .......... ....-..... .......... .....-.... .......... .......... 1501 .......... ..-....... .......... ........-. .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......--- .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .........- .......... .......... .......... .......... 2401 .-........ ....-..... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... ...-...... .......... .......... ...(...... 2581 ..)....... .......... .......... ........-. ......---. .......... 2641 ...------- ---------- ---....... .......... .......... .......... 2701 ...------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------. 2881 .......... .......... .......... .......... .......... .......... 2941 .--------- ---------- ---------- ---------- ---------- ---------. 3001 .......... .......... .......... .......... .......... .......... 3061 .......... ..---..... .......... .......... .......... .......... 3121 .....-.... .......... ....-..... .......... .......... .........- 3181 .......... .......... .......... ....-....- ..|.-..... .......... 3241 .....----- -----..... ...-...... .......... .......... .......... 3301 .......... .......... .......--. .--------- ---------- ---.....-- 3361 --...--... ...-...... .......... .......... .......... --........ 3421 .......... .......|.. .......... .......... ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- .......... 3661 .......... -.....-... ..-....... .........- -......... .....-.... 3721 ....-..... .....-|... .......... .....-.... .......... -........- 3781 .......... .......... .......... .......... .......... ---------. 3841 .......... .......... .......... .|..-..... .......... ....-..... 3901 .......... ...-...... .......... .......... ........-- .......--. 3961 .......... .-..-..-.. .......... .......... ......---- .......... 4021 .--....... .......-.. .......... .......... .......... ..|.(...). 4081 |......... .......|.. .......... .......... ...|..-... ...--..... 4141 ......-... .........| .......... ........-- -......... ........-. 4201 .......... .......... .......... .......... .......... .......... 4261 .......... .......... .......... .......... .......... .......... 4321 .......... .......... .......... .......... .......... .......... 4381 .......... .......... .........- .......... .......... .......... 4441 .....|-... ........-- -......... ..-....... .----.-... ....----.. 4501 .......... .......... .........| .........- .......... ......|... 4561 .......... -........- .......... .......... .......... .......... 4621 .......... .......... .-........ .......... .......-.. .......... 4681 .......... .-........ .......... .......... .......-.. ......-... 4741 .......... .......... .........- -------... .......... ....-..... 4801 .......... .......... .......... .......... .......... .......... 4861 .......... ......---- ---------- --------.. .......... .......... 4921 ......-... ........-. .......... .......... -......... .......... 4981 .........- -----..... .......... ..-----.-- -.---..... .......... 5041 .......... .......... ..----.... .......... .......-.. .......... 5101 ....----.. ...-...... ....-..... .......... .......... ......-|.. 5161 .........- ------.... .......... ....-..... ---....... .......... 5221 .......... .......... ........-- ---------- ---------- ---------- 5281 ---------- ---------- -------... .........- ----...... ...-----.. 5341 .......... .......... ........-. .......... ......--.. ....-..... 5401 .......... .......... .......... .......... .......... .......... 5461 .......... .......... .......... .......... .......... .......... 5521 .......... .......... .......... .......... ........-- ..-....... 5581 .......... .......... .......... .......... ........-. .......... 5641 ....--.... .......... .......... ......-... -......... .......... 5701 .......... .......... .......... .......... .......... .......... 5761 .......... .......... .......... .......... ......-... .......... 5821 ........-. ...-...... ..-....... ..-------- ---------- ---....... 5881 ..-....... ....-..... .......... .......... ....-..... .......... 5941 .......... .......... .......... .......... .......... .......... 6001 .......... .......... .......... .......... .......... .......... 6061 .......... .......... .......... .......... .......... .......... 6121 .......... .......... .......... .......... .......... .......... 6181 .......... .......... .......... .......... .......... .......... 6241 .......... .......... .......... .......... .......... .......... 6301 .......... .......... .......... .......... .......... .......... 6361 .......... .......... .......... .......... .......... .......... 6421 .......... .......... .......... .......... .......... .......... 6481 .......... .......... ....------ .......... ..--...... .......... 6541 .......... .......... .---...... .......... ........(. .....).... 6601 .......... .|........ .......... .......... ....|.-... .|.....--. 6661 ........-- ---------- --.-...... ........-- .......... .......... 6721 ..-....... .......... ...-...... .......... .......... .......... 6781 .......... .......... ........|. (...)..... .......... .......... 6841 .......... ..|....... .......... .......... .....-.... .......... 6901 ..|....... .|........ .......-.. .......... ..-...-... .......... 6961 .......... .......... ...-|..... .......... .......... .......... 7021 .......... .......... .......... ...------- ---....... .......... 7081 .......... .......... .......... .......... .....--..- -......... 7141 .......... .......... ..-....... |......... -.....-... .......... 7201 .......... .........| .......... .......... .......... .........- 7261 .......... ..----.... .........- --........ .......... .......... 7321 .......... .......... .......... .......... .......... .......... 7381 .......... .......... .......... .......... .......... .......... 7441 .......... .......... .......... .......... .......... .......... 7501 .......... .......... .......... ......-... .......... .......... 7561 .-........ .......... .......... ...|.|.... .......... .......... 7621 .......... .......... .......... .|.--..... .......... .......... 7681 .......... .......... .......... .......... .......... -....|...- 7741 .......... .......... .......... .......... .......... .......... 7801 .......... .......... .........- -....-.... ...-.----- ---------- 7861 -----...|. .......... ..|....... ........|. ...|...... ..|....... 7921 .......... .......... .......... .......... ........|. ....|..... 7981 .......|.. .......... ...-...... .......... .......... .......... 8041 .......... .......... .......... .......... .......... .......... 8101 .......... .......... .......... .......... .......... .......... 8161 .......... .......... .......... .......... .......... .......... 8221 .......... .......... .......... ........-. .......... .......... 8281 .......... .......... .|........ .......... .......... .......... 8341 .......... .......... .......... .......... .......... ...-...... 8401 .......... .......... ....-..... .......... ........-. .......... 8461 .......... -......... .......... .......... .......... .......... 8521 .......... .......... .......... .......... .......... .......... 8581 .......... .......... .......... .......... .......... .......... 8641 .......... ......-... .-....-... .......... ..|....... .......... 8701 .......... .......... .......... .....---.. ...|...... .......... 8761 .......... .......... .......... .......... .......... .......... 8821 .......... .......... ...|...... .|........ .--...-... ...-...... 8881 .....|.... .......... .......... .......... .......... .......... 8941 .......... .......... .......... .......... .......... .......... 9001 .......... .......... .......... .......... .......... .......... 9061 .......... .......... .......... .......... .......... .......... 9121 .......... .......... .......... .......... .......... .......... 9181 .......... .......... .......... .......... .......... .......... 9241 .......... .......||| || // LOCUS S.pseudoco 9262 bp RNA RNA 30-JUL-1998 DEFINITION Skeletonema pseudocostatum.; 28S ribosomal RNA; 28S rRNA gene; group I intron; internal transcribed spacer 2; ITS2. ACCESSION Y11512 KEYWORDS 28S ribosomal RNA; 28S rRNA gene; group I intron; internal transcribed spacer 2; ITS2. SOURCE Skeletonema pseudocostatum. ORGANISM Skeletonema pseudocostatum. REFERENCE 1 (bases 1 to 3878) AUTHORS Van der Auwera,G. and De Wachter,R. TITLE Structure of the large subunit rDNA from a diatom, and comparison between small and large subunit ribosomal RNA for studying stramenopile evolution JOURNAL J. Eukaryot. Microbiol. 45, 515-521 (1998) STANDARD No information REFERENCE 2 (bases 1 to 3878) AUTHORS Van Der Auwera,G.J.J. TITLE Direct Submission JOURNAL Submitted (26-FEB-1997) G.J.J. Van Der Auwera, University of Antwerp (U.I.A.), Dept. of Biochemistry, Universiteitsplein 1, B 2610 Wilrijk, BELGIUM STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: Y11512 BASE COUNT 964 a 694 c 932 g 894 t 5778 others ORIGIN 1 |--------- ---------- ---------- auuacaacuu uuagcaaugg aug|ucuugg 61 |gucacac|a a|-CGAUGAA GAA|CGCA(- -GCGA-AA)U |GC-GAUAcg ua-augc|[- 121 gaauugcaga acuucgugaa u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---cauca|a aauuuu-gaa cgc-(acauu )-g-c|gcua 241 c------uga g(-------- ---------- ---------- -----uaau- ---)cucagu 301 -------agc ---augcuua -u-cu-gagu guc---(uuu aa-------/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------aug )---gaucuc agauuaag-u aag----acU 481 AC|CCGCUGA -A--UU|UA( AGCA)UA-UA AUUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-A)AG-G AU|UCCCCUA GU---AAC(G GCGA)GUG-A A-----GCGG GAUG------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ccau----gu 781 ga----au-- --------cu gc-gcaacca gcaauggugc gccgaauugu ggucuga--- 841 ---------- ---------- ------agaa guauuguc-- --------gg ccgcg-aguc 901 cggguuaa-- --c-ugu-a( u-(uggaaa- )a)uac-g-- ---------- --------GC 961 --|C(UGU)G |AGGG-(UGA AAGC)-CCCG UU|--caugc cuggacuugu ------ugcg 1021 cuuuggcaca ugcuuucu-a c--------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-cgaguu gcu(----ug 1141 ggau)ugcag cuc-aa---a uuuggu-g(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 guaaauuc-- ---------- ---------- ---------- )cau-CUAAA GCU----AAA 1381 UA-------- ---------- UUGGU-GUGA CACCGAUAGU GUAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAUG -CAA-AGAAC UUU(ga-aa- )AGAG-aguu -aaagaguac c-ugaaau-u 1501 guuaa-aa-< gg---gaagc gaaggaaucc aguguaaa-g cgaagccauu cuucucaagc 1561 cacuuguggu uugggcgcug ugguuagcug uacuaauucu gggcuugacc uggggcauac 1621 guucuucgag uagacgacuc uucggaguga gugcucguuu uucauauccu gggucgggcu 1681 gaggucaguc acucugugcu cgugaugaau uaggaaau-- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- --------gg auuucuuuac >-------CC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUaugu gcaaguac-g ucagu----( ----g-gcaa 2641 --)------- ---------- ---a-cugau ---------- ---augcGUA AU(GAAA)GU 2701 AA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -----cagug guagg----- ----aaccuu 2941 c--------- ---------- ---------- ---------- ---------- ---------g 3001 ggugcac--- ---------u auccgccggc caua------ ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 -------auc cuucgggaga aaggucugag u]-------- ---------G UGAGCAUAC- 3181 -AUG-UUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AG|U-AGGGC GAAGCCAGGG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G UG-AUUCUGA (CGUGCAAA) 3301 UCG-A-UCAU CAAAUUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAAUUUCC --(CUCA)GG 3421 AUAGC-UGCA -AUU--A|-- ----auca-- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---auUUUAU -C|AGG--UA AA-GCGAAUG AUUAGAGGa- -----uccug ggac--(gua 3721 a-u)--gucc u-agg-|ccu AUUC-UCAAA CUUUA-AAUG |GGUAAGaac -c-caggg-- 3781 uugcuuaauu g-aacccugg cgucga---- ---------- ---------- ---------- 3841 ---------- ---------- -----aug-A A|GG-UUGCU -AGU-GGGCC -ACA-CCGG( 3901 G-UAAG)CUG GUU-UGGC-G AUGCGG(GA- UGAU)CCG-- AACGUUG--- AGUUAAA--G 3961 U|GCCA-AAG U-G--AU-CG CUCAC-cua- --------ga ucccac---- -AAAAGGUGU 4021 U--GGUUCAU UUAGACA-GC AGGACGGUGG CC(AUGG-AA GUU)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- GAAGCGAUC| C|-------- --ACUUAU-- --ACUCAAC| (- -----)-ggc cuagu-gAGU AGGA------ 4441 --GGG|-UG- UG-UA-GG-- --------u- -u-g-uug-- c------gca gcuu------ 4501 auGCC(GUGA -)GGCUAAG- UGA|a-acg| g--CCUAUA- GUAC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GACUGAAGU G-GGG|AAAG GUU|CCACGU GA-ACA(-GC AAU)UG|GAC 4681 GUGGGUUAGU |-CGA-UCCU AAGA------ ---------- 4921 ----UC-GAA AGGGA-AU-C UGG(UUAAUA UU-)CCAGA| -AC----cag gacgugg-au 4981 au[-uga--- ---------- ---------- ---------- -----gug(- -guaa--)ca 5041 c--------- ---------- ---------- ---------- -----aa-g] cga-agccgu 5101 agac-----g ucg--gcggg ag-c-ccug- -AG-GAGA(G UUUUCUCU-) UCUUCU-|ua 5161 a-c-aagua- ---------- --cacugacc cugg--aauc ----gg(auu ga-)ccgga- 5221 ga-ua-ggg- uuggag---- ---------- ---------- ---------- ---------- 5281 ---------- ----u-cuug -g-------- ---------- ------ga-a agg------- 5341 -uggauagu- -uuuug---u cugcuu---c ggugcg---c -ucucg--uc gucC-CUUGA 5401 AAA-uacggu -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ---------- --------gg agugauuuau uugc-acc-- cc-uggUCGU 5581 A|CU--GAUA ACC(GCAUCA )GG|UCU-CC AAGGU(UAGC A)GCCUCU-| AGUUG-||A- 5641 UA-G--AAUA AU-GUAG-GU A-AGGGAAGU CGGCAA-AAU -AGAUCCGUA AC(UUCG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- ------------ -------CUC AGAACU|G(- --GAG)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGUG|A--CG G|CCG(---- 6661 gaga)CGG-- ---------- --U-GUUGAC ACAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(ggaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA UGAGAUUCCC ACUGU-CCCU AUCUACUAUC 6901 UA|GCGAACC C|ACA-GCCA AG(GGAA-CG GG)CUUGGAA -U-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCC G---ACG-UU |GUGAAAUGA CUUAUGAGGU 7021 GUAGAAUAAG UGGGAGC--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -uucg)---- 7141 ---------G C-GCACCUGA AA-UACCACU |ACUCGUAA- -UGUUG-UUU UACUUAU--- 7201 ---------- ---------| --A GACAA-CGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAACAAUA AC-)ACAG-G U|G|U|CCU- AAGGU-CAGC |UCAAU-GAG 7621 -A(ACA---- GAAA)UCUCA UGUAGA|AC( A|A--AAGG) GUAAAAG-CU G-ACUUGAUU 7681 -UUGAUUU(u c--aguac-- )GAAUACAAA CCGG(-GAAA )CCGUGG|CC --UAU|CGA- 7741 UCCUUGA--- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------a guuu-uca(- --gaa-u--u u---)----- ---------- 7861 -----AAA|G UUCGAG-GUG UC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUUCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGUCG(CA -GA-)AGUCA CCAA-GUGU| AGGAU(UGUU C)ACCCAUCA 8041 ACAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-a<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->--uug uu-guccc-G AUAGUAAUCC AACU(UAGUA 8281 C(GAGA)GGA AC-)CGUUGG U|UCAGAUAU UUGGU-AAUG CAG|-UUGGC U(GAAC)AGC 8341 CAAUGCUGCA A-AGCUACC- AU-CUGU--A GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCA-U GCUA-----g cagg---gau g --|------- ---------- 8701 -----aaauc |cuuug(-ua gacga)cu-u aauu----au gga|acgugg uacuguaagc 8761 au-gagagua gc----(cuu ugu------- ---------- ---------- ---------- 8821 ----)----g cua~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Och.danica 9262 bp RNA RNA 29-JUL-1997 DEFINITION Ochromonas danica.; 28S ribosomal RNA; 28S rRNA; internal transcribed spacer 2; ITS2. ACCESSION Y07977 KEYWORDS 28S ribosomal RNA; 28S rRNA; internal transcribed spacer 2; ITS2. SOURCE Ochromonas danica. ORGANISM Ochromonas danica. REFERENCE 1 (bases 1 to 3263) AUTHORS Van der Auwera,G. and De Wachter,R. TITLE heterokont algae ochromonas danica, nannochloropsis salina, and tribonema aequale, and phylogenetic analysis Complete large subunit ribosomal RNA sequences from the JOURNAL J. Mol. Evol. 45 (1), 84-90 (1997) STANDARD No information REFERENCE 2 (bases 1 to 3263) AUTHORS Van Der Auwera,G.J.J. TITLE Direct Submission JOURNAL Submitted (12-SEP-1996) G.J.J. Van Der Auwera, University of Antwerp, Dept. Biochemistry, Universiteitsplein 1, B-2610 Wilrijk, Antwerpen, BELGIUM STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: Y07977 + Y07976 BASE COUNT 926 a 690 c 949 g 822 t 5875 others ORIGIN 1 |--------- ---------- ---------- gacaacacuu ucagcaacgg aug|ucucgg 61 |uucccau|a a|-CGAUGAA GAA|CGCA(- -GCGA-AA)U |GC-GAUAcg ua-augc|[- 121 gaaacgcauc agua-gugag u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---caucg|a aacuuu-gaa cgc-(aacuu )-g-c|acuu 241 --------cc c(-------- ---------- ---------- -----uuug- ---)ggg--- 301 -------agu ---auaucua -u-ug-gagu guc---(ugu ga-------/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------ucg )---gaccuc caauucga-u aag----aaU 481 AC|CCGCUGA -A--UU|UA( AGCA)UA-UA ACUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-A)AG-U AU|UCCCCUA GU---AAC(G GCGA)GUG-A A-----GCGG GAAA------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---ggcugaa 781 acc-uucg-g gg-auguagu cugcagaagg gaacgucg-- ---------- ---------- 841 ---------- ---------- ---------- -------a-- --------gg auucg-gauc 901 ccaucgaa-- --g-uug-u( c-(ugagau- )g)gca-c-- ---------- --------GC 961 --|C(AAG)G |AGGG-(UGA UAGC)-CCCG UU|-cguggu gaggauucga ------gucc 1021 agcac---gu cucuucga-a ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-cgaguu guu(----ug 1141 ggau)ugcag cucua----- augggu-g(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 guaaauuc-- ---------- ---------- ---------- )cau-CUAAA GCU----AAA 1381 UA-------- ---------- UGGAU-GGGA GACCAAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAUG -AAA-AGCAC UUU(ga-aa- )AGAG-agug -aaauaguac c-ugaaau-u 1501 gcugg-aaa< gg---aaaag uugggaagca gugggggg-a uagguacuug uaccuguuga 1561 ccgguucggc uugcuugggg aggcggaaga aggucgaggu guuguuucag cccucguguc 1621 cugucgucug cccgagcgac ucgaacaaaa ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- --------ug cuucucaaca >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUGUGC GCGAGUGC-u cggag----( ----uuguac 2641 --)------- ---------- ---c-uccca ---------- ---gcgcGAA AU(GAAA)GU 2701 AA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -----aggua ggcuucggcc ugcugaggua 2941 a--------- ---------- ---------- ---------- ---------- ---------c 3001 aagguuucag uaccugccuu aucgaccgac caug------ ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 -------auc cuucggguga aagguuugag u]-------- ---------A UGAGCGCAA- 3181 -AUG-UUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CUUG- AG|U-AGGAC GAAGCCAGGG 3241 (GAAA----- -----)CUCU GGU-GGAGGU CCG-UA---G CG-AUUCUAA (CGUGCAAA) 3301 UUG-A-UCGU CGAACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCUCC CGAAAUUUCC --(CUUA)GG 3421 AUAGC-UGCA -ACC--G|-- ----aaca-- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---guUUUAU -C|AGG--UA AA-GCGAAUG AUUAGAGGc- -----cucag gggu--(gga 3721 a-c)--gucc u-uga-|ccu AUUC-UCAAA CUUUA-AAUG |GGUAAGagc -c-ccggg-- 3781 uugcuuaagu g-aacucggc ggucga---- ---------- ---------- ---------- 3841 ---------- ---------- -----aug-A C|GG-UUGCU -AGU-GGGCC -AAU-CUGG( 3901 G-UAAG)CUA GAU-UGGC-G AUGCGG(GA- UGCU)CCG-- AACGUUG--- AGUUAAA--G 3961 U|GCCA-AAG U-A--UC-CG CUAAC-cua- --------ga ucccac---- -AAAAGGUGU 4021 U--GGUUCAU UAAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAACC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- CAAGCGGAU| C|-------- --ACUUAU-- --ACUCAAC| (- -----)-guc guguu-gAGU AGGG------ 4441 --AGG|-YG- YG-GG-GA-- --------u- -g-g-cga-- c------GCA UUCU-----G 4501 U-GGC(GUAA -)GCCGGGA- UGA|A-GCC| G--UCUCUA- GUGC-AGA-U CUUGGU|AG- 4561 AAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GACUGAAGU G-GAG|AAAG GUU|CCAUGU GA-ACA(-GC AAU)UG|GAC 4681 AUGGGUGAGU |-CGA-UCCU AAGA------ ---------- 4921 ----UC-GAA AGGGA-AG-C AGG(UUAAGA UU-)CCUGC| -AC----cag aaggugg-au 4981 ag[-uga--- ---------- ---------- ---------- -----gug(- -guaa--)ca 5041 c--------- ---------- ---------- ---------- -----ga-a] aga-aacugg 5101 ggac-----g cug--gcaag ag-u-ccug- -GA-AAGA(G UUCUCUUU-) UCUUUU-|ua 5161 a-cgccuug- ---------- -uucuccacc uugg--aauc ----gg(auu gc-)ccggc- 5221 ga-ua-agg- uagaggc--- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ------gg-c ggc-----aa 5341 agcagcauu( --uuuc--)u gugcuguc-c ggugcg---c -ucuug--ac ggcC-CUUGA 5401 AAU-cccagu -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ---------- --------gg auugauuuau ucuc-aca-- uc-uggUCGU 5581 A|CU--CAUA ACC(GCCUCA )GG|UCU-CC AAGGU(GUGC A)GCCUCU-| AGUCG-||A- 5641 UA-G--AACA AU-GUAG-AU A-AGGGAAGU CGGCAA-AAU -AGAUCCGUA AC(CUCG)GG 5701 AUAAGGAUU| GGCUCUAAA- ---------- ------------ -------UUU AGAACU|G(- --GCG)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--UG G|CUG(---- 6661 gaga)CGG-- ---------- --U-GUUGAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(ggaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA UGAGAUUCCC ACUGU-CCCU AUCUACUAUC 6901 UA|GCGAACC U|ACA-GCCA AG(GGAA-CG GG)CUUGGAA -G-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCC G---ACG-UU |GUGAAAUGA CUUAUGAGGU 7021 GUAGAAUAAG UGGGAGG--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -gcaa)---- 7141 ---------C C-AACGAUGA AA-UACCACU |ACUCGUAA- -UGUUG-UUU UACUUAU--- 7201 ---------- ---------| --A GACAU-CGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAACGAUA AC-)ACAG-G U|G|U|CCU- AAGGU-CAGC |UCAAU-GAG 7621 -A(ACA---- GAAA)UCUCG UGUAGA|AC( A|A--AAGG) GUAAAAG-CU G-ACUUGAUU 7681 -UUGAUUU(u c--aguac-- )GAAUACAAA CUGU(-GAAA )GCAUGG|CC --UAU|CGA- 7741 UCCUUUA--- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------a auuu-uug(- --gaa-u--u u---)----- ---------- 7861 -----UAA|G CUAGAG-GUG UC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUUCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGUCG(CA -GA-)AGGCA CCAA-GUGU| AGGAU(UGUU C)ACCCACUA 8041 ACAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-c<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->--aag uu-guugc-G ACAGUAAUCC AACU(UAGUA 8281 C(GAGA)GGA AC-)CGUUGG U|UCAGAUAA UUGGUUUAUG GGG|-UUGGU U(GAAC)AGC 8341 CAGUGCCCCG A-AGCUACC- AU-CUGU--A GGAUAAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCUA-U GCUG-----g aaug--cgac g --|------- ---------- 8701 ----uaaauc |cuuug(-ua gacga)cu-u ugau------ gaa|acaggg uauuguaagc 8761 gu-gagagua gg----(cuu -gu------- ---------- ---------- ---------- 8821 ----)----c cua~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Nan.salina 9262 bp RNA RNA 29-JUL-1997 DEFINITION Nannochloropsis salina.; 5.8S ribosomal RNA; 5.8S rRNA; internal transcribed spacer 1; internal transcribed spacer 2; ITS1; ITS2. ACCESSION Y07974 KEYWORDS 5.8S ribosomal RNA; 5.8S rRNA; internal transcribed spacer 1; internal transcribed spacer 2; ITS1; ITS2. SOURCE Nannochloropsis salina. ORGANISM Nannochloropsis salina. REFERENCE 1 (bases 1 to 3398) AUTHORS Van der Auwera,G. and De Wachter,R. TITLE heterokont algae ochromonas danica, nannochloropsis salina, and tribonema aequale, and phylogenetic analysis Complete large subunit ribosomal RNA sequences from the JOURNAL J. Mol. Evol. 45 (1), 84-90 (1997) STANDARD No information REFERENCE 2 (bases 1 to 3398) AUTHORS Van Der Auwera,G.J.J. TITLE Direct Submission JOURNAL Submitted (12-SEP-1996) G.J.J. Van Der Auwera, University of Antwerp, Dept. Biochemistry, Universiteitsplein 1, B-2610 Wilrijk, Antwerpen, BELGIUM STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: Y07975 + Y07974(5.8) BASE COUNT 909 a 744 c 1005 g 850 t 5754 others ORIGIN 1 |--------- ---------- ---------- aauacaacuu ucagcaacgg aug|ucuugg 61 |cucccac|a a|-CGAUGAA GAA|CGCA(- -GCGA-AA)U |GC-GAUAcg ua-augc|[- 121 gaauugcaga auuccgcgag u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---cauca|a accuuu-gaa cgc-(accuu )-g-c|gcuu 241 u------cgg g(-------- ---------- ---------- -----auaug ---)cccguu 301 -------agc ---auguuug -u-ug-gagu guc---(ugu u--------/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ------uucg )---gaccuc caaucaag-c aag----GCU 481 AC|CCGCUGG -A--UU|UA( AGCA)UA-UA ACUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-C)AG-G AU|UCCCCUA GU---AAC(G GCGA)GUG-A A-----GCGG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- -----acuug aaaa------ 781 -ucugg-guc g----uugua -cggcu-ccg aauuguaguc uaaagaaaur cagccaucgg 841 cc-------- ---------- ---------- ---------- ---------- ------gacg 901 cgagacaa-- --g-ucc-c( u-(uggaaa- )a)ggg-c-- ---------- --------GC 961 --|C(CCA)G |AGGG-(UGA CAGU)-CCCG UA|--caugc uugcgugggu c-----cguc 1021 uac-ggcgug uuuucgac-- ---------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-cgaguu gcu(----ug 1141 ggau)ugcag cucaaa---- gugggu-g(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 guaaauuc-- ---------- ---------- ---------- )cau-CUAAG GCU----AAA 1381 UA-------- ---------- UCGGU-GGGA GACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAUG -CAA-AGAAC UUU(ga-aa- )AGAG-aguu -aaagagugc c-ugaaau-u 1501 gcuga-aag< gg---aagga aaggaaacca guguaaug-u uguggcaucu ccccguugga 1561 cauuggacag cgguugugcc auggcguugg ucaagauggg uuugacucgc aggaguaggg 1621 ugugaggaag gugguuugca cuucggugug aauguuauau ccucgcgcuu uugcuguggg 1681 uuggaccgag gucaaccuug cgccucuggc ugagcuuugc ucaugcaagg uauggaucuu 1741 gacgaaa--- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- --------ug guuuucuuuc >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUAUAU GCGAGUAC-a ggggu----( ----g-gcaa 2641 --)------- ---------- ---a-cccc- ---------- --cgugcGCA AU(GAAA)GU 2701 AA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -----agggc ugcuucggcg gucugaggug 2941 g--------- ---------- ---------- ---------- ---------- ---------g 3001 aucugucaaa ggugcaccau cgaccgacca ug-------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 -------auu cuucggauga aagguuugag u]-------- ---------G UGAGCAUUU- 3181 -AUG-UUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AG|U-AGGGC GAAGCCAGGG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-AUUGUGA (CGUGCAAA) 3301 UCC-A-UCGU GGAAUUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAAUUUCC --(CUCA)GG 3421 AUAGC-UGCA -ACC--U|-- ----augcca ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---guUUUAU -C|AGG--UA AA-GCGAAUG AUUAGAGGc- -----cucgg gggc--(gaa 3721 a-u)--gccc u-cga-|ccu AUUC-UCAAA CUUUA-AAUG |GGUAAGagc -c-ugggg-- 3781 uugcuuaauu g-aacccuac ggucga---- ---------- ---------- ---------- 3841 ---------- ---------- -----aug-A A|GG-UUGCU -AGU-GGGCC -AAC-UGGG( 3901 G-UAAG)CUC GGU-UGGC-G AUGCGG(GA- UGAU)CCG-- AACGCUG--- AGUUAAA--G 3961 U|GCCA-AAC U-A--CC-CG CUCAC-cua- --------ga ucccac---- -AAAAGGUGU 4021 U--GGUUCAU AUAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAAC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- GAAGCGAGU| G|-------- --ACUUAU-- --ACUCAGC| (- -----)-gcc gugau-gAGU AGGA------ 4441 --GGG|-CG- UG-GA-GU-- --------u- -c-g-ucg-- u------GCA UCCU-----G 4501 U-GGC(GUGA -)GCCAAGG- UGA|A-ACG| G--ACUCUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAC- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GGCCGACGU G-GAG|AAAG GUU|CCAUGU GA-ACA(-GC AAU)UG|GAC 4681 AUGGGUUAGU |-CGA-UCCU AAGG------ ---------- 4921 ----CC-GAA AGGGA-AG-A GGG(UUAAUA UU-)CCCUC| -AC----cag gacgugg-au 4981 gu[cuga--- ---------- ---------- ---------- -----gug(- -gcaa--)ca 5041 c--------- ---------- ---------- ---------- -----aa-a] caa-aaccgg 5101 ggac-----g ucg--gcagg ag-u-uccg- -GG-AAGA(G UUCUCUUU-) UCUUCU-|ua 5161 a-caacgc-- ---------- --gauagacc cugg--aauc ----gg(auu gc-)ccggc- 5221 ga-ua-ggg- uguauua--- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ------gu-u ggg-----aa 5341 agcggcgua( -auuuu--)u gcgccguc-c ggugcg---c -ucuug--ac ggcC-CUUGA 5401 AAA-cccggu -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ---------- ---------- -ggcguguau ucgc-acc-- cc-uggUCGU 5581 A|CU--CAUA ACC(GCAUCA )GG|UCU-CC AAGGU(GUGC A)GCCUCU-| GGUCG-||A- 5641 UA-G--AAGA AU-GUAG-AU A-AGGGAAGU CGGCAA-AAU -AGAUCCGUA AC(CUCG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- ------------ -------CUC AGAACU|G(- --GAG)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--UG G|UCG(---- 6661 gaga)CGA-- ---------- --U-GUUGAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(ggaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA UGAGAUUCCC ACUGU-CCCU AUCUGCCAUC 6901 UA|GCGAACC C|ACA-GCCA AG(GGAA-CG GG)CUUGGAA -U-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCC G---ACG-UU |GUGAAAUGA CUUAUGAGGU 7021 GUAGCAUAAG UGGGAGC--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -uccg)---- 7141 ---------G C-GACGAUGA AA-UACCACU |ACUCGUAA- -UGUUG-UUU UACUUAU--- 7201 ---------- ---------| --A GACAA-CGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAACCAUA AC-)ACAG-G U|G|U|CCU- AAGGU-UAGC |UCAAU-GAG 7621 -A(ACA---- GAAA)UCUCA UGUAGA|AC( A|A--AAGG) GUAAAAG-CU A-ACUUGAUU 7681 -UUGAUUU(u c--aguac-- )GAAUACAAA CUGU(-GAAA )GCAUGG|CC --UAU|CGA- 7741 UCCUUUA--- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- gugu-uua(- --gaa-u--u u---)----- ---------- 7861 -----UAA|G CUAGAG-GUG UC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUUCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGUCG(CA -GA-)AGUCA CCAA-GUGU| AGGAU(UGUU C)ACCCACUA 8041 ACAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-g<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->--uug uu-gucgc-G ACAGUAAUAC AACU(UAGUA 8281 C(GAGA)GGA AC-)CGUUGU U|UCAGAUAA UUGGUAAAUG CGG|-UUGGC U(GAAC)AGC 8341 CAGUGCCGCG A-AGCUACC- AU-CUGU--G GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCU-U GCUG----aa gaug--cgac g --|------- ---------- 8701 ----uaaauc |cucug(-ua gacga)cu-u ugau----au gga|acgagg uauuguaagu 8761 gu-gagagua gg----(cuu ugu------- ---------- ---------- ---------- 8821 ----)----c cua~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS H.catenoid 9262 bp RNA RNA 11-JAN-191 DEFINITION Hyphochytrium catenoides. ACCESSION No information KEYWORDS No information. SOURCE Hyphochytrium catenoides. ORGANISM Hyphochytrium catenoides. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X80346 + X80345 LOCUS HC28SRIB 3634 bp DNA PLN 26-JUL-1995 DEFINITION H.catenoides gene for 28S ribosomal RNA. ACCESSION X80345 KEYWORDS 28S ribosomal RNA. SOURCE Hyphochytrium catenoides. ORGANISM Hyphochytrium catenoides Eukaryota; Plantae; Thallobionta; Eumycota; Hyphochytridiomycetes. REFERENCE 1 (bases 1 to 3634) AUTHORS Van der Auwera,G., De Baere,R., Van de Peer,Y., De Rijk,P., Van Den Broeck,I. and De Wachter,R. TITLE The phylogeny of the Hyphochytriomycota as deduced from ribosomal RNA sequences of Hyphochytrium catenoides JOURNAL Mol. Biol. Evol. 12, 671-678 (1995) REFERENCE 2 (bases 1 to 3634) AUTHORS Van Der Auwera,G.J.J. TITLE Direct Submission JOURNAL Submitted (15-JUL-1994) to the EMBL/GenBank/DDBJ databases. G.J.J. Van Der Auwera, Universitaire Instellung Antwerpen, Universiteitsplein 1, 2610 Wilrijk, Antwerpen, BELGIUM REMARK revised by author 26-JUL-95 COMMENT NCBI gi: 927413 FEATURES Location/Qualifiers source 1..3634 /organism="Hyphochytrium catenoides" /strain="MUCL35076 = ATCC18719" rRNA 1..3634 /product="28S ribosomal RNA" BASE COUNT 932 a 772 c 1030 g 898 t 2 others ORIGIN BASE COUNT 980 a 806 c 1070 g 939 t 5467 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ aaaaCAACUU UCAGCGAUGG AUA|UCUUGG 61 |CUCUCGC|A A|-CGAUGAA GAA|CGCA(- -GCGA-AA)U |GC-GAUACG UA-augc|[- 121 gaauugcaga auucagugaa u--------- ---------- ---------- -------]-- 181 ---(------ -)-------- ---cauca|A AACUUU-GAA Cgc-(aaauu )-g-c|gcuu 241 ccg------g g(-------- ---------- ---------- -----uauc- ---)cc---- 301 --ug-ggagc ---augccug -u-au-gagu gucu--(--- --guug---/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------u )--ggaccuc auaucagg-c aag----AGG 481 AC|CCGCUGA -A--UU|UA( AGCA)UA-UA ACUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-C)AG-G AU|UCCCCUA GU---AAC(G GCGA)GUG-A A-----GCGG GAAA------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------acuu gaaaauccgu 781 guagc(-ccc ----)-gcug ca-cugaauu guagucuau- cgaag-cugu -ugu------ 841 ----cagu-- ---------- ---------- ---------- ---------- ga-cc-cucc 901 cgggagaa-- --g-ucu-c( u-(uggaac- )a)ggg-c-- ---------- --------AU 961 --|C(AUA)G |AGGG-(UGA GAAU)-CCCG UC|--ugugc ccgggacgug g----ccacg 1021 u----ac--g aca-cgcu-- uucaac---- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGAGUU GCU(----UG 1141 GGAC)UGCAG CUCAAA---- AUGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUC-- ---------- ---------- ---------- )CAU-CUAAG GCU----AAA 1381 UA-------- ---------- CUGGC-GAGA GACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAUG -CAA-AGAAC UUU(ga-aa- )AGAG-AGUU A-AAAAGUAC U-UGAAAU-U 1501 GCUGA-AAG< gg---aagcg aaucaaac-c a--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 guguugaugc gccgucaucu uucagugaug uccuugcuug ggguugcgug ucggagaggg 2221 uucaccuccc uccgcugcuu cuuguuuugu aaggucaucg cugcgcugug acggcgcgua 2281 gcucagcauc aguucauauu ccgcgagaua ucgucaucag ggagguagag uauggucuug 2341 uacuauacuu guuauaucc- uguugucggc gucguggaua ggacugaggu auauacauca 2401 c-aguguacg ccuu-uacgg cugggugcgu guugcucugu uccagguacu cgauuggacu 2461 gcucgucagu gcuguuuggu auuccugugg auacugugau acguugccca uguacacucg 2521 ggaugcug-- --------ag gaa-a---ug guuugauccg >------GCC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUCUAU GCGAGUau-u cgggu----( -------ggc 2641 aa)------- ---------- ---a-cccuu ---------- ---GUGCGCA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ----agguug auguagguca acugagguag 2941 g--------- -acg------ ---------- ---------- ---------- --------gg 3001 uggucuaa-( ----cuug-- ----)----- --------uu aggcugcccc --gcacuauc 3061 g--------- ---------- ---------- ---------- -------acc gg-cca-uga 3121 ucc(u-cu-- -)ggaaaa-- aggu-cugag u]-------- ---------G UGAGCAUAU- 3181 -AUG-UUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AA|U-AGGGU GAAGCCAGGG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-UA---G CG-AUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU CAAAUUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAAUUUCC --(CUCA)GG 3421 AUAGC-AGUA -ACUc--|gg u|-------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ------caac 3661 acaguUUUAU -C|AGG--UA AA-GCGAAUG AUUAGAGGA- -----CUCGG GGAA--(GAA 3721 A-C)--UUCC U-UGA-|CCU AUUC-UCAAA CUUUA-AAUG |GGUAAGagc -acgggguu- 3781 -acuuaauug aacccugc-u guag------ ---------- ---------- ---------- 3841 ---------- ---------- ----AAUg-u g|AG-UUGCU -AGU-GGGCC -AUU-CCGG( 3901 G-UAAG)CUG GAC-UGGC-G AUGCGG(GA- UGAU)CCG-- AACGUCA--- AGUUAAA--G 3961 U|GCCA-AAG U-G--UU-CG CUCAC-CU-- --------ag auccca---- uAAAAGGUGU 4021 U--GGUUCAU UUAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAACC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- GAAGCGGGC| C|-------- --ACUUAU-- --ACUUGAC| (- -----)ugcc uuagu-gAGU AGGA------ 4441 --GGG|-CG- UG-GG-GG-- --------u- -cUG-Uug-- u------GCA GCCU-----U 4501 G-GGC(GUGA -)GCCUGGG- UGA|A-ACG| G--CCUCUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GACUGAAGU G-GAG|AAAG GUU|CCAUGU GA-ACA(-GC AAU)UG|GAC 4681 AUGGGUGAGC |-CGA-UCCU AAGA------ -------<-g auagga(-ga au)ucc--gu 4741 u---ugaaag u-cgggc--- --------u- -------uuc (cucg----) gaga------ 4801 --------gc cccgccua-- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA AGGGA-AU-C AGG(UUAAUA UU-)CCUGA| -GC----cgg gacgugg-au 4981 ac[ugu---- ---------- ---------- ---------- -----aug(- -guaa--)ca 5041 u--------- ---------- ---------- ---------- -----aa-c] uga-acucgg 5101 agac-----g cca--gcggc ag-c-cucg- -GG-AAGA(G UUCUCUUU-) UCUUUU-|UA 5161 A-cagguuc- ----cuuuuu ucc|a--u-C CCUG-GAAUC ----GG(AUU AC-)CCGGCG 5221 AU-AG-GG-- uggaa----- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----ggac-u ggc-----aa 5341 agcaccaua( --aucuc-)u gugguguc-c gaugcg---c -ugccg--ac ggcC-CUUGA 5401 AAA-uccgag -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ggagagac-- ---------- ----uuauuc --gc-acc-- cc-cggUCGU 5581 A|CU--CAUA ACC(GCAUCA )GG|UCU-CC AAGGU(GAGC A)GCCUCU-| AGUUG-||A- 5641 UA-G--AACA AU-GUAG-AU A-AGGGAAGU CGGCAA-AAU -AGAUCCGUA AC(UUCG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- -(-----)---- -------CUC AGAACU|G(- --GAG)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--UG G|CCG(---g 6661 aga-)CGG-- ---------- --U-GUUGAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(ggaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAAUU)AGUG AC|GCGCAUG AAUGGAUUAA UGAGAUUCCC ACUGU-CCCU AUCUACUAUC 6901 UA|GCGAACC C|aca-GCCA AG(GGAA-CG GG)CUUGGAA -A-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCC G---ACG-UU |GUGAAAUGA CUUAUGAGGU 7021 GUAGAAUAAG UGGGAGG--- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ----c-->(- -UUCG)g--- 7141 ---------C C-GCCGGUGA AA-UACCACU |ACUCGUAA- -UGUUG-UUU UACUUAU--- 7201 ------(--- --)------| --a GACAA-CGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAACGAUA AC-)ACAG-G U|G|U|CCU- AAGGU-GAGC |UCAAU-GAG 7621 -A(ACA---- GAAA)UCUCA UGUAGA|AC( A|A--AAGG) GUAAAAG-CU C-ACUUGAUU 7681 -UUGAUUU(u c--aguau-- )GAAUACAAA CCGU(-GAAA )GCGUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -ucU-UUU(- -AGAA-U--U U---)----- ---------- 7861 -----UAA|G CUAGAG-GUG UC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUUCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-CGAAG(CA -GA-)AUUCG CCAA-GUGU| UGGAU(UGUU C)ACCCACCA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-G<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->gucGU UG-UC-GC-G ACAGUAAUCC AACU(UAGUA 8281 C(GAGA)GGA AC-)CGUUGG U|UCAGAUAA UUGGUAaaUG CGG|-UUGCC U(GAAA)AGG 8341 CAGUGCCGCG A-AGCUACC- AU-CUGU--A GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCA-U GCUG--g-aa aGCG--ACGA U<-auucacc uuuccuga-u guaacgc--g 8461 aguagcgaua --ggccu--u ggc--ggguc caacaucaua -aaauugcgg cgcc---cac 8521 -gccuguca- acaaa--ug- gcgg-gugug -uguacgcug aaacacaauu ucaaaua--- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------u ugggaaaga> --|------( ---)------ 8701 ----uaaauc |cuung(-ua gacga)cu-u aacua---gg g-a|acgggg uauuguaagc 8761 au-gagagca au----(ccu -ugy------ ---------- ---------- ---------- 8821 ----)----a uug~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS P.megasper 9262 bp RNA RNA 11-JAN-191 DEFINITION Phytophthora megasperma. ACCESSION No information KEYWORDS No information. SOURCE Phytophthora megasperma. ORGANISM Phytophthora megasperma. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: X75631+X75632 LOCUS PM28SRRNA 3697 bp DNA PLN 10-FEB-1994 DEFINITION P.megasperma gene for 28S ribosomal RNA ACCESSION X75631 KEYWORDS 28S ribosomal RNA. SOURCE Phytophthora megasperma ORGANISM Phytophthora megasperma Eukaryota; Plantae; Thallobionta; Eumycota; Mastigomycotina; Oomycetes; Peronosporales; Pythiaceae. REFERENCE 1 (bases 1 to 3697) AUTHORS Van der Auwera,G., Chapelle,S. and De Wachter,R. TITLE Structure of the large ribosomal subunit RNA of Phytophtora megasperma and phylogeny of the oomycetes JOURNAL FEBS Lett. 338, 133-136 (1994) REFERENCE 2 (bases 1 to 3697) AUTHORS Van Der Auwera Jj,G. TITLE Direct Submission JOURNAL Submitted (13-OCT-1993) to the EMBL/GenBank/DDBJ databases. G. Van Der Auwera, Universitaire Instelling Antwerpen, Universiteitsplein 1, 2610 Wilrijk, Antwerpen, BELGIUM FEATURES Location/Qualifiers source 1..3697 /organism="Phytophthora megasperma" /strain="MUCL 11644" rRNA 1..3697 /product="28S ribosomal RNA" BASE COUNT 922 a 746 c 1068 g 961 t ORIGIN BASE COUNT 964 a 780 c 1111 g 1005 t 5402 others ORIGIN 1 |--------- ---------- ---------- auagCAACUU UCAGCAGUGG AUG|UCUAGG 61 |CUCGCAC|A U|-CGAUGAA GAA|CGCU(- -GCGA-AC)U |GC-GAUACG UA-augc|[- 121 gaauugcagg auucagugag u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---caucg|A AAUUUU-GAA Cgc-(auauu )-g-c|acuu 241 cc------gg g(-------- ---------- ---------- -----uuagu ---)ccu--- 301 ---g-ggagu ---augccug -u-au-cagu guc---(--- ---cgua--/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------uug )---gaccug auaucagg-c aAG----AUU 481 AC|CCGCUGA -A--CU|UA( AGCA)UA-UC AAUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-A)AG-G AU|UCCCCUA GU---AAC(G GCGA)GUG-A A-----GCGG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------agcu uaaaaucucc 781 gcgcaa(guu ---)-uugcg cg-gcgaauu guagucu-a- uagaggcg-u gguc------ 841 ---agcgu-- ---------- ---------- ---------- ---------- gg-gc-gcuu 901 gggg-caa-- --g-uuc-c( u-(uggaag- )a)gga-c-- ---------- --------AG 961 --|C(AUG)G |AGGG-(UGA UACU)-CCCG UU|--caucc cugagugg-c u-----cgcg 1021 cguac---ga cccguguu-- cuuu------ ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGCGUU GUU(----UG 1141 GGAA)UGCAG CGCAAA---- guAGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUC-- ---------- ---------- ---------- )CAU-CUAAA GCU----AAA 1381 UA-------- ---------- UUGGU-GCGA GACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G-GAAAGAUG -AAA-AGAAC UUU(ga-aa- )AGAG-AGUU A-AAGAGUAC C-UGAAAC-U 1501 GCUGA-AAG< gg---aaccg aaucguuucc agugucua-u aaucuguggc auauuucauu 1561 ggcgagugug ugcgcgcgug cgcug--ugg cagcggcuuu uuuggcugcg cucggugcgu 1621 guguugugug ugcuugcugg ugcccu-gug cugcgguggg acgucaaggu caguu-cgua 1681 ugcugcggga aauggcuacc gaggagguag ggcuuacgcu cugcguuugu cuauuauauc 1741 uugguggacg agucgucgcg guugggacug aggugccuac aacgugcuuu --ugaguggg 1801 ugugugucuc cgugugcgcc gugugcg--- gauagcuugc uaugcgugug ugguugugug 1861 uggauugaug cgugccuuaa cuugucgccg uuc------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- ---------- ---------- ---------- 2281 ---------- ---------- ---------- ---------- ---------- ---------- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ------ggga 2521 cguu-gac-- ---------- gaa-aug--- gagcgauccg >------ACC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUGUGU GCAAGUGU-u agggu----( ----g-ugga 2641 a-)------- ---------- ---a-cccc- ---------- --aGCGCGAA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ------aggg cagc(gcaa) guugucu--- -------gag guaggaa-au guugcgggc- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----uucg-- ----)----- ---------g ucugcggcgu -ggcacuauc 3061 g--------- ---------- ---------- ---------- -------acc ga-uc-auga 3121 acc(u-ucgu -)ggugaaa- -gau-uugag u]-------- ---------U UGAGCACAU- 3181 -AUG-UUGGU ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AG|U-AGGGU GAAGCCAGGG 3241 (GAAA----- -----)CUCU GGU-GGAAGC UCG-UA---G CG-AUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU CAAACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAAUUUCC --(CUCA)GG 3421 AUAGC-AGCA -ACUu--|-- -|-auuua-- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- -------cga 3661 u-aguUUUAU -G|AGG--UA AA-GCGAAUG AUUAGAGGA- -----UUCGG GGAA--(gaa 3721 a-c)--UUUC U-CGA-|CCU AUUC-UCAAA CUUUA-AAUC |UGUAAGacc -ugcagguu- 3781 -ucuuaauug aacuugug-g augug----- ---------- ---------- ---------- 3841 ---------- ---------- ----AAUauc a|AG-UUGCU -AGU-GGGCC -AUA-CGGG( 3901 G-UAAG)CUC GUC-UGGC-G AUGCGG(GA- UGAA)CCG-- AACGCAA--- AGUUAAA--G 3961 U|GCCA-AAA U-G--CC-CG CUCAC-cu-- --------ag auacca---- uAAAAGGUGU 4021 U--GGUUCAU UUAGACA-GC AGGACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- AAAGCGGGC| U|-------- --ACUUAU-- --ACUUUGC| (- -----)cgcg uuaau-gAGU AGGA------ 4441 --GGG|-CG- UG-AG-GG-- --------u- -c-g-uga-- a------GAA GCUC------ 4501 GuGGC(GUGA -)GCCUGAG- UGA|A-ACG| G--CCUUUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- U(gcgaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GACUGAAGU G-GAG|AAAG GUU|CCGUGU GA-UCA(-GU AAU)UG|GAC 4681 ACGGGUGAGU |-CGA-UCCU AAGA------ -------<-g auagga(-ua au)ucc--gu 4741 u---ugaaag cugggcuguu uggggcgug- -------ggg (uucgu---) ccuc-gcguu 4801 uuguaugcag ccucgugua- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA AGGGA-AU-C AGG(UUAAUA UU-)CCUGA| -AC----cga gacgugg-au 4981 aa[ugu---- ---------- ---------- ---------- -----gug(- -gcaa--)ca 5041 c--------- ---------- ---------- ---------- -----aa-c] cga-cccagg 5101 agac-----g cua--gcgug ug-c-ccag- -GG-AAGA(G UUCUCUUU-) UCUUUU-|UA 5161 A-caagca-- ---------- uau|ccuacc uugG--AAAC ----GG(AUU AU-)CCGGc- 5221 ga-ua-agg- aggaug---- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- -----ccu-u gGC-----AA 5341 AGCACUUUA( -cuuuu--)U GAAGUGUC-c ugcgcg---c -ccacg--ac agcC-CUUGA 5401 AAA-uccugg -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- cuagagau-- ---------- ------uuau -ucgcacc-- cu-cguUCGU 5581 A|CU--CAUA ACC(GCAUCA )GG|UCU-CC AAGGU(UAGC A)GCCUCU-| AGUUG-||A- 5641 UA-G--AAGA AU-GUAG-AU A-AGGGAAGU CGGCAA-AAU -AGAUCCGUA AC(UUCG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- ------------ -------CUC AGAACU|G(- --GAG)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGUG|A--UG G|CCG(---- 6661 gaga)CGG-- ---------- --U-GUUGAC ACAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(gaga) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAACU)AGUG AC|GCGCAUG AAUGGAUUAA UGAGAUUCCC ACUGU-CCCU AUCUACUGUC 6901 UA|GCGAACC C|aca-gCCA AG(GGAA-CG GG)CUUGGAA -U-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCU G---ACG-UU |GUGAAAUGA CUUGGGAGGU 7021 GUAGAAUAAG UGGGAGGC-- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- --UCU)---- 7141 --------GC c-GUCCGUGA AA-UACCACU |ACUCUCAA- -UGUUG-UUU UACUUAu--- 7201 ---------- ---------| --a GACAU-CGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAAUGAUA AC-)ACAG-G U|G|U|CCU- AAGGU-GAGC |UCAAU-GAG 7621 -A(ACA---- GAAA)UCUCA UGUAGA|AC( A|A--AAGG) GUAAAAG-CU C-ACUUGAUU 7681 -UUGAUUU(u c--aguau-- )GAAUACAAA CCGU(-GAAA )GCGUGG|CC --UAU|CGA- 7741 UCCUUUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- -uuC-UUU(- -AGAA-U--U U---)----- ---------- 7861 -----UAA|G CUAGAG-GUG UC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UCCAU)AG CGACGUUGCU UUUUGAUUCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-CGAAG(UA -GA-)ACUCG CCAA-UUGU| UGGAU(UGUU C)ACCCACUA 8041 AUAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-G<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->uuCGU UG-UC-UA-A ACAGUAAUCC AACC(CAGUA 8281 C(GAGA)GGA AC-)CGUUGG U|UCAGAUAA UUGGUAACUG CGG|-UUAGC U(GAAA)AGC 8341 UAGUGCCGCC A-AGCUACC- AU-CUGU--A GGAUUAUGGC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCA-U GCUG--g-aa -UAG--ACGA U<-aaucacc uuucccga-- ugugccgcga 8461 auagcg-aua --gguguccu cugggcaccc aaca-ucaua caauugcaac gca----cuc 8521 -cgcugccug ucaaaugcug gcgg-uggag -aguaggcug ac-uuguaau uucaaaua-- 8581 ---------- ---------- ---------- ---------- ---------- ---------- 8641 ---------- ---------- ---------u ugggaaaga> --|------( ---)------ 8701 ----uaaauc |cuuug(-ua gacga)cu-u aacua---ca g-a|acgggg uguuguaagc 8761 au-gagagua gu-------- ---------- --------(c uugu)----- ---------- 8821 ---------a cuacgauc-u gcu|gag-au u|uag--ccc u--ugu-u-c uau-uga-uu 8881 uguuc|---- ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS S.lomentar 9262 bp RNA RNA 11-JAN-191 DEFINITION Scytosiphon lomentaria. ACCESSION No information KEYWORDS No information. SOURCE Scytosiphon lomentaria. ORGANISM Scytosiphon lomentaria. REFERENCE 1 (bases 1 to 3398) AUTHORS Kawai,H., Muto,H., Fuji,T. and Kato,A. JOURNAL No information STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: D16558 LOCUS SCJRDNA 8345 bp rRNA RNA 30-JUN-1995 DEFINITION Scytosiphon lomentaria rDNA for 18S, 5.8S and 25S rRNA. ACCESSION D16558 KEYWORDS 18S ribosomal RNA; 25S ribosomal RNA; 5.8S ribosomal RNA. SOURCE Scytosiphon lomentaria gametophyte rRNA. ORGANISM Scytosiphon lomentaria Eukaryotae; mitochondrial eukaryotes; stramenopiles; Phaeophyceae/Xanthophyceae group; Phaeophyceae; Scytosiphonales; Scytosiphonaceae; Scytosiphon. REFERENCE 1 (bases 1 to 8345) AUTHORS Kawai,H., Muto,H., Fuji,T. and Kato,A. TITLE A 1995. A linked 5S rRNA gene in Scytosiphon lomentaria JOURNAL J. Phycol. 31, 306-311 (1995) COMMENT Submitted (28-JUN-1993) to DDBJ by: Hiroshi Kawai Department of Biology Faculty of Science Kobe University Rokkodai Nada-ku Kobe 657 Japan Phone: 078-881-4492 Email: Kawai@gradura.scitec.kobe.U.ac.jp Fax: 078-881-4492 Sequence updated (19-Jun-19959 by: Hieoahi Kawai. NCBI gi: 882099 FEATURES Location/Qualifiers source 1..8345 /organism="Scytosiphon lomentaria" /dev_stage="gametophyte" /sequenced_mol="rRNA" BASE COUNT 2017 a 2017 c 2241 g 2070 t ORIGIN BASE COUNT 849 a 778 c 1003 g 805 t 5827 others ORIGIN 1 |--------- ---------- ----uaacgu uGUAAAACUU UCAGCGACGG AUG|UCUUGG 61 |CUCCCAC|A A|-CGAUGAA GAA|CGCA(- -GCGA-AA)U |GC-GAUACG Uc-uug-c|[ 121 gacuugcaga auccagugaa u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---cauca|A AACUUU-GAA Cgc-(aucu- )-g-c|guuc 241 cgg------g a(-------- ---------- ---------- -----uaug- ---)cc---- 301 --ug-ggagc ---augcuug -u-cg-gagu gucuguugac acaucucgc/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ----caa--- 421 ---------- ---------- ---cuuucgu u-cggaccuc cgaucaag-c aAG-----ag 481 ga|CCGCUGA -A--UU|UA( AGCA)UA-U- ACUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-C)AG-G A-|UCCCCCA GU----AC(G GCGA)GUG-A AgcucggcGG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCUCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- --cguuguaa a--------- ---------- ---------- 781 ucugac(uuc g--)guccga au-uguaguc ---------- ---------- --uggagagg 841 cgugacca-- ---------- ---------- ---------- --------gc uggag-ucgg 901 gggc-gaa-- --g-ucu-c( u-(uggaaa- )a)gag-c-- ---------- --------au 961 --|C(AAG)G |Aggg-(uga c-au)--CCG UU|-cuugcc uccgc--gcu c-----ca-- 1021 cgcguacggu c-cguuuu-c uac------- ---------- ---------- ---------- 1081 ---------- ---------- ---------- --------|G AGU-CGAGUU GCU(----UG 1141 GGAU)UGCAG CUCAAA---- GCGGGU-G(- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 GUAAAUUC-- ---------- ---------- ---------- )CAU-CUAAA GCU----AAA 1381 cA-------- ---------- CGGGU-GGGA GACCGAUAGC GAAC-AAGUA CC(GUGA)G- 1441 G--AAAGAUG -CAA-AGAAC UUU(ga-aa- )AGAG-AGUU a-AAGAGUGC C-UGAAAU-U 1501 GCUGA-AAG< gg---aagcg aaggaaac-c a--------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- ---------- ---------- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- -----guguc uggcggucuc gcuucuccuu ggccccucgg 2221 ggccuugguu ugcguuuccg ccguggccag ggccggguag cguugcggga ggcugcgc-u 2281 ucg-gaaggu agcgucucga cucgucgagc gugaagaccg uggcgu-uuc g-uccggaug 2341 cuggccgguu cu-------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 -----gac-- ---------- gaa-aug--- guuuucuuua >------CCC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUGC-C GCGAguac-- -aggu----( ----g-uuca 2641 a-)------- ---------- ---a-ccc-- ---------- ---gugcGCA GU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ----augcag guggaa--gc g--------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ---------( ----ucu--- ----)----- ---------- -------cgu -ggcaccauc 3061 g--------- ---------- ---------- ---------- -------a-c ga-cc--aug 3121 ucu(c-uucg -)ggggcga- -ggu-uugag u]-------- ---------g uGAGCGUGC- 3181 -AUG-UUGG- ACCCGAAAGA U-GGUG-AAC UAUG-CCUG- AA|U-A-GGC GAAGCCAGGG 3241 (GAAA----- -----)CUCU GGU--GAGGC UCG-U----a CG-AUUCUGA (CGUGCAAA) 3301 UCG-a-UCGU gaGAUUU-GG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)----CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAAUUUCC --(CUCA)GG 3421 AUAGC-UGCA -ACCu--|-- -|-gcguu-- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 -caguUUUAU -C|AGG--UA AA-GCGAAUG AUUAGAGGC- ------ugcu ggaa--(gca 3721 a-c)--uucc uagc--|CCU AUUC-UCAAA CUUUA-AA-- |GGUAAGaga -cc-ggggu- 3781 c-gcuuaauu g--gacccug cguug----- ---------- ---------- ---------- 3841 ---------- ---------- ----gaauga a|GG-UUGCU -AGU-GGGCC -AGU-CCGG( 3901 G-UAAG)CUG GAC-UGGC-G AUGCGG(GA- UGAA)CCG-- AACGACU--- AGUUAAa--g 3961 c|GCCA-AAC U-G--CC-CG CUCAC-cu-- -------aga ucccac---- -AAAAGGUGU 4021 U--GGUUCAU -uAGACA-GC AG-ACGGUGG CC(AUGG-AA GUC)GGAAUC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAACU AGC|CC-UGA AAA--UGGAU 4141 G--G-G-CU- GAAGCGAGC| G|-------- --GCU-AU-- --ACUAGUC| (- -----)-uuc ccaau-g-GU AGGA------ 4441 --GGG|-CG- CG-GG-GC-- --------u- -c-g-uag-- c------gca ucuu------ 4501 cgGCC(GUGA -)GGCggag- UGA|A-ACG| U--GCCCCG- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGC-AA -UAUUCAAA- U(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GACUGAAGU G-GAG|AAAG GUU|CCAUGU GA-ACA(-GC AAU)UG|-AC 4681 AUGG-UUAGU |-cga-UCCU AAGA------ -------<-g auagga(-ga ag)ucc--gu 4741 ----ucgaa- --gcgac--- ---------- ---------- (uucgg---) ---------- 4801 --------gu cgccacua-- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------- ------>--- 4921 ----UC-GAA AGG-A-AG-C GGG(UUAAGA UU-)CCCGC| -AC----cgg gacguga-ua 4981 c-[uga---- ---------- ---------- ---------- -----gug(- -gcga--)ca 5041 c--------- ---------- ---------- ---------- -----aa-g] cgc-aaucgg 5101 agac-----g ucg--gcuag ag-u-cccg- -GC-GAGA(G UUGUCUUU-) UCUCGU-|UA 5161 A-cgccuu-- ---------- ugg|ucg-ac cugg--aauc ----gg(cuu g--)ucggc- 5221 ga-uagg-gu ggac------ ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ----uggg-c gGG-----AA 5341 AGCGG-CA-( --cuuu--)- UGCCCGUc-g gugcg----c -ucuag--ac ggcC-CUUGA 5401 AA--uccgau g<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ---------- --------ac guguuuauuc --uc-acc-- cc-cg--gug 5581 A|CU--CAUA ACC(GCAUCA )GG|UCU-CC AAGGU(GAGC A)GCCUCU-| GGUCG-||A- 5641 UA-G--AgCA A--GUAG-AU A-AGGGAAGU CGGCAA-gc- -AGAUCCGUA AC(CUCG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- -(-----)---- -------CUC AGA-CU|G(- --GAG)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--gG G|CCG(---- 6661 gaga)CGG-- ---------- --U-GUU-AC GCAAUGUGgc AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(ggaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAACU)AGU- a-|GCGCAUG AAUG-AUUAA UGAG-UUCCC ACUGU-CCCU AUCUACUGUC 6901 UA|GCGA--C C|aca-gCCA A-(GG-A-CG GG)CUUGGau --a-AU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCC G---AUG-UU |GUGAAAUGA CUUAUGAGGU 7021 GUAG-AUAGG CGGagcuu-- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -----)---- 7141 --------gc c-GACGAUGA AA-UACCGCC |ACUCGUAA- -UGUUG-UUU UACUUAu--- 7201 ---------- ---------| --a GACAA-CAUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAACGAUA AC-)ACAG-G U|G|U|CCU- AAGGU-UAGC |UCAAU-GAG 7621 -A(ACA---- GAAA)UCUCA UGUAGA|AC( A|A--AAG-) GUAAAAG-CU A-ACUUGAUU 7681 -UUGAUUU(u c--aguac-- )GAAUACA-A CUGU(-GAAA )GCAUGG|CC --UAU|CGA- 7741 UCC-UUAG-- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- --uC-UU-(- -CGGA-U--U U---)----- ---------- 7861 ------AA|G CUAGAG-GUG UC|AGA--AA AGUUACCA|C A-G|GAUAAC U-|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU -UUUGAUUCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UG --uguCG(CA -GA-)AGuca cCAA-GUGU| aGGAU(UGUU C)ACCCaCUA 8041 ACAGGGAACG UGAGCUGG-- UUAGACC--- ---------G UC(GUGA)GA CA-GUUAGU- 8101 UUACCCUACU GAUGA-g<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->--uUG UU-GC-CA-c gacGUAAUCU AACU(UAGUA 8281 C(GAGA)GGA AC-)CGUUAG U|UC-GAUAA UUGGUuuaUG GGG|-UUGUC U(GAAC)AGA 8341 CAGUGCCCCG A-AGCUACC- AU-CCGU--c -GAU-AUGAC U(GA-CGCCU C-U-A)AGUC 8401 AGA-UCca-u gcug-aaaag -UGG--CGAU G --|------( ---)------ 8701 ------aaau |ccuug(-ua gacga)cu-u gauaa----g g-a|acggg- uau-guaagc 8761 au-gagagua gg-------- ---------- -------c(- uuu-)gu--- ---------- 8821 ---------c cuacgauc-u gcu|gag-au u|aag-ccuc u--ugu-u-c cgaagau-uu 8881 gugc-|---- ------|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| || // LOCUS Tri.aequal 9262 bp RNA RNA 29-JUL-1997 DEFINITION Tribonema aequale.; 28S ribosomal RNA; 28S rRNA; internal transcribed spacer 2; ITS2. ACCESSION Y07979 KEYWORDS 28S ribosomal RNA; 28S rRNA; internal transcribed spacer 2; ITS2. SOURCE Tribonema aequale. ORGANISM Tribonema aequale. REFERENCE 1 (bases 1 to 3452) AUTHORS Van der Auwera,G. and De Wachter,R. TITLE heterokont algae ochromonas danica, nannochloropsis salina, and tribonema aequale, and phylogenetic analysis Complete large subunit ribosomal RNA sequences from the JOURNAL J. Mol. Evol. 45 (1), 84-90 (1997) STANDARD No information REFERENCE 2 (bases 1 to 3452) AUTHORS Van Der Auwera,G.J.J. TITLE Direct Submission JOURNAL Submitted (12-SEP-1996) G.J.J. Van Der Auwera, University of Antwerp, Dept. Biochemistry, Universiteitsplein 1, B-2610 Wilrijk, Antwerpen, BELGIUM STANDARD No information COMMENTS Sequence information (bases 1 to 9262) Corresponding GenBank entry: Y07979 + Y07978 BASE COUNT 840 a 858 c 1097 g 764 t 5703 others ORIGIN 1 |--------- ---------- ---------- aauauaacuu ucagcgacgg aua|ucuagg 61 |cucccac|a a|-CGAUGAA GAA|CGCA(- -GCGA-AA)U |GC-GAUacg uc-uugc|[- 121 gacuugcaga acccagugaa u--------- ---------- ---------- -------]-- 181 ---------- ---------- ---cauca|a accuuc-gaa cgc-(accuu )-g-c|gcuc 241 u------cgg g(-------- ---------- ---------- -----cauu- ---)cccggg 301 -------agc ---augcuug -u-cg-gagu guc---(cgc g--------/ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- -------ucg )---gaccuc cgaucaag-c aag----agG 481 AC|CCGCUGA -A--UU|UA( AGCA)UA-UA ACUAAG-C-G G-AGGAAA-- --AGAAACU( 541 AAC-C)AG-G AU|UCCCCUA GU---AAC(G GCGA)GUG-A A-----GCGG GAAG------ 601 ---------- ---------- ---------- ---------- -AGCCCA|-- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---cgau-gg 781 uaaucg-aug cg-ccccugc g-gcca-ccg aauuguaguc uguagagggu cguccacugc 841 ---------- ---------- ---------- ---------- ---------- --gca-ccgc 901 cgacucaa-- -------CCC CGU(CUUGAA 2581 AC)ACGG|AC CAAGG-AGUC UAACAUGUGC GCGAGUGC-A GGGGU----( ----gauuga 2641 a-)------- ---------- ---a-cccg- ---------- --ugcgcGCA AU(GAAA)GU 2701 GA[------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- -----gagug gugggagggc ugucacaggc 2941 c--------- ---------- ---------- ---------- ---------- ---------c 3001 gcaccauccg ccgaccagca u--------- ---------- ---------- ---------- 3061 ---------- ---------- ---------- ---------- ---------- ---------- 3121 -------ccu ccgggagacc gcgguuugag u]-------- ---------G GGAGCGUAC- 3181 -AUG-UUGGG ACCCGAAAGA U-GGUG-AAC UAUG-CUUG- AG|U-AGGGC GAAGCCAGGG 3241 (GAAA----- -----)CUCU GGU-GGAGGC UCG-ua---G CG-AUUCUGA (CGUGCAAA) 3301 UCG-A-UCGU CGAACUUGGG UAUAGGG--G C--------- ---------- ---(GAAA-- 3361 --G)A---CU AAU-CGAACC AUCUAGUAGC UGGUUCCCUC CGAAAUUUCC --(CUCA)GG 3421 AUAGC-UGCA -ACC--U|-- ----gucucc gucca----- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---guUUUAU -C|AGG--UA AA-GCGAAUG AUUAGAGgc- -----cucgg gggc--(gca 3721 a-u)--gccc u-cga-|ccu auuc-ucaaa cuuua-aaug |gguaagaga -c-cgggg-- 3781 ucgcuugauu g-gacccugg cuuucga--- ---------- ---------- ---------- 3841 ---------- ---------- -----aug-A A|GG-UUGCU -AGU-GGGCC -AGC-UGGG( 3901 G-UAAG)CUC GGC-UGGC-G AUGCGG(GA- UGAA)CCG-- AACGUCG--- AGUUAAA--G 3961 U|GCCC-AAC U-G--CU-CG CUCAC-cua- --------ga ucccac---- -AAAAGGUGU 4021 U--GGUUCAU UUAGACA-GC AGGACGGUGG CC(ACGG-AA GUC)GGAACC CG|C(UAA)G 4081 |GAGUGU(GU AACA)AC|-- -UCACCUGCC -GAAUGAACU AGC|CC-UGA AAA--UGGAU 4141 G--GCG-CU- GAAGCGGGC| G|-------- --ACUUAU-- --ACUCGGC| (- -----)-ccc gcgau-gagu agga------ 4441 --GGG|-CG- UG-GG-GC-- -------uc- -c-g-uag-- c------gca gcuc-----g 4501 c-GGC(GUGA -)GCCGGAG- UGA|A-ACG| G--GCCCUA- GUGC-AGA-U CUUGGU|GG- 4561 UAGUAGCAAA -UAUUCAAA- A(gagaa--- ---------- ---------- ---------- 4621 --)CUUUGAA |GGCUGAAGU G-GAG|AAAG GUU|CCAUGU GA-ACA(-GC AAU)UG|GAC 4681 AUGGGUAAGU |-CGA-UCCU AAGA------ ---------- 4921 ----UC-GAA AGGGA-AU-G GGG(UUAAGA UU-)CCCCA| -ac----cgg gacgugg-au 4981 au[-ugg--- ---------- ---------- ---------- -----gcg(- -gcaa--)cg 5041 c--------- ---------- ---------- ---------- -----aa-g] caa-gaucgg 5101 guac-----g uca--gcgag ag-c-cccg- -gc-gaga(g uucucuuu-) ucucgu-|ua 5161 a-cagagcg- ---------- ggcucgcacc cugg--aauc ----gc(guu ag-)gcggc- 5221 ga-ga-ggg- ugcgggc--- ---------- ---------- ---------- ---------- 5281 ---------- ---------- ---------- ---------- ------gc-u ggg-----ac 5341 agcggugcu( -ucauu--)g gcgccguc-c ggugcg---c -ucucg--au ggcC-CUUGA 5401 AAC-cccgau -<-------- ---------- ---------- ---------- ---------- 5461 ---------- ---------- ---------- ---------- ---------- ---------- 5521 ->-------- ---------- --------gg cgcgacuuau ucuc-acc-- cc-cggUCGU 5581 A|CU--CACA ACC(GCAUCA )GG|UCU-CC AAGGU(GUGC A)GCCUCU-| AGUCG-||A- 5641 UA-G--AACA AU-GUAG-AU A-AGGGAAGU CGGCAA-GAC -AGAUCCGUA AC(CUCG)GG 5701 AAAAGGAUU| GGCUCUGAG- ---------- ------------ -------CUC AGAACU|G(- --GAG)CGGA 6601 CAAGGGGAAU C|-CGACUGU UU(AAUUA)A AACAAAGCAU UGCG|A--GG G|UCG(---- 6661 gaga)CGA-- ---------- --U-GUUGAC GCAAUGUG-- AUUUCUGCCC AGU|GCUCUG 6721 AA-UGUCAA- ---agugaa- ----(ggaa) -----uucaa ----CCAAGC G|CGGGUAAA 6781 C|GGC|GGGA GU(AAC-UAU G)ACUCUC|U (UAA)GGUAG CCAAAUGCCU C|GUCAU-C( 6841 UAACU)AGUG AC|GCGCAUG AAUGGAUUAA UGAGAUUCCC ACUGU-CCCU AUCUACUAUC 6901 UA|GCGAACC C|ACA-GCCA AG(GGAA-CG GG)CUUGGAA -C-AAU-CAG CGGGGAAAGA 6961 AGACCCUGUU G|AGCUUGAC UCU-|AGUCC G---ACG-UU |GUGAAAUGA CUUGUGAGGU 7021 GUAGAAUAGG CGGGAGGC-- ---------- --<------- ---------- ---------- 7081 ---------- ---------- ---------- ---------- ------->(- -cucg)---- 7141 --------GC C-GCCGGUGA AA-UACCGCC |ACUCGCAA- -UGUUG-UUU UACUUAU--- 7201 ---------- ---------| --A GACAA-CGUC A-GGUG-GGG AG-UUUGGCU G(GGG)CGGC 7561 A-C|AUCUGU (UAAACGAUA AC-)ACAG-G U|G|U|CCU- AAGGU-UAGC |UCAAU-GAG 7621 -A(ACA---- GAAA)UCUCA UGUAGA|AC( A|A--AAGG) GUACAAG-CU A-ACUUGAUU 7681 -UUGAUUU(u c--aguac-- )GAAUACAAA CUGC(-GAAA )GCAUGG|CC --UAU|CGA- 7741 UCCUUUA--- ---------- ---------- ---------- ---------- ---------- 7801 ---------- ---------- gauc-uuu(- -ugaa-u--u u---)----- ---------- 7861 -----UAA|G CUAGAG-GUG UC|AGA--AA AGUUACCA|C AGG|GAUAAC UG|GCUUGUG 7921 GCAGCCAAGC G(UUCAU)AG CGACGUUGCU UUUUGAUUCU UCGAUGUC|G GC-U|C|UUC 7981 CU|AUCA|UU G-UGUCG(CA -GA-)AGUCA CCAA-GUGU| AGGAU(UGUU C)ACCCACUA 8041 ACAGGGAACG UGAGCUGGGU UUAGACC--- ---------G UC(GUGA)GA CAGGUUAGUU 8101 UUACCCUACU GAUGA-u<-- ---------- ---------- ---------- ---------- 8161 ---------- ---------- ---------- ---------- ---------- ---------- 8221 ---------- ---------- ---->--ugg uc-gccgc-G ACAGUAAUCC AACU(UAGUA 8281 C(GAGA)GGA AC-)CGUUGG U|UCAGGCAA UUGGUUUAUG GGG|-UUGGC U(GAAC)AGC 8341 CAGUGCCCCG A-AGCUACC- GU-CUGC--A GGAUUAUGAC U(GAACGCCU C-U-A)AGUC 8401 AGAAUCCA-U GCUG-----g aaag--cggc g --|------- ---------- 8701 ----uaaauc |cuuug(-ua gacga)cu-c ugaa-----a gga|acgggg uauuguaagc 8761 au-gagagug gg----(cuu ug-------- ---------- ---------- ---------- 8821 ----)----c cca~~~~~~~ ~~~|~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8881 ~~~~~|~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 8941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 9241 ~~~~~~~~~~ ~~~~~~~||| |~ //